AlfalfaGEDB | MS.gene75444

M. sativa cultivar XinJiangDaYe / MS.gene75444

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75444.t1	XP_003602014.1	87.3	284	36	0	1	284	1	284	1.50E-135	492.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75444.t1	G4N286	31.5	270	178	5	17	283	10	275	2.2e-29	131.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75444.t1	G7J4E2	87.3	284	36	0	1	284	1	284	1.1e-135	492.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene75444	0.817867	2.64E-52	-1.69E-46
MS.gene049232	MS.gene75444	0.827315	1.67E-54	-1.69E-46
MS.gene050518	MS.gene75444	0.802409	5.69E-49	-1.69E-46
MS.gene050772	MS.gene75444	0.806438	8.23E-50	-1.69E-46
MS.gene052966	MS.gene75444	0.812599	3.91E-51	-1.69E-46
MS.gene053574	MS.gene75444	0.819419	1.17E-52	-1.69E-46
MS.gene058719	MS.gene75444	0.80652	7.91E-50	-1.69E-46
MS.gene059865	MS.gene75444	0.802062	6.70E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013841	MS.gene75444	PPI
MS.gene045080	MS.gene75444	PPI
MS.gene75444	MS.gene75445	PPI
MS.gene75444	MS.gene013841	PPI
MS.gene75444	MS.gene013839	PPI
MS.gene75444	MS.gene045080	PPI
MS.gene75444	MS.gene015282	PPI
MS.gene75444	MS.gene09624	PPI
MS.gene75444	MS.gene43514	PPI
MS.gene75444	MS.gene013840	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75444.t1	MTR_3g087850	89.399	283	30	0	1	283	16	298	0.0	530
MS.gene75444.t1	MTR_3g087860	91.901	284	23	0	1	284	1	284	0.0	522
MS.gene75444.t1	MTR_4g097510	47.015	268	139	2	13	278	4	270	1.48e-85	257
MS.gene75444.t1	MTR_3g085740	33.505	194	122	3	8	195	72	264	2.26e-23	97.8
MS.gene75444.t1	MTR_4g058840	36.041	197	111	7	15	198	15	209	7.88e-23	95.1
MS.gene75444.t1	MTR_4g058820	36.041	197	111	7	15	198	15	209	7.88e-23	95.1
MS.gene75444.t1	MTR_4g058810	35.025	197	113	7	15	198	15	209	1.90e-21	91.7
MS.gene75444.t1	MTR_8g096580	33.679	193	117	6	12	196	46	235	2.47e-19	86.7
MS.gene75444.t1	MTR_1g051165	31.863	204	121	6	9	195	12	214	8.66e-19	84.3
MS.gene75444.t1	MTR_8g096620	29.502	261	161	10	15	263	49	298	3.27e-18	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75444.t1	AT5G10050	66.912	272	90	0	11	282	5	276	1.19e-142	402
MS.gene75444.t1	AT5G65205	65.683	271	93	0	11	281	6	276	4.89e-141	399
MS.gene75444.t1	AT3G03330	27.985	268	159	6	15	270	45	290	3.91e-22	94.4
MS.gene75444.t1	AT5G50600	30.851	188	120	5	15	195	49	233	2.03e-21	92.8
MS.gene75444.t1	AT5G50700	30.851	188	120	5	15	195	49	233	2.03e-21	92.8
MS.gene75444.t1	AT2G17845	33.831	201	117	7	10	195	46	245	6.77e-19	85.1
MS.gene75444.t1	AT1G10310	32.843	204	124	6	16	209	20	220	7.88e-19	84.0
MS.gene75444.t1	AT3G55310	33.333	198	119	6	10	195	16	212	2.60e-18	83.2
MS.gene75444.t1	AT1G24360	32.990	194	123	4	8	195	71	263	6.39e-18	82.4
MS.gene75444.t1	AT1G62610	31.658	199	122	6	10	195	12	209	8.02e-18	81.6

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Find 73 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTGGTTCTCATCAC+AGG	0.491991	3.3:-73149991	MS.gene75444:CDS
AACGCTGGTGTTCTTTGTGT+GGG	0.556188	3.3:-73149751	MS.gene75444:CDS
AACTCTGTTCACGCTTTCAT+CGG	0.468082	3.3:+73149822	None:intergenic
AAGTCAAATATTGGAAATTC+CGG	0.338697	3.3:-73147123	MS.gene75444:CDS
AATAATGTTCTAGATAAATT+TGG	0.248184	3.3:-73149796	MS.gene75444:CDS
ACGTTCAACCATGGCGGATT+TGG	0.307727	3.3:-73149887	MS.gene75444:CDS
ACGTTTGATACTAACGTATT+TGG	0.203077	3.3:-73149691	MS.gene75444:intron
AGAAAGTCTCTAACACAGAG+AGG	0.683130	3.3:+73146889	None:intergenic
AGAGAGGAACTTCAGCAAGT+GGG	0.639603	3.3:+73149728	None:intergenic
AGATTGGAACTTGGAAATTT+TGG	0.076726	3.3:-73147180	MS.gene75444:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTAAACCAGTGATTTCT+AGG	+	chr3.3:73149173-73149192	None:intergenic	30.0%
ACCGAATTGTTGAAATAGTT+TGG	-	chr3.3:73148203-73148222	MS.gene75444:intron	30.0%
ACGTTTGATACTAACGTATT+TGG	-	chr3.3:73147200-73147219	MS.gene75444:intron	30.0%
ACTATTTCAACAATTCGGTT+CGG	+	chr3.3:73148202-73148221	None:intergenic	30.0%
ACTTAAACCAGTGATTTCTA+GGG	+	chr3.3:73149172-73149191	None:intergenic	30.0%
ATCTATATTGGGCACAATAT+AGG	-	chr3.3:73148479-73148498	MS.gene75444:intron	30.0%
ATGCTTTGACAGATACATTA+AGG	-	chr3.3:73147958-73147977	MS.gene75444:intron	30.0%
CAACAACATGTAAGACATAA+AGG	+	chr3.3:73149676-73149695	None:intergenic	30.0%
CCCAAACTATTTCAACAATT+CGG	+	chr3.3:73148207-73148226	None:intergenic	30.0%
CCGAATTGTTGAAATAGTTT+GGG	-	chr3.3:73148204-73148223	MS.gene75444:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	73146864	73150049	73146864	ID=MS.gene75444
chr3.3	mRNA	73146864	73150049	73146864	ID=MS.gene75444.t1;Parent=MS.gene75444
chr3.3	exon	73149692	73150049	73149692	ID=MS.gene75444.t1.exon1;Parent=MS.gene75444.t1
chr3.3	CDS	73149692	73150049	73149692	ID=cds.MS.gene75444.t1;Parent=MS.gene75444.t1
chr3.3	exon	73148934	73149093	73148934	ID=MS.gene75444.t1.exon2;Parent=MS.gene75444.t1
chr3.3	CDS	73148934	73149093	73148934	ID=cds.MS.gene75444.t1;Parent=MS.gene75444.t1
chr3.3	exon	73146864	73147200	73146864	ID=MS.gene75444.t1.exon3;Parent=MS.gene75444.t1
chr3.3	CDS	73146864	73147200	73146864	ID=cds.MS.gene75444.t1;Parent=MS.gene75444.t1

Gene Sequence

>MS.gene75444

ATGGAGAAGATCAACAGCGATGTTCAAGAAGATTCAAAACCAGTGGTTCTCATCACAGGTTGCAGCGGAGGAGGTATAGGTAACGCGCTTGCACGCTCCTTCGCAGCTAACAGCTGCAAAGTGGTTGCAACCAGCAGGTCACGTTCAACCATGGCGGATTTGGATCAAGACCCTAAATTCTTTCTTCAAGAACTCGATGTGCAGTCCGATGAAAGCGTGAACAGAGTTGTGAATAATGTTCTAGATAAATTTGGTCGCATCGATGTTCTTGTAAATAACGCTGGTGTTCTTTGTGTGGGCCCACTTGCTGAAGTTCCTCTCTCTGCAATCCAAAACACGTTTGATACTAACGTATTTGGTTGGTAATTCTTTTTATAAACACAAAAAAAAAAAAATAGAATTTAGAAGGAAAAAAAATTAATATTATTGATTTATTGCTTAACTTGATTCTTAATTCTAGTTTTGTTTGTTGGATTGAAGTTGAAAAGTAGTTGTCTGGCTTTTTGGAGAGATTTTTGTGTTCTTTTGAAGAATGAGAATGGGTTTGATGCTCAAAAAGGGAATGATCTCTGTAGCAGCGCAGACAATTCTGTTTGAAGGCGTGTCCCGGTGCCCAACATGTGTCAGTGTTCGACACTGACATTACATTGAATTATGTTATTTTCTCAAAATTTAATCGGTAGTGCCAGTATCCGAGTGTTTGTGCTTCATAGGGAATGATACAATTTTTATATTAAACTTTGAGTTTTGTGTATTCAGTTCATTTATGTTGGTATGGCCCAAAACAAAAGAAACTTCAATGTCATTTTGTACTGCAAAACATGAATTTGTCGTTGTCTAGTATTACTAGTACCAAGTACAATTGGGTGTAAACAAAGGTTTTTGTATTTATCAATGTTGTTAATAGGTTTTAGTTTTTGAGTATTGCTTCTAAATATCACTCCATACATGTGCAGGAACCATGAGAATGGTCCAGGCTGTAGTTCCTCACATGGCAACTAGGAAACAGGGAAAGATTGTTAACGTTGGAAGTGTTGCTGGGTTGGCATCTGGACCTTGGAATGGTGCTTACAGTGCTTCTAAAGCTGCTATTCATGCTTTGACAGATACATTAAGGTTTTTTTTTTTCAAACTTGTTTTAATTTTGGATAAGTTGTTCATGTTTGAATCAAATGAACCATATGGAAGTTATAGAAATCTGCTTGTTTTGATAGAGATTTTTGCTTTGTTGTGGTGTACGTGAAGGAAACCTTGGTTTAACGGTGTTACAGTTACTATACCATGTCAACAGAAATCACTAGGGGTGGGCATGTTTGGTTTATGAAGAAAACTGAACCGAACCGAATTGTTGAAATAGTTTGGGAAAACCGAACCGTTTAAGGTTTGGAACGAACCGAACCAAACTGAACCAAACTTATGGTTCGGTTAACCATTTTATTACCTACGAACTGAACCAAAAACAATATTTTGAACCGAAATGTATTTTTTGGTTCTTTGTGAATTTAATTGTGTTTTTTTGTCCTTTTTTAATGTAATTGCATGATATTCGAAGATTTTTGCAACACTTGGTTGTTTACAAATGTTGTGATGGAATTTGAGGCACTTGGAGTTCTTAATCTATATTGGGCACAATATAGGAAGCTGACTACAGAAGTTTGATGTACCTGTTTTCATGTTTAATTGGACTGTGCTTAGTCGGTAGTATAATAGATTTCTACCTATTGATTGGCTAAAAAAGAAGTATATGGTGAAAACGTTTTTCTTTTATGTGATTATCAACAAAGCCTATGAAGAAGATAAAAGAAAAGGGAAGTATAATGTTTTAATGAGTTTTAATGTTATTTTGTAGCTAAGCTGTTTTAGTTTGTTCATACTTTTTCTCTTTCAGACTTGGGAGTAAATCAAAACATTTCAGTTCATATGCACTGATTTTCAACTGCATTGAGCCAAAGTATACTGCATAAAAAAAAACTCTATAGAAATGTATAAATAATATTATTGTTATGCTTACACCGAACTGGACTAAACATGTACTTAATAATTGAAAATGTATAAATAATATTATTGCTATGCAGACAGCTCTAAGTAGTAATCTCAGTATCAGTCCTAAAATGAACAGAACGCGTGTTATCAAACTGCCTAGAAACATGGTTAATGGTTCAGTTCTGAAAAGTTAATTGAGTTTATTAACGGTTCGGTTCGGTTAGTTAACCGTTATCAAAATAATGGATCGGTTCAAGAATTGGTGAAATGGTTCGGTTAATTTTGGTCCAATTCGGTTTGGTTCTTGGTTAATTTTGCCCACCCCTAGAAATCACTGGTTTAAGTTGTAGAATCAGTCTCTTAGTGTCAGATTTCACTTTTGCTATGTATATGCATGCTTTTAGAGATAGTCTGATCCGGATCAATGTGTTAATTTGATGAAAGTGTAATCTAGCGGAGTTTGGTAAGCCCTACACAGTACTTTATGACTAAAGTCCAAGTGAACATTGCAAAAAACAAATACTGAAATGAAATAGTTCATGATGGAGACTAAAATGTCTCTAAAAATTATCTTAAGAAAGACTAATTTGACATATATTTAACATTTTTCAAAAAAGTTAGATGCCTTTCACTTTCAAGGACTAAACTAGTATGCGTTGTTTAGAAGTATCAGATTGAGGCTCTACTGGTACTATATTCATATTCATATTAGGTATTACAGTACTAAGGCCAAGTTTTGGTGGATGCAACAATACACCATTTGGGATTTGGTGGCTGGACTCTGCCATTATTTAATTTTGTAGTTGCTTGCCAAATTGACTTTTTTCCTTTATGTCTTACATGTTGTTGTTATTTTCAACAAACAGATTGGAACTTGGAAATTTTGGAATTGATGTTGTGAATGTTCTCCCTGGAGCTGTGAAGTCAAATATTGGAAATTCCGGCATAGCCATCTACAACCGCATGCCGGAGTGGAAACTATTCAAACCATTTGAAGCAGCAATCCGAGAGAGAGCTCTATTTTCTCAGGGGTCAAGATCAACCCCTACAGACGAGTTTGCTAAACGCACCGTAGCTGCTGTCCTTAGGAAGAAACCACCTGCATGGTTCTCGTATGGCCATTATTCTACTGTCATGGCTGTTATGTACCATTTACCTCTCTGTGTTAGAGACTTTCTTTTTAAGAAAGCAATGAAATGTTGA

Protein sequence

>MS.gene75444.t1

MEKINSDVQEDSKPVVLITGCSGGGIGNALARSFAANSCKVVATSRSRSTMADLDQDPKFFLQELDVQSDESVNRVVNNVLDKFGRIDVLVNNAGVLCVGPLAEVPLSAIQNTFDTNVFGTMRMVQAVVPHMATRKQGKIVNVGSVAGLASGPWNGAYSASKAAIHALTDTLRLELGNFGIDVVNVLPGAVKSNIGNSGIAIYNRMPEWKLFKPFEAAIRERALFSQGSRSTPTDEFAKRTVAAVLRKKPPAWFSYGHYSTVMAVMYHLPLCVRDFLFKKAMKC