Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013848.t1 | XP_024625179.1 | 96.2 | 554 | 10 | 1 | 363 | 905 | 22 | 575 | 2.70E-298 | 1034.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013848.t1 | Q9FLD7 | 54.6 | 355 | 160 | 1 | 9 | 362 | 93 | 447 | 4.0e-117 | 424.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013848.t1 | G7L1K5 | 96.2 | 554 | 10 | 1 | 363 | 905 | 22 | 575 | 1.9e-298 | 1034.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene013848 | MS.gene055922 | PPI |
MS.gene013848 | MS.gene47278 | PPI |
MS.gene87743 | MS.gene013848 | PPI |
MS.gene013848 | MS.gene55621 | PPI |
MS.gene87893 | MS.gene013848 | PPI |
MS.gene87064 | MS.gene013848 | PPI |
MS.gene055922 | MS.gene013848 | PPI |
MS.gene013848 | MS.gene042497 | PPI |
MS.gene013848 | MS.gene42075 | PPI |
MS.gene013848 | MS.gene82237 | PPI |
MS.gene013848 | MS.gene77045 | PPI |
MS.gene013848 | MS.gene48819 | PPI |
MS.gene76728 | MS.gene013848 | PPI |
MS.gene47278 | MS.gene013848 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013848.t1 | MTR_7g086730 | 96.209 | 554 | 10 | 1 | 363 | 905 | 22 | 575 | 0.0 | 1100 |
MS.gene013848.t1 | MTR_7g086720 | 97.514 | 362 | 9 | 0 | 1 | 362 | 38 | 399 | 0.0 | 763 |
MS.gene013848.t1 | MTR_6g027550 | 74.763 | 317 | 77 | 1 | 49 | 362 | 1 | 317 | 0.0 | 526 |
MS.gene013848.t1 | MTR_6g027510 | 50.082 | 609 | 230 | 13 | 363 | 905 | 22 | 622 | 1.20e-169 | 507 |
MS.gene013848.t1 | MTR_6g027510 | 49.546 | 551 | 204 | 13 | 421 | 905 | 23 | 565 | 4.47e-147 | 447 |
MS.gene013848.t1 | MTR_0072s0020 | 56.322 | 348 | 145 | 6 | 17 | 361 | 89 | 432 | 1.78e-135 | 412 |
MS.gene013848.t1 | MTR_6g011080 | 53.868 | 349 | 160 | 1 | 14 | 361 | 84 | 432 | 6.80e-134 | 408 |
MS.gene013848.t1 | MTR_2g085300 | 55.331 | 347 | 149 | 4 | 17 | 362 | 83 | 424 | 3.13e-133 | 405 |
MS.gene013848.t1 | MTR_4g114140 | 57.895 | 304 | 127 | 1 | 18 | 320 | 76 | 379 | 1.08e-128 | 393 |
MS.gene013848.t1 | MTR_4g022240 | 51.873 | 347 | 166 | 1 | 17 | 362 | 73 | 419 | 3.37e-127 | 390 |
MS.gene013848.t1 | MTR_0662s0030 | 58.113 | 265 | 110 | 1 | 57 | 320 | 16 | 280 | 1.37e-113 | 350 |
MS.gene013848.t1 | MTR_1g108280 | 45.479 | 365 | 171 | 5 | 13 | 362 | 46 | 397 | 2.76e-101 | 321 |
MS.gene013848.t1 | MTR_1g046740 | 42.980 | 349 | 195 | 3 | 14 | 361 | 93 | 438 | 1.70e-96 | 310 |
MS.gene013848.t1 | MTR_4g008010 | 38.527 | 353 | 214 | 3 | 13 | 363 | 57 | 408 | 4.80e-79 | 263 |
MS.gene013848.t1 | MTR_7g086760 | 42.775 | 173 | 78 | 5 | 589 | 756 | 35 | 191 | 8.23e-28 | 115 |
MS.gene013848.t1 | MTR_7g086580 | 31.276 | 243 | 72 | 5 | 613 | 845 | 1 | 158 | 3.95e-15 | 74.7 |
MS.gene013848.t1 | MTR_4g077600 | 48.214 | 56 | 29 | 0 | 129 | 184 | 5 | 60 | 5.47e-12 | 67.0 |
MS.gene013848.t1 | MTR_4g036245 | 47.458 | 59 | 31 | 0 | 24 | 82 | 6 | 64 | 1.15e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013848.t1 | AT3G03690 | 75.254 | 295 | 72 | 1 | 9 | 303 | 47 | 340 | 2.82e-165 | 487 |
MS.gene013848.t1 | AT4G27480 | 57.925 | 347 | 140 | 3 | 17 | 362 | 80 | 421 | 9.94e-147 | 441 |
MS.gene013848.t1 | AT4G27480 | 57.925 | 347 | 140 | 3 | 17 | 362 | 80 | 421 | 9.94e-147 | 441 |
MS.gene013848.t1 | AT4G27480 | 57.925 | 347 | 140 | 3 | 17 | 362 | 80 | 421 | 9.94e-147 | 441 |
MS.gene013848.t1 | AT3G15350 | 57.880 | 349 | 139 | 5 | 17 | 362 | 81 | 424 | 2.42e-140 | 424 |
MS.gene013848.t1 | AT3G15350 | 57.880 | 349 | 139 | 5 | 17 | 362 | 81 | 424 | 2.42e-140 | 424 |
MS.gene013848.t1 | AT5G39990 | 54.648 | 355 | 160 | 1 | 9 | 362 | 93 | 447 | 3.76e-139 | 422 |
MS.gene013848.t1 | AT1G03520 | 55.556 | 351 | 149 | 5 | 14 | 361 | 11 | 357 | 1.19e-136 | 412 |
MS.gene013848.t1 | AT4G03340 | 56.034 | 348 | 146 | 6 | 17 | 361 | 104 | 447 | 4.63e-136 | 414 |
MS.gene013848.t1 | AT1G03520 | 55.556 | 351 | 149 | 5 | 14 | 361 | 100 | 446 | 1.45e-135 | 413 |
MS.gene013848.t1 | AT5G15050 | 54.467 | 347 | 157 | 1 | 17 | 362 | 88 | 434 | 2.73e-134 | 409 |
MS.gene013848.t1 | AT1G53100 | 56.196 | 347 | 143 | 6 | 17 | 361 | 83 | 422 | 1.23e-133 | 407 |
MS.gene013848.t1 | AT1G53100 | 57.784 | 334 | 132 | 6 | 17 | 348 | 83 | 409 | 8.25e-132 | 402 |
MS.gene013848.t1 | AT4G03340 | 52.299 | 348 | 136 | 7 | 17 | 361 | 104 | 424 | 1.23e-120 | 373 |
MS.gene013848.t1 | AT3G09360 | 42.912 | 522 | 261 | 10 | 363 | 856 | 22 | 534 | 2.51e-117 | 370 |
MS.gene013848.t1 | AT3G09360 | 42.912 | 522 | 261 | 10 | 363 | 856 | 22 | 534 | 2.51e-117 | 370 |
MS.gene013848.t1 | AT3G09360 | 43.026 | 509 | 254 | 9 | 363 | 843 | 22 | 522 | 4.49e-116 | 365 |
MS.gene013848.t1 | AT2G37585 | 48.991 | 347 | 155 | 4 | 17 | 362 | 59 | 384 | 1.07e-114 | 356 |
MS.gene013848.t1 | AT2G45100 | 39.558 | 498 | 268 | 10 | 364 | 856 | 23 | 492 | 3.56e-104 | 335 |
MS.gene013848.t1 | AT2G45100 | 39.558 | 498 | 268 | 10 | 364 | 856 | 23 | 492 | 3.56e-104 | 335 |
MS.gene013848.t1 | AT2G45100 | 39.558 | 498 | 268 | 10 | 364 | 856 | 23 | 492 | 3.56e-104 | 335 |
MS.gene013848.t1 | AT1G71070 | 43.059 | 353 | 196 | 3 | 13 | 362 | 45 | 395 | 2.40e-98 | 313 |
MS.gene013848.t1 | AT3G24040 | 41.761 | 352 | 202 | 3 | 12 | 361 | 64 | 414 | 9.57e-96 | 307 |
MS.gene013848.t1 | AT2G01280 | 39.754 | 488 | 238 | 13 | 364 | 827 | 23 | 478 | 1.84e-86 | 285 |
MS.gene013848.t1 | AT2G01280 | 39.344 | 488 | 240 | 13 | 363 | 826 | 22 | 477 | 1.07e-82 | 277 |
MS.gene013848.t1 | AT2G01280 | 38.313 | 415 | 210 | 10 | 364 | 755 | 23 | 414 | 1.15e-70 | 241 |
MS.gene013848.t1 | AT3G03690 | 72.414 | 145 | 39 | 1 | 9 | 153 | 47 | 190 | 3.05e-67 | 223 |
MS.gene013848.t1 | AT1G30455 | 35.429 | 175 | 81 | 5 | 670 | 843 | 74 | 217 | 5.92e-12 | 67.4 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAATTTATGAAGCAAATT+TGG | 0.159053 | 7.1:-18739701 | MS.gene013848:CDS |
TGAATCAAATAGTAGTTATT+TGG | 0.198310 | 7.1:+18756451 | None:intergenic |
ATCAAGTAAGCAAAAGTAAT+TGG | 0.205146 | 7.1:+18756532 | None:intergenic |
AGCTGCTGCAGCTGCTTCCT+TGG | 0.214061 | 7.1:+18739729 | None:intergenic |
TATTTGATTCACATGGATTA+TGG | 0.248998 | 7.1:-18756439 | MS.gene013848:CDS |
TCATCGTTTGCTCGCATATA+TGG | 0.266847 | 7.1:+18742010 | None:intergenic |
AGCCTTACAGGAAGATAATA+TGG | 0.275857 | 7.1:-18739934 | MS.gene013848:CDS |
ACTTAAAGATTATAGGAAAA+TGG | 0.276934 | 7.1:-18752547 | MS.gene013848:CDS |
GTGATACTGTGAAGCTAAAA+AGG | 0.282977 | 7.1:-18756495 | MS.gene013848:CDS |
TAATTATAACCATCTTCTTC+AGG | 0.283912 | 7.1:+18737030 | None:intergenic |
CACATAGTCCAAGTGCAAAA+TGG | 0.287747 | 7.1:+18741725 | None:intergenic |
GCCTCAATAAATCAGATATT+TGG | 0.288968 | 7.1:-18755689 | MS.gene013848:CDS |
TAGATCAAATCGTACTTTCT+TGG | 0.291217 | 7.1:+18737152 | None:intergenic |
ATGAGGAAGAGAAGCCTTAC+AGG | 0.306360 | 7.1:-18739946 | MS.gene013848:CDS |
CCTCTATAGGTTACAAGATT+AGG | 0.307603 | 7.1:+18756325 | None:intergenic |
GAAAATTCAATAAGAAAGTA+TGG | 0.316949 | 7.1:+18746197 | None:intergenic |
AGTTAGATGCTTCACGTAAA+AGG | 0.317279 | 7.1:-18748616 | MS.gene013848:CDS |
GACACGGTCTCGGGAGGATT+TGG | 0.325691 | 7.1:-18741589 | MS.gene013848:CDS |
GGGAGGATTTGGTGGTGGTT+TGG | 0.338991 | 7.1:-18741578 | MS.gene013848:CDS |
TGTTTAATAGAGCAAAATAT+CGG | 0.340160 | 7.1:-18748663 | MS.gene013848:intron |
TGCATTCCAGCGAGCTGAAC+AGG | 0.340722 | 7.1:-18741548 | MS.gene013848:CDS |
TTTGTTAAACAAAATCCTTA+TGG | 0.342506 | 7.1:-18752316 | MS.gene013848:CDS |
GCTTACAGCTTCTAAAGAAA+TGG | 0.345137 | 7.1:-18748170 | MS.gene013848:intron |
ATTGGAAATGTTTGGATTGT+TGG | 0.347542 | 7.1:-18756352 | MS.gene013848:CDS |
AGAGACCTAGGATGTTGTTT+TGG | 0.350611 | 7.1:+18752573 | None:intergenic |
GATTTGCTTGGCCATAGAAA+TGG | 0.350863 | 7.1:-18745482 | MS.gene013848:CDS |
TTAGTCAAATTGGAAATGTT+TGG | 0.350922 | 7.1:-18756360 | MS.gene013848:CDS |
CTGTTTACCTACACTGCATT+TGG | 0.352059 | 7.1:+18752280 | None:intergenic |
CGTGTCTTTATCTTGCATTC+CGG | 0.358135 | 7.1:-18747920 | MS.gene013848:intron |
GCTCAGTAACAAAGTCAATA+TGG | 0.359169 | 7.1:-18737720 | MS.gene013848:CDS |
AGTCAAGAAAACAAATTCTA+AGG | 0.361498 | 7.1:-18741521 | MS.gene013848:CDS |
CAGAGACAACCCCATTTCTA+TGG | 0.363090 | 7.1:+18745471 | None:intergenic |
ACATCTTTATGTTCTGCATC+TGG | 0.364339 | 7.1:+18756412 | None:intergenic |
CTCTCTCCTGTTCAGCTCGC+TGG | 0.366469 | 7.1:+18741542 | None:intergenic |
TGATAATCACGATGATGAAC+TGG | 0.367329 | 7.1:-18737124 | MS.gene013848:CDS |
AGATCAAATCGTACTTTCTT+GGG | 0.368877 | 7.1:+18737153 | None:intergenic |
GGTTTGAGAACTGAGAATTA+TGG | 0.376756 | 7.1:-18752378 | MS.gene013848:CDS |
TGCAGCTTTGTGAAGTGTTA+AGG | 0.378656 | 7.1:-18746036 | MS.gene013848:CDS |
ACTGTTTGGAAATATCCTTC+TGG | 0.379198 | 7.1:+18752669 | None:intergenic |
CTCTAGGACTTAAAGATTAT+AGG | 0.380227 | 7.1:-18752554 | MS.gene013848:CDS |
ACATAGTCCAAGTGCAAAAT+GGG | 0.386704 | 7.1:+18741726 | None:intergenic |
AAGCATAGTTGGTCCTCTAT+AGG | 0.387489 | 7.1:+18756312 | None:intergenic |
TTGGTATAATAATGAAAATA+TGG | 0.391550 | 7.1:-18737067 | MS.gene013848:CDS |
GCCTCTGCAGCAGATTGAGC+AGG | 0.395396 | 7.1:+18737969 | None:intergenic |
ATTTGCTTGGCCATAGAAAT+GGG | 0.398488 | 7.1:-18745481 | MS.gene013848:CDS |
ATGATCTTCACTACATTACT+TGG | 0.398716 | 7.1:-18752605 | MS.gene013848:CDS |
CCTAATCTTGTAACCTATAG+AGG | 0.412622 | 7.1:-18756325 | MS.gene013848:CDS |
TTACTGTTTGGCATTACAAC+CGG | 0.417781 | 7.1:+18741805 | None:intergenic |
TCCCATATTATCTTCCTGTA+AGG | 0.418087 | 7.1:+18739932 | None:intergenic |
TAGCTTCACAGTATCACCTT+TGG | 0.422084 | 7.1:+18756501 | None:intergenic |
AGCCTTCTTGAGCCAGGACC+AGG | 0.423280 | 7.1:+18752345 | None:intergenic |
GATCCGTTGAATTTACTGTT+TGG | 0.423755 | 7.1:+18741793 | None:intergenic |
TGCTTCTTAAGACATGTCAT+TGG | 0.425258 | 7.1:-18756264 | MS.gene013848:CDS |
TTAAGACATGTCATTGGGAT+TGG | 0.429628 | 7.1:-18756258 | MS.gene013848:CDS |
TCAGGGTTTGTACATCTTGT+GGG | 0.430358 | 7.1:-18749904 | MS.gene013848:intron |
TTGGAAATGTTTGGATTGTT+GGG | 0.430567 | 7.1:-18756351 | MS.gene013848:CDS |
GAGATGTGGTCCGCCAAGCT+AGG | 0.437701 | 7.1:-18748114 | MS.gene013848:CDS |
TTTGGAGGGTGGTGTTCTCA+AGG | 0.438791 | 7.1:-18752423 | MS.gene013848:CDS |
AGATAAAGAGAAGGATCAAT+AGG | 0.439509 | 7.1:+18745986 | None:intergenic |
AGTAATTGGGTATGTTATGT+TGG | 0.441095 | 7.1:+18756546 | None:intergenic |
AATTATAACCATCTTCTTCA+GGG | 0.445106 | 7.1:+18737031 | None:intergenic |
GAAGCCAATGATTATAGATC+CGG | 0.446842 | 7.1:-18755721 | MS.gene013848:CDS |
GGTTTGCTTAAACCTGGTCC+TGG | 0.447605 | 7.1:-18752357 | MS.gene013848:CDS |
GTCAGGGTTTGTACATCTTG+TGG | 0.447838 | 7.1:-18749905 | MS.gene013848:intron |
GCTTCTTAAGACATGTCATT+GGG | 0.449821 | 7.1:-18756263 | MS.gene013848:CDS |
GCTTCTCTTCCTCATTGAAA+AGG | 0.451934 | 7.1:+18739954 | None:intergenic |
TTGAGGATGGTGACAATGAT+TGG | 0.452380 | 7.1:-18737086 | MS.gene013848:CDS |
TGCAGAGGCTGCTTGCCAAA+TGG | 0.454248 | 7.1:-18737955 | MS.gene013848:CDS |
GACGTAAATCAGAGCAAGTA+CGG | 0.455951 | 7.1:-18747947 | MS.gene013848:CDS |
AGTGTGTGAGCACAAAGAAA+TGG | 0.459697 | 7.1:-18741755 | MS.gene013848:CDS |
TCAAGTAAGCAAAAGTAATT+GGG | 0.460700 | 7.1:+18756533 | None:intergenic |
ACGGAAGCTCAAGATGAATC+AGG | 0.460758 | 7.1:-18741027 | MS.gene013848:CDS |
GCCTGCTCAATCTGCTGCAG+AGG | 0.461546 | 7.1:-18737970 | MS.gene013848:CDS |
ACCAAATATCTGATTTATTG+AGG | 0.463913 | 7.1:+18755688 | None:intergenic |
ATATTAACATACTTCATAGA+AGG | 0.466151 | 7.1:+18748090 | None:intergenic |
GGTTTACATGTAGATTTGCT+TGG | 0.467201 | 7.1:-18745494 | MS.gene013848:intron |
AATGAACCGTGACTGGTTGC+AGG | 0.469326 | 7.1:-18745423 | MS.gene013848:intron |
TGTTCAGCTCGCTGGAATGC+AGG | 0.470422 | 7.1:+18741550 | None:intergenic |
CGTAAAAGGACTTTATATAG+AGG | 0.475221 | 7.1:-18748602 | MS.gene013848:intron |
TTGCTCTGATTTACGTCCTC+GGG | 0.475642 | 7.1:+18747953 | None:intergenic |
TTACGCAAATGAACCGTGAC+TGG | 0.476466 | 7.1:-18745430 | MS.gene013848:CDS |
GTGAGTTGCATATTACTGTT+TGG | 0.477123 | 7.1:+18752655 | None:intergenic |
TTGTTGTGCAGTTATGAGCT+TGG | 0.479081 | 7.1:-18746070 | MS.gene013848:intron |
CTGAGTATTGCATCGTGGGA+TGG | 0.479349 | 7.1:-18752743 | MS.gene013848:CDS |
GTAACTTACAATATCTCGCT+TGG | 0.480813 | 7.1:+18745184 | None:intergenic |
ATACAACATAGTAGTCGCTT+GGG | 0.482462 | 7.1:-18755876 | MS.gene013848:CDS |
TAGTGCTTCTGATTATCCCT+TGG | 0.482480 | 7.1:-18756224 | MS.gene013848:CDS |
TTACAGTTTGACACGGTCTC+GGG | 0.482762 | 7.1:-18741598 | MS.gene013848:intron |
TATCCCTTGGTTACACAAGA+TGG | 0.484610 | 7.1:-18756211 | MS.gene013848:intron |
TCATATTTCCCTGAAGAAGA+TGG | 0.486824 | 7.1:-18737039 | MS.gene013848:CDS |
CATACAACATAGTAGTCGCT+TGG | 0.491200 | 7.1:-18755877 | MS.gene013848:CDS |
GTCTCGGGAGGATTTGGTGG+TGG | 0.492886 | 7.1:-18741583 | MS.gene013848:CDS |
TACAGCTCTCTTGATTCCAC+TGG | 0.493925 | 7.1:+18739670 | None:intergenic |
CAACAGACAGGGAGGAAACC+TGG | 0.495698 | 7.1:-18745263 | MS.gene013848:intron |
AGAGTAGTTGCAAGCATAGT+TGG | 0.496093 | 7.1:+18756301 | None:intergenic |
TGAGTATTGCATCGTGGGAT+GGG | 0.496769 | 7.1:-18752742 | MS.gene013848:CDS |
AAACAACATCCTAGGTCTCT+AGG | 0.497584 | 7.1:-18752570 | MS.gene013848:CDS |
AGTCCCGGATCTATAATCAT+TGG | 0.502409 | 7.1:+18755717 | None:intergenic |
CTTGCTCTGATTTACGTCCT+CGG | 0.506138 | 7.1:+18747952 | None:intergenic |
GATGGTTATAATTATGATGA+GGG | 0.508705 | 7.1:-18737021 | MS.gene013848:CDS |
AATTATGGTTTGCTTAAACC+TGG | 0.512607 | 7.1:-18752363 | MS.gene013848:CDS |
TTTACAGTTTGACACGGTCT+CGG | 0.512800 | 7.1:-18741599 | MS.gene013848:intron |
TAGTAGAGGAGTAGAGTCCT+TGG | 0.516432 | 7.1:+18752711 | None:intergenic |
ACGGTCTCGGGAGGATTTGG+TGG | 0.517103 | 7.1:-18741586 | MS.gene013848:CDS |
AGACAAAGTTAGTGTAGTAG+AGG | 0.518512 | 7.1:+18752697 | None:intergenic |
CTTTGTGCTCACACACTAGA+GGG | 0.519934 | 7.1:+18741761 | None:intergenic |
GGCATCAAATAGCGCATGCA+AGG | 0.523242 | 7.1:-18741067 | MS.gene013848:CDS |
CATAGAAGGCCCTAGCTTGG+CGG | 0.525773 | 7.1:+18748104 | None:intergenic |
AGATGTGGTCCGCCAAGCTA+GGG | 0.529307 | 7.1:-18748113 | MS.gene013848:CDS |
CTTTCAGGAGCAAGCAGCCA+AGG | 0.531731 | 7.1:-18739746 | MS.gene013848:intron |
AAATAGCGCATGCAAGGGAG+GGG | 0.532095 | 7.1:-18741061 | MS.gene013848:CDS |
TTCTGTGGCAAAATCAAGAA+AGG | 0.534234 | 7.1:-18739632 | MS.gene013848:intron |
TGTATGAAATTAATATCCCT+TGG | 0.534880 | 7.1:+18755894 | None:intergenic |
GAATATTTAAGTCTCAGCCT+TGG | 0.535149 | 7.1:-18748148 | MS.gene013848:CDS |
GCCTTACAGGAAGATAATAT+GGG | 0.537814 | 7.1:-18739933 | MS.gene013848:CDS |
GGAAAGAACAAAGCATGCTC+AGG | 0.540430 | 7.1:-18752399 | MS.gene013848:CDS |
ATCCTCCAAAACAACATCCT+AGG | 0.540904 | 7.1:-18752578 | MS.gene013848:CDS |
TTGCCAAATGGTGAAAAGAA+AGG | 0.548531 | 7.1:-18737943 | MS.gene013848:intron |
TTGTGCAGTTATGAGCTTGG+AGG | 0.548966 | 7.1:-18746067 | MS.gene013848:intron |
TCAATAAATCAGATATTTGG+TGG | 0.549278 | 7.1:-18755686 | MS.gene013848:CDS |
GTGTATAGTTTAAAAGATGT+TGG | 0.550401 | 7.1:+18755642 | None:intergenic |
CTTCATAGAAGGCCCTAGCT+TGG | 0.550801 | 7.1:+18748101 | None:intergenic |
AACATAGTAGTCGCTTGGGT+TGG | 0.552754 | 7.1:-18755872 | MS.gene013848:CDS |
GTTTAATAGAGCAAAATATC+GGG | 0.553849 | 7.1:-18748662 | MS.gene013848:intron |
TGAATCTACCTCAGCTTCTG+TGG | 0.555464 | 7.1:-18739647 | MS.gene013848:CDS |
CAAATAGCGCATGCAAGGGA+GGG | 0.557985 | 7.1:-18741062 | MS.gene013848:CDS |
CGATGATGAACTGGGATCAG+CGG | 0.561005 | 7.1:-18737115 | MS.gene013848:CDS |
CACAAAATTCAGGTTCAGCA+TGG | 0.562912 | 7.1:-18752788 | MS.gene013848:intron |
TCTTTAAGTCCTAGAGACCT+AGG | 0.565974 | 7.1:+18752561 | None:intergenic |
ACGTAAATCAGAGCAAGTAC+GGG | 0.566647 | 7.1:-18747946 | MS.gene013848:CDS |
TCAAATAGCGCATGCAAGGG+AGG | 0.567776 | 7.1:-18741063 | MS.gene013848:CDS |
AATGTAGTGAAGATCATGGT+TGG | 0.568469 | 7.1:+18752611 | None:intergenic |
TAACTACTATTTGATTCACA+TGG | 0.570348 | 7.1:-18756446 | MS.gene013848:CDS |
TTTAGTAAAAGTCGGCTCCT+CGG | 0.570896 | 7.1:+18749856 | None:intergenic |
CTCAGCCTTGGAGTAAGTGA+GGG | 0.572595 | 7.1:-18748136 | MS.gene013848:CDS |
GGTTTGTACATCTTGTGGGA+AGG | 0.574175 | 7.1:-18749900 | MS.gene013848:CDS |
TACATCTTGTGGGAAGGTGT+TGG | 0.574735 | 7.1:-18749894 | MS.gene013848:CDS |
TCTCAGCCTTGGAGTAAGTG+AGG | 0.575387 | 7.1:-18748137 | MS.gene013848:CDS |
TGATCTTCACTACATTACTT+GGG | 0.576959 | 7.1:-18752604 | MS.gene013848:CDS |
TACTTGATCTCTGCATCCAA+AGG | 0.577475 | 7.1:-18756517 | MS.gene013848:CDS |
TGCAACTACTCTTCATGCCA+TGG | 0.578383 | 7.1:-18756290 | MS.gene013848:CDS |
AGATGGTTATAATTATGATG+AGG | 0.579920 | 7.1:-18737022 | MS.gene013848:CDS |
TTATTGAGGCTATAAAGTCC+CGG | 0.581620 | 7.1:+18755702 | None:intergenic |
TCTTTGTGCTCACACACTAG+AGG | 0.582080 | 7.1:+18741760 | None:intergenic |
CAGTCACCTGCAACCAGTCA+CGG | 0.587214 | 7.1:+18745417 | None:intergenic |
AAATTTGATAAAAGCAGTTG+AGG | 0.589359 | 7.1:-18748639 | MS.gene013848:CDS |
TCAGCTCGCTGGAATGCAGG+AGG | 0.591458 | 7.1:+18741553 | None:intergenic |
CTCTGATATTGATGACCAAG+AGG | 0.592332 | 7.1:-18740998 | MS.gene013848:intron |
GGGAGGGGATGACACTAGTA+CGG | 0.593649 | 7.1:-18741046 | MS.gene013848:CDS |
AAGTAATGTAGTGAAGATCA+TGG | 0.594031 | 7.1:+18752607 | None:intergenic |
AACCTGGTCCTGGCTCAAGA+AGG | 0.597108 | 7.1:-18752347 | MS.gene013848:CDS |
AAGCCAATGATTATAGATCC+GGG | 0.597644 | 7.1:-18755720 | MS.gene013848:CDS |
TTTGGTGGATCATTAAGCAA+AGG | 0.597939 | 7.1:-18755671 | MS.gene013848:CDS |
TGGAGTAAGTGAGGGAGATG+TGG | 0.601914 | 7.1:-18748128 | MS.gene013848:CDS |
GTGAAGATCATGGTTGGCAG+TGG | 0.602943 | 7.1:+18752617 | None:intergenic |
GATAATCACGATGATGAACT+GGG | 0.603034 | 7.1:-18737123 | MS.gene013848:CDS |
TTTGTGCTCACACACTAGAG+GGG | 0.608810 | 7.1:+18741762 | None:intergenic |
CAGTTTGACACGGTCTCGGG+AGG | 0.610904 | 7.1:-18741595 | MS.gene013848:CDS |
TATTTATGAAGATAAAGAGA+AGG | 0.612010 | 7.1:+18745977 | None:intergenic |
AACTTTGTCTCATCACCAGA+AGG | 0.613473 | 7.1:-18752684 | MS.gene013848:CDS |
TCAGAACCGCGAGTATCTTG+AGG | 0.625907 | 7.1:-18739906 | MS.gene013848:intron |
CATCTCCCTCACTTACTCCA+AGG | 0.626580 | 7.1:+18748131 | None:intergenic |
ACTATGTGAAACTTGTTACA+AGG | 0.628752 | 7.1:-18741710 | MS.gene013848:CDS |
CAGCTCGCTGGAATGCAGGA+GGG | 0.634000 | 7.1:+18741554 | None:intergenic |
CATACCATCTTGTGTAACCA+AGG | 0.634114 | 7.1:+18756207 | None:intergenic |
ATGACCATGTGCATTAGCAG+AGG | 0.635109 | 7.1:+18745214 | None:intergenic |
TGGGATGGGAAAATCTGCCA+AGG | 0.635256 | 7.1:-18752728 | MS.gene013848:CDS |
ATGCCAAACAGTAAATTCAA+CGG | 0.635396 | 7.1:-18741796 | MS.gene013848:CDS |
GGAGGGTGGTGTTCTCAAGG+TGG | 0.638629 | 7.1:-18752420 | MS.gene013848:CDS |
GCAGCAGCAAATAATCCACC+AGG | 0.647321 | 7.1:+18745245 | None:intergenic |
GCATCAAATAGCGCATGCAA+GGG | 0.649630 | 7.1:-18741066 | MS.gene013848:CDS |
TTTGCTTGGCCATAGAAATG+GGG | 0.652044 | 7.1:-18745480 | MS.gene013848:CDS |
TACACCTCTGCTAATGCACA+TGG | 0.652050 | 7.1:-18745218 | MS.gene013848:CDS |
AACTTCAATTACCTGTCCGG+CGG | 0.654079 | 7.1:+18749829 | None:intergenic |
AGATGCAGAACATAAAGATG+TGG | 0.654179 | 7.1:-18756410 | MS.gene013848:CDS |
TGTCTTAAGAAGCATTGCCA+TGG | 0.655282 | 7.1:+18756273 | None:intergenic |
ATACCATCTTGTGTAACCAA+GGG | 0.666206 | 7.1:+18756208 | None:intergenic |
CATAGTCCAAGTGCAAAATG+GGG | 0.677751 | 7.1:+18741727 | None:intergenic |
TCTGTACCTCAAGATACTCG+CGG | 0.681039 | 7.1:+18739900 | None:intergenic |
GATACATTTACAGTTTGACA+CGG | 0.682926 | 7.1:-18741605 | MS.gene013848:intron |
AAATTTGGAAAATTGTCCAG+TGG | 0.694574 | 7.1:-18739686 | MS.gene013848:CDS |
ACGTTTGACAACAGACAGGG+AGG | 0.726160 | 7.1:-18745271 | MS.gene013848:intron |
CAGACAGGGAGGAAACCTGG+TGG | 0.787227 | 7.1:-18745260 | MS.gene013848:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 18737011 | 18756593 | 18737011 | ID=MS.gene013848 |
chr7.1 | mRNA | 18737011 | 18756593 | 18737011 | ID=MS.gene013848.t1;Parent=MS.gene013848 |
chr7.1 | exon | 18756212 | 18756593 | 18756212 | ID=MS.gene013848.t1.exon1;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18756212 | 18756593 | 18756212 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18755867 | 18755942 | 18755867 | ID=MS.gene013848.t1.exon2;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18755867 | 18755942 | 18755867 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18755640 | 18755755 | 18755640 | ID=MS.gene013848.t1.exon3;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18755640 | 18755755 | 18755640 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18752288 | 18752798 | 18752288 | ID=MS.gene013848.t1.exon4;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18752288 | 18752798 | 18752288 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18749841 | 18749922 | 18749841 | ID=MS.gene013848.t1.exon5;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18749841 | 18749922 | 18749841 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18748603 | 18748675 | 18748603 | ID=MS.gene013848.t1.exon6;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18748603 | 18748675 | 18748603 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18748102 | 18748184 | 18748102 | ID=MS.gene013848.t1.exon7;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18748102 | 18748184 | 18748102 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18747921 | 18747997 | 18747921 | ID=MS.gene013848.t1.exon8;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18747921 | 18747997 | 18747921 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18746176 | 18746232 | 18746176 | ID=MS.gene013848.t1.exon9;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18746176 | 18746232 | 18746176 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18745969 | 18746081 | 18745969 | ID=MS.gene013848.t1.exon10;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18745969 | 18746081 | 18745969 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18745424 | 18745503 | 18745424 | ID=MS.gene013848.t1.exon11;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18745424 | 18745503 | 18745424 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18745193 | 18745279 | 18745193 | ID=MS.gene013848.t1.exon12;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18745193 | 18745279 | 18745193 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18741963 | 18742043 | 18741963 | ID=MS.gene013848.t1.exon13;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18741963 | 18742043 | 18741963 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18741708 | 18741869 | 18741708 | ID=MS.gene013848.t1.exon14;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18741708 | 18741869 | 18741708 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18741510 | 18741614 | 18741510 | ID=MS.gene013848.t1.exon15;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18741510 | 18741614 | 18741510 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18740999 | 18741097 | 18740999 | ID=MS.gene013848.t1.exon16;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18740999 | 18741097 | 18740999 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18739907 | 18739987 | 18739907 | ID=MS.gene013848.t1.exon17;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18739907 | 18739987 | 18739907 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18739633 | 18739761 | 18739633 | ID=MS.gene013848.t1.exon18;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18739633 | 18739761 | 18739633 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18737944 | 18738030 | 18737944 | ID=MS.gene013848.t1.exon19;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18737944 | 18738030 | 18737944 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18737688 | 18737744 | 18737688 | ID=MS.gene013848.t1.exon20;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18737688 | 18737744 | 18737688 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
chr7.1 | exon | 18737011 | 18737190 | 18737011 | ID=MS.gene013848.t1.exon21;Parent=MS.gene013848.t1 |
chr7.1 | CDS | 18737011 | 18737190 | 18737011 | ID=cds.MS.gene013848.t1;Parent=MS.gene013848.t1 |
Gene Sequence |
Protein sequence |