Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055922.t1 | XP_024625179.1 | 93.5 | 554 | 10 | 2 | 243 | 770 | 22 | 575 | 1.50E-286 | 995.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055922.t1 | Q9FLD7 | 40.5 | 296 | 114 | 5 | 9 | 242 | 93 | 388 | 1.4e-51 | 206.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055922.t1 | G7L1K5 | 93.5 | 554 | 10 | 2 | 243 | 770 | 22 | 575 | 1.1e-286 | 995.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene87743 | MS.gene055922 | PPI |
MS.gene055922 | MS.gene042497 | PPI |
MS.gene055922 | MS.gene42075 | PPI |
MS.gene013848 | MS.gene055922 | PPI |
MS.gene055922 | MS.gene48819 | PPI |
MS.gene87893 | MS.gene055922 | PPI |
MS.gene87064 | MS.gene055922 | PPI |
MS.gene055922 | MS.gene47278 | PPI |
MS.gene76728 | MS.gene055922 | PPI |
MS.gene47278 | MS.gene055922 | PPI |
MS.gene055922 | MS.gene013848 | PPI |
MS.gene055922 | MS.gene82237 | PPI |
MS.gene055922 | MS.gene77045 | PPI |
MS.gene055922 | MS.gene55621 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055922.t1 | MTR_7g086730 | 93.502 | 554 | 10 | 2 | 243 | 770 | 22 | 575 | 0.0 | 1059 |
MS.gene055922.t1 | MTR_6g027510 | 48.867 | 618 | 225 | 14 | 234 | 770 | 15 | 622 | 3.60e-164 | 489 |
MS.gene055922.t1 | MTR_6g027510 | 48.457 | 551 | 195 | 13 | 301 | 770 | 23 | 565 | 3.14e-141 | 427 |
MS.gene055922.t1 | MTR_7g086720 | 93.939 | 132 | 8 | 0 | 1 | 132 | 38 | 169 | 3.20e-75 | 249 |
MS.gene055922.t1 | MTR_7g086720 | 64.444 | 135 | 38 | 3 | 112 | 242 | 212 | 340 | 2.59e-44 | 165 |
MS.gene055922.t1 | MTR_6g011080 | 39.384 | 292 | 113 | 6 | 14 | 242 | 84 | 374 | 8.05e-57 | 201 |
MS.gene055922.t1 | MTR_2g085300 | 39.446 | 289 | 111 | 6 | 17 | 242 | 83 | 370 | 3.43e-54 | 193 |
MS.gene055922.t1 | MTR_4g114140 | 39.721 | 287 | 111 | 5 | 18 | 242 | 76 | 362 | 1.34e-53 | 191 |
MS.gene055922.t1 | MTR_6g027550 | 85.000 | 80 | 12 | 0 | 163 | 242 | 176 | 255 | 2.11e-40 | 151 |
MS.gene055922.t1 | MTR_6g027550 | 72.840 | 81 | 22 | 0 | 49 | 129 | 1 | 81 | 5.11e-37 | 142 |
MS.gene055922.t1 | MTR_0072s0020 | 57.265 | 117 | 49 | 1 | 17 | 132 | 89 | 205 | 1.20e-35 | 140 |
MS.gene055922.t1 | MTR_0072s0020 | 60.494 | 81 | 32 | 0 | 163 | 243 | 297 | 377 | 1.16e-26 | 114 |
MS.gene055922.t1 | MTR_4g022240 | 52.991 | 117 | 54 | 1 | 17 | 132 | 73 | 189 | 2.62e-35 | 139 |
MS.gene055922.t1 | MTR_4g022240 | 49.505 | 101 | 48 | 1 | 163 | 260 | 281 | 381 | 2.89e-24 | 106 |
MS.gene055922.t1 | MTR_7g086760 | 40.698 | 172 | 71 | 5 | 465 | 621 | 36 | 191 | 2.60e-27 | 113 |
MS.gene055922.t1 | MTR_0662s0030 | 62.667 | 75 | 28 | 0 | 168 | 242 | 189 | 263 | 1.38e-26 | 110 |
MS.gene055922.t1 | MTR_0662s0030 | 60.000 | 75 | 29 | 1 | 57 | 130 | 16 | 90 | 7.49e-22 | 97.1 |
MS.gene055922.t1 | MTR_1g046740 | 45.000 | 120 | 65 | 1 | 14 | 132 | 93 | 212 | 2.42e-26 | 113 |
MS.gene055922.t1 | MTR_1g108280 | 45.455 | 121 | 65 | 1 | 13 | 132 | 46 | 166 | 1.38e-25 | 110 |
MS.gene055922.t1 | MTR_1g108280 | 51.948 | 77 | 37 | 0 | 166 | 242 | 261 | 337 | 3.75e-18 | 87.8 |
MS.gene055922.t1 | MTR_7g086580 | 35.193 | 233 | 66 | 4 | 488 | 710 | 1 | 158 | 6.34e-24 | 99.8 |
MS.gene055922.t1 | MTR_4g008010 | 47.414 | 116 | 60 | 1 | 13 | 127 | 57 | 172 | 1.24e-20 | 95.5 |
MS.gene055922.t1 | MTR_4g036245 | 45.763 | 59 | 32 | 0 | 24 | 82 | 6 | 64 | 4.56e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055922.t1 | AT3G09360 | 41.954 | 522 | 251 | 10 | 243 | 721 | 22 | 534 | 6.86e-112 | 353 |
MS.gene055922.t1 | AT3G09360 | 41.954 | 522 | 251 | 10 | 243 | 721 | 22 | 534 | 6.86e-112 | 353 |
MS.gene055922.t1 | AT3G09360 | 42.126 | 508 | 243 | 9 | 244 | 708 | 23 | 522 | 1.28e-110 | 347 |
MS.gene055922.t1 | AT2G45100 | 39.425 | 487 | 269 | 10 | 244 | 721 | 23 | 492 | 1.40e-101 | 324 |
MS.gene055922.t1 | AT2G45100 | 39.425 | 487 | 269 | 10 | 244 | 721 | 23 | 492 | 1.40e-101 | 324 |
MS.gene055922.t1 | AT2G45100 | 39.425 | 487 | 269 | 10 | 244 | 721 | 23 | 492 | 1.40e-101 | 324 |
MS.gene055922.t1 | AT2G01280 | 37.705 | 488 | 233 | 13 | 244 | 692 | 23 | 478 | 2.23e-80 | 266 |
MS.gene055922.t1 | AT2G01280 | 37.295 | 488 | 235 | 13 | 243 | 691 | 22 | 477 | 9.63e-77 | 258 |
MS.gene055922.t1 | AT3G03690 | 47.458 | 295 | 93 | 5 | 9 | 242 | 47 | 340 | 3.27e-76 | 251 |
MS.gene055922.t1 | AT1G53100 | 43.206 | 287 | 103 | 4 | 17 | 243 | 83 | 369 | 2.09e-66 | 226 |
MS.gene055922.t1 | AT1G53100 | 43.206 | 287 | 103 | 4 | 17 | 243 | 83 | 369 | 2.44e-66 | 226 |
MS.gene055922.t1 | AT2G01280 | 36.145 | 415 | 204 | 11 | 244 | 620 | 23 | 414 | 1.35e-64 | 223 |
MS.gene055922.t1 | AT5G15050 | 39.931 | 288 | 111 | 4 | 17 | 242 | 88 | 375 | 2.53e-57 | 202 |
MS.gene055922.t1 | AT5G39990 | 39.394 | 297 | 116 | 6 | 9 | 242 | 93 | 388 | 1.22e-55 | 198 |
MS.gene055922.t1 | AT3G03690 | 70.248 | 121 | 35 | 1 | 9 | 129 | 47 | 166 | 2.11e-51 | 178 |
MS.gene055922.t1 | AT4G27480 | 60.526 | 114 | 44 | 1 | 17 | 129 | 80 | 193 | 9.95e-38 | 146 |
MS.gene055922.t1 | AT4G27480 | 58.667 | 75 | 31 | 0 | 168 | 242 | 293 | 367 | 1.60e-24 | 107 |
MS.gene055922.t1 | AT4G27480 | 60.526 | 114 | 44 | 1 | 17 | 129 | 80 | 193 | 9.95e-38 | 146 |
MS.gene055922.t1 | AT4G27480 | 58.667 | 75 | 31 | 0 | 168 | 242 | 293 | 367 | 1.60e-24 | 107 |
MS.gene055922.t1 | AT4G27480 | 60.526 | 114 | 44 | 1 | 17 | 129 | 80 | 193 | 9.95e-38 | 146 |
MS.gene055922.t1 | AT4G27480 | 58.667 | 75 | 31 | 0 | 168 | 242 | 293 | 367 | 1.60e-24 | 107 |
MS.gene055922.t1 | AT3G15350 | 58.772 | 114 | 46 | 1 | 17 | 129 | 81 | 194 | 4.42e-37 | 144 |
MS.gene055922.t1 | AT3G15350 | 45.113 | 133 | 56 | 3 | 163 | 291 | 289 | 408 | 9.69e-26 | 111 |
MS.gene055922.t1 | AT3G15350 | 58.772 | 114 | 46 | 1 | 17 | 129 | 81 | 194 | 4.42e-37 | 144 |
MS.gene055922.t1 | AT3G15350 | 45.113 | 133 | 56 | 3 | 163 | 291 | 289 | 408 | 9.69e-26 | 111 |
MS.gene055922.t1 | AT1G03520 | 51.667 | 120 | 57 | 1 | 14 | 132 | 11 | 130 | 7.73e-35 | 136 |
MS.gene055922.t1 | AT1G03520 | 64.198 | 81 | 29 | 0 | 163 | 243 | 222 | 302 | 2.63e-28 | 117 |
MS.gene055922.t1 | AT1G03520 | 51.667 | 120 | 57 | 1 | 14 | 132 | 100 | 219 | 2.52e-34 | 137 |
MS.gene055922.t1 | AT1G03520 | 64.198 | 81 | 29 | 0 | 163 | 243 | 311 | 391 | 1.06e-27 | 117 |
MS.gene055922.t1 | AT4G03340 | 54.701 | 117 | 52 | 1 | 17 | 132 | 104 | 220 | 8.48e-34 | 135 |
MS.gene055922.t1 | AT4G03340 | 62.963 | 81 | 30 | 0 | 163 | 243 | 312 | 392 | 1.08e-27 | 117 |
MS.gene055922.t1 | AT2G37585 | 52.137 | 117 | 53 | 2 | 17 | 132 | 59 | 173 | 1.22e-31 | 128 |
MS.gene055922.t1 | AT2G37585 | 52.874 | 87 | 38 | 2 | 161 | 247 | 265 | 348 | 1.26e-20 | 95.1 |
MS.gene055922.t1 | AT4G03340 | 62.963 | 81 | 30 | 0 | 163 | 243 | 289 | 369 | 8.63e-28 | 117 |
MS.gene055922.t1 | AT4G03340 | 43.590 | 117 | 42 | 2 | 17 | 132 | 104 | 197 | 2.03e-20 | 95.1 |
MS.gene055922.t1 | AT3G24040 | 44.262 | 122 | 67 | 1 | 12 | 132 | 64 | 185 | 5.29e-26 | 112 |
MS.gene055922.t1 | AT1G71070 | 42.975 | 121 | 68 | 1 | 13 | 132 | 45 | 165 | 3.80e-23 | 103 |
MS.gene055922.t1 | AT1G71070 | 48.750 | 80 | 41 | 0 | 163 | 242 | 257 | 336 | 1.98e-19 | 91.7 |
MS.gene055922.t1 | AT1G30455 | 37.576 | 165 | 81 | 5 | 545 | 708 | 74 | 217 | 1.77e-13 | 71.6 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAATTTATGAAGCAAATT+TGG | 0.159053 | 7.3:-22142506 | MS.gene055922:CDS |
CCTCTATAAGTTACCAAATT+AGG | 0.185633 | 7.3:+22158358 | None:intergenic |
TGAATCAAATAGTAGTTATT+TGG | 0.198310 | 7.3:+22158484 | None:intergenic |
ATCAAGTAAGCAAAAGTAAT+TGG | 0.205146 | 7.3:+22158565 | None:intergenic |
AGCTGCTGCAGCTGCTTCCT+TGG | 0.214061 | 7.3:+22142534 | None:intergenic |
GATTGTTGGGAAGCCTAATT+TGG | 0.234769 | 7.3:-22158371 | MS.gene055922:CDS |
TATTTGATTCACATGGATTA+TGG | 0.248998 | 7.3:-22158472 | MS.gene055922:CDS |
TCATCGTTTGCTCGCATATA+TGG | 0.266847 | 7.3:+22144814 | None:intergenic |
ACTTAAAGATTATAGGAAAA+TGG | 0.267063 | 7.3:-22154640 | MS.gene055922:CDS |
AGCCTTACAGGAAGATAATA+TGG | 0.275857 | 7.3:-22142739 | MS.gene055922:CDS |
TAATTATAACCATCTTCTTC+AGG | 0.283912 | 7.3:+22139822 | None:intergenic |
CACATAGTCCAAGTGCAAAA+TGG | 0.287747 | 7.3:+22144550 | None:intergenic |
TAGATCAAATCGTACTTTCT+TGG | 0.291217 | 7.3:+22139944 | None:intergenic |
ATGAGGAAGAGAAGCCTTAC+AGG | 0.306360 | 7.3:-22142751 | MS.gene055922:CDS |
GAAAATTCAATAAGAAAGTA+TGG | 0.316949 | 7.3:+22147674 | None:intergenic |
AGTTAGATGCTTCACGTAAA+AGG | 0.317279 | 7.3:-22149932 | MS.gene055922:CDS |
TGTTTAATAGAGCAAAATAT+CGG | 0.340160 | 7.3:-22149979 | MS.gene055922:intron |
TGCATTCCAGCGAGCTGAAC+AGG | 0.340722 | 7.3:-22144373 | MS.gene055922:CDS |
GGGAGGATTCGGTGGTGGTT+TGG | 0.343519 | 7.3:-22144403 | MS.gene055922:CDS |
GCTTACAGCTTCTAAAGAAA+TGG | 0.345137 | 7.3:-22149486 | MS.gene055922:intron |
AGAGACCTAGGATGTTGTTT+TGG | 0.350611 | 7.3:+22154666 | None:intergenic |
GATTTGCTTGGCCATAGAAA+TGG | 0.350863 | 7.3:-22146991 | MS.gene055922:CDS |
TGATAATCAGGAGGATGAAC+TGG | 0.351465 | 7.3:-22139916 | MS.gene055922:CDS |
CGTGTCTTTATCTTGCATTC+CGG | 0.358135 | 7.3:-22149236 | MS.gene055922:intron |
GCTCAGTAACAAAGTCAATA+TGG | 0.359169 | 7.3:-22140514 | MS.gene055922:CDS |
AGTCAAGAAAACAAATTCTA+AGG | 0.361498 | 7.3:-22144346 | MS.gene055922:CDS |
CAGAGACAACCCCATTTCTA+TGG | 0.363090 | 7.3:+22146980 | None:intergenic |
TGATCTAGCTTCTGATAATC+AGG | 0.364733 | 7.3:-22139928 | MS.gene055922:CDS |
CTCTCTCCTGTTCAGCTCGC+TGG | 0.366469 | 7.3:+22144367 | None:intergenic |
AGATCAAATCGTACTTTCTT+GGG | 0.368877 | 7.3:+22139945 | None:intergenic |
CCTAATTTGGTAACTTATAG+AGG | 0.376429 | 7.3:-22158358 | MS.gene055922:CDS |
GATACGGTCTCGGGAGGATT+CGG | 0.378322 | 7.3:-22144414 | MS.gene055922:CDS |
CTCTAGGACTTAAAGATTAT+AGG | 0.380227 | 7.3:-22154647 | MS.gene055922:CDS |
TCAGGGTTTGTACTTCTTGT+GGG | 0.382781 | 7.3:-22151083 | MS.gene055922:intron |
ACATAGTCCAAGTGCAAAAT+GGG | 0.386704 | 7.3:+22144551 | None:intergenic |
TTAGTCAAGTTGGGAATGTT+TGG | 0.387132 | 7.3:-22158393 | MS.gene055922:CDS |
TAGTGCTTCTGATTATCCTT+TGG | 0.388441 | 7.3:-22158257 | MS.gene055922:CDS |
TTGGTATAATAATGAAAATA+TGG | 0.391550 | 7.3:-22139859 | MS.gene055922:CDS |
GCCTCTGCAGCAGATTGAGC+AGG | 0.395396 | 7.3:+22140763 | None:intergenic |
ATTTGCTTGGCCATAGAAAT+GGG | 0.398488 | 7.3:-22146990 | MS.gene055922:CDS |
ATGATCTTCACTACATTACT+TGG | 0.398716 | 7.3:-22154698 | MS.gene055922:CDS |
ACATCTTTATGTTCTACATC+TGG | 0.399192 | 7.3:+22158445 | None:intergenic |
GTTGGGAATGTTTGGATTGT+TGG | 0.407675 | 7.3:-22158385 | MS.gene055922:CDS |
TTCAGGGTTTGTACTTCTTG+TGG | 0.413142 | 7.3:-22151084 | MS.gene055922:intron |
GATCCATTGAATTTACTGTT+TGG | 0.414083 | 7.3:+22144618 | None:intergenic |
TTACTGTTTGGCATTACAAC+CGG | 0.417781 | 7.3:+22144630 | None:intergenic |
TCCCATATTATCTTCCTGTA+AGG | 0.418087 | 7.3:+22142737 | None:intergenic |
GAGCTTCACAGTATCACCTT+TGG | 0.422084 | 7.3:+22158534 | None:intergenic |
TGCTTCTTAAGACATGTCAT+TGG | 0.425258 | 7.3:-22158297 | MS.gene055922:CDS |
TTAAGACATGTCATTGGGAT+TGG | 0.429628 | 7.3:-22158291 | MS.gene055922:CDS |
GAGATGTGGTCCGCCAAGCT+AGG | 0.437701 | 7.3:-22149430 | MS.gene055922:CDS |
AGATAAAGAGAAGGATCAAT+AGG | 0.439509 | 7.3:+22147463 | None:intergenic |
GATTTACATGTAGATTTGCT+TGG | 0.439640 | 7.3:-22147003 | MS.gene055922:intron |
AGTAATTGGGTATGTTATGT+TGG | 0.441095 | 7.3:+22158579 | None:intergenic |
AATTATAACCATCTTCTTCA+GGG | 0.445106 | 7.3:+22139823 | None:intergenic |
GCTTCTTAAGACATGTCATT+GGG | 0.449821 | 7.3:-22158296 | MS.gene055922:CDS |
GCTTCTCTTCCTCATTGAAA+AGG | 0.451934 | 7.3:+22142759 | None:intergenic |
TTGAGGATGGTGACAATGAT+TGG | 0.452380 | 7.3:-22139878 | MS.gene055922:CDS |
GTGATACTGTGAAGCTCAAA+AGG | 0.453050 | 7.3:-22158528 | MS.gene055922:CDS |
AAATAATTGCATCAGCCATC+AGG | 0.453374 | 7.3:+22155416 | None:intergenic |
TGCAGAGGCTGCTTGCCAAA+TGG | 0.454248 | 7.3:-22140749 | MS.gene055922:CDS |
TATCCTTTGGTTACACAAGA+TGG | 0.455593 | 7.3:-22158244 | MS.gene055922:CDS |
GACGTAAATCAGAGCAAGTA+CGG | 0.455951 | 7.3:-22149263 | MS.gene055922:CDS |
TTGGGAATGTTTGGATTGTT+GGG | 0.458432 | 7.3:-22158384 | MS.gene055922:CDS |
AGTGTGTGAGCACAAAGAAA+TGG | 0.459697 | 7.3:-22144580 | MS.gene055922:CDS |
TCAAGTAAGCAAAAGTAATT+GGG | 0.460700 | 7.3:+22158566 | None:intergenic |
ACGGAAGCTCAAGATGAATC+AGG | 0.460758 | 7.3:-22143853 | MS.gene055922:intron |
GCCTGCTCAATCTGCTGCAG+AGG | 0.461546 | 7.3:-22140764 | MS.gene055922:CDS |
TGTTCAGCTCGCTGGAATGC+AGG | 0.470422 | 7.3:+22144375 | None:intergenic |
ATATTAACATACTTCATAGA+AGG | 0.472972 | 7.3:+22149406 | None:intergenic |
CGTAAAAGGACTTTATATAG+AGG | 0.475221 | 7.3:-22149918 | MS.gene055922:intron |
TTGCTCTGATTTACGTCCTC+GGG | 0.475642 | 7.3:+22149269 | None:intergenic |
GTGAGTTGCATATTACTGTT+TGG | 0.477123 | 7.3:+22154748 | None:intergenic |
TTGTTGTGCAGTTATGAGCT+TGG | 0.479081 | 7.3:-22147547 | MS.gene055922:intron |
GTAACTTACAATATCTCGCT+TGG | 0.480813 | 7.3:+22146703 | None:intergenic |
ATGCCAAACAGTAAATTCAA+TGG | 0.481500 | 7.3:-22144621 | MS.gene055922:CDS |
TCATATTTCCCTGAAGAAGA+TGG | 0.486824 | 7.3:-22139831 | MS.gene055922:CDS |
TTACAGTTTGATACGGTCTC+GGG | 0.487605 | 7.3:-22144423 | MS.gene055922:intron |
GTCTCGGGAGGATTCGGTGG+TGG | 0.489363 | 7.3:-22144408 | MS.gene055922:CDS |
TACAGCTCTCTTGATTCCAC+TGG | 0.493925 | 7.3:+22142475 | None:intergenic |
AGAGTAGTTGCAAGCATAGT+TGG | 0.496093 | 7.3:+22158334 | None:intergenic |
AAACAACATCCTAGGTCTCT+AGG | 0.497584 | 7.3:-22154663 | MS.gene055922:CDS |
GGTTTGTACTTCTTGTGGGA+AGG | 0.505262 | 7.3:-22151079 | MS.gene055922:CDS |
CTTGCTCTGATTTACGTCCT+CGG | 0.506138 | 7.3:+22149268 | None:intergenic |
GATGGTTATAATTATGATGA+GGG | 0.508705 | 7.3:-22139813 | MS.gene055922:CDS |
TTTGGTTACACAAGATGGTA+TGG | 0.518759 | 7.3:-22158239 | MS.gene055922:intron |
TTCTGTTGCAAAATCAAGAA+AGG | 0.518983 | 7.3:-22142437 | MS.gene055922:intron |
TACTTCTTGTGGGAAGGTGT+TGG | 0.519452 | 7.3:-22151073 | MS.gene055922:CDS |
TTGCGCAAATGAACCGTGAC+TGG | 0.519674 | 7.3:-22146939 | MS.gene055922:intron |
CTTTGTGCTCACACACTAGA+GGG | 0.519934 | 7.3:+22144586 | None:intergenic |
TTTACAGTTTGATACGGTCT+CGG | 0.525765 | 7.3:-22144424 | MS.gene055922:intron |
CATAGAAGGCCCTAGCTTGG+CGG | 0.525773 | 7.3:+22149420 | None:intergenic |
GATACATTTACAGTTTGATA+CGG | 0.529012 | 7.3:-22144430 | MS.gene055922:intron |
AGATGTGGTCCGCCAAGCTA+GGG | 0.529307 | 7.3:-22149429 | MS.gene055922:CDS |
CTTTCAGGAGCAAGCAGCCA+AGG | 0.531731 | 7.3:-22142551 | MS.gene055922:intron |
TGCAACTACTCTTCATGCTA+TGG | 0.532994 | 7.3:-22158323 | MS.gene055922:CDS |
CTTGGAGACTTTATGACCAT+GGG | 0.533271 | 7.3:+22146721 | None:intergenic |
GAATATTTAAGTCTCAGCCT+TGG | 0.535149 | 7.3:-22149464 | MS.gene055922:CDS |
GCCTTACAGGAAGATAATAT+GGG | 0.537814 | 7.3:-22142738 | MS.gene055922:CDS |
TAGTGGATGCACATGCCTGA+TGG | 0.538003 | 7.3:-22155431 | MS.gene055922:CDS |
ATCCTCCAAAACAACATCCT+AGG | 0.540904 | 7.3:-22154671 | MS.gene055922:CDS |
TTGCCAAATGGTGAAAAGAA+AGG | 0.548531 | 7.3:-22140737 | MS.gene055922:intron |
TTGTGCAGTTATGAGCTTGG+AGG | 0.548966 | 7.3:-22147544 | MS.gene055922:intron |
CTTCATAGAAGGCCCTAGCT+TGG | 0.550801 | 7.3:+22149417 | None:intergenic |
GTTTAATAGAGCAAAATATC+GGG | 0.553849 | 7.3:-22149978 | MS.gene055922:intron |
TCTTTAAGTCCTAGAGACCT+AGG | 0.565974 | 7.3:+22154654 | None:intergenic |
ACGTAAATCAGAGCAAGTAC+GGG | 0.566647 | 7.3:-22149262 | MS.gene055922:CDS |
AATGTAGTGAAGATCATGGT+TGG | 0.568469 | 7.3:+22154704 | None:intergenic |
TAACTACTATTTGATTCACA+TGG | 0.570348 | 7.3:-22158479 | MS.gene055922:CDS |
CTCAGCCTTGGAGTAAGTGA+GGG | 0.572595 | 7.3:-22149452 | MS.gene055922:CDS |
TCTCAGCCTTGGAGTAAGTG+AGG | 0.575387 | 7.3:-22149453 | MS.gene055922:CDS |
ACGGTCTCGGGAGGATTCGG+TGG | 0.575682 | 7.3:-22144411 | MS.gene055922:CDS |
TGATCTTCACTACATTACTT+GGG | 0.576959 | 7.3:-22154697 | MS.gene055922:CDS |
GAAAACAGACGGAGGAAACC+AGG | 0.577393 | 7.3:-22146782 | MS.gene055922:intron |
TACTTGATCTCTGCATCCAA+AGG | 0.577475 | 7.3:-22158550 | MS.gene055922:CDS |
AGATGGTTATAATTATGATG+AGG | 0.579920 | 7.3:-22139814 | MS.gene055922:CDS |
TCTTTGTGCTCACACACTAG+AGG | 0.582080 | 7.3:+22144585 | None:intergenic |
TGTGCAGTGTCTATTTCTAG+TGG | 0.582465 | 7.3:-22155448 | MS.gene055922:CDS |
GCTTGGAGACTTTATGACCA+TGG | 0.586307 | 7.3:+22146720 | None:intergenic |
CAGTCACCTGCAACCAGTCA+CGG | 0.587214 | 7.3:+22146926 | None:intergenic |
AAATTTGATAAAAGCAGTTG+AGG | 0.589359 | 7.3:-22149955 | MS.gene055922:CDS |
TCAGCTCGCTGGAATGCAGG+AGG | 0.591458 | 7.3:+22144378 | None:intergenic |
CTCTGATATTGATGACCAAG+AGG | 0.592332 | 7.3:-22143824 | MS.gene055922:intron |
AAGTAATGTAGTGAAGATCA+TGG | 0.594031 | 7.3:+22154700 | None:intergenic |
CAGTTTGATACGGTCTCGGG+AGG | 0.598485 | 7.3:-22144420 | MS.gene055922:CDS |
GGAGGATGAACTGGGATCAG+CGG | 0.598671 | 7.3:-22139907 | MS.gene055922:CDS |
TACACCTCTGCTAATGCCCA+TGG | 0.600678 | 7.3:-22146737 | MS.gene055922:CDS |
TGGAGTAAGTGAGGGAGATG+TGG | 0.601914 | 7.3:-22149444 | MS.gene055922:CDS |
ACGTGCCTTCCTACTTGTAG+AGG | 0.602792 | 7.3:-22155362 | MS.gene055922:CDS |
GTGAAGATCATGGTTGGCAG+TGG | 0.602943 | 7.3:+22154710 | None:intergenic |
ATGACCATGGGCATTAGCAG+AGG | 0.607763 | 7.3:+22146733 | None:intergenic |
TTTGTGCTCACACACTAGAG+GGG | 0.608810 | 7.3:+22144587 | None:intergenic |
TATTTATGAAGATAAAGAGA+AGG | 0.612010 | 7.3:+22147454 | None:intergenic |
GATAATCAGGAGGATGAACT+GGG | 0.614887 | 7.3:-22139915 | MS.gene055922:CDS |
TCAGAACCGCGAGTATCTTG+AGG | 0.625907 | 7.3:-22142711 | MS.gene055922:intron |
CATCTCCCTCACTTACTCCA+AGG | 0.626580 | 7.3:+22149447 | None:intergenic |
ACTATGTGAAACTTGCTACA+AGG | 0.630733 | 7.3:-22144535 | MS.gene055922:CDS |
CAGCTCGCTGGAATGCAGGA+GGG | 0.634000 | 7.3:+22144379 | None:intergenic |
ATGTTCCTCTACAAGTAGGA+AGG | 0.639283 | 7.3:+22155357 | None:intergenic |
TACCATGTTCCTCTACAAGT+AGG | 0.641064 | 7.3:+22155353 | None:intergenic |
TTTGCTTGGCCATAGAAATG+GGG | 0.652044 | 7.3:-22146989 | MS.gene055922:CDS |
AGATGTAGAACATAAAGATG+TGG | 0.652796 | 7.3:-22158443 | MS.gene055922:CDS |
GCAGCAGCAAATAATCCACC+TGG | 0.653284 | 7.3:+22146764 | None:intergenic |
AACTTCAATTACCTGTCCGG+CGG | 0.654079 | 7.3:+22151008 | None:intergenic |
ATACCATCTTGTGTAACCAA+AGG | 0.660551 | 7.3:+22158241 | None:intergenic |
TTCCTACTTGTAGAGGAACA+TGG | 0.664061 | 7.3:-22155355 | MS.gene055922:intron |
CATAGTCCAAGTGCAAAATG+GGG | 0.677751 | 7.3:+22144552 | None:intergenic |
TCTAGCTTCTGATAATCAGG+AGG | 0.679995 | 7.3:-22139925 | MS.gene055922:CDS |
TCTGTACCTCAAGATACTCG+CGG | 0.681039 | 7.3:+22142705 | None:intergenic |
GGTTGAGGAGTTGAATGCAA+TGG | 0.681250 | 7.3:-22144673 | MS.gene055922:CDS |
AAATTTGGAAAATTGTCCAG+TGG | 0.694574 | 7.3:-22142491 | MS.gene055922:CDS |
AACAGACGGAGGAAACCAGG+TGG | 0.733531 | 7.3:-22146779 | MS.gene055922:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 22139803 | 22158626 | 22139803 | ID=MS.gene055922 |
chr7.3 | mRNA | 22139803 | 22158626 | 22139803 | ID=MS.gene055922.t1;Parent=MS.gene055922 |
chr7.3 | exon | 22158240 | 22158626 | 22158240 | ID=MS.gene055922.t1.exon1;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22158240 | 22158626 | 22158240 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22155356 | 22155470 | 22155356 | ID=MS.gene055922.t1.exon2;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22155356 | 22155470 | 22155356 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22154558 | 22154780 | 22154558 | ID=MS.gene055922.t1.exon3;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22154558 | 22154780 | 22154558 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22151020 | 22151101 | 22151020 | ID=MS.gene055922.t1.exon4;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22151020 | 22151101 | 22151020 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22149919 | 22149991 | 22149919 | ID=MS.gene055922.t1.exon5;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22149919 | 22149991 | 22149919 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22149418 | 22149500 | 22149418 | ID=MS.gene055922.t1.exon6;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22149418 | 22149500 | 22149418 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22149237 | 22149313 | 22149237 | ID=MS.gene055922.t1.exon7;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22149237 | 22149313 | 22149237 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22147653 | 22147709 | 22147653 | ID=MS.gene055922.t1.exon8;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22147653 | 22147709 | 22147653 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22147446 | 22147558 | 22147446 | ID=MS.gene055922.t1.exon9;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22147446 | 22147558 | 22147446 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22146940 | 22147012 | 22146940 | ID=MS.gene055922.t1.exon10;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22146940 | 22147012 | 22146940 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22146712 | 22146790 | 22146712 | ID=MS.gene055922.t1.exon11;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22146712 | 22146790 | 22146712 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22144767 | 22144847 | 22144767 | ID=MS.gene055922.t1.exon12;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22144767 | 22144847 | 22144767 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22144533 | 22144694 | 22144533 | ID=MS.gene055922.t1.exon13;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22144533 | 22144694 | 22144533 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22144335 | 22144439 | 22144335 | ID=MS.gene055922.t1.exon14;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22144335 | 22144439 | 22144335 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22143899 | 22143923 | 22143899 | ID=MS.gene055922.t1.exon15;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22143899 | 22143923 | 22143899 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22143825 | 22143868 | 22143825 | ID=MS.gene055922.t1.exon16;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22143825 | 22143868 | 22143825 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22142712 | 22142792 | 22142712 | ID=MS.gene055922.t1.exon17;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22142712 | 22142792 | 22142712 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22142438 | 22142566 | 22142438 | ID=MS.gene055922.t1.exon18;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22142438 | 22142566 | 22142438 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22140738 | 22140824 | 22140738 | ID=MS.gene055922.t1.exon19;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22140738 | 22140824 | 22140738 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22140482 | 22140538 | 22140482 | ID=MS.gene055922.t1.exon20;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22140482 | 22140538 | 22140482 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
chr7.3 | exon | 22139803 | 22139982 | 22139803 | ID=MS.gene055922.t1.exon21;Parent=MS.gene055922.t1 |
chr7.3 | CDS | 22139803 | 22139982 | 22139803 | ID=cds.MS.gene055922.t1;Parent=MS.gene055922.t1 |
Gene Sequence |
Protein sequence |