Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014785.t1 | XP_003603467.1 | 97.6 | 499 | 12 | 0 | 1 | 499 | 1 | 499 | 2.50E-282 | 980.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014785.t1 | Q93YV6 | 72.9 | 498 | 130 | 3 | 1 | 498 | 1 | 493 | 2.2e-210 | 733.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014785.t1 | G7JBQ2 | 97.6 | 499 | 12 | 0 | 1 | 499 | 1 | 499 | 1.8e-282 | 980.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014785 | MS.gene007562 | PPI |
| MS.gene029756 | MS.gene014785 | PPI |
| MS.gene014785 | MS.gene067043 | PPI |
| MS.gene014785 | MS.gene22385 | PPI |
| MS.gene014785 | MS.gene70740 | PPI |
| MS.gene014785 | MS.gene020631 | PPI |
| MS.gene014785 | MS.gene045221 | PPI |
| MS.gene25819 | MS.gene014785 | PPI |
| MS.gene014785 | MS.gene051425 | PPI |
| MS.gene014785 | MS.gene007383 | PPI |
| MS.gene014785 | MS.gene75564 | PPI |
| MS.gene044183 | MS.gene014785 | PPI |
| MS.gene79120 | MS.gene014785 | PPI |
| MS.gene014785 | MS.gene035014 | PPI |
| MS.gene014785 | MS.gene47441 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014785.t1 | MTR_3g107980 | 97.595 | 499 | 12 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1008 |
| MS.gene014785.t1 | MTR_1g011460 | 80.639 | 501 | 86 | 5 | 1 | 499 | 1 | 492 | 0.0 | 828 |
| MS.gene014785.t1 | MTR_4g113020 | 58.635 | 498 | 196 | 5 | 1 | 493 | 1 | 493 | 0.0 | 612 |
| MS.gene014785.t1 | MTR_6g022720 | 54.475 | 514 | 211 | 5 | 1 | 498 | 1 | 507 | 0.0 | 553 |
| MS.gene014785.t1 | MTR_3g086010 | 51.316 | 532 | 204 | 4 | 1 | 497 | 1 | 512 | 0.0 | 540 |
| MS.gene014785.t1 | MTR_3g080070 | 57.792 | 462 | 183 | 3 | 44 | 497 | 66 | 523 | 0.0 | 526 |
| MS.gene014785.t1 | MTR_1g062950 | 57.395 | 453 | 187 | 3 | 36 | 484 | 26 | 476 | 0.0 | 520 |
| MS.gene014785.t1 | MTR_4g113020 | 60.814 | 393 | 144 | 5 | 1 | 388 | 1 | 388 | 4.17e-174 | 495 |
| MS.gene014785.t1 | MTR_1g111570 | 54.102 | 451 | 195 | 4 | 54 | 497 | 43 | 488 | 8.20e-168 | 483 |
| MS.gene014785.t1 | MTR_6g022720 | 55.392 | 408 | 160 | 4 | 1 | 392 | 1 | 402 | 9.07e-154 | 444 |
| MS.gene014785.t1 | MTR_7g102900 | 56.787 | 361 | 154 | 2 | 35 | 395 | 12 | 370 | 2.63e-142 | 414 |
| MS.gene014785.t1 | MTR_1g112940 | 40.144 | 416 | 245 | 3 | 69 | 484 | 23 | 434 | 4.20e-116 | 350 |
| MS.gene014785.t1 | MTR_7g102920 | 59.813 | 107 | 43 | 0 | 387 | 493 | 22 | 128 | 2.54e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014785.t1 | AT5G25510 | 72.892 | 498 | 130 | 3 | 1 | 498 | 1 | 493 | 0.0 | 750 |
| MS.gene014785.t1 | AT1G13460 | 58.734 | 458 | 181 | 2 | 36 | 486 | 31 | 487 | 0.0 | 555 |
| MS.gene014785.t1 | AT1G13460 | 58.734 | 458 | 181 | 2 | 36 | 486 | 31 | 487 | 0.0 | 555 |
| MS.gene014785.t1 | AT3G26020 | 55.166 | 513 | 202 | 4 | 1 | 488 | 1 | 510 | 0.0 | 552 |
| MS.gene014785.t1 | AT3G26020 | 55.166 | 513 | 202 | 4 | 1 | 488 | 1 | 510 | 0.0 | 552 |
| MS.gene014785.t1 | AT3G26020 | 55.166 | 513 | 202 | 4 | 1 | 488 | 1 | 510 | 0.0 | 552 |
| MS.gene014785.t1 | AT3G26020 | 55.166 | 513 | 202 | 4 | 1 | 488 | 1 | 510 | 0.0 | 552 |
| MS.gene014785.t1 | AT3G21650 | 53.875 | 529 | 209 | 5 | 1 | 496 | 1 | 527 | 0.0 | 551 |
| MS.gene014785.t1 | AT3G21650 | 53.875 | 529 | 209 | 5 | 1 | 496 | 1 | 527 | 0.0 | 551 |
| MS.gene014785.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene014785.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene014785.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene014785.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene014785.t1 | AT3G09880 | 54.564 | 493 | 220 | 3 | 1 | 491 | 1 | 491 | 0.0 | 528 |
| MS.gene014785.t1 | AT5G03470 | 52.138 | 491 | 217 | 4 | 1 | 482 | 1 | 482 | 0.0 | 519 |
| MS.gene014785.t1 | AT3G26030 | 51.639 | 488 | 217 | 6 | 1 | 484 | 1 | 473 | 1.94e-174 | 499 |
| MS.gene014785.t1 | AT3G26020 | 46.881 | 561 | 193 | 6 | 1 | 488 | 1 | 529 | 2.33e-162 | 471 |
| MS.gene014785.t1 | AT3G54930 | 50.780 | 449 | 212 | 4 | 41 | 485 | 51 | 494 | 6.96e-157 | 456 |
| MS.gene014785.t1 | AT3G54930 | 50.780 | 449 | 212 | 4 | 41 | 485 | 51 | 494 | 6.96e-157 | 456 |
| MS.gene014785.t1 | AT3G26020 | 47.243 | 544 | 199 | 8 | 1 | 488 | 1 | 512 | 1.40e-155 | 452 |
| MS.gene014785.t1 | AT3G26020 | 47.243 | 544 | 199 | 8 | 1 | 488 | 1 | 512 | 1.40e-155 | 452 |
| MS.gene014785.t1 | AT3G26020 | 47.243 | 544 | 199 | 8 | 1 | 488 | 1 | 512 | 1.40e-155 | 452 |
| MS.gene014785.t1 | AT4G15415 | 53.995 | 413 | 150 | 5 | 1 | 388 | 1 | 398 | 3.92e-152 | 441 |
| MS.gene014785.t1 | AT3G54930 | 48.864 | 352 | 171 | 4 | 41 | 388 | 51 | 397 | 9.93e-116 | 347 |
Find 101 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAGCAGTTTACACTTTC+AGG | 0.121863 | 3.1:-85743615 | MS.gene014785:intron |
| GTTGATTTCGTTTCTTCTTT+TGG | 0.126517 | 3.1:-85744397 | MS.gene014785:CDS |
| TGGTGAACTTGAAGAAATTT+TGG | 0.149673 | 3.1:-85743702 | MS.gene014785:CDS |
| ACAATTATGCATAGGGTTTA+TGG | 0.161244 | 3.1:-85744067 | MS.gene014785:CDS |
| CGATTATGAGCCCTATAATT+TGG | 0.163883 | 3.1:+85744298 | None:intergenic |
| TCTTTCTGACTATGTGTTAT+TGG | 0.185063 | 3.1:+85743737 | None:intergenic |
| TGAACCGTTGGTGCCGTTTA+AGG | 0.236729 | 3.1:-85744551 | MS.gene014785:CDS |
| CCATGCTTCATTCCGTTTCT+CGG | 0.255715 | 3.1:+85742562 | None:intergenic |
| CTGAAAGAGCCCTTTACTTA+TGG | 0.260970 | 3.1:-85742802 | MS.gene014785:CDS |
| GACTCAACTTGCTTACAAAA+AGG | 0.294484 | 3.1:+85744503 | None:intergenic |
| TTTGCATAAGCCTAGATCTA+TGG | 0.307302 | 3.1:-85743858 | MS.gene014785:CDS |
| TAAGGGGTTTGTTGAAATAT+TGG | 0.309574 | 3.1:-85743760 | MS.gene014785:CDS |
| GGGTCATGGTACCATTGTTT+TGG | 0.346012 | 3.1:-85743652 | MS.gene014785:CDS |
| TCAACGACACGGTGCTTGTC+GGG | 0.353803 | 3.1:+85744575 | None:intergenic |
| TTCGTTTATTTCGACATTGT+TGG | 0.361294 | 3.1:-85744134 | MS.gene014785:CDS |
| TTAATCGATTTCCGAATATA+AGG | 0.364782 | 3.1:+85744025 | None:intergenic |
| TGGTTCATAGACCTTATATT+CGG | 0.373056 | 3.1:-85744036 | MS.gene014785:CDS |
| TCGAAAGATGTTCAAGGAAA+TGG | 0.374042 | 3.1:-85742651 | MS.gene014785:CDS |
| GTTGGCAAGCATTGTGATAA+GGG | 0.379464 | 3.1:-85743777 | MS.gene014785:CDS |
| GCGTTTGATTTCACCGATCC+TGG | 0.382769 | 3.1:-85744469 | MS.gene014785:CDS |
| TGAGTTAAGTTGAGCACTGC+TGG | 0.396441 | 3.1:+85742680 | None:intergenic |
| TGTTTAATTCAGAGGATCCT+AGG | 0.408299 | 3.1:-85744108 | MS.gene014785:CDS |
| TAGGGTTTATGGAAAATTCA+TGG | 0.408503 | 3.1:-85744056 | MS.gene014785:CDS |
| AAAAGTTCCGGTTATCAAAT+CGG | 0.415885 | 3.1:+85742476 | None:intergenic |
| ATCTTCTTGTCTTGATGCTA+AGG | 0.421519 | 3.1:-85744179 | MS.gene014785:CDS |
| ATCAACGACACGGTGCTTGT+CGG | 0.430172 | 3.1:+85744574 | None:intergenic |
| TAACACAATAAGACAATTGT+TGG | 0.432178 | 3.1:+85743825 | None:intergenic |
| TCCGACTGCAGGCTTGAGAC+TGG | 0.432874 | 3.1:+85742520 | None:intergenic |
| TACTTGTCGTTCTCAGTGTA+AGG | 0.435400 | 3.1:-85742612 | MS.gene014785:CDS |
| TATAGGGCTCATAATCGAAT+TGG | 0.435556 | 3.1:-85744292 | MS.gene014785:CDS |
| TCTAGGGCTGGAAATATGAT+AGG | 0.438519 | 3.1:+85742728 | None:intergenic |
| TTAACATGGTTGAATTTCAA+AGG | 0.444198 | 3.1:-85743673 | MS.gene014785:CDS |
| TTTGAGACTGAGAAACATAA+TGG | 0.446941 | 3.1:-85743980 | MS.gene014785:CDS |
| TAATGGGATTGCTGAGTTGT+TGG | 0.454254 | 3.1:-85743963 | MS.gene014785:CDS |
| GTTCACAAGGTGGCAACGAT+GGG | 0.457049 | 3.1:-85744642 | MS.gene014785:CDS |
| GTCATTGTTCCATAAGTAAA+GGG | 0.458533 | 3.1:+85742793 | None:intergenic |
| TTTGAAGACAATTATGCATA+GGG | 0.458555 | 3.1:-85744074 | MS.gene014785:CDS |
| GAGCTAGGAACATCCTTAAA+CGG | 0.461998 | 3.1:+85744538 | None:intergenic |
| GGCTGTGAAAATTCTTCTCT+AGG | 0.462683 | 3.1:+85742711 | None:intergenic |
| TGAAAATTCTTCTCTAGGGC+TGG | 0.465398 | 3.1:+85742716 | None:intergenic |
| AGTTGGCAAGCATTGTGATA+AGG | 0.466297 | 3.1:-85743778 | MS.gene014785:CDS |
| TTGCATAAGCCTAGATCTAT+GGG | 0.468637 | 3.1:-85743857 | MS.gene014785:CDS |
| CTACACATTGCAAGAATAGC+TGG | 0.471777 | 3.1:+85744355 | None:intergenic |
| TTCAGAGGATCCTAGGGAAA+GGG | 0.481136 | 3.1:-85744101 | MS.gene014785:CDS |
| ATCACAATGCTTGCCAACTT+AGG | 0.481943 | 3.1:+85743782 | None:intergenic |
| TAACATGGTTGAATTTCAAA+GGG | 0.486120 | 3.1:-85743672 | MS.gene014785:CDS |
| TAGATCTAGGCTTATGCAAA+GGG | 0.487403 | 3.1:+85743861 | None:intergenic |
| ACAGCGGTGTTTCCGACTGC+AGG | 0.494459 | 3.1:+85742509 | None:intergenic |
| TTCTCCACAACGTTCTTACC+AGG | 0.494722 | 3.1:+85744451 | None:intergenic |
| TTGAGACTGAGAAACATAAT+GGG | 0.499989 | 3.1:-85743979 | MS.gene014785:CDS |
| GGTCATTGTTCCATAAGTAA+AGG | 0.501018 | 3.1:+85742792 | None:intergenic |
| TATAGAGAAGGAGCCTAAGT+TGG | 0.501710 | 3.1:-85743795 | MS.gene014785:CDS |
| TAATGTTCGAAAGATGTTCA+AGG | 0.504213 | 3.1:-85742657 | MS.gene014785:CDS |
| CAGAAAGAGGTAATGTTCCT+TGG | 0.505468 | 3.1:-85743722 | MS.gene014785:CDS |
| GTTGGAGTTGTTTAATTCAG+AGG | 0.506382 | 3.1:-85744116 | MS.gene014785:CDS |
| CACGATTCGTCTCGAGTCGC+CGG | 0.507626 | 3.1:-85744676 | MS.gene014785:CDS |
| TATGAGCCCTATAATTTGGC+GGG | 0.511960 | 3.1:+85744302 | None:intergenic |
| AGTTGAAGATGAGGCCAAGC+AGG | 0.513838 | 3.1:+85744232 | None:intergenic |
| CGTTCACAAGGTGGCAACGA+TGG | 0.515708 | 3.1:-85744643 | MS.gene014785:CDS |
| TACACTGAGAACGACAAGTA+AGG | 0.518679 | 3.1:+85742615 | None:intergenic |
| GTAAAGCCAACGCCGCGAAA+AGG | 0.528269 | 3.1:-85744618 | MS.gene014785:CDS |
| GTTTAAGGATGTTCCTAGCT+CGG | 0.529201 | 3.1:-85744536 | MS.gene014785:CDS |
| GTTTGAAGACAATTATGCAT+AGG | 0.530923 | 3.1:-85744075 | MS.gene014785:CDS |
| CGTGTCGTTGATTGAACCGT+TGG | 0.536205 | 3.1:-85744563 | MS.gene014785:CDS |
| AATAACACATAGTCAGAAAG+AGG | 0.543766 | 3.1:-85743735 | MS.gene014785:CDS |
| GTTTAATTCAGAGGATCCTA+GGG | 0.547186 | 3.1:-85744107 | MS.gene014785:CDS |
| CATCGTTGCCACCTTGTGAA+CGG | 0.548599 | 3.1:+85744644 | None:intergenic |
| TGTTACACAGTTTATAGAGA+AGG | 0.551841 | 3.1:-85743807 | MS.gene014785:CDS |
| AGGGCTCATAATCGAATTGG+TGG | 0.561637 | 3.1:-85744289 | MS.gene014785:CDS |
| TTCAAACAATCCCTTTCCCT+AGG | 0.563376 | 3.1:+85744091 | None:intergenic |
| CCGAGAAACGGAATGAAGCA+TGG | 0.564439 | 3.1:-85742562 | MS.gene014785:CDS |
| TAAACTCAGAATCCGAGAAA+CGG | 0.564512 | 3.1:-85742574 | MS.gene014785:CDS |
| ATTCAGAGGATCCTAGGGAA+AGG | 0.566825 | 3.1:-85744102 | MS.gene014785:CDS |
| GGTTGAATTTCAAAGGGTCA+TGG | 0.572983 | 3.1:-85743666 | MS.gene014785:CDS |
| TTATGAGCCCTATAATTTGG+CGG | 0.573142 | 3.1:+85744301 | None:intergenic |
| GGCCAAGCAGGATCAAAAGC+TGG | 0.573611 | 3.1:+85744244 | None:intergenic |
| CAAAACATCAAAACATGACT+CGG | 0.575102 | 3.1:-85744722 | MS.gene014785:CDS |
| CACAACGTTCTTACCAGGAT+CGG | 0.577144 | 3.1:+85744456 | None:intergenic |
| GCTGTGAAAATTCTTCTCTA+GGG | 0.582234 | 3.1:+85742712 | None:intergenic |
| ATAGATCTAGGCTTATGCAA+AGG | 0.583981 | 3.1:+85743860 | None:intergenic |
| TGATAGGTAGTATCACTTGA+CGG | 0.585783 | 3.1:+85742744 | None:intergenic |
| GCCAGTCTCAAGCCTGCAGT+CGG | 0.589044 | 3.1:-85742521 | MS.gene014785:CDS |
| TCGTAAACAAGTTGAAGATG+AGG | 0.589521 | 3.1:+85744223 | None:intergenic |
| GCTTAGAAATTGCTTCAACA+TGG | 0.590281 | 3.1:+85744756 | None:intergenic |
| TTGGCAAGCATTGTGATAAG+GGG | 0.600788 | 3.1:-85743776 | MS.gene014785:CDS |
| GCATAAGCCTAGATCTATGG+GGG | 0.614955 | 3.1:-85743855 | MS.gene014785:CDS |
| TGAGCACTGCTGGATTCCAA+TGG | 0.617342 | 3.1:+85742690 | None:intergenic |
| CGATCCTGGTAAGAACGTTG+TGG | 0.627401 | 3.1:-85744455 | MS.gene014785:CDS |
| TTGTCGTTCTCAGTGTAAGG+AGG | 0.628066 | 3.1:-85742609 | MS.gene014785:CDS |
| TTCACAAGGTGGCAACGATG+GGG | 0.629684 | 3.1:-85744641 | MS.gene014785:CDS |
| TATCCAATTCGCCAAAACAA+TGG | 0.631825 | 3.1:+85743641 | None:intergenic |
| GCTCATAATCGAATTGGTGG+CGG | 0.634215 | 3.1:-85744286 | MS.gene014785:CDS |
| ACATCCTTAAACGGCACCAA+CGG | 0.634758 | 3.1:+85744547 | None:intergenic |
| TGCATAAGCCTAGATCTATG+GGG | 0.657749 | 3.1:-85743856 | MS.gene014785:CDS |
| TCACAAGGTGGCAACGATGG+GGG | 0.663490 | 3.1:-85744640 | MS.gene014785:CDS |
| CAACGGTTCAATCAACGACA+CGG | 0.678323 | 3.1:+85744564 | None:intergenic |
| AAATTTCTTCAAGTTCACCA+AGG | 0.678727 | 3.1:+85743705 | None:intergenic |
| AATCGGAGAGACTAAAACAG+CGG | 0.688386 | 3.1:+85742493 | None:intergenic |
| GAGCAATCAAATTGACAATG+TGG | 0.692072 | 3.1:+85742771 | None:intergenic |
| GAAAAGGAATTCATCCGCTG+CGG | 0.693036 | 3.1:-85744602 | MS.gene014785:CDS |
| GCTTGTCGGGAAAACCGCAG+CGG | 0.752837 | 3.1:+85744588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATCCTCATTATTT+GGG | - | chr3.1:85743676-85743695 | MS.gene014785:CDS | 15.0% |
| !! | AAAAATAACATTGGAATAAT+AGG | + | chr3.1:85743706-85743725 | None:intergenic | 15.0% |
| !! | ATATACTTGTAGAAAATATA+GGG | + | chr3.1:85744257-85744276 | None:intergenic | 15.0% |
| !! | TAAAAAAAATCCTCATTATT+TGG | - | chr3.1:85743675-85743694 | MS.gene014785:CDS | 15.0% |
| !! | TATATACTTGTAGAAAATAT+AGG | + | chr3.1:85744258-85744277 | None:intergenic | 15.0% |
| !! | TATTGGAATAAAAATAACAT+TGG | + | chr3.1:85743715-85743734 | None:intergenic | 15.0% |
| !!! | TTTTGGAATATTGATAATAT+GGG | + | chr3.1:85743954-85743973 | None:intergenic | 15.0% |
| !!! | TTTTTGGAATATTGATAATA+TGG | + | chr3.1:85743955-85743974 | None:intergenic | 15.0% |
| !! | TATACTTGTAGAAAATATAG+GGG | + | chr3.1:85744256-85744275 | None:intergenic | 20.0% |
| !!! | AATTTTGGAAACAATTAACA+TGG | - | chr3.1:85743557-85743576 | MS.gene014785:intron | 20.0% |
| !!! | ATCCATGTTGAATTTTAAAA+AGG | + | chr3.1:85744410-85744429 | None:intergenic | 20.0% |
| !!! | CGATTAACTATATGTTTTAT+AGG | - | chr3.1:85743235-85743254 | MS.gene014785:intron | 20.0% |
| !!! | TCCATGTTGAATTTTAAAAA+GGG | + | chr3.1:85744409-85744428 | None:intergenic | 20.0% |
| !!! | TGAGGATTTTTTTTATCAAA+TGG | + | chr3.1:85743670-85743689 | None:intergenic | 20.0% |
| !!! | TTTGGAATATTGATAATATG+GGG | + | chr3.1:85743953-85743972 | None:intergenic | 20.0% |
| ! | ATACTTGTAGAAAATATAGG+GGG | + | chr3.1:85744255-85744274 | None:intergenic | 25.0% |
| ! | ATAGTTCGTACAAATATCAA+CGG | + | chr3.1:85744018-85744037 | None:intergenic | 25.0% |
| ! | GATACAATCTTACAATTTCA+AGG | + | chr3.1:85743921-85743940 | None:intergenic | 25.0% |
| ! | GTAAAGCTAAATACTCAATT+TGG | - | chr3.1:85743894-85743913 | MS.gene014785:CDS | 25.0% |
| ! | TAACACAATAAGACAATTGT+TGG | + | chr3.1:85743422-85743441 | None:intergenic | 25.0% |
| ! | TAACATGGTTGAATTTCAAA+GGG | - | chr3.1:85743572-85743591 | MS.gene014785:intron | 25.0% |
| ! | TTAACATGGTTGAATTTCAA+AGG | - | chr3.1:85743571-85743590 | MS.gene014785:intron | 25.0% |
| ! | TTGGAATATTTATAACGTGA+AGG | - | chr3.1:85744160-85744179 | MS.gene014785:CDS | 25.0% |
| ! | TTTGAAGACAATTATGCATA+GGG | - | chr3.1:85743170-85743189 | MS.gene014785:intron | 25.0% |
| !! | AAGAACACAAAATTTTCTTG+TGG | - | chr3.1:85743349-85743368 | MS.gene014785:intron | 25.0% |
| !! | ATTTTGTGTTCTTCTTTCAA+TGG | + | chr3.1:85743342-85743361 | None:intergenic | 25.0% |
| !! | TTAATCGATTTCCGAATATA+AGG | + | chr3.1:85743222-85743241 | None:intergenic | 25.0% |
| !! | TTGATTTCGTTTCTTCTTTT+GGG | - | chr3.1:85742848-85742867 | MS.gene014785:intron | 25.0% |
| !! | TTGGAATATTGATAATATGG+GGG | + | chr3.1:85743952-85743971 | None:intergenic | 25.0% |
| !!! | ACCCTTTTTAAAATTCAACA+TGG | - | chr3.1:85744405-85744424 | MS.gene014785:CDS | 25.0% |
| !!! | ATACTTAGTTGATAATACAC+GGG | - | chr3.1:85744042-85744061 | MS.gene014785:CDS | 25.0% |
| !!! | GATACTTAGTTGATAATACA+CGG | - | chr3.1:85744041-85744060 | MS.gene014785:CDS | 25.0% |
| !!! | TATTTTCCTTTGAGAATCAA+CGG | - | chr3.1:85744326-85744345 | MS.gene014785:CDS | 25.0% |
| AATAACACATAGTCAGAAAG+AGG | - | chr3.1:85743509-85743528 | MS.gene014785:intron | 30.0% | |
| ACAATTATGCATAGGGTTTA+TGG | - | chr3.1:85743177-85743196 | MS.gene014785:intron | 30.0% | |
| ATTACTAACAAGCAAGTCAA+AGG | + | chr3.1:85744374-85744393 | None:intergenic | 30.0% | |
| CAAAACATCAAAACATGACT+CGG | - | chr3.1:85742522-85742541 | MS.gene014785:CDS | 30.0% | |
| CAGCACTTTAGTCATTTATT+TGG | + | chr3.1:85744295-85744314 | None:intergenic | 30.0% | |
| GTCATTGTTCCATAAGTAAA+GGG | + | chr3.1:85744454-85744473 | None:intergenic | 30.0% | |
| GTTTGAAGACAATTATGCAT+AGG | - | chr3.1:85743169-85743188 | MS.gene014785:intron | 30.0% | |
| TAATGTTCGAAAGATGTTCA+AGG | - | chr3.1:85744587-85744606 | MS.gene014785:CDS | 30.0% | |
| TAGGGTTTATGGAAAATTCA+TGG | - | chr3.1:85743188-85743207 | MS.gene014785:intron | 30.0% | |
| TATTTATAACGTGAAGGACT+AGG | - | chr3.1:85744166-85744185 | MS.gene014785:CDS | 30.0% | |
| TCTTTCTGACTATGTGTTAT+TGG | + | chr3.1:85743510-85743529 | None:intergenic | 30.0% | |
| TGGTTCATAGACCTTATATT+CGG | - | chr3.1:85743208-85743227 | MS.gene014785:intron | 30.0% | |
| TGTTACACAGTTTATAGAGA+AGG | - | chr3.1:85743437-85743456 | MS.gene014785:intron | 30.0% | |
| TTCGTTTATTTCGACATTGT+TGG | - | chr3.1:85743110-85743129 | MS.gene014785:intron | 30.0% | |
| TTGAGACTGAGAAACATAAT+GGG | - | chr3.1:85743265-85743284 | MS.gene014785:intron | 30.0% | |
| ! | AAATTTCTTCAAGTTCACCA+AGG | + | chr3.1:85743542-85743561 | None:intergenic | 30.0% |
| ! | AATTCAACATGGATTGTTTC+AGG | - | chr3.1:85744416-85744435 | MS.gene014785:CDS | 30.0% |
| ! | ATGTATTTGATAACAGATCC+AGG | - | chr3.1:85744092-85744111 | MS.gene014785:CDS | 30.0% |
| ! | ATTGATAATATGGGGGATTA+GGG | + | chr3.1:85743945-85743964 | None:intergenic | 30.0% |
| ! | GATTTAGAGCATGAATCTAT+TGG | + | chr3.1:85743732-85743751 | None:intergenic | 30.0% |
| ! | GGGATGAATTTTACATTAAG+TGG | - | chr3.1:85744062-85744081 | MS.gene014785:CDS | 30.0% |
| ! | TATTGATAATATGGGGGATT+AGG | + | chr3.1:85743946-85743965 | None:intergenic | 30.0% |
| ! | TCATGCTCTAAATCTATAGT+TGG | - | chr3.1:85743738-85743757 | MS.gene014785:CDS | 30.0% |
| ! | TGATTAACACTTCGCAATTT+TGG | + | chr3.1:85743984-85744003 | None:intergenic | 30.0% |
| ! | TGCAATTTCTGTGATCATTT+TGG | - | chr3.1:85744141-85744160 | MS.gene014785:CDS | 30.0% |
| ! | TGGTGAACTTGAAGAAATTT+TGG | - | chr3.1:85743542-85743561 | MS.gene014785:intron | 30.0% |
| ! | TTTGAGACTGAGAAACATAA+TGG | - | chr3.1:85743264-85743283 | MS.gene014785:intron | 30.0% |
| !! | ATTTTCCTTTGAGAATCAAC+GGG | - | chr3.1:85744327-85744346 | MS.gene014785:CDS | 30.0% |
| !! | GCAATTTTGGAGATCATTTT+TGG | + | chr3.1:85743971-85743990 | None:intergenic | 30.0% |
| !! | GTATTTAGCTTTACTCAAAC+AGG | + | chr3.1:85743888-85743907 | None:intergenic | 30.0% |
| !! | GTTGATTTCGTTTCTTCTTT+TGG | - | chr3.1:85742847-85742866 | MS.gene014785:intron | 30.0% |
| !! | TAAGGGGTTTGTTGAAATAT+TGG | - | chr3.1:85743484-85743503 | MS.gene014785:intron | 30.0% |
| !! | TGCTCTATATAGTCATTTTC+TGG | - | chr3.1:85743777-85743796 | MS.gene014785:CDS | 30.0% |
| !!! | ATTTTTGGGAGTATCATAAG+TGG | - | chr3.1:85743306-85743325 | MS.gene014785:intron | 30.0% |
| AAGGAACCAAAGCAAATCAA+AGG | + | chr3.1:85744355-85744374 | None:intergenic | 35.0% | |
| AGATGTGAAGAGAAAAACGT+TGG | - | chr3.1:85742816-85742835 | MS.gene014785:intron | 35.0% | |
| ATAGATCTAGGCTTATGCAA+AGG | + | chr3.1:85743387-85743406 | None:intergenic | 35.0% | |
| ATAGGAATGCCCAAATAATG+AGG | + | chr3.1:85743688-85743707 | None:intergenic | 35.0% | |
| ATCTTCTTGTCTTGATGCTA+AGG | - | chr3.1:85743065-85743084 | MS.gene014785:intron | 35.0% | |
| CGATTATGAGCCCTATAATT+TGG | + | chr3.1:85742949-85742968 | None:intergenic | 35.0% | |
| GAGCAATCAAATTGACAATG+TGG | + | chr3.1:85744476-85744495 | None:intergenic | 35.0% | |
| GCTGTGAAAATTCTTCTCTA+GGG | + | chr3.1:85744535-85744554 | None:intergenic | 35.0% | |
| GGTCATTGTTCCATAAGTAA+AGG | + | chr3.1:85744455-85744474 | None:intergenic | 35.0% | |
| GTTGGAGTTGTTTAATTCAG+AGG | - | chr3.1:85743128-85743147 | MS.gene014785:intron | 35.0% | |
| GTTTAATTCAGAGGATCCTA+GGG | - | chr3.1:85743137-85743156 | MS.gene014785:intron | 35.0% | |
| TAAACTCAGAATCCGAGAAA+CGG | - | chr3.1:85744670-85744689 | MS.gene014785:CDS | 35.0% | |
| TAGATCTAGGCTTATGCAAA+GGG | + | chr3.1:85743386-85743405 | None:intergenic | 35.0% | |
| TATAGGGCTCATAATCGAAT+TGG | - | chr3.1:85742952-85742971 | MS.gene014785:intron | 35.0% | |
| TATCCAATTCGCCAAAACAA+TGG | + | chr3.1:85743606-85743625 | None:intergenic | 35.0% | |
| TCGAAAGATGTTCAAGGAAA+TGG | - | chr3.1:85744593-85744612 | MS.gene014785:CDS | 35.0% | |
| TGATAGGTAGTATCACTTGA+CGG | + | chr3.1:85744503-85744522 | None:intergenic | 35.0% | |
| TGTTTAATTCAGAGGATCCT+AGG | - | chr3.1:85743136-85743155 | MS.gene014785:intron | 35.0% | |
| TTATGAGCCCTATAATTTGG+CGG | + | chr3.1:85742946-85742965 | None:intergenic | 35.0% | |
| TTCGTACAAATATCAACGGA+TGG | + | chr3.1:85744014-85744033 | None:intergenic | 35.0% | |
| TTGCATAAGCCTAGATCTAT+GGG | - | chr3.1:85743387-85743406 | MS.gene014785:intron | 35.0% | |
| TTTGCATAAGCCTAGATCTA+TGG | - | chr3.1:85743386-85743405 | MS.gene014785:intron | 35.0% | |
| ! | AGAAGAATTTTCACAGCCAT+TGG | - | chr3.1:85744538-85744557 | MS.gene014785:CDS | 35.0% |
| ! | CTGAGTTGTTGGAGATTTTT+GGG | - | chr3.1:85743292-85743311 | MS.gene014785:intron | 35.0% |
| ! | GACTCAACTTGCTTACAAAA+AGG | + | chr3.1:85742744-85742763 | None:intergenic | 35.0% |
| ! | TCGTAAACAAGTTGAAGATG+AGG | + | chr3.1:85743024-85743043 | None:intergenic | 35.0% |
| !!! | TCATGTTTTGATGTTTTGCG+AGG | + | chr3.1:85742520-85742539 | None:intergenic | 35.0% |
| !!! | TTGTGAACGGTTGTTTTTAC+CGG | + | chr3.1:85742590-85742609 | None:intergenic | 35.0% |
| AAAAACAACCGTTCACAAGG+TGG | - | chr3.1:85742592-85742611 | MS.gene014785:CDS | 40.0% | |
| AAGTAAACCCCCATAGATCT+AGG | + | chr3.1:85743399-85743418 | None:intergenic | 40.0% | |
| AATCGGAGAGACTAAAACAG+CGG | + | chr3.1:85744754-85744773 | None:intergenic | 40.0% | |
| ATCACAATGCTTGCCAACTT+AGG | + | chr3.1:85743465-85743484 | None:intergenic | 40.0% | |
| CAGAAAGAGGTAATGTTCCT+TGG | - | chr3.1:85743522-85743541 | MS.gene014785:intron | 40.0% | |
| CATGAGCAGTTTACACTTTC+AGG | - | chr3.1:85743629-85743648 | MS.gene014785:CDS | 40.0% | |
| CTACACATTGCAAGAATAGC+TGG | + | chr3.1:85742892-85742911 | None:intergenic | 40.0% | |
| CTGAAAGAGCCCTTTACTTA+TGG | - | chr3.1:85744442-85744461 | MS.gene014785:CDS | 40.0% | |
| GAAAGGGTAAATGCCTAAGT+TGG | + | chr3.1:85744218-85744237 | None:intergenic | 40.0% | |
| GAGCTAGGAACATCCTTAAA+CGG | + | chr3.1:85742709-85742728 | None:intergenic | 40.0% | |
| GCAATTTCAGTGACCAACTT+AGG | - | chr3.1:85744202-85744221 | MS.gene014785:CDS | 40.0% | |
| GGCTGTGAAAATTCTTCTCT+AGG | + | chr3.1:85744536-85744555 | None:intergenic | 40.0% | |
| GGTAAAAACAACCGTTCACA+AGG | - | chr3.1:85742589-85742608 | MS.gene014785:CDS | 40.0% | |
| GGTTGAATTTCAAAGGGTCA+TGG | - | chr3.1:85743578-85743597 | MS.gene014785:intron | 40.0% | |
| GTTTAAGGATGTTCCTAGCT+CGG | - | chr3.1:85742708-85742727 | MS.gene014785:CDS | 40.0% | |
| TAATGGGATTGCTGAGTTGT+TGG | - | chr3.1:85743281-85743300 | MS.gene014785:intron | 40.0% | |
| TACACTGAGAACGACAAGTA+AGG | + | chr3.1:85744632-85744651 | None:intergenic | 40.0% | |
| TACTTGTCGTTCTCAGTGTA+AGG | - | chr3.1:85744632-85744651 | MS.gene014785:CDS | 40.0% | |
| TATAGAGAAGGAGCCTAAGT+TGG | - | chr3.1:85743449-85743468 | MS.gene014785:intron | 40.0% | |
| TATGAGCCCTATAATTTGGC+GGG | + | chr3.1:85742945-85742964 | None:intergenic | 40.0% | |
| TGATAACAGATCCAGGCAAA+GGG | - | chr3.1:85744099-85744118 | MS.gene014785:CDS | 40.0% | |
| TGCATAAGCCTAGATCTATG+GGG | - | chr3.1:85743388-85743407 | MS.gene014785:intron | 40.0% | |
| TTCAAACAATCCCTTTCCCT+AGG | + | chr3.1:85743156-85743175 | None:intergenic | 40.0% | |
| TTTACCCTTTCTCGCTTCTT+TGG | - | chr3.1:85744227-85744246 | MS.gene014785:CDS | 40.0% | |
| ! | AGTTGGCAAGCATTGTGATA+AGG | - | chr3.1:85743466-85743485 | MS.gene014785:intron | 40.0% |
| ! | CGTTTTCCCGCCAAATTATA+GGG | - | chr3.1:85742936-85742955 | MS.gene014785:intron | 40.0% |
| ! | GCTGAGTTGTTGGAGATTTT+TGG | - | chr3.1:85743291-85743310 | MS.gene014785:intron | 40.0% |
| ! | GTTGGCAAGCATTGTGATAA+GGG | - | chr3.1:85743467-85743486 | MS.gene014785:intron | 40.0% |
| ! | TAGTTGGTCTAGTTGCAACT+TGG | - | chr3.1:85743754-85743773 | MS.gene014785:CDS | 40.0% |
| ! | TCTAGGGCTGGAAATATGAT+AGG | + | chr3.1:85744519-85744538 | None:intergenic | 40.0% |
| ! | TTGATAACAGATCCAGGCAA+AGG | - | chr3.1:85744098-85744117 | MS.gene014785:CDS | 40.0% |
| ! | TTGGCAAGCATTGTGATAAG+GGG | - | chr3.1:85743468-85743487 | MS.gene014785:intron | 40.0% |
| !! | TGAAAATTCTTCTCTAGGGC+TGG | + | chr3.1:85744531-85744550 | None:intergenic | 40.0% |
| !! | TTCAAGTTTTTCCCTTTGCC+TGG | + | chr3.1:85744113-85744132 | None:intergenic | 40.0% |
| !!! | GTACCATTGTTTTGGCGAAT+TGG | - | chr3.1:85743600-85743619 | MS.gene014785:intron | 40.0% |
| ACATCCTTAAACGGCACCAA+CGG | + | chr3.1:85742700-85742719 | None:intergenic | 45.0% | |
| AGGGCTCATAATCGAATTGG+TGG | - | chr3.1:85742955-85742974 | MS.gene014785:intron | 45.0% | |
| ATTCAGAGGATCCTAGGGAA+AGG | - | chr3.1:85743142-85743161 | MS.gene014785:intron | 45.0% | |
| CAACGGTTCAATCAACGACA+CGG | + | chr3.1:85742683-85742702 | None:intergenic | 45.0% | |
| CACAACGTTCTTACCAGGAT+CGG | + | chr3.1:85742791-85742810 | None:intergenic | 45.0% | |
| CCATGCTTCATTCCGTTTCT+CGG | + | chr3.1:85744685-85744704 | None:intergenic | 45.0% | |
| GAAAAGGAATTCATCCGCTG+CGG | - | chr3.1:85742642-85742661 | MS.gene014785:CDS | 45.0% | |
| GACCTCAGACTTCTACAAGA+GGG | + | chr3.1:85743832-85743851 | None:intergenic | 45.0% | |
| GCATAAGCCTAGATCTATGG+GGG | - | chr3.1:85743389-85743408 | MS.gene014785:intron | 45.0% | |
| GCTCATAATCGAATTGGTGG+CGG | - | chr3.1:85742958-85742977 | MS.gene014785:intron | 45.0% | |
| TGACCTCAGACTTCTACAAG+AGG | + | chr3.1:85743833-85743852 | None:intergenic | 45.0% | |
| TTCAGAGGATCCTAGGGAAA+GGG | - | chr3.1:85743143-85743162 | MS.gene014785:intron | 45.0% | |
| TTCTCCACAACGTTCTTACC+AGG | + | chr3.1:85742796-85742815 | None:intergenic | 45.0% | |
| TTGTCGTTCTCAGTGTAAGG+AGG | - | chr3.1:85744635-85744654 | MS.gene014785:CDS | 45.0% | |
| ! | AACCAGCTTTTGATCCTGCT+TGG | - | chr3.1:85742998-85743017 | MS.gene014785:intron | 45.0% |
| ! | AGCGGATGAATTCCTTTTCG+CGG | + | chr3.1:85742641-85742660 | None:intergenic | 45.0% |
| ! | AGGTTCATTTTCTCCGAGCT+AGG | + | chr3.1:85742724-85742743 | None:intergenic | 45.0% |
| ! | GCGTTTTCCCGCCAAATTAT+AGG | - | chr3.1:85742935-85742954 | MS.gene014785:intron | 45.0% |
| ! | GGGTCATGGTACCATTGTTT+TGG | - | chr3.1:85743592-85743611 | MS.gene014785:intron | 45.0% |
| !! | AGGAACCCGTTGATTCTCAA+AGG | + | chr3.1:85744335-85744354 | None:intergenic | 45.0% |
| !! | CGGGTTCCTTTGATTTGCTT+TGG | - | chr3.1:85744346-85744365 | MS.gene014785:CDS | 45.0% |
| !! | TGAGTTAAGTTGAGCACTGC+TGG | + | chr3.1:85744567-85744586 | None:intergenic | 45.0% |
| AGTTGAAGATGAGGCCAAGC+AGG | + | chr3.1:85743015-85743034 | None:intergenic | 50.0% | |
| ATCAACGACACGGTGCTTGT+CGG | + | chr3.1:85742673-85742692 | None:intergenic | 50.0% | |
| CATCGTTGCCACCTTGTGAA+CGG | + | chr3.1:85742603-85742622 | None:intergenic | 50.0% | |
| CCGAGAAACGGAATGAAGCA+TGG | - | chr3.1:85744682-85744701 | MS.gene014785:CDS | 50.0% | |
| CGATCCTGGTAAGAACGTTG+TGG | - | chr3.1:85742789-85742808 | MS.gene014785:CDS | 50.0% | |
| GACCCTCTTGTAGAAGTCTG+AGG | - | chr3.1:85743827-85743846 | MS.gene014785:CDS | 50.0% | |
| GGCTCCAAAGAAGCGAGAAA+GGG | + | chr3.1:85744234-85744253 | None:intergenic | 50.0% | |
| GTTCACAAGGTGGCAACGAT+GGG | - | chr3.1:85742602-85742621 | MS.gene014785:CDS | 50.0% | |
| TTCACAAGGTGGCAACGATG+GGG | - | chr3.1:85742603-85742622 | MS.gene014785:CDS | 50.0% | |
| ! | CGTGTCGTTGATTGAACCGT+TGG | - | chr3.1:85742681-85742700 | MS.gene014785:CDS | 50.0% |
| ! | GCGTTTGATTTCACCGATCC+TGG | - | chr3.1:85742775-85742794 | MS.gene014785:CDS | 50.0% |
| ! | TGAATTCCTTTTCGCGGCGT+TGG | + | chr3.1:85742635-85742654 | None:intergenic | 50.0% |
| ! | TGAGCACTGCTGGATTCCAA+TGG | + | chr3.1:85744557-85744576 | None:intergenic | 50.0% |
| !! | TGAACCGTTGGTGCCGTTTA+AGG | - | chr3.1:85742693-85742712 | MS.gene014785:CDS | 50.0% |
| CGTTCACAAGGTGGCAACGA+TGG | - | chr3.1:85742601-85742620 | MS.gene014785:CDS | 55.0% | |
| GGCCAAGCAGGATCAAAAGC+TGG | + | chr3.1:85743003-85743022 | None:intergenic | 55.0% | |
| GGGCTCCAAAGAAGCGAGAA+AGG | + | chr3.1:85744235-85744254 | None:intergenic | 55.0% | |
| GTAAAGCCAACGCCGCGAAA+AGG | - | chr3.1:85742626-85742645 | MS.gene014785:CDS | 55.0% | |
| TCAACGACACGGTGCTTGTC+GGG | + | chr3.1:85742672-85742691 | None:intergenic | 55.0% | |
| TCACAAGGTGGCAACGATGG+GGG | - | chr3.1:85742604-85742623 | MS.gene014785:CDS | 55.0% | |
| ACAGCGGTGTTTCCGACTGC+AGG | + | chr3.1:85744738-85744757 | None:intergenic | 60.0% | |
| CACGATTCGTCTCGAGTCGC+CGG | - | chr3.1:85742568-85742587 | MS.gene014785:CDS | 60.0% | |
| GCCAGTCTCAAGCCTGCAGT+CGG | - | chr3.1:85744723-85744742 | MS.gene014785:CDS | 60.0% | |
| GCTTGTCGGGAAAACCGCAG+CGG | + | chr3.1:85742659-85742678 | None:intergenic | 60.0% | |
| TCCGACTGCAGGCTTGAGAC+TGG | + | chr3.1:85744727-85744746 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85742490 | 85744776 | 85742490 | ID=MS.gene014785 |
| chr3.1 | mRNA | 85742490 | 85744776 | 85742490 | ID=MS.gene014785.t1;Parent=MS.gene014785 |
| chr3.1 | exon | 85743616 | 85744776 | 85743616 | ID=MS.gene014785.t1.exon1;Parent=MS.gene014785.t1 |
| chr3.1 | CDS | 85743616 | 85744776 | 85743616 | ID=cds.MS.gene014785.t1;Parent=MS.gene014785.t1 |
| chr3.1 | exon | 85742490 | 85742828 | 85742490 | ID=MS.gene014785.t1.exon2;Parent=MS.gene014785.t1 |
| chr3.1 | CDS | 85742490 | 85742828 | 85742490 | ID=cds.MS.gene014785.t1;Parent=MS.gene014785.t1 |
| Gene Sequence |
| Protein sequence |
