Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25819.t1 | XP_003601378.1 | 97.8 | 535 | 12 | 0 | 1 | 535 | 1 | 535 | 6.20E-271 | 943 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25819.t1 | Q9LVE2 | 74.6 | 536 | 127 | 4 | 1 | 529 | 1 | 534 | 1.8e-202 | 706.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25819.t1 | G7J6P7 | 97.8 | 535 | 12 | 0 | 1 | 535 | 1 | 535 | 4.5e-271 | 943.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25819 | MS.gene029756 | PPI |
| MS.gene25819 | MS.gene067043 | PPI |
| MS.gene25819 | MS.gene044183 | PPI |
| MS.gene25819 | MS.gene007562 | PPI |
| MS.gene25819 | MS.gene072957 | PPI |
| MS.gene25819 | MS.gene015941 | PPI |
| MS.gene25819 | MS.gene051425 | PPI |
| MS.gene25819 | MS.gene021631 | PPI |
| MS.gene25819 | MS.gene22385 | PPI |
| MS.gene25819 | MS.gene014785 | PPI |
| MS.gene25819 | MS.gene70740 | PPI |
| MS.gene25819 | MS.gene75564 | PPI |
| MS.gene25819 | MS.gene020631 | PPI |
| MS.gene25819 | MS.gene045221 | PPI |
| MS.gene044183 | MS.gene25819 | PPI |
| MS.gene25819 | MS.gene007383 | PPI |
| MS.gene25819 | MS.gene47441 | PPI |
| MS.gene25819 | MS.gene035014 | PPI |
| MS.gene25819 | MS.gene71483 | PPI |
| MS.gene25819 | MS.gene79120 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25819.t1 | MTR_3g080070 | 98.879 | 535 | 6 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1098 |
| MS.gene25819.t1 | MTR_6g022720 | 66.286 | 525 | 156 | 4 | 1 | 523 | 1 | 506 | 0.0 | 713 |
| MS.gene25819.t1 | MTR_3g086010 | 64.381 | 525 | 174 | 5 | 1 | 524 | 1 | 513 | 0.0 | 699 |
| MS.gene25819.t1 | MTR_1g062950 | 62.419 | 463 | 173 | 1 | 47 | 509 | 14 | 475 | 0.0 | 583 |
| MS.gene25819.t1 | MTR_1g111570 | 57.851 | 484 | 196 | 3 | 40 | 523 | 13 | 488 | 0.0 | 576 |
| MS.gene25819.t1 | MTR_6g022720 | 67.470 | 415 | 115 | 3 | 1 | 413 | 1 | 397 | 0.0 | 572 |
| MS.gene25819.t1 | MTR_1g011460 | 54.580 | 524 | 203 | 4 | 1 | 523 | 1 | 490 | 0.0 | 568 |
| MS.gene25819.t1 | MTR_3g107980 | 54.198 | 524 | 212 | 5 | 1 | 523 | 1 | 497 | 0.0 | 562 |
| MS.gene25819.t1 | MTR_4g113020 | 52.142 | 537 | 225 | 4 | 1 | 534 | 1 | 508 | 0.0 | 550 |
| MS.gene25819.t1 | MTR_7g102900 | 65.289 | 363 | 126 | 0 | 59 | 421 | 8 | 370 | 4.60e-170 | 486 |
| MS.gene25819.t1 | MTR_4g113020 | 54.785 | 418 | 157 | 4 | 1 | 415 | 1 | 389 | 5.49e-155 | 448 |
| MS.gene25819.t1 | MTR_1g112940 | 41.730 | 393 | 227 | 1 | 117 | 509 | 43 | 433 | 3.84e-118 | 356 |
| MS.gene25819.t1 | MTR_7g102920 | 59.794 | 97 | 39 | 0 | 413 | 509 | 22 | 118 | 5.07e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25819.t1 | AT4G15415 | 71.136 | 537 | 130 | 6 | 1 | 533 | 1 | 516 | 0.0 | 776 |
| MS.gene25819.t1 | AT4G15415 | 71.136 | 537 | 130 | 6 | 1 | 533 | 1 | 516 | 0.0 | 776 |
| MS.gene25819.t1 | AT4G15415 | 71.136 | 537 | 130 | 6 | 1 | 533 | 1 | 516 | 0.0 | 776 |
| MS.gene25819.t1 | AT4G15415 | 71.136 | 537 | 130 | 6 | 1 | 533 | 1 | 516 | 0.0 | 776 |
| MS.gene25819.t1 | AT3G21650 | 70.446 | 538 | 146 | 7 | 1 | 529 | 1 | 534 | 0.0 | 766 |
| MS.gene25819.t1 | AT3G21650 | 70.446 | 538 | 146 | 7 | 1 | 529 | 1 | 534 | 0.0 | 766 |
| MS.gene25819.t1 | AT3G26020 | 65.649 | 524 | 156 | 4 | 1 | 514 | 1 | 510 | 0.0 | 687 |
| MS.gene25819.t1 | AT3G26020 | 65.649 | 524 | 156 | 4 | 1 | 514 | 1 | 510 | 0.0 | 687 |
| MS.gene25819.t1 | AT3G26020 | 65.649 | 524 | 156 | 4 | 1 | 514 | 1 | 510 | 0.0 | 687 |
| MS.gene25819.t1 | AT3G26020 | 65.649 | 524 | 156 | 4 | 1 | 514 | 1 | 510 | 0.0 | 687 |
| MS.gene25819.t1 | AT1G13460 | 70.705 | 454 | 130 | 2 | 59 | 509 | 31 | 484 | 0.0 | 682 |
| MS.gene25819.t1 | AT1G13460 | 70.705 | 454 | 130 | 2 | 59 | 509 | 31 | 484 | 0.0 | 682 |
| MS.gene25819.t1 | AT3G26030 | 58.480 | 513 | 172 | 5 | 1 | 511 | 1 | 474 | 0.0 | 608 |
| MS.gene25819.t1 | AT4G15415 | 71.770 | 418 | 94 | 5 | 1 | 414 | 1 | 398 | 0.0 | 605 |
| MS.gene25819.t1 | AT3G26020 | 56.119 | 572 | 150 | 6 | 1 | 514 | 1 | 529 | 0.0 | 594 |
| MS.gene25819.t1 | AT3G09880 | 66.906 | 417 | 138 | 0 | 93 | 509 | 67 | 483 | 0.0 | 581 |
| MS.gene25819.t1 | AT5G03470 | 56.410 | 507 | 195 | 4 | 1 | 507 | 1 | 481 | 0.0 | 577 |
| MS.gene25819.t1 | AT3G26020 | 56.216 | 555 | 159 | 8 | 1 | 514 | 1 | 512 | 0.0 | 569 |
| MS.gene25819.t1 | AT3G26020 | 56.216 | 555 | 159 | 8 | 1 | 514 | 1 | 512 | 0.0 | 569 |
| MS.gene25819.t1 | AT3G26020 | 56.216 | 555 | 159 | 8 | 1 | 514 | 1 | 512 | 0.0 | 569 |
| MS.gene25819.t1 | AT5G25510 | 53.774 | 530 | 214 | 4 | 1 | 530 | 1 | 499 | 0.0 | 563 |
| MS.gene25819.t1 | AT3G54930 | 57.050 | 461 | 190 | 2 | 51 | 509 | 38 | 492 | 0.0 | 529 |
| MS.gene25819.t1 | AT3G54930 | 57.050 | 461 | 190 | 2 | 51 | 509 | 38 | 492 | 0.0 | 529 |
| MS.gene25819.t1 | AT3G54930 | 56.486 | 370 | 148 | 2 | 47 | 414 | 39 | 397 | 1.49e-142 | 417 |
Find 103 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAATGTTGGAGATTT+TGG | 0.059751 | 3.2:-70281468 | MS.gene25819:CDS |
| ACTATTCTTCATCGTATTTA+TGG | 0.088355 | 3.2:-70281581 | MS.gene25819:CDS |
| GTTCCTTGATTTCATCTTCT+TGG | 0.144870 | 3.2:+70274491 | None:intergenic |
| CCTCACCAGCCTACACTTTC+AGG | 0.182591 | 3.2:-70281129 | MS.gene25819:intron |
| ACGAGGCTTTGCCGAGTTTC+CGG | 0.225248 | 3.2:-70282063 | MS.gene25819:CDS |
| TCTTCAAAATCTTCAAGTTC+TGG | 0.228625 | 3.2:-70282196 | MS.gene25819:CDS |
| TCAAATATTCCCTCTCTCTT+TGG | 0.245719 | 3.2:+70281606 | None:intergenic |
| TCCTTTGCACTATTAGTTAC+AGG | 0.259155 | 3.2:+70281251 | None:intergenic |
| TTCCATGCTGGTTCCATTGC+AGG | 0.271077 | 3.2:+70281758 | None:intergenic |
| TTAGCTGATACTGTGATTAA+AGG | 0.280130 | 3.2:-70281290 | MS.gene25819:CDS |
| CTTCAAAATCTTCAAGTTCT+GGG | 0.320774 | 3.2:-70282195 | MS.gene25819:CDS |
| GGAATCCATGTGGAAGAAAT+TGG | 0.329641 | 3.2:-70274449 | MS.gene25819:CDS |
| CGAGGCTTTGCCGAGTTTCC+GGG | 0.334520 | 3.2:-70282062 | MS.gene25819:CDS |
| TGGCGGCGGCAAATTTGTTT+AGG | 0.342001 | 3.2:-70281844 | MS.gene25819:CDS |
| ACCGATAATCTTCCCTGCTT+TGG | 0.344112 | 3.2:-70274626 | MS.gene25819:CDS |
| CTATTCTTCATCGTATTTAT+GGG | 0.351219 | 3.2:-70281580 | MS.gene25819:CDS |
| ATCCCAAGTTGGTTTGATAA+TGG | 0.351720 | 3.2:-70282104 | MS.gene25819:CDS |
| GGGTTGGTCAATGGCGGCTT+TGG | 0.351728 | 3.2:-70282268 | MS.gene25819:CDS |
| ATTGCAGGTTCCTCTTCTTC+AGG | 0.359789 | 3.2:+70281773 | None:intergenic |
| AGAAGCTGAATTAGATTTCA+AGG | 0.385056 | 3.2:+70282216 | None:intergenic |
| TTCATTGAACTTTGAATTCA+CGG | 0.389836 | 3.2:+70281892 | None:intergenic |
| TCCAAAGCAGGGAAGATTAT+CGG | 0.391859 | 3.2:+70274625 | None:intergenic |
| CAAATTTGCCGCCGCCATCT+TGG | 0.394302 | 3.2:+70281850 | None:intergenic |
| TGGATTTGCTTTGCCTTTGA+AGG | 0.397088 | 3.2:-70281432 | MS.gene25819:CDS |
| GCAAGCTTTGCATCCGTCTC+TGG | 0.404470 | 3.2:+70281689 | None:intergenic |
| TGAAGTTCTCTATAGGTTTG+TGG | 0.407674 | 3.2:-70281717 | MS.gene25819:CDS |
| TTGTGTATGAAGTTCTCTAT+AGG | 0.409717 | 3.2:-70281724 | MS.gene25819:CDS |
| ATTAGATTTCAAGGTGTCAT+TGG | 0.410207 | 3.2:+70282225 | None:intergenic |
| TCGTATTTATGGGAAGTTCA+TGG | 0.411443 | 3.2:-70281570 | MS.gene25819:CDS |
| AAGAAATCAGCTCCTGCAAT+TGG | 0.415691 | 3.2:-70282127 | MS.gene25819:CDS |
| GTTGGTTTGATAATGGCTAA+TGG | 0.428848 | 3.2:-70282097 | MS.gene25819:CDS |
| CTGAAATTCAGCTGCTTGAG+TGG | 0.440484 | 3.2:+70281190 | None:intergenic |
| CCAACTTGGGATCCAATTGC+AGG | 0.455386 | 3.2:+70282115 | None:intergenic |
| CAGGAGCTGATTTCTTAGCT+TGG | 0.457303 | 3.2:+70282134 | None:intergenic |
| AATCTTCAAGTTCTGGGAAT+GGG | 0.461006 | 3.2:-70282189 | MS.gene25819:CDS |
| ATGGCTGCAGGTAGCTGAAC+GGG | 0.463924 | 3.2:-70274713 | MS.gene25819:intron |
| CCTGCAATTGGATCCCAAGT+TGG | 0.482538 | 3.2:-70282115 | MS.gene25819:CDS |
| CTAGAAACATCCCGGAAACT+CGG | 0.489064 | 3.2:+70282052 | None:intergenic |
| ACGAGAGAAGCAAGAGAAGC+GGG | 0.492255 | 3.2:-70274470 | MS.gene25819:CDS |
| TTGATAATGGCTAATGGTAA+TGG | 0.493661 | 3.2:-70282091 | MS.gene25819:CDS |
| ATTCCAAGAAGATGAAATCA+AGG | 0.493991 | 3.2:-70274494 | MS.gene25819:CDS |
| CACACTTTGGCTTGTGAAGT+GGG | 0.495213 | 3.2:+70281375 | None:intergenic |
| TTCTCTTTAACATGCTTGCT+AGG | 0.496798 | 3.2:+70281962 | None:intergenic |
| TAGCCATTATCAAACCAACT+TGG | 0.499232 | 3.2:+70282101 | None:intergenic |
| AAATCTTCAAGTTCTGGGAA+TGG | 0.502305 | 3.2:-70282190 | MS.gene25819:CDS |
| GTGGGATCAATGCACGGGTA+AGG | 0.507555 | 3.2:+70281393 | None:intergenic |
| TTTCCGGGATGTTTCTAGCT+CGG | 0.507794 | 3.2:-70282047 | MS.gene25819:CDS |
| CAACGGAATTGCAGAAATGT+TGG | 0.508886 | 3.2:-70281477 | MS.gene25819:CDS |
| ATCTTCCAATTTCTTCCACA+TGG | 0.518321 | 3.2:+70274444 | None:intergenic |
| AGCTTATGCTCTTCCTTCAA+AGG | 0.523049 | 3.2:+70281419 | None:intergenic |
| AGCATATGATCCTGAAGAAG+AGG | 0.524358 | 3.2:-70281783 | MS.gene25819:CDS |
| AGTGATGGAGGGTTGGTCAA+TGG | 0.527085 | 3.2:-70282277 | MS.gene25819:CDS |
| ACACACTTTGGCTTGTGAAG+TGG | 0.530715 | 3.2:+70281374 | None:intergenic |
| TCACATTCAGAGTCAAACTC+TGG | 0.532668 | 3.2:+70274569 | None:intergenic |
| GCAAAGGAGGTAATGTTCCT+TGG | 0.533135 | 3.2:-70281236 | MS.gene25819:CDS |
| GAATTCAAAGTTCAATGAAA+CGG | 0.537784 | 3.2:-70281888 | MS.gene25819:CDS |
| TGATACATAGAGACACACTT+TGG | 0.538632 | 3.2:+70281362 | None:intergenic |
| AGCCATTATCAAACCAACTT+GGG | 0.538921 | 3.2:+70282102 | None:intergenic |
| CCTGAAAGTGTAGGCTGGTG+AGG | 0.541063 | 3.2:+70281129 | None:intergenic |
| GTGTTCAAATCATGATGGTA+AGG | 0.542812 | 3.2:-70281813 | MS.gene25819:CDS |
| CTGAACGGGCACTGTTTCTG+TGG | 0.543147 | 3.2:-70274699 | MS.gene25819:CDS |
| AACTGCAGCAACGGCAAGAG+AGG | 0.543678 | 3.2:+70274363 | None:intergenic |
| GAGTCAAACTCTGGACAGCT+TGG | 0.546137 | 3.2:+70274578 | None:intergenic |
| ACCAGCATGGAATCATCTAC+AGG | 0.548291 | 3.2:-70281747 | MS.gene25819:CDS |
| TGAAGAAGAGGAACCTGCAA+TGG | 0.551197 | 3.2:-70281771 | MS.gene25819:CDS |
| ATGAAGCAGTTCTTGCCTCA+AGG | 0.552535 | 3.2:-70274393 | MS.gene25819:CDS |
| AACGAGAGAAGCAAGAGAAG+CGG | 0.557982 | 3.2:-70274471 | MS.gene25819:CDS |
| TCTGGACAGCTTGGTTCCAG+TGG | 0.564294 | 3.2:+70274587 | None:intergenic |
| GATATGATCAAACAGATACT+TGG | 0.565210 | 3.2:-70282349 | MS.gene25819:CDS |
| ACCTGTAGATGATTCCATGC+TGG | 0.572614 | 3.2:+70281746 | None:intergenic |
| GTGAAGTGGGATCAATGCAC+GGG | 0.574083 | 3.2:+70281388 | None:intergenic |
| TGTTCAGCACCTGAAAGTGT+AGG | 0.578280 | 3.2:+70281120 | None:intergenic |
| GTTTGTGGCTTCACCAGAGA+CGG | 0.579326 | 3.2:-70281702 | MS.gene25819:CDS |
| TAGCAAGCATGTTAAAGAGA+AGG | 0.582818 | 3.2:-70281960 | MS.gene25819:CDS |
| TGCTTCATTGCTTATAGACG+TGG | 0.582925 | 3.2:+70274408 | None:intergenic |
| TTTCCGAGCTAGAAACATCC+CGG | 0.586817 | 3.2:+70282044 | None:intergenic |
| GTTTCATTGAACTGCAGCAA+CGG | 0.591067 | 3.2:+70274354 | None:intergenic |
| GCTTGACCTCTTTGACTCTG+AGG | 0.591109 | 3.2:-70281630 | MS.gene25819:CDS |
| GCCTGTAACTAATAGTGCAA+AGG | 0.595510 | 3.2:-70281252 | MS.gene25819:CDS |
| AATGTTCCTTGGTGAGCTTG+AGG | 0.596570 | 3.2:-70281225 | MS.gene25819:CDS |
| TGTAACTAATAGTGCAAAGG+AGG | 0.600085 | 3.2:-70281249 | MS.gene25819:CDS |
| TATGGCTGCAGGTAGCTGAA+CGG | 0.600807 | 3.2:-70274714 | MS.gene25819:intron |
| TGTGAAGTGGGATCAATGCA+CGG | 0.601606 | 3.2:+70281387 | None:intergenic |
| GAATTTCAGAAATGTGCGGT+GGG | 0.601924 | 3.2:-70281176 | MS.gene25819:CDS |
| AATGCAAGAGATTACCAAGA+TGG | 0.602943 | 3.2:-70281864 | MS.gene25819:CDS |
| CTCTGAGGACCAAAGAGAGA+GGG | 0.604563 | 3.2:-70281615 | MS.gene25819:CDS |
| GTGGAAGAAATTGGAAGATG+TGG | 0.612850 | 3.2:-70274440 | MS.gene25819:CDS |
| GATGGAGGGTTGGTCAATGG+CGG | 0.618063 | 3.2:-70282274 | MS.gene25819:CDS |
| AGAGATTACCAAGATGGCGG+CGG | 0.620021 | 3.2:-70281858 | MS.gene25819:CDS |
| TGAATTTCAGAAATGTGCGG+TGG | 0.623403 | 3.2:-70281177 | MS.gene25819:CDS |
| TTTGGTCCTCAGAGTCAAAG+AGG | 0.623928 | 3.2:+70281624 | None:intergenic |
| AACCTGCAATGGAACCAGCA+TGG | 0.626242 | 3.2:-70281760 | MS.gene25819:CDS |
| CAGCACCTGAAAGTGTAGGC+TGG | 0.633497 | 3.2:+70281124 | None:intergenic |
| CTACCGTGTTCAAATCATGA+TGG | 0.634397 | 3.2:-70281818 | MS.gene25819:CDS |
| ACTCTGAGGACCAAAGAGAG+AGG | 0.648939 | 3.2:-70281616 | MS.gene25819:CDS |
| TTAAAGAGAAGGATGTCAAG+AGG | 0.651885 | 3.2:-70281949 | MS.gene25819:CDS |
| GCAAGAGATTACCAAGATGG+CGG | 0.678480 | 3.2:-70281861 | MS.gene25819:CDS |
| TAATGGTAATGGAGTTTACG+AGG | 0.679671 | 3.2:-70282080 | MS.gene25819:CDS |
| AGCTGAATTTCAGAAATGTG+CGG | 0.685966 | 3.2:-70281180 | MS.gene25819:CDS |
| AAACTTCCTCAAGCTCACCA+AGG | 0.693184 | 3.2:+70281219 | None:intergenic |
| TTACCATCATGATTTGAACA+CGG | 0.713565 | 3.2:+70281815 | None:intergenic |
| AAGAGAAGCGGGAATCCATG+TGG | 0.736377 | 3.2:-70274459 | MS.gene25819:CDS |
| AAGAGAGGAAGCGAACCTTG+AGG | 0.738639 | 3.2:+70274378 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 70274357 | 70282368 | 70274357 | ID=MS.gene25819 |
| chr3.2 | mRNA | 70274357 | 70282368 | 70274357 | ID=MS.gene25819.t1;Parent=MS.gene25819 |
| chr3.2 | exon | 70281130 | 70282368 | 70281130 | ID=MS.gene25819.t1.exon1;Parent=MS.gene25819.t1 |
| chr3.2 | CDS | 70281130 | 70282368 | 70281130 | ID=cds.MS.gene25819.t1;Parent=MS.gene25819.t1 |
| chr3.2 | exon | 70274357 | 70274725 | 70274357 | ID=MS.gene25819.t1.exon2;Parent=MS.gene25819.t1 |
| chr3.2 | CDS | 70274357 | 70274725 | 70274357 | ID=cds.MS.gene25819.t1;Parent=MS.gene25819.t1 |
| Gene Sequence |
| Protein sequence |