Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014995.t1 | XP_003603178.2 | 96.9 | 355 | 11 | 0 | 1 | 355 | 4 | 358 | 7.20E-199 | 703 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014995.t1 | Q5C9L6 | 52.3 | 352 | 164 | 2 | 8 | 355 | 10 | 361 | 8.8e-105 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014995.t1 | I3S3W0 | 96.9 | 355 | 11 | 0 | 1 | 355 | 4 | 358 | 5.2e-199 | 703.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014995 | MS.gene37405 | PPI |
| MS.gene014995 | MS.gene071549 | PPI |
| MS.gene014995 | MS.gene071552 | PPI |
| MS.gene014995 | MS.gene32786 | PPI |
| MS.gene014995 | MS.gene066522 | PPI |
| MS.gene37405 | MS.gene014995 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014995.t1 | MTR_3g104740 | 96.901 | 355 | 11 | 0 | 1 | 355 | 4 | 358 | 0.0 | 721 |
| MS.gene014995.t1 | MTR_1g073700 | 29.778 | 225 | 151 | 5 | 78 | 297 | 576 | 798 | 3.66e-22 | 98.6 |
| MS.gene014995.t1 | MTR_1g044520 | 24.893 | 233 | 170 | 4 | 78 | 306 | 540 | 771 | 7.39e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014995.t1 | AT4G33110 | 71.831 | 355 | 100 | 0 | 1 | 355 | 1 | 355 | 0.0 | 564 |
| MS.gene014995.t1 | AT4G33110 | 71.831 | 355 | 100 | 0 | 1 | 355 | 1 | 355 | 0.0 | 564 |
| MS.gene014995.t1 | AT4G33120 | 69.296 | 355 | 109 | 0 | 1 | 355 | 1 | 355 | 0.0 | 544 |
| MS.gene014995.t1 | AT3G23510 | 26.772 | 254 | 176 | 6 | 78 | 326 | 577 | 825 | 7.76e-20 | 91.7 |
| MS.gene014995.t1 | AT3G23480 | 31.053 | 190 | 125 | 5 | 78 | 264 | 168 | 354 | 1.18e-19 | 90.1 |
| MS.gene014995.t1 | AT3G23530 | 26.378 | 254 | 177 | 6 | 78 | 326 | 577 | 825 | 1.58e-19 | 90.5 |
| MS.gene014995.t1 | AT3G23470 | 28.571 | 189 | 132 | 3 | 78 | 264 | 196 | 383 | 2.94e-19 | 89.4 |
| MS.gene014995.t1 | AT3G23470 | 28.571 | 189 | 132 | 3 | 78 | 264 | 196 | 383 | 2.94e-19 | 89.4 |
| MS.gene014995.t1 | AT3G23470 | 28.571 | 189 | 132 | 3 | 78 | 264 | 169 | 356 | 3.23e-19 | 89.0 |
| MS.gene014995.t1 | AT3G23480 | 24.906 | 265 | 186 | 9 | 68 | 326 | 137 | 394 | 4.05e-14 | 73.6 |
| MS.gene014995.t1 | AT3G23480 | 26.866 | 201 | 139 | 6 | 68 | 264 | 100 | 296 | 4.25e-14 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGTTGATTCCATAAT+TGG | 0.122160 | 3.2:+86522834 | None:intergenic |
| AATTCGTAATGTTGAGATTT+TGG | 0.142343 | 3.2:+86524817 | None:intergenic |
| GAACTGTATGACCATCTTTC+AGG | 0.193403 | 3.2:+86524026 | None:intergenic |
| GACTTTCATCAAGCCAATTA+TGG | 0.256433 | 3.2:-86522847 | MS.gene014995:CDS |
| TCTTTCTTTAAGCTGGTTCT+TGG | 0.257853 | 3.2:-86524787 | MS.gene014995:CDS |
| ATAGCTGTAGCAGAACTATT+TGG | 0.260405 | 3.2:-86522765 | MS.gene014995:CDS |
| GTCAACCATTGGCTGGTAAA+TGG | 0.264020 | 3.2:-86523042 | MS.gene014995:CDS |
| TCTAACCTCAAACATTTCTA+TGG | 0.304284 | 3.2:+86523632 | None:intergenic |
| TACAGTAGTTCCAGGGTTAC+AGG | 0.312484 | 3.2:-86523953 | MS.gene014995:CDS |
| CCTGGAACTACTGTAATTCT+TGG | 0.323390 | 3.2:+86523961 | None:intergenic |
| ATTACAAGATACTTCTTTAC+CGG | 0.330934 | 3.2:-86523262 | MS.gene014995:CDS |
| AGAAATGATGAACGAATAAA+AGG | 0.335415 | 3.2:+86523479 | None:intergenic |
| CTTGATGTCGGATGCGGTTG+GGG | 0.363488 | 3.2:-86524004 | MS.gene014995:CDS |
| TCTTGATGTCGGATGCGGTT+GGG | 0.364766 | 3.2:-86524005 | MS.gene014995:CDS |
| AGTCTCCTGATGACGGCATC+AGG | 0.366796 | 3.2:+86525055 | None:intergenic |
| CCAAGAATTACAGTAGTTCC+AGG | 0.371781 | 3.2:-86523961 | MS.gene014995:CDS |
| AACATTTGCCTACCACTTTG+AGG | 0.398255 | 3.2:-86523449 | MS.gene014995:intron |
| TCAACCATTGGCTGGTAAAT+GGG | 0.399932 | 3.2:-86523041 | MS.gene014995:CDS |
| AGAAAGTACAGTGAGCAAAT+TGG | 0.401458 | 3.2:+86524957 | None:intergenic |
| ACCTACCTCTTTCTTTAAGC+TGG | 0.401709 | 3.2:-86524794 | MS.gene014995:CDS |
| AGCCTCTTCCAATGTCTTTG+AGG | 0.408387 | 3.2:+86524087 | None:intergenic |
| TGCTCCCTGATGCCGTCATC+AGG | 0.412465 | 3.2:-86525060 | MS.gene014995:CDS |
| GAACTATTTGGATACAATAA+TGG | 0.412686 | 3.2:-86522753 | MS.gene014995:CDS |
| ACATCAGTACTGACAGCAAT+AGG | 0.445899 | 3.2:+86524841 | None:intergenic |
| TTCTTGATGTCGGATGCGGT+TGG | 0.446691 | 3.2:-86524006 | MS.gene014995:CDS |
| CTACCAAATGGACTGTCTAC+TGG | 0.453211 | 3.2:-86522800 | MS.gene014995:CDS |
| AGACATTAGTACATTTGAAA+TGG | 0.457001 | 3.2:-86523679 | MS.gene014995:CDS |
| CCAATTATGGAATCAACATA+TGG | 0.460490 | 3.2:-86522834 | MS.gene014995:CDS |
| AGCTTCACGGTGGTGTTGTA+AGG | 0.461791 | 3.2:+86525109 | None:intergenic |
| ATTGCAGATTCCTGTAACCC+TGG | 0.462607 | 3.2:+86523943 | None:intergenic |
| CGAAGAGTGGCTCAAAAGAA+TGG | 0.463992 | 3.2:-86522880 | MS.gene014995:CDS |
| GCCATCCACTTTCATCCAGT+TGG | 0.469157 | 3.2:+86523501 | None:intergenic |
| CTCTTCTGCCTCAAAGACAT+TGG | 0.471861 | 3.2:-86524095 | MS.gene014995:CDS |
| TGCTGCAGGCATAGTTCCTC+CGG | 0.476336 | 3.2:+86523243 | None:intergenic |
| TTCTCAAGAAGATATCCAAC+TGG | 0.482343 | 3.2:-86523516 | MS.gene014995:CDS |
| AAGAACCAGCTTAAAGAAAG+AGG | 0.482405 | 3.2:+86524789 | None:intergenic |
| GCAAAGATTCAGCTACCAAA+TGG | 0.488606 | 3.2:-86522812 | MS.gene014995:CDS |
| GAAAGCTGAAGTTCAGAAGA+AGG | 0.489672 | 3.2:+86524989 | None:intergenic |
| TCTCCAGTAGACAGTCCATT+TGG | 0.500310 | 3.2:+86522797 | None:intergenic |
| TTGGAAACAACCTCAAATAC+AGG | 0.508399 | 3.2:-86524768 | MS.gene014995:intron |
| ACAGTTCTTGATGTCGGATG+CGG | 0.517068 | 3.2:-86524010 | MS.gene014995:CDS |
| GATACAATAATGGTGAAGAA+TGG | 0.527408 | 3.2:-86522743 | MS.gene014995:CDS |
| ACCACCGTGAAGCTGATGCT+TGG | 0.540117 | 3.2:-86525100 | MS.gene014995:CDS |
| TGCCTCAAAGACATTGGAAG+AGG | 0.542100 | 3.2:-86524089 | MS.gene014995:CDS |
| TGAACCAAGCATCAGCTTCA+CGG | 0.542958 | 3.2:+86525096 | None:intergenic |
| GTTTCCCATTTACCAGCCAA+TGG | 0.543039 | 3.2:+86523037 | None:intergenic |
| GATATCCAACTGGATGAAAG+TGG | 0.544699 | 3.2:-86523506 | MS.gene014995:CDS |
| CAATAATGGTGAAGAATGGA+TGG | 0.562198 | 3.2:-86522739 | MS.gene014995:CDS |
| ATGTTACTGTTGTCAACCAT+TGG | 0.570038 | 3.2:-86523053 | MS.gene014995:CDS |
| TAAAGAAGTAGATTTGCTGC+AGG | 0.572831 | 3.2:+86523229 | None:intergenic |
| TACTGTTGTCAACCATTGGC+TGG | 0.579302 | 3.2:-86523049 | MS.gene014995:CDS |
| CAAGAATTACAGTAGTTCCA+GGG | 0.581678 | 3.2:-86523960 | MS.gene014995:CDS |
| GAAGTTTACCTCAAAGTGGT+AGG | 0.587833 | 3.2:+86523441 | None:intergenic |
| GAGAGATCAAACCTGAAAGA+TGG | 0.590354 | 3.2:-86524037 | MS.gene014995:CDS |
| GGTCATACAGTTCTTGATGT+CGG | 0.592044 | 3.2:-86524016 | MS.gene014995:CDS |
| GGAAACACTACGCACAAACC+AGG | 0.597454 | 3.2:-86523020 | MS.gene014995:intron |
| GGAGCTGCAGCTGCAAAATG+TGG | 0.607827 | 3.2:-86523715 | MS.gene014995:CDS |
| ACCAGCTTAAAGAAAGAGGT+AGG | 0.613974 | 3.2:+86524793 | None:intergenic |
| ACGTGTGAGTCTCCTGATGA+CGG | 0.614974 | 3.2:+86525048 | None:intergenic |
| TCCAACTGGATGAAAGTGGA+TGG | 0.617956 | 3.2:-86523502 | MS.gene014995:CDS |
| TTGATGTCGGATGCGGTTGG+GGG | 0.625116 | 3.2:-86524003 | MS.gene014995:CDS |
| ATATGAAGTTTACCTCAAAG+TGG | 0.632893 | 3.2:+86523437 | None:intergenic |
| GTCTCCTGATGACGGCATCA+GGG | 0.634408 | 3.2:+86525056 | None:intergenic |
| ACAAGATACTTCTTTACCGG+AGG | 0.634907 | 3.2:-86523259 | MS.gene014995:CDS |
| AAGGCTTGTAAGAAGAACGA+AGG | 0.696633 | 3.2:+86525008 | None:intergenic |
| ACCAAGCATCAGCTTCACGG+TGG | 0.763639 | 3.2:+86525099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCTATATATAACAAAAT+CGG | + | chr3.2:86522909-86522928 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCTATACAA+GGG | - | chr3.2:86523309-86523328 | MS.gene014995:intron | 15.0% |
| !! | TACAATATCAAGAAATATAC+CGG | + | chr3.2:86523958-86523977 | None:intergenic | 20.0% |
| !! | TGAACATTACATAAATCATA+AGG | + | chr3.2:86523692-86523711 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATCCAAACA+CGG | + | chr3.2:86523248-86523267 | None:intergenic | 20.0% |
| !!! | AATCATTTTACATCGTATTA+AGG | + | chr3.2:86523600-86523619 | None:intergenic | 20.0% |
| !!! | GTATAAGTTATTTCTATACA+AGG | - | chr3.2:86523308-86523327 | MS.gene014995:intron | 20.0% |
| ! | AGAAATGATGAACGAATAAA+AGG | + | chr3.2:86524364-86524383 | None:intergenic | 25.0% |
| ! | AGAATCATGACGAAATATAA+AGG | + | chr3.2:86524726-86524745 | None:intergenic | 25.0% |
| ! | AGACATTAGTACATTTGAAA+TGG | - | chr3.2:86524161-86524180 | MS.gene014995:intron | 25.0% |
| ! | ATGTTCATATTTGTATGAAC+TGG | - | chr3.2:86523705-86523724 | MS.gene014995:CDS | 25.0% |
| ! | ATTACAAGATACTTCTTTAC+CGG | - | chr3.2:86524578-86524597 | MS.gene014995:intron | 25.0% |
| ! | CTCAAATAAATCAAGTCAAA+CGG | - | chr3.2:86523493-86523512 | MS.gene014995:CDS | 25.0% |
| ! | CTTAAAAATACCTGTATTTG+AGG | + | chr3.2:86523085-86523104 | None:intergenic | 25.0% |
| ! | CTTATACAATAAGCTGAAAA+CGG | - | chr3.2:86523396-86523415 | MS.gene014995:intron | 25.0% |
| ! | GAACTATTTGGATACAATAA+TGG | - | chr3.2:86525087-86525106 | MS.gene014995:CDS | 25.0% |
| ! | GATGTAAAATGATTGTTTCA+TGG | - | chr3.2:86523606-86523625 | MS.gene014995:intron | 25.0% |
| ! | GCTTTACACAACAAAATTAT+CGG | + | chr3.2:86524704-86524723 | None:intergenic | 25.0% |
| ! | TCACTTGTAATTGAATTCTT+TGG | - | chr3.2:86524748-86524767 | MS.gene014995:intron | 25.0% |
| ! | TCTATCCATAGTTTACTATT+TGG | - | chr3.2:86524883-86524902 | MS.gene014995:intron | 25.0% |
| !! | AATTCGTAATGTTGAGATTT+TGG | + | chr3.2:86523026-86523045 | None:intergenic | 25.0% |
| !! | ATTCGTAATGTTGAGATTTT+GGG | + | chr3.2:86523025-86523044 | None:intergenic | 25.0% |
| !! | ATTTTCCATAGAAATGTTTG+AGG | - | chr3.2:86524203-86524222 | MS.gene014995:intron | 25.0% |
| !! | GATTTATTTGAGTTTATCCA+CGG | + | chr3.2:86523485-86523504 | None:intergenic | 25.0% |
| !!! | AGAACTCAATTAGTCTTATT+AGG | + | chr3.2:86524488-86524507 | None:intergenic | 25.0% |
| !!! | CAATTAGTCTTATTAGGTAT+TGG | + | chr3.2:86524482-86524501 | None:intergenic | 25.0% |
| AAACTATATGACATGCACAA+TGG | + | chr3.2:86523994-86524013 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACGGTTTA+TGG | - | chr3.2:86523403-86523422 | MS.gene014995:intron | 30.0% | |
| ACTATCTTTAACGAATATGG+TGG | - | chr3.2:86523516-86523535 | MS.gene014995:CDS | 30.0% | |
| AGGACAAAAATGAAGATGAT+TGG | - | chr3.2:86524555-86524574 | MS.gene014995:intron | 30.0% | |
| ATATGAAGTTTACCTCAAAG+TGG | + | chr3.2:86524406-86524425 | None:intergenic | 30.0% | |
| CAACATAATTCAAGCTTACT+TGG | + | chr3.2:86524640-86524659 | None:intergenic | 30.0% | |
| CCAATTATGGAATCAACATA+TGG | - | chr3.2:86525006-86525025 | MS.gene014995:CDS | 30.0% | |
| CGTTACCAAATAGTAAACTA+TGG | + | chr3.2:86524891-86524910 | None:intergenic | 30.0% | |
| GATACAATAATGGTGAAGAA+TGG | - | chr3.2:86525097-86525116 | MS.gene014995:CDS | 30.0% | |
| TATATTACTAAGACCGTGTT+TGG | - | chr3.2:86523232-86523251 | MS.gene014995:CDS | 30.0% | |
| TCTAACCTCAAACATTTCTA+TGG | + | chr3.2:86524211-86524230 | None:intergenic | 30.0% | |
| ! | ATCTAAGAACTGATTCATCA+AGG | - | chr3.2:86523134-86523153 | MS.gene014995:intron | 30.0% |
| ! | ATGATTTGCAAGACAAGTAT+TGG | + | chr3.2:86524057-86524076 | None:intergenic | 30.0% |
| ! | GACTCAAAAAGCTTTTATTG+AGG | - | chr3.2:86523925-86523944 | MS.gene014995:CDS | 30.0% |
| ! | TCTAAGAACTGATTCATCAA+GGG | - | chr3.2:86523135-86523154 | MS.gene014995:intron | 30.0% |
| !! | ATGTTTGAGGTTAGATTTTG+TGG | - | chr3.2:86524216-86524235 | MS.gene014995:intron | 30.0% |
| !! | CCATATGTTGATTCCATAAT+TGG | + | chr3.2:86525009-86525028 | None:intergenic | 30.0% |
| !! | TGTTTGAGGTTAGATTTTGT+GGG | - | chr3.2:86524217-86524236 | MS.gene014995:intron | 30.0% |
| !!! | AATAAAAGCTTTTTGAGTCG+TGG | + | chr3.2:86523924-86523943 | None:intergenic | 30.0% |
| AAAACACCTGTGAGACTATT+AGG | + | chr3.2:86523459-86523478 | None:intergenic | 35.0% | |
| AAGAACCAGCTTAAAGAAAG+AGG | + | chr3.2:86523054-86523073 | None:intergenic | 35.0% | |
| ATAGCTGTAGCAGAACTATT+TGG | - | chr3.2:86525075-86525094 | MS.gene014995:CDS | 35.0% | |
| ATGTTACTGTTGTCAACCAT+TGG | - | chr3.2:86524787-86524806 | MS.gene014995:CDS | 35.0% | |
| CAAACTGAGATAGTCAACTA+AGG | + | chr3.2:86524433-86524452 | None:intergenic | 35.0% | |
| CAAGAATTACAGTAGTTCCA+GGG | - | chr3.2:86523880-86523899 | MS.gene014995:intron | 35.0% | |
| CAATAATGGTGAAGAATGGA+TGG | - | chr3.2:86525101-86525120 | MS.gene014995:CDS | 35.0% | |
| CGGACTATCTTTAACGAATA+TGG | - | chr3.2:86523513-86523532 | MS.gene014995:CDS | 35.0% | |
| CTTTAACGAATATGGTGGTA+GGG | - | chr3.2:86523521-86523540 | MS.gene014995:CDS | 35.0% | |
| GACTTTCATCAAGCCAATTA+TGG | - | chr3.2:86524993-86525012 | MS.gene014995:CDS | 35.0% | |
| GGTACTACTGCAATACTATT+GGG | + | chr3.2:86524683-86524702 | None:intergenic | 35.0% | |
| GTGTATAGCTTAACTGCATT+GGG | - | chr3.2:86523200-86523219 | MS.gene014995:intron | 35.0% | |
| GTTGGAATATGCTGAATTGT+TGG | - | chr3.2:86524842-86524861 | MS.gene014995:CDS | 35.0% | |
| TCTTTAACGAATATGGTGGT+AGG | - | chr3.2:86523520-86523539 | MS.gene014995:CDS | 35.0% | |
| TGCAGTTAAGCTATACACAA+AGG | + | chr3.2:86523198-86523217 | None:intergenic | 35.0% | |
| TGTGTATAGCTTAACTGCAT+TGG | - | chr3.2:86523199-86523218 | MS.gene014995:intron | 35.0% | |
| TTCTCAAGAAGATATCCAAC+TGG | - | chr3.2:86524324-86524343 | MS.gene014995:intron | 35.0% | |
| TTGGAAACAACCTCAAATAC+AGG | - | chr3.2:86523072-86523091 | MS.gene014995:intron | 35.0% | |
| ! | AGAAAGTACAGTGAGCAAAT+TGG | + | chr3.2:86522886-86522905 | None:intergenic | 35.0% |
| ! | CTTTTATTGAGGAGAAATGC+CGG | - | chr3.2:86523936-86523955 | MS.gene014995:CDS | 35.0% |
| ! | TCTTTCTTTAAGCTGGTTCT+TGG | - | chr3.2:86523053-86523072 | MS.gene014995:CDS | 35.0% |
| !! | AATTCTTTGGTGATGTGTGA+AGG | - | chr3.2:86524761-86524780 | MS.gene014995:intron | 35.0% |
| !! | TAAAGAAGTAGATTTGCTGC+AGG | + | chr3.2:86524614-86524633 | None:intergenic | 35.0% |
| !! | TACGTGCTACTTATACATGT+AGG | - | chr3.2:86524535-86524554 | MS.gene014995:intron | 35.0% |
| !!! | ATTTATTTTGCAGCGAAGAG+TGG | - | chr3.2:86524947-86524966 | MS.gene014995:intron | 35.0% |
| AACAAACAGCTCTTCTTGCA+TGG | - | chr3.2:86524029-86524048 | MS.gene014995:CDS | 40.0% | |
| AACATTTGCCTACCACTTTG+AGG | - | chr3.2:86524391-86524410 | MS.gene014995:intron | 40.0% | |
| AAGGCTTGTAAGAAGAACGA+AGG | + | chr3.2:86522835-86522854 | None:intergenic | 40.0% | |
| ACAAGATACTTCTTTACCGG+AGG | - | chr3.2:86524581-86524600 | MS.gene014995:intron | 40.0% | |
| ACCAGCTTAAAGAAAGAGGT+AGG | + | chr3.2:86523050-86523069 | None:intergenic | 40.0% | |
| ACCTACCTCTTTCTTTAAGC+TGG | - | chr3.2:86523046-86523065 | MS.gene014995:CDS | 40.0% | |
| ACGGTTTATGGACATGTCAT+AGG | - | chr3.2:86523415-86523434 | MS.gene014995:intron | 40.0% | |
| CAATTCAGCATATTCCAACC+TGG | + | chr3.2:86524841-86524860 | None:intergenic | 40.0% | |
| CCAAGAATTACAGTAGTTCC+AGG | - | chr3.2:86523879-86523898 | MS.gene014995:intron | 40.0% | |
| CCTGGAACTACTGTAATTCT+TGG | + | chr3.2:86523882-86523901 | None:intergenic | 40.0% | |
| CGGTACTACTGCAATACTAT+TGG | + | chr3.2:86524684-86524703 | None:intergenic | 40.0% | |
| GAAAGCTGAAGTTCAGAAGA+AGG | + | chr3.2:86522854-86522873 | None:intergenic | 40.0% | |
| GAACTGTATGACCATCTTTC+AGG | + | chr3.2:86523817-86523836 | None:intergenic | 40.0% | |
| GAAGTTTACCTCAAAGTGGT+AGG | + | chr3.2:86524402-86524421 | None:intergenic | 40.0% | |
| GAGAGATCAAACCTGAAAGA+TGG | - | chr3.2:86523803-86523822 | MS.gene014995:intron | 40.0% | |
| GATATCCAACTGGATGAAAG+TGG | - | chr3.2:86524334-86524353 | MS.gene014995:intron | 40.0% | |
| GCAAAGATTCAGCTACCAAA+TGG | - | chr3.2:86525028-86525047 | MS.gene014995:CDS | 40.0% | |
| GGTCATACAGTTCTTGATGT+CGG | - | chr3.2:86523824-86523843 | MS.gene014995:intron | 40.0% | |
| GTTCTTCATATGCTGTGTCA+TGG | + | chr3.2:86524294-86524313 | None:intergenic | 40.0% | |
| GTTTCATGGATGCAGTTTGT+TGG | - | chr3.2:86523620-86523639 | MS.gene014995:intron | 40.0% | |
| ! | AGTGGTAGGCAAATGTTTTG+TGG | + | chr3.2:86524388-86524407 | None:intergenic | 40.0% |
| ! | TCAACCATTGGCTGGTAAAT+GGG | - | chr3.2:86524799-86524818 | MS.gene014995:CDS | 40.0% |
| !! | ACATCAGTACTGACAGCAAT+AGG | + | chr3.2:86523002-86523021 | None:intergenic | 40.0% |
| ACAGTTCTTGATGTCGGATG+CGG | - | chr3.2:86523830-86523849 | MS.gene014995:intron | 45.0% | |
| AGCCTCTTCCAATGTCTTTG+AGG | + | chr3.2:86523756-86523775 | None:intergenic | 45.0% | |
| ATTGCAGATTCCTGTAACCC+TGG | + | chr3.2:86523900-86523919 | None:intergenic | 45.0% | |
| CGAAGAGTGGCTCAAAAGAA+TGG | - | chr3.2:86524960-86524979 | MS.gene014995:intron | 45.0% | |
| CGAATATGGTGGTAGGGTAA+AGG | - | chr3.2:86523527-86523546 | MS.gene014995:CDS | 45.0% | |
| CTCTTCTGCCTCAAAGACAT+TGG | - | chr3.2:86523745-86523764 | MS.gene014995:intron | 45.0% | |
| GTGTGGGATGAATGAATGGT+AGG | - | chr3.2:86523159-86523178 | MS.gene014995:intron | 45.0% | |
| GTTCTGCCTAATAGTCTCAC+AGG | - | chr3.2:86523450-86523469 | MS.gene014995:CDS | 45.0% | |
| GTTTCCCATTTACCAGCCAA+TGG | + | chr3.2:86524806-86524825 | None:intergenic | 45.0% | |
| TACAGTAGTTCCAGGGTTAC+AGG | - | chr3.2:86523887-86523906 | MS.gene014995:intron | 45.0% | |
| TACTGTTGTCAACCATTGGC+TGG | - | chr3.2:86524791-86524810 | MS.gene014995:CDS | 45.0% | |
| TCCAACTGGATGAAAGTGGA+TGG | - | chr3.2:86524338-86524357 | MS.gene014995:intron | 45.0% | |
| TCTCCAGTAGACAGTCCATT+TGG | + | chr3.2:86525046-86525065 | None:intergenic | 45.0% | |
| TGAACCAAGCATCAGCTTCA+CGG | + | chr3.2:86522747-86522766 | None:intergenic | 45.0% | |
| TGCCTCAAAGACATTGGAAG+AGG | - | chr3.2:86523751-86523770 | MS.gene014995:intron | 45.0% | |
| ! | ACTGATTCATCAAGGGTGTG+TGG | - | chr3.2:86523142-86523161 | MS.gene014995:intron | 45.0% |
| ! | CTGATTCATCAAGGGTGTGT+GGG | - | chr3.2:86523143-86523162 | MS.gene014995:intron | 45.0% |
| ! | GTCAACCATTGGCTGGTAAA+TGG | - | chr3.2:86524798-86524817 | MS.gene014995:CDS | 45.0% |
| !! | CTACCAAATGGACTGTCTAC+TGG | - | chr3.2:86525040-86525059 | MS.gene014995:CDS | 45.0% |
| ACACTACGCACAAACCAGGT+TGG | - | chr3.2:86524824-86524843 | MS.gene014995:CDS | 50.0% | |
| ACGTGTGAGTCTCCTGATGA+CGG | + | chr3.2:86522795-86522814 | None:intergenic | 50.0% | |
| GCCATCCACTTTCATCCAGT+TGG | + | chr3.2:86524342-86524361 | None:intergenic | 50.0% | |
| GGAAACACTACGCACAAACC+AGG | - | chr3.2:86524820-86524839 | MS.gene014995:CDS | 50.0% | |
| GGGTGTGTGGGATGAATGAA+TGG | - | chr3.2:86523155-86523174 | MS.gene014995:intron | 50.0% | |
| TCTTGATGTCGGATGCGGTT+GGG | - | chr3.2:86523835-86523854 | MS.gene014995:intron | 50.0% | |
| TTCTTGATGTCGGATGCGGT+TGG | - | chr3.2:86523834-86523853 | MS.gene014995:intron | 50.0% | |
| ! | TTTTCACTGCCCCCTTGTCA+GGG | - | chr3.2:86524104-86524123 | MS.gene014995:CDS | 50.0% |
| ! | TTTTTCACTGCCCCCTTGTC+AGG | - | chr3.2:86524103-86524122 | MS.gene014995:CDS | 50.0% |
| !! | AGCTTCACGGTGGTGTTGTA+AGG | + | chr3.2:86522734-86522753 | None:intergenic | 50.0% |
| !! | CTCACAGGTGTTTTTGTCCG+TGG | - | chr3.2:86523465-86523484 | MS.gene014995:CDS | 50.0% |
| ACCAAGCATCAGCTTCACGG+TGG | + | chr3.2:86522744-86522763 | None:intergenic | 55.0% | |
| ACCACCGTGAAGCTGATGCT+TGG | - | chr3.2:86522740-86522759 | MS.gene014995:CDS | 55.0% | |
| CTTGATGTCGGATGCGGTTG+GGG | - | chr3.2:86523836-86523855 | MS.gene014995:intron | 55.0% | |
| GGAGCTGCAGCTGCAAAATG+TGG | - | chr3.2:86524125-86524144 | MS.gene014995:intron | 55.0% | |
| TGCTGCAGGCATAGTTCCTC+CGG | + | chr3.2:86524600-86524619 | None:intergenic | 55.0% | |
| TTGATGTCGGATGCGGTTGG+GGG | - | chr3.2:86523837-86523856 | MS.gene014995:intron | 55.0% | |
| !! | AGTCTCCTGATGACGGCATC+AGG | + | chr3.2:86522788-86522807 | None:intergenic | 55.0% |
| !! | GTCTCCTGATGACGGCATCA+GGG | + | chr3.2:86522787-86522806 | None:intergenic | 55.0% |
| AGCTGCAGCTCCCTGACAAG+GGG | + | chr3.2:86524117-86524136 | None:intergenic | 60.0% | |
| CAGCTGCAGCTCCCTGACAA+GGG | + | chr3.2:86524118-86524137 | None:intergenic | 60.0% | |
| TGCTCCCTGATGCCGTCATC+AGG | - | chr3.2:86522780-86522799 | MS.gene014995:CDS | 60.0% | |
| GCAGCTGCAGCTCCCTGACA+AGG | + | chr3.2:86524119-86524138 | None:intergenic | 65.0% | |
| GCTGCAGCTCCCTGACAAGG+GGG | + | chr3.2:86524116-86524135 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 86522710 | 86525152 | 86522710 | ID=MS.gene014995 |
| chr3.2 | mRNA | 86522710 | 86525152 | 86522710 | ID=MS.gene014995.t1;Parent=MS.gene014995 |
| chr3.2 | exon | 86524966 | 86525152 | 86524966 | ID=MS.gene014995.t1.exon1;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86524966 | 86525152 | 86524966 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86524769 | 86524877 | 86524769 | ID=MS.gene014995.t1.exon2;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86524769 | 86524877 | 86524769 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86523905 | 86524129 | 86523905 | ID=MS.gene014995.t1.exon3;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86523905 | 86524129 | 86523905 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86523638 | 86523737 | 86523638 | ID=MS.gene014995.t1.exon4;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86523638 | 86523737 | 86523638 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86523450 | 86523560 | 86523450 | ID=MS.gene014995.t1.exon5;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86523450 | 86523560 | 86523450 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86523222 | 86523305 | 86523222 | ID=MS.gene014995.t1.exon6;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86523222 | 86523305 | 86523222 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86523021 | 86523079 | 86523021 | ID=MS.gene014995.t1.exon7;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86523021 | 86523079 | 86523021 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| chr3.2 | exon | 86522710 | 86522902 | 86522710 | ID=MS.gene014995.t1.exon8;Parent=MS.gene014995.t1 |
| chr3.2 | CDS | 86522710 | 86522902 | 86522710 | ID=cds.MS.gene014995.t1;Parent=MS.gene014995.t1 |
| Gene Sequence |
| Protein sequence |
