Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37405.t1 | XP_003603178.2 | 97.2 | 355 | 10 | 0 | 1 | 355 | 4 | 358 | 2.50E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37405.t1 | Q5C9L6 | 52.0 | 352 | 165 | 2 | 8 | 355 | 10 | 361 | 2.6e-104 | 380.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37405.t1 | I3S3W0 | 97.2 | 355 | 10 | 0 | 1 | 355 | 4 | 358 | 1.8e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene37405 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene37405 | 0.817828 | 2.69E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene37405 | 0.824725 | 6.91E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene37405 | 0.805862 | 1.09E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene37405 | 0.847357 | 1.22E-59 | -1.69E-46 |
| MS.gene051662 | MS.gene37405 | 0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene37405 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene37405 | 0.807653 | 4.55E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene37405 | 0.830156 | 3.44E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene37405 | 0.819287 | 1.26E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene37405 | 0.848157 | 7.33E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene37405 | 0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene37405 | 0.824795 | 6.65E-54 | -1.69E-46 |
| MS.gene057245 | MS.gene37405 | 0.80878 | 2.62E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene37405 | 0.816748 | 4.71E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene37405 | 0.807216 | 5.63E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene37405 | 0.822906 | 1.84E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene37405 | 0.852754 | 3.75E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene37405 | 0.833629 | 4.78E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014995 | MS.gene37405 | PPI |
| MS.gene37405 | MS.gene066522 | PPI |
| MS.gene37405 | MS.gene32786 | PPI |
| MS.gene37405 | MS.gene071549 | PPI |
| MS.gene37405 | MS.gene071552 | PPI |
| MS.gene37405 | MS.gene014995 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37405.t1 | MTR_3g104740 | 97.183 | 355 | 10 | 0 | 1 | 355 | 4 | 358 | 0.0 | 723 |
| MS.gene37405.t1 | MTR_1g073700 | 29.778 | 225 | 151 | 5 | 78 | 297 | 576 | 798 | 3.18e-22 | 98.6 |
| MS.gene37405.t1 | MTR_1g044520 | 24.893 | 233 | 170 | 4 | 78 | 306 | 540 | 771 | 7.20e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37405.t1 | AT4G33110 | 71.549 | 355 | 101 | 0 | 1 | 355 | 1 | 355 | 0.0 | 562 |
| MS.gene37405.t1 | AT4G33110 | 71.549 | 355 | 101 | 0 | 1 | 355 | 1 | 355 | 0.0 | 562 |
| MS.gene37405.t1 | AT4G33120 | 69.014 | 355 | 110 | 0 | 1 | 355 | 1 | 355 | 0.0 | 542 |
| MS.gene37405.t1 | AT3G23510 | 26.772 | 254 | 176 | 6 | 78 | 326 | 577 | 825 | 7.41e-20 | 91.7 |
| MS.gene37405.t1 | AT3G23480 | 31.053 | 190 | 125 | 5 | 78 | 264 | 168 | 354 | 9.35e-20 | 90.5 |
| MS.gene37405.t1 | AT3G23530 | 26.378 | 254 | 177 | 6 | 78 | 326 | 577 | 825 | 1.51e-19 | 90.5 |
| MS.gene37405.t1 | AT3G23470 | 28.571 | 189 | 132 | 3 | 78 | 264 | 196 | 383 | 2.78e-19 | 89.4 |
| MS.gene37405.t1 | AT3G23470 | 28.571 | 189 | 132 | 3 | 78 | 264 | 196 | 383 | 2.78e-19 | 89.4 |
| MS.gene37405.t1 | AT3G23470 | 28.571 | 189 | 132 | 3 | 78 | 264 | 169 | 356 | 2.88e-19 | 89.0 |
| MS.gene37405.t1 | AT3G23480 | 24.906 | 265 | 186 | 9 | 68 | 326 | 137 | 394 | 3.41e-14 | 73.9 |
| MS.gene37405.t1 | AT3G23480 | 24.906 | 265 | 186 | 9 | 68 | 326 | 100 | 357 | 3.74e-14 | 73.6 |
Find 67 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGTTGATTCCATAAT+TGG | 0.122160 | 3.4:+91722695 | None:intergenic |
| AATTCGTAATGTTGAGATTT+TGG | 0.142343 | 3.4:+91724678 | None:intergenic |
| GAACTGTATGACCATCTTTC+AGG | 0.193403 | 3.4:+91723887 | None:intergenic |
| GACTTTCATCAAGCCAATTA+TGG | 0.256433 | 3.4:-91722708 | MS.gene37405:CDS |
| TCTTTCTTTAAGCTGGTTCT+TGG | 0.257853 | 3.4:-91724648 | MS.gene37405:CDS |
| ATAGCTGTAGCAGAACTATT+TGG | 0.260405 | 3.4:-91722626 | MS.gene37405:CDS |
| GTCAACCATTGGCTGGTAAA+TGG | 0.264020 | 3.4:-91722903 | MS.gene37405:CDS |
| TCTAACCTCAAACATTTCTA+TGG | 0.304284 | 3.4:+91723493 | None:intergenic |
| TACAGTAGTTCCAGGGTTAC+AGG | 0.312484 | 3.4:-91723814 | MS.gene37405:CDS |
| CCTGGAACTACTGTAATTCT+TGG | 0.323390 | 3.4:+91723822 | None:intergenic |
| ATTACAAGATACTTCTTTAC+CGG | 0.330934 | 3.4:-91723123 | MS.gene37405:CDS |
| AGAAATGATGAACGAATAAA+AGG | 0.335415 | 3.4:+91723340 | None:intergenic |
| CTTGATGTCGGATGCGGTTG+GGG | 0.363488 | 3.4:-91723865 | MS.gene37405:CDS |
| TCTTGATGTCGGATGCGGTT+GGG | 0.364766 | 3.4:-91723866 | MS.gene37405:CDS |
| AGTCTCCTGATGACGGCATC+AGG | 0.366796 | 3.4:+91724916 | None:intergenic |
| CCAAGAATTACAGTAGTTCC+AGG | 0.371781 | 3.4:-91723822 | MS.gene37405:CDS |
| TCAACCATTGGCTGGTAAAT+GGG | 0.399932 | 3.4:-91722902 | MS.gene37405:CDS |
| AGAAAGTACAGTGAGCAAAT+TGG | 0.401458 | 3.4:+91724818 | None:intergenic |
| ACCTACCTCTTTCTTTAAGC+TGG | 0.401709 | 3.4:-91724655 | MS.gene37405:CDS |
| AGCCTCTTCCAATGTCTTTG+AGG | 0.408387 | 3.4:+91723948 | None:intergenic |
| TGCTCCCTGATGCCGTCATC+AGG | 0.412465 | 3.4:-91724921 | MS.gene37405:CDS |
| GAACTATTTGGATACAATAA+TGG | 0.412686 | 3.4:-91722614 | MS.gene37405:CDS |
| ACATCAGTACTGACAGCAAT+AGG | 0.445899 | 3.4:+91724702 | None:intergenic |
| TTCTTGATGTCGGATGCGGT+TGG | 0.446691 | 3.4:-91723867 | MS.gene37405:CDS |
| CTACCAAATGGACTGTCTAC+TGG | 0.453211 | 3.4:-91722661 | MS.gene37405:CDS |
| AGACATTAGTACATTTGAAA+TGG | 0.457001 | 3.4:-91723540 | MS.gene37405:CDS |
| CCAATTATGGAATCAACATA+TGG | 0.460490 | 3.4:-91722695 | MS.gene37405:CDS |
| AGCTTCACGGTGGTGTTGTA+AGG | 0.461791 | 3.4:+91724970 | None:intergenic |
| ATTGCAGATTCCTGTAACCC+TGG | 0.462607 | 3.4:+91723804 | None:intergenic |
| CGAAGAGTGGCTCAAAAGAA+TGG | 0.463992 | 3.4:-91722741 | MS.gene37405:CDS |
| GCCATCCACTTTCATCCAGT+TGG | 0.469157 | 3.4:+91723362 | None:intergenic |
| CTCTTCTGCCTCAAAGACAT+TGG | 0.471861 | 3.4:-91723956 | MS.gene37405:CDS |
| TGCTGCAGGCATAGTTCCTC+CGG | 0.476336 | 3.4:+91723104 | None:intergenic |
| AGCATTTGCCTACCACTTTG+AGG | 0.477976 | 3.4:-91723310 | MS.gene37405:intron |
| TTCTCAAGAAGATATCCAAC+TGG | 0.482343 | 3.4:-91723377 | MS.gene37405:CDS |
| AAGAACCAGCTTAAAGAAAG+AGG | 0.482405 | 3.4:+91724650 | None:intergenic |
| GCAAAGATTCAGCTACCAAA+TGG | 0.488606 | 3.4:-91722673 | MS.gene37405:CDS |
| GAAAGCTGAAGTTCAGAAGA+AGG | 0.489672 | 3.4:+91724850 | None:intergenic |
| TCTCCAGTAGACAGTCCATT+TGG | 0.500310 | 3.4:+91722658 | None:intergenic |
| TTGGAAACAACCTCAAATAC+AGG | 0.508399 | 3.4:-91724629 | MS.gene37405:intron |
| ACAGTTCTTGATGTCGGATG+CGG | 0.517068 | 3.4:-91723871 | MS.gene37405:CDS |
| GATACAATAATGGTGAAGAA+TGG | 0.527408 | 3.4:-91722604 | MS.gene37405:CDS |
| ACCACCGTGAAGCTGATGCT+TGG | 0.540117 | 3.4:-91724961 | MS.gene37405:CDS |
| TGCCTCAAAGACATTGGAAG+AGG | 0.542100 | 3.4:-91723950 | MS.gene37405:CDS |
| TGAACCAAGCATCAGCTTCA+CGG | 0.542958 | 3.4:+91724957 | None:intergenic |
| GTTTCCCATTTACCAGCCAA+TGG | 0.543039 | 3.4:+91722898 | None:intergenic |
| GATATCCAACTGGATGAAAG+TGG | 0.544699 | 3.4:-91723367 | MS.gene37405:CDS |
| AGTGGTAGGCAAATGCTTTG+TGG | 0.556397 | 3.4:+91723316 | None:intergenic |
| CAATAATGGTGAAGAATGGA+TGG | 0.562198 | 3.4:-91722600 | MS.gene37405:CDS |
| ATGTTACTGTTGTCAACCAT+TGG | 0.570038 | 3.4:-91722914 | MS.gene37405:CDS |
| TAAAGAAGTAGATTTGCTGC+AGG | 0.572831 | 3.4:+91723090 | None:intergenic |
| TACTGTTGTCAACCATTGGC+TGG | 0.579302 | 3.4:-91722910 | MS.gene37405:CDS |
| CAAGAATTACAGTAGTTCCA+GGG | 0.581678 | 3.4:-91723821 | MS.gene37405:CDS |
| GAAGTTTACCTCAAAGTGGT+AGG | 0.587833 | 3.4:+91723302 | None:intergenic |
| GAGAGATCAAACCTGAAAGA+TGG | 0.590354 | 3.4:-91723898 | MS.gene37405:CDS |
| GGTCATACAGTTCTTGATGT+CGG | 0.592044 | 3.4:-91723877 | MS.gene37405:CDS |
| GGAAACACTACGCACAAACC+AGG | 0.597454 | 3.4:-91722881 | MS.gene37405:intron |
| GGAGCTGCAGCTGCAAAATG+TGG | 0.607827 | 3.4:-91723576 | MS.gene37405:CDS |
| ACCAGCTTAAAGAAAGAGGT+AGG | 0.613974 | 3.4:+91724654 | None:intergenic |
| ACGTGTGAGTCTCCTGATGA+CGG | 0.614974 | 3.4:+91724909 | None:intergenic |
| TCCAACTGGATGAAAGTGGA+TGG | 0.617956 | 3.4:-91723363 | MS.gene37405:CDS |
| TTGATGTCGGATGCGGTTGG+GGG | 0.625116 | 3.4:-91723864 | MS.gene37405:CDS |
| ATATGAAGTTTACCTCAAAG+TGG | 0.632893 | 3.4:+91723298 | None:intergenic |
| GTCTCCTGATGACGGCATCA+GGG | 0.634408 | 3.4:+91724917 | None:intergenic |
| ACAAGATACTTCTTTACCGG+AGG | 0.634907 | 3.4:-91723120 | MS.gene37405:CDS |
| AAGGCTTGTAAGAAGAACGA+AGG | 0.696633 | 3.4:+91724869 | None:intergenic |
| ACCAAGCATCAGCTTCACGG+TGG | 0.763639 | 3.4:+91724960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCTATATATAACAAAAT+CGG | + | chr3.4:91722770-91722789 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCTATACAA+GGG | - | chr3.4:91723170-91723189 | MS.gene37405:intron | 15.0% |
| !! | TACAATATCAAGAAATATAC+CGG | + | chr3.4:91723819-91723838 | None:intergenic | 20.0% |
| !! | TGAACATTACATAAATCATA+AGG | + | chr3.4:91723553-91723572 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATCCAAACA+CGG | + | chr3.4:91723109-91723128 | None:intergenic | 20.0% |
| !!! | AATCATTTTACATCGTATTA+AGG | + | chr3.4:91723461-91723480 | None:intergenic | 20.0% |
| !!! | GTATAAGTTATTTCTATACA+AGG | - | chr3.4:91723169-91723188 | MS.gene37405:intron | 20.0% |
| ! | AGAAATGATGAACGAATAAA+AGG | + | chr3.4:91724225-91724244 | None:intergenic | 25.0% |
| ! | AGAATCATGACGAAATATAA+AGG | + | chr3.4:91724587-91724606 | None:intergenic | 25.0% |
| ! | AGACATTAGTACATTTGAAA+TGG | - | chr3.4:91724022-91724041 | MS.gene37405:intron | 25.0% |
| ! | AGTAAACTATGGATAGAATA+TGG | + | chr3.4:91724741-91724760 | None:intergenic | 25.0% |
| ! | ATGTTCATATTTGTATGAAC+TGG | - | chr3.4:91723566-91723585 | MS.gene37405:CDS | 25.0% |
| ! | ATTACAAGATACTTCTTTAC+CGG | - | chr3.4:91724439-91724458 | MS.gene37405:intron | 25.0% |
| ! | CTCAAATAAATCAAGTCAAA+CGG | - | chr3.4:91723354-91723373 | MS.gene37405:CDS | 25.0% |
| ! | CTTAAAAATACCTGTATTTG+AGG | + | chr3.4:91722946-91722965 | None:intergenic | 25.0% |
| ! | CTTATACAATAAGCTGAAAA+CGG | - | chr3.4:91723257-91723276 | MS.gene37405:intron | 25.0% |
| ! | GAACTATTTGGATACAATAA+TGG | - | chr3.4:91724948-91724967 | MS.gene37405:CDS | 25.0% |
| ! | GATGTAAAATGATTGTTTCA+TGG | - | chr3.4:91723467-91723486 | MS.gene37405:intron | 25.0% |
| ! | GCTTTACACAACAAAATTAT+CGG | + | chr3.4:91724565-91724584 | None:intergenic | 25.0% |
| ! | TCACTTGTAATTGAATTCTT+TGG | - | chr3.4:91724609-91724628 | MS.gene37405:intron | 25.0% |
| ! | TCTATCCATAGTTTACTATT+TGG | - | chr3.4:91724744-91724763 | MS.gene37405:intron | 25.0% |
| !! | AATTCGTAATGTTGAGATTT+TGG | + | chr3.4:91722887-91722906 | None:intergenic | 25.0% |
| !! | ATTCGTAATGTTGAGATTTT+GGG | + | chr3.4:91722886-91722905 | None:intergenic | 25.0% |
| !! | ATTTTCCATAGAAATGTTTG+AGG | - | chr3.4:91724064-91724083 | MS.gene37405:intron | 25.0% |
| !! | GATTTATTTGAGTTTATCCA+CGG | + | chr3.4:91723346-91723365 | None:intergenic | 25.0% |
| !!! | AGAACTCAATTAGTCTTATT+AGG | + | chr3.4:91724349-91724368 | None:intergenic | 25.0% |
| !!! | CAATTAGTCTTATTAGGTAT+TGG | + | chr3.4:91724343-91724362 | None:intergenic | 25.0% |
| AAACTATATGACATGCACAA+TGG | + | chr3.4:91723855-91723874 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACGGTTTA+TGG | - | chr3.4:91723264-91723283 | MS.gene37405:intron | 30.0% | |
| ACTATCTTTAACGAATATGG+TGG | - | chr3.4:91723377-91723396 | MS.gene37405:CDS | 30.0% | |
| AGGACAAAAATGAAGATGAT+TGG | - | chr3.4:91724416-91724435 | MS.gene37405:intron | 30.0% | |
| ATATGAAGTTTACCTCAAAG+TGG | + | chr3.4:91724267-91724286 | None:intergenic | 30.0% | |
| CAACATAATTCAAGCTTACT+TGG | + | chr3.4:91724501-91724520 | None:intergenic | 30.0% | |
| CCAATTATGGAATCAACATA+TGG | - | chr3.4:91724867-91724886 | MS.gene37405:CDS | 30.0% | |
| CGTTACCAAATAGTAAACTA+TGG | + | chr3.4:91724752-91724771 | None:intergenic | 30.0% | |
| GATACAATAATGGTGAAGAA+TGG | - | chr3.4:91724958-91724977 | MS.gene37405:CDS | 30.0% | |
| TATATTACTAAGACCGTGTT+TGG | - | chr3.4:91723093-91723112 | MS.gene37405:CDS | 30.0% | |
| TCTAACCTCAAACATTTCTA+TGG | + | chr3.4:91724072-91724091 | None:intergenic | 30.0% | |
| ! | ATCTAAGAACTGATTCATCA+AGG | - | chr3.4:91722995-91723014 | MS.gene37405:intron | 30.0% |
| ! | ATGATTTGCAAGACAAGTAT+TGG | + | chr3.4:91723918-91723937 | None:intergenic | 30.0% |
| ! | GACTCAAAAAGCTTTTATTG+AGG | - | chr3.4:91723786-91723805 | MS.gene37405:CDS | 30.0% |
| ! | TCTAAGAACTGATTCATCAA+GGG | - | chr3.4:91722996-91723015 | MS.gene37405:intron | 30.0% |
| !! | ATGTTTGAGGTTAGATTTTG+TGG | - | chr3.4:91724077-91724096 | MS.gene37405:intron | 30.0% |
| !! | CCATATGTTGATTCCATAAT+TGG | + | chr3.4:91724870-91724889 | None:intergenic | 30.0% |
| !! | TGTTTGAGGTTAGATTTTGT+GGG | - | chr3.4:91724078-91724097 | MS.gene37405:intron | 30.0% |
| !!! | AATAAAAGCTTTTTGAGTCG+TGG | + | chr3.4:91723785-91723804 | None:intergenic | 30.0% |
| AAAACACCTGTGAGACTATT+AGG | + | chr3.4:91723320-91723339 | None:intergenic | 35.0% | |
| AAGAACCAGCTTAAAGAAAG+AGG | + | chr3.4:91722915-91722934 | None:intergenic | 35.0% | |
| ATAGCTGTAGCAGAACTATT+TGG | - | chr3.4:91724936-91724955 | MS.gene37405:CDS | 35.0% | |
| ATGTTACTGTTGTCAACCAT+TGG | - | chr3.4:91724648-91724667 | MS.gene37405:CDS | 35.0% | |
| CAAACTGAGATAGTCAACTA+AGG | + | chr3.4:91724294-91724313 | None:intergenic | 35.0% | |
| CAAGAATTACAGTAGTTCCA+GGG | - | chr3.4:91723741-91723760 | MS.gene37405:intron | 35.0% | |
| CAATAATGGTGAAGAATGGA+TGG | - | chr3.4:91724962-91724981 | MS.gene37405:CDS | 35.0% | |
| CGGACTATCTTTAACGAATA+TGG | - | chr3.4:91723374-91723393 | MS.gene37405:CDS | 35.0% | |
| CTTTAACGAATATGGTGGTA+GGG | - | chr3.4:91723382-91723401 | MS.gene37405:CDS | 35.0% | |
| GACTTTCATCAAGCCAATTA+TGG | - | chr3.4:91724854-91724873 | MS.gene37405:CDS | 35.0% | |
| GGTACTACTGCAATACTATT+GGG | + | chr3.4:91724544-91724563 | None:intergenic | 35.0% | |
| GTGTATAGCTTAACTGCATT+GGG | - | chr3.4:91723061-91723080 | MS.gene37405:intron | 35.0% | |
| GTTGGAATATGCTGAATTGT+TGG | - | chr3.4:91724703-91724722 | MS.gene37405:CDS | 35.0% | |
| TCTTTAACGAATATGGTGGT+AGG | - | chr3.4:91723381-91723400 | MS.gene37405:CDS | 35.0% | |
| TGCAGTTAAGCTATACACAA+AGG | + | chr3.4:91723059-91723078 | None:intergenic | 35.0% | |
| TGTGTATAGCTTAACTGCAT+TGG | - | chr3.4:91723060-91723079 | MS.gene37405:intron | 35.0% | |
| TTCTCAAGAAGATATCCAAC+TGG | - | chr3.4:91724185-91724204 | MS.gene37405:intron | 35.0% | |
| TTGGAAACAACCTCAAATAC+AGG | - | chr3.4:91722933-91722952 | MS.gene37405:intron | 35.0% | |
| ! | AGAAAGTACAGTGAGCAAAT+TGG | + | chr3.4:91722747-91722766 | None:intergenic | 35.0% |
| ! | CTTTTATTGAGGAGAAATGC+CGG | - | chr3.4:91723797-91723816 | MS.gene37405:CDS | 35.0% |
| ! | TCTTTCTTTAAGCTGGTTCT+TGG | - | chr3.4:91722914-91722933 | MS.gene37405:CDS | 35.0% |
| !! | AATTCTTTGGTGATGTGTGA+AGG | - | chr3.4:91724622-91724641 | MS.gene37405:intron | 35.0% |
| !! | TAAAGAAGTAGATTTGCTGC+AGG | + | chr3.4:91724475-91724494 | None:intergenic | 35.0% |
| !! | TACGTGCTACTTATACATGT+AGG | - | chr3.4:91724396-91724415 | MS.gene37405:intron | 35.0% |
| !!! | ATTTATTTTGCAGCGAAGAG+TGG | - | chr3.4:91724808-91724827 | MS.gene37405:intron | 35.0% |
| AACAAACAGCTCTTCTTGCA+TGG | - | chr3.4:91723890-91723909 | MS.gene37405:CDS | 40.0% | |
| AAGGCTTGTAAGAAGAACGA+AGG | + | chr3.4:91722696-91722715 | None:intergenic | 40.0% | |
| ACAAGATACTTCTTTACCGG+AGG | - | chr3.4:91724442-91724461 | MS.gene37405:intron | 40.0% | |
| ACCAGCTTAAAGAAAGAGGT+AGG | + | chr3.4:91722911-91722930 | None:intergenic | 40.0% | |
| ACCTACCTCTTTCTTTAAGC+TGG | - | chr3.4:91722907-91722926 | MS.gene37405:CDS | 40.0% | |
| ACGGTTTATGGACATGTCAT+AGG | - | chr3.4:91723276-91723295 | MS.gene37405:intron | 40.0% | |
| CAATTCAGCATATTCCAACC+TGG | + | chr3.4:91724702-91724721 | None:intergenic | 40.0% | |
| CCAAGAATTACAGTAGTTCC+AGG | - | chr3.4:91723740-91723759 | MS.gene37405:intron | 40.0% | |
| CCTGGAACTACTGTAATTCT+TGG | + | chr3.4:91723743-91723762 | None:intergenic | 40.0% | |
| CGGTACTACTGCAATACTAT+TGG | + | chr3.4:91724545-91724564 | None:intergenic | 40.0% | |
| GAAAGCTGAAGTTCAGAAGA+AGG | + | chr3.4:91722715-91722734 | None:intergenic | 40.0% | |
| GAACTGTATGACCATCTTTC+AGG | + | chr3.4:91723678-91723697 | None:intergenic | 40.0% | |
| GAAGTTTACCTCAAAGTGGT+AGG | + | chr3.4:91724263-91724282 | None:intergenic | 40.0% | |
| GAGAGATCAAACCTGAAAGA+TGG | - | chr3.4:91723664-91723683 | MS.gene37405:intron | 40.0% | |
| GATATCCAACTGGATGAAAG+TGG | - | chr3.4:91724195-91724214 | MS.gene37405:intron | 40.0% | |
| GCAAAGATTCAGCTACCAAA+TGG | - | chr3.4:91724889-91724908 | MS.gene37405:CDS | 40.0% | |
| GGTCATACAGTTCTTGATGT+CGG | - | chr3.4:91723685-91723704 | MS.gene37405:intron | 40.0% | |
| GTTCTTCATATGCTGTGTCA+TGG | + | chr3.4:91724155-91724174 | None:intergenic | 40.0% | |
| GTTTCATGGATGCAGTTTGT+TGG | - | chr3.4:91723481-91723500 | MS.gene37405:intron | 40.0% | |
| ! | TCAACCATTGGCTGGTAAAT+GGG | - | chr3.4:91724660-91724679 | MS.gene37405:CDS | 40.0% |
| !! | ACATCAGTACTGACAGCAAT+AGG | + | chr3.4:91722863-91722882 | None:intergenic | 40.0% |
| ACAGTTCTTGATGTCGGATG+CGG | - | chr3.4:91723691-91723710 | MS.gene37405:intron | 45.0% | |
| AGCATTTGCCTACCACTTTG+AGG | - | chr3.4:91724252-91724271 | MS.gene37405:intron | 45.0% | |
| AGCCTCTTCCAATGTCTTTG+AGG | + | chr3.4:91723617-91723636 | None:intergenic | 45.0% | |
| AGTGGTAGGCAAATGCTTTG+TGG | + | chr3.4:91724249-91724268 | None:intergenic | 45.0% | |
| ATTGCAGATTCCTGTAACCC+TGG | + | chr3.4:91723761-91723780 | None:intergenic | 45.0% | |
| CGAAGAGTGGCTCAAAAGAA+TGG | - | chr3.4:91724821-91724840 | MS.gene37405:intron | 45.0% | |
| CGAATATGGTGGTAGGGTAA+AGG | - | chr3.4:91723388-91723407 | MS.gene37405:CDS | 45.0% | |
| CTCTTCTGCCTCAAAGACAT+TGG | - | chr3.4:91723606-91723625 | MS.gene37405:intron | 45.0% | |
| GTGTGGGATGAATGAATGGT+AGG | - | chr3.4:91723020-91723039 | MS.gene37405:intron | 45.0% | |
| GTTCTGCCTAATAGTCTCAC+AGG | - | chr3.4:91723311-91723330 | MS.gene37405:CDS | 45.0% | |
| GTTTCCCATTTACCAGCCAA+TGG | + | chr3.4:91724667-91724686 | None:intergenic | 45.0% | |
| TACAGTAGTTCCAGGGTTAC+AGG | - | chr3.4:91723748-91723767 | MS.gene37405:intron | 45.0% | |
| TACTGTTGTCAACCATTGGC+TGG | - | chr3.4:91724652-91724671 | MS.gene37405:CDS | 45.0% | |
| TCCAACTGGATGAAAGTGGA+TGG | - | chr3.4:91724199-91724218 | MS.gene37405:intron | 45.0% | |
| TCTCCAGTAGACAGTCCATT+TGG | + | chr3.4:91724907-91724926 | None:intergenic | 45.0% | |
| TGAACCAAGCATCAGCTTCA+CGG | + | chr3.4:91722608-91722627 | None:intergenic | 45.0% | |
| TGCCTCAAAGACATTGGAAG+AGG | - | chr3.4:91723612-91723631 | MS.gene37405:intron | 45.0% | |
| ! | ACTGATTCATCAAGGGTGTG+TGG | - | chr3.4:91723003-91723022 | MS.gene37405:intron | 45.0% |
| ! | CTGATTCATCAAGGGTGTGT+GGG | - | chr3.4:91723004-91723023 | MS.gene37405:intron | 45.0% |
| ! | GTCAACCATTGGCTGGTAAA+TGG | - | chr3.4:91724659-91724678 | MS.gene37405:CDS | 45.0% |
| !! | CTACCAAATGGACTGTCTAC+TGG | - | chr3.4:91724901-91724920 | MS.gene37405:CDS | 45.0% |
| ACACTACGCACAAACCAGGT+TGG | - | chr3.4:91724685-91724704 | MS.gene37405:CDS | 50.0% | |
| ACGTGTGAGTCTCCTGATGA+CGG | + | chr3.4:91722656-91722675 | None:intergenic | 50.0% | |
| GCCATCCACTTTCATCCAGT+TGG | + | chr3.4:91724203-91724222 | None:intergenic | 50.0% | |
| GGAAACACTACGCACAAACC+AGG | - | chr3.4:91724681-91724700 | MS.gene37405:CDS | 50.0% | |
| GGGTGTGTGGGATGAATGAA+TGG | - | chr3.4:91723016-91723035 | MS.gene37405:intron | 50.0% | |
| TCTTGATGTCGGATGCGGTT+GGG | - | chr3.4:91723696-91723715 | MS.gene37405:intron | 50.0% | |
| TTCTTGATGTCGGATGCGGT+TGG | - | chr3.4:91723695-91723714 | MS.gene37405:intron | 50.0% | |
| ! | TTTTCACTGCCCCCTTGTCA+GGG | - | chr3.4:91723965-91723984 | MS.gene37405:CDS | 50.0% |
| ! | TTTTTCACTGCCCCCTTGTC+AGG | - | chr3.4:91723964-91723983 | MS.gene37405:CDS | 50.0% |
| !! | AGCTTCACGGTGGTGTTGTA+AGG | + | chr3.4:91722595-91722614 | None:intergenic | 50.0% |
| !! | CTCACAGGTGTTTTTGTCCG+TGG | - | chr3.4:91723326-91723345 | MS.gene37405:CDS | 50.0% |
| ACCAAGCATCAGCTTCACGG+TGG | + | chr3.4:91722605-91722624 | None:intergenic | 55.0% | |
| ACCACCGTGAAGCTGATGCT+TGG | - | chr3.4:91722601-91722620 | MS.gene37405:CDS | 55.0% | |
| CTTGATGTCGGATGCGGTTG+GGG | - | chr3.4:91723697-91723716 | MS.gene37405:intron | 55.0% | |
| GGAGCTGCAGCTGCAAAATG+TGG | - | chr3.4:91723986-91724005 | MS.gene37405:intron | 55.0% | |
| TGCTGCAGGCATAGTTCCTC+CGG | + | chr3.4:91724461-91724480 | None:intergenic | 55.0% | |
| TTGATGTCGGATGCGGTTGG+GGG | - | chr3.4:91723698-91723717 | MS.gene37405:intron | 55.0% | |
| !! | AGTCTCCTGATGACGGCATC+AGG | + | chr3.4:91722649-91722668 | None:intergenic | 55.0% |
| !! | GTCTCCTGATGACGGCATCA+GGG | + | chr3.4:91722648-91722667 | None:intergenic | 55.0% |
| AGCTGCAGCTCCCTGACAAG+GGG | + | chr3.4:91723978-91723997 | None:intergenic | 60.0% | |
| CAGCTGCAGCTCCCTGACAA+GGG | + | chr3.4:91723979-91723998 | None:intergenic | 60.0% | |
| TGCTCCCTGATGCCGTCATC+AGG | - | chr3.4:91722641-91722660 | MS.gene37405:CDS | 60.0% | |
| GCAGCTGCAGCTCCCTGACA+AGG | + | chr3.4:91723980-91723999 | None:intergenic | 65.0% | |
| GCTGCAGCTCCCTGACAAGG+GGG | + | chr3.4:91723977-91723996 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91722571 | 91725013 | 91722571 | ID=MS.gene37405 |
| chr3.4 | mRNA | 91722571 | 91725013 | 91722571 | ID=MS.gene37405.t1;Parent=MS.gene37405 |
| chr3.4 | exon | 91724827 | 91725013 | 91724827 | ID=MS.gene37405.t1.exon1;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91724827 | 91725013 | 91724827 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91724630 | 91724738 | 91724630 | ID=MS.gene37405.t1.exon2;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91724630 | 91724738 | 91724630 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91723766 | 91723990 | 91723766 | ID=MS.gene37405.t1.exon3;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91723766 | 91723990 | 91723766 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91723499 | 91723598 | 91723499 | ID=MS.gene37405.t1.exon4;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91723499 | 91723598 | 91723499 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91723311 | 91723421 | 91723311 | ID=MS.gene37405.t1.exon5;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91723311 | 91723421 | 91723311 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91723083 | 91723166 | 91723083 | ID=MS.gene37405.t1.exon6;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91723083 | 91723166 | 91723083 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91722882 | 91722940 | 91722882 | ID=MS.gene37405.t1.exon7;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91722882 | 91722940 | 91722882 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| chr3.4 | exon | 91722571 | 91722763 | 91722571 | ID=MS.gene37405.t1.exon8;Parent=MS.gene37405.t1 |
| chr3.4 | CDS | 91722571 | 91722763 | 91722571 | ID=cds.MS.gene37405.t1;Parent=MS.gene37405.t1 |
| Gene Sequence |
| Protein sequence |
