Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071552.t1 | XP_003603178.2 | 96.9 | 291 | 9 | 0 | 1 | 291 | 4 | 294 | 1.40E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071552.t1 | Q5C9L6 | 51.7 | 286 | 136 | 1 | 8 | 291 | 10 | 295 | 4.1e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071552.t1 | I3S3W0 | 96.9 | 291 | 9 | 0 | 1 | 291 | 4 | 294 | 1.0e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene071552 | 0.809815 | 1.57E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene071552 | 0.828878 | 7.04E-55 | -1.69E-46 |
| MS.gene050558 | MS.gene071552 | 0.817451 | 3.28E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene071552 | 0.802418 | 5.66E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene071552 | 0.829301 | 5.56E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene071552 | 0.804167 | 2.46E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene071552 | 0.820546 | 6.48E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene071552 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene071552 | 0.804119 | 2.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071549 | MS.gene071552 | PPI |
| MS.gene014995 | MS.gene071552 | PPI |
| MS.gene071552 | MS.gene071549 | PPI |
| MS.gene066522 | MS.gene071552 | PPI |
| MS.gene37405 | MS.gene071552 | PPI |
| MS.gene32786 | MS.gene071552 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071552.t1 | MTR_3g104740 | 96.907 | 291 | 9 | 0 | 1 | 291 | 4 | 294 | 0.0 | 595 |
| MS.gene071552.t1 | MTR_1g073700 | 29.680 | 219 | 147 | 5 | 78 | 291 | 576 | 792 | 1.33e-21 | 95.1 |
| MS.gene071552.t1 | MTR_1g044520 | 25.789 | 190 | 136 | 4 | 78 | 264 | 540 | 727 | 1.56e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071552.t1 | AT4G33110 | 70.447 | 291 | 86 | 0 | 1 | 291 | 1 | 291 | 3.32e-163 | 457 |
| MS.gene071552.t1 | AT4G33110 | 70.447 | 291 | 86 | 0 | 1 | 291 | 1 | 291 | 3.32e-163 | 457 |
| MS.gene071552.t1 | AT4G33120 | 68.729 | 291 | 91 | 0 | 1 | 291 | 1 | 291 | 7.63e-158 | 444 |
| MS.gene071552.t1 | AT3G23480 | 31.579 | 190 | 124 | 5 | 78 | 264 | 168 | 354 | 5.44e-21 | 92.8 |
| MS.gene071552.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 4.76e-20 | 90.1 |
| MS.gene071552.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 4.76e-20 | 90.1 |
| MS.gene071552.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 169 | 356 | 4.99e-20 | 90.1 |
| MS.gene071552.t1 | AT3G23510 | 29.474 | 190 | 129 | 4 | 78 | 264 | 577 | 764 | 5.99e-20 | 90.5 |
| MS.gene071552.t1 | AT3G23530 | 28.947 | 190 | 130 | 4 | 78 | 264 | 577 | 764 | 9.30e-20 | 89.7 |
| MS.gene071552.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 137 | 333 | 1.72e-15 | 76.6 |
| MS.gene071552.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 100 | 296 | 1.98e-15 | 76.6 |
Find 55 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCGTAATGTTGAGATTT+TGG | 0.142343 | 3.3:+86191328 | None:intergenic |
| GAACTGTATGACCATCTTTC+AGG | 0.193403 | 3.3:+86190539 | None:intergenic |
| GTCAACCATTGGCTGGTAAA+TGG | 0.204557 | 3.3:-86189555 | MS.gene071552:CDS |
| TCTTTCTTTAAGCTGGTTCT+TGG | 0.257853 | 3.3:-86191298 | MS.gene071552:CDS |
| TACAGTAGTTCCAGGGTTAC+AGG | 0.312484 | 3.3:-86190466 | MS.gene071552:CDS |
| CCTGGAACTACTGTAATTCT+TGG | 0.323390 | 3.3:+86190474 | None:intergenic |
| ATTACAAGATACTTCTTTAC+CGG | 0.330934 | 3.3:-86189775 | MS.gene071552:CDS |
| AGAAATGATGAACGAATAAA+AGG | 0.335415 | 3.3:+86189991 | None:intergenic |
| CTTGATGTCGGATGCGGTTG+GGG | 0.363488 | 3.3:-86190517 | MS.gene071552:CDS |
| TCTTGATGTCGGATGCGGTT+GGG | 0.364766 | 3.3:-86190518 | MS.gene071552:CDS |
| AGTCTTCTGATGACGGCATC+AGG | 0.366796 | 3.3:+86191561 | None:intergenic |
| CCAAGAATTACAGTAGTTCC+AGG | 0.371781 | 3.3:-86190474 | MS.gene071552:CDS |
| TCAACCATTGGCTGGTAAAT+GGG | 0.399932 | 3.3:-86189554 | MS.gene071552:CDS |
| AGAAAGTACAGTGAGCAAAT+TGG | 0.401458 | 3.3:+86191463 | None:intergenic |
| ACCTACCTCTTTCTTTAAGC+TGG | 0.401709 | 3.3:-86191305 | MS.gene071552:CDS |
| AGCCTCTTCCAATGTCTTTG+AGG | 0.408387 | 3.3:+86190600 | None:intergenic |
| ACATCAGTACTGACTGCAAT+AGG | 0.444713 | 3.3:+86191352 | None:intergenic |
| TTCTTGATGTCGGATGCGGT+TGG | 0.446691 | 3.3:-86190519 | MS.gene071552:CDS |
| AGACATTAGTACATTTGAAA+TGG | 0.457001 | 3.3:-86190191 | MS.gene071552:CDS |
| AGCTTCACGGTGGTGTTGTA+AGG | 0.461791 | 3.3:+86191615 | None:intergenic |
| ATTGCAGATTCCTGTAACCC+TGG | 0.462607 | 3.3:+86190456 | None:intergenic |
| GCCATCCTCTTTCATCCAGT+TGG | 0.466674 | 3.3:+86190013 | None:intergenic |
| CTCTTCTGCCTCAAAGACAT+TGG | 0.471861 | 3.3:-86190608 | MS.gene071552:CDS |
| TGCTGCAGGCATAGTTCCTC+CGG | 0.476336 | 3.3:+86189756 | None:intergenic |
| AGCATTTGCCTACCACTTTG+AGG | 0.477976 | 3.3:-86189961 | MS.gene071552:intron |
| TCTAACCTCAAACATTTCAA+TGG | 0.479904 | 3.3:+86190144 | None:intergenic |
| TTCTCAAGAAGATATCCAAC+TGG | 0.482343 | 3.3:-86190028 | MS.gene071552:CDS |
| AAGAACCAGCTTAAAGAAAG+AGG | 0.482405 | 3.3:+86191300 | None:intergenic |
| TTGGAAACAACCTCAAATAC+AGG | 0.508399 | 3.3:-86191279 | MS.gene071552:intron |
| ACAGTTCTTGATGTCGGATG+CGG | 0.517068 | 3.3:-86190523 | MS.gene071552:CDS |
| TACTATTGTCAACCATTGGC+TGG | 0.520020 | 3.3:-86189562 | MS.gene071552:CDS |
| ACCACCGTGAAGCTGATGCT+TGG | 0.540117 | 3.3:-86191606 | MS.gene071552:CDS |
| TGCCTCAAAGACATTGGAAG+AGG | 0.542100 | 3.3:-86190602 | MS.gene071552:CDS |
| GAAAGCTGAAGTTCAGCAGA+AGG | 0.542654 | 3.3:+86191495 | None:intergenic |
| TGAACCAAGCATCAGCTTCA+CGG | 0.542958 | 3.3:+86191602 | None:intergenic |
| GTTTCCCATTTACCAGCCAA+TGG | 0.543039 | 3.3:+86189550 | None:intergenic |
| GATATCCAACTGGATGAAAG+AGG | 0.555708 | 3.3:-86190018 | MS.gene071552:CDS |
| AGTGGTAGGCAAATGCTTTG+TGG | 0.556397 | 3.3:+86189967 | None:intergenic |
| TAAAGAAGTAGATTTGCTGC+AGG | 0.572831 | 3.3:+86189742 | None:intergenic |
| CAAGAATTACAGTAGTTCCA+GGG | 0.581678 | 3.3:-86190473 | MS.gene071552:CDS |
| GAAGTTTACCTCAAAGTGGT+AGG | 0.587833 | 3.3:+86189953 | None:intergenic |
| ATGTTACTATTGTCAACCAT+TGG | 0.590024 | 3.3:-86189566 | MS.gene071552:CDS |
| GAGAGATCAAACCTGAAAGA+TGG | 0.590354 | 3.3:-86190550 | MS.gene071552:CDS |
| GGTCATACAGTTCTTGATGT+CGG | 0.592044 | 3.3:-86190529 | MS.gene071552:CDS |
| GGAAACACTACGCACAAACC+AGG | 0.597454 | 3.3:-86189533 | None:intergenic |
| ACGTGTGAGTCTTCTGATGA+CGG | 0.603178 | 3.3:+86191554 | None:intergenic |
| GGAGCTGCAGCTGCAAAATG+TGG | 0.607827 | 3.3:-86190227 | MS.gene071552:CDS |
| ACCAGCTTAAAGAAAGAGGT+AGG | 0.613974 | 3.3:+86191304 | None:intergenic |
| TCCAACTGGATGAAAGAGGA+TGG | 0.623823 | 3.3:-86190014 | MS.gene071552:CDS |
| TTGATGTCGGATGCGGTTGG+GGG | 0.625116 | 3.3:-86190516 | MS.gene071552:CDS |
| ATATGAAGTTTACCTCAAAG+TGG | 0.632893 | 3.3:+86189949 | None:intergenic |
| GTCTTCTGATGACGGCATCA+GGG | 0.634408 | 3.3:+86191562 | None:intergenic |
| ACAAGATACTTCTTTACCGG+AGG | 0.634907 | 3.3:-86189772 | MS.gene071552:CDS |
| AAGGCTTGTAAGAAGAACGA+AGG | 0.706263 | 3.3:+86191514 | None:intergenic |
| ACCAAGCATCAGCTTCACGG+TGG | 0.763639 | 3.3:+86191605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTAAATTTGATTC+AGG | - | chr3.3:86191080-86191099 | MS.gene071552:intron | 10.0% |
| !! | TGTTCTATATATAACAAAAT+CGG | + | chr3.3:86189733-86189752 | None:intergenic | 15.0% |
| !! | TTAAATTGTTTATCCAAATA+CGG | + | chr3.3:86190064-86190083 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCTATACAA+GGG | - | chr3.3:86190125-86190144 | MS.gene071552:intron | 15.0% |
| !! | TACAATATCAAGAAATATAC+CGG | + | chr3.3:86190775-86190794 | None:intergenic | 20.0% |
| !! | TGAACATTACATAAATCATA+AGG | + | chr3.3:86190509-86190528 | None:intergenic | 20.0% |
| !!! | GTATAAGTTATTTCTATACA+AGG | - | chr3.3:86190124-86190143 | MS.gene071552:intron | 20.0% |
| ! | AAACTATATGAAATGCACAA+TGG | + | chr3.3:86190811-86190830 | None:intergenic | 25.0% |
| ! | AGAAATGATGAACGAATAAA+AGG | + | chr3.3:86191182-86191201 | None:intergenic | 25.0% |
| ! | AGAATCATGACGAAATATAA+AGG | + | chr3.3:86191543-86191562 | None:intergenic | 25.0% |
| ! | AGACATTAGTACATTTGAAA+TGG | - | chr3.3:86190979-86190998 | MS.gene071552:intron | 25.0% |
| ! | ATGTTCATATTTGTATGAAC+TGG | - | chr3.3:86190522-86190541 | MS.gene071552:CDS | 25.0% |
| ! | ATTACAAGATACTTCTTTAC+CGG | - | chr3.3:86191395-86191414 | MS.gene071552:intron | 25.0% |
| ! | CTCAAATAAATCAAGTCAAA+CGG | - | chr3.3:86190310-86190329 | MS.gene071552:intron | 25.0% |
| ! | CTTAAAAATACCTGTATTTG+AGG | + | chr3.3:86189904-86189923 | None:intergenic | 25.0% |
| ! | CTTATACAATAAGCTGAAAA+CGG | - | chr3.3:86190212-86190231 | MS.gene071552:CDS | 25.0% |
| ! | GATGTAAAATGATTGTTTCA+TGG | - | chr3.3:86190423-86190442 | MS.gene071552:CDS | 25.0% |
| ! | GCTTTACACAACAAAATTAT+CGG | + | chr3.3:86191521-86191540 | None:intergenic | 25.0% |
| ! | TATATTACTAAGACCGTATT+TGG | - | chr3.3:86190048-86190067 | MS.gene071552:CDS | 25.0% |
| ! | TCACTTGTAATTGAATTCTT+TGG | - | chr3.3:86191565-86191584 | MS.gene071552:CDS | 25.0% |
| !! | AATCATTTTACATCGCATTA+AGG | + | chr3.3:86190417-86190436 | None:intergenic | 25.0% |
| !! | AATTCGTAATGTTGAGATTT+TGG | + | chr3.3:86189845-86189864 | None:intergenic | 25.0% |
| !! | ATTCGTAATGTTGAGATTTT+GGG | + | chr3.3:86189844-86189863 | None:intergenic | 25.0% |
| !! | ATTTTCCATTGAAATGTTTG+AGG | - | chr3.3:86191021-86191040 | MS.gene071552:intron | 25.0% |
| !! | GATTTATTTGAGTTTATCCA+CGG | + | chr3.3:86190302-86190321 | None:intergenic | 25.0% |
| !!! | AGAACTCAATTAGTCTTATT+AGG | + | chr3.3:86191306-86191325 | None:intergenic | 25.0% |
| !!! | CAATTAGTCTTATTAGGTAT+TGG | + | chr3.3:86191300-86191319 | None:intergenic | 25.0% |
| AATAAGCTGAAAACGGTTTA+TGG | - | chr3.3:86190219-86190238 | MS.gene071552:CDS | 30.0% | |
| AGGACAAAAATGAAGATGAT+TGG | - | chr3.3:86191372-86191391 | MS.gene071552:intron | 30.0% | |
| ATATGAAGTTTACCTCAAAG+TGG | + | chr3.3:86191224-86191243 | None:intergenic | 30.0% | |
| ATGTTACTATTGTCAACCAT+TGG | - | chr3.3:86191604-86191623 | MS.gene071552:CDS | 30.0% | |
| CTACATAATTCAAGCTTACT+TGG | + | chr3.3:86191457-86191476 | None:intergenic | 30.0% | |
| TCTAACCTCAAACATTTCAA+TGG | + | chr3.3:86191029-86191048 | None:intergenic | 30.0% | |
| ! | ACTATCTTTAAGGAATATGG+TGG | - | chr3.3:86190333-86190352 | MS.gene071552:intron | 30.0% |
| ! | ATCTAAGAACTGATTCATCA+AGG | - | chr3.3:86189952-86189971 | MS.gene071552:intron | 30.0% |
| ! | ATGATTTGCAAGACAAGTAT+TGG | + | chr3.3:86190874-86190893 | None:intergenic | 30.0% |
| ! | GACTCAAAAAGCTTTTATTG+AGG | - | chr3.3:86190742-86190761 | MS.gene071552:intron | 30.0% |
| ! | TCTAAGAACTGATTCATCAA+GGG | - | chr3.3:86189953-86189972 | MS.gene071552:intron | 30.0% |
| ! | TTACTTGCTACTTATCATGT+AGG | - | chr3.3:86191352-86191371 | MS.gene071552:CDS | 30.0% |
| !! | ATGTTTGAGGTTAGATTTTG+TGG | - | chr3.3:86191034-86191053 | MS.gene071552:intron | 30.0% |
| !! | TGTTTGAGGTTAGATTTTGT+GGG | - | chr3.3:86191035-86191054 | MS.gene071552:intron | 30.0% |
| !!! | AATAAAAGCTTTTTGAGTCG+TGG | + | chr3.3:86190741-86190760 | None:intergenic | 30.0% |
| AAAACACCTGTGAGACTATT+AGG | + | chr3.3:86190275-86190294 | None:intergenic | 35.0% | |
| AAGAACCAGCTTAAAGAAAG+AGG | + | chr3.3:86189873-86189892 | None:intergenic | 35.0% | |
| CAAACTGAGATAGTCAACTA+AGG | + | chr3.3:86191251-86191270 | None:intergenic | 35.0% | |
| CAAGAATTACAGTAGTTCCA+GGG | - | chr3.3:86190697-86190716 | MS.gene071552:intron | 35.0% | |
| GGTACTACTGCAATACTATT+GGG | + | chr3.3:86191500-86191519 | None:intergenic | 35.0% | |
| GTGTATAGCTTAACTGCATT+GGG | - | chr3.3:86190016-86190035 | MS.gene071552:CDS | 35.0% | |
| TGCAGTTAAGCTATACACAA+AGG | + | chr3.3:86190014-86190033 | None:intergenic | 35.0% | |
| TGTGTATAGCTTAACTGCAT+TGG | - | chr3.3:86190015-86190034 | MS.gene071552:CDS | 35.0% | |
| TTCTCAAGAAGATATCCAAC+TGG | - | chr3.3:86191142-86191161 | MS.gene071552:intron | 35.0% | |
| TTGGAAACAACCTCAAATAC+AGG | - | chr3.3:86189891-86189910 | MS.gene071552:intron | 35.0% | |
| ! | AGAAAGTACAGTGAGCAAAT+TGG | + | chr3.3:86189710-86189729 | None:intergenic | 35.0% |
| ! | CGGACTATCTTTAAGGAATA+TGG | - | chr3.3:86190330-86190349 | MS.gene071552:intron | 35.0% |
| ! | CTTTAAGGAATATGGTGGTA+GGG | - | chr3.3:86190338-86190357 | MS.gene071552:intron | 35.0% |
| ! | CTTTTATTGAGGAGAAATGC+CGG | - | chr3.3:86190753-86190772 | MS.gene071552:intron | 35.0% |
| ! | TCTTTAAGGAATATGGTGGT+AGG | - | chr3.3:86190337-86190356 | MS.gene071552:intron | 35.0% |
| ! | TCTTTCTTTAAGCTGGTTCT+TGG | - | chr3.3:86189872-86189891 | MS.gene071552:intron | 35.0% |
| !! | AATTCTTTGGTGATGTGTGA+AGG | - | chr3.3:86191578-86191597 | MS.gene071552:CDS | 35.0% |
| !! | AGTCAAACGGACTATCTTTA+AGG | - | chr3.3:86190323-86190342 | MS.gene071552:intron | 35.0% |
| !! | TAAAGAAGTAGATTTGCTGC+AGG | + | chr3.3:86191431-86191450 | None:intergenic | 35.0% |
| !!! | TGATGCTTTTTCAGCTTTAC+AGG | - | chr3.3:86189790-86189809 | MS.gene071552:CDS | 35.0% |
| AAGGCTTGTAAGAAGAACGA+AGG | + | chr3.3:86189659-86189678 | None:intergenic | 40.0% | |
| ACAAGATACTTCTTTACCGG+AGG | - | chr3.3:86191398-86191417 | MS.gene071552:intron | 40.0% | |
| ACCAGCTTAAAGAAAGAGGT+AGG | + | chr3.3:86189869-86189888 | None:intergenic | 40.0% | |
| ACCTACCTCTTTCTTTAAGC+TGG | - | chr3.3:86189865-86189884 | MS.gene071552:intron | 40.0% | |
| ACGGTTTATGGACATGTCAT+AGG | - | chr3.3:86190231-86190250 | MS.gene071552:intron | 40.0% | |
| CCAAGAATTACAGTAGTTCC+AGG | - | chr3.3:86190696-86190715 | MS.gene071552:intron | 40.0% | |
| CCTGGAACTACTGTAATTCT+TGG | + | chr3.3:86190699-86190718 | None:intergenic | 40.0% | |
| CGGTACTACTGCAATACTAT+TGG | + | chr3.3:86191501-86191520 | None:intergenic | 40.0% | |
| GAACTGTATGACCATCTTTC+AGG | + | chr3.3:86190634-86190653 | None:intergenic | 40.0% | |
| GAAGTTTACCTCAAAGTGGT+AGG | + | chr3.3:86191220-86191239 | None:intergenic | 40.0% | |
| GAGAGATCAAACCTGAAAGA+TGG | - | chr3.3:86190620-86190639 | MS.gene071552:CDS | 40.0% | |
| GATATCCAACTGGATGAAAG+AGG | - | chr3.3:86191152-86191171 | MS.gene071552:intron | 40.0% | |
| GGTCATACAGTTCTTGATGT+CGG | - | chr3.3:86190641-86190660 | MS.gene071552:intron | 40.0% | |
| GTTCTTCATATGCTGTGTCA+TGG | + | chr3.3:86191112-86191131 | None:intergenic | 40.0% | |
| GTTTCATGGATGCAGTTTGT+TGG | - | chr3.3:86190437-86190456 | MS.gene071552:CDS | 40.0% | |
| TACTATTGTCAACCATTGGC+TGG | - | chr3.3:86191608-86191627 | MS.gene071552:CDS | 40.0% | |
| ! | TCAACCATTGGCTGGTAAAT+GGG | - | chr3.3:86191616-86191635 | MS.gene071552:CDS | 40.0% |
| !! | ACATCAGTACTGACTGCAAT+AGG | + | chr3.3:86189821-86189840 | None:intergenic | 40.0% |
| ACAGTTCTTGATGTCGGATG+CGG | - | chr3.3:86190647-86190666 | MS.gene071552:intron | 45.0% | |
| ACGTGTGAGTCTTCTGATGA+CGG | + | chr3.3:86189619-86189638 | None:intergenic | 45.0% | |
| AGCATTTGCCTACCACTTTG+AGG | - | chr3.3:86191209-86191228 | MS.gene071552:intron | 45.0% | |
| AGCCTCTTCCAATGTCTTTG+AGG | + | chr3.3:86190573-86190592 | None:intergenic | 45.0% | |
| AGTGGTAGGCAAATGCTTTG+TGG | + | chr3.3:86191206-86191225 | None:intergenic | 45.0% | |
| ATTGCAGATTCCTGTAACCC+TGG | + | chr3.3:86190717-86190736 | None:intergenic | 45.0% | |
| CTCTTCTGCCTCAAAGACAT+TGG | - | chr3.3:86190562-86190581 | MS.gene071552:CDS | 45.0% | |
| GAAAGCTGAAGTTCAGCAGA+AGG | + | chr3.3:86189678-86189697 | None:intergenic | 45.0% | |
| GGAATATGGTGGTAGGGTAA+AGG | - | chr3.3:86190344-86190363 | MS.gene071552:intron | 45.0% | |
| GTTCTGCCTAATAGTCTCAC+AGG | - | chr3.3:86190266-86190285 | MS.gene071552:intron | 45.0% | |
| GTTTCCCATTTACCAGCCAA+TGG | + | chr3.3:86191623-86191642 | None:intergenic | 45.0% | |
| TACAGTAGTTCCAGGGTTAC+AGG | - | chr3.3:86190704-86190723 | MS.gene071552:intron | 45.0% | |
| TCCAACTGGATGAAAGAGGA+TGG | - | chr3.3:86191156-86191175 | MS.gene071552:intron | 45.0% | |
| TGAACCAAGCATCAGCTTCA+CGG | + | chr3.3:86189571-86189590 | None:intergenic | 45.0% | |
| TGCCTCAAAGACATTGGAAG+AGG | - | chr3.3:86190568-86190587 | MS.gene071552:CDS | 45.0% | |
| ! | GATTCATCAAGGGTGTGTGT+GGG | - | chr3.3:86189963-86189982 | MS.gene071552:CDS | 45.0% |
| ! | GTCAACCATTGGCTGGTAAA+TGG | - | chr3.3:86191615-86191634 | MS.gene071552:CDS | 45.0% |
| ! | TGATTCATCAAGGGTGTGTG+TGG | - | chr3.3:86189962-86189981 | MS.gene071552:CDS | 45.0% |
| ! | TTTTCACTGCCCTCTTGTCA+GGG | - | chr3.3:86190922-86190941 | MS.gene071552:intron | 45.0% |
| ! | TTTTTCACTGCCCTCTTGTC+AGG | - | chr3.3:86190921-86190940 | MS.gene071552:intron | 45.0% |
| !!! | TCACAGGTGTTTTTTGTCCG+TGG | - | chr3.3:86190282-86190301 | MS.gene071552:intron | 45.0% |
| GCCATCCTCTTTCATCCAGT+TGG | + | chr3.3:86191160-86191179 | None:intergenic | 50.0% | |
| GTGTGTGTGGGATGAATGGT+AGG | - | chr3.3:86189975-86189994 | MS.gene071552:CDS | 50.0% | |
| TCTTGATGTCGGATGCGGTT+GGG | - | chr3.3:86190652-86190671 | MS.gene071552:intron | 50.0% | |
| TTCTTGATGTCGGATGCGGT+TGG | - | chr3.3:86190651-86190670 | MS.gene071552:intron | 50.0% | |
| ! | AAGGGTGTGTGTGGGATGAA+TGG | - | chr3.3:86189971-86189990 | MS.gene071552:CDS | 50.0% |
| !! | AGCTTCACGGTGGTGTTGTA+AGG | + | chr3.3:86189558-86189577 | None:intergenic | 50.0% |
| !! | AGTCTTCTGATGACGGCATC+AGG | + | chr3.3:86189612-86189631 | None:intergenic | 50.0% |
| !! | GTCTTCTGATGACGGCATCA+GGG | + | chr3.3:86189611-86189630 | None:intergenic | 50.0% |
| ACCAAGCATCAGCTTCACGG+TGG | + | chr3.3:86189568-86189587 | None:intergenic | 55.0% | |
| ACCACCGTGAAGCTGATGCT+TGG | - | chr3.3:86189564-86189583 | MS.gene071552:CDS | 55.0% | |
| CTTGATGTCGGATGCGGTTG+GGG | - | chr3.3:86190653-86190672 | MS.gene071552:intron | 55.0% | |
| GGAGCTGCAGCTGCAAAATG+TGG | - | chr3.3:86190943-86190962 | MS.gene071552:intron | 55.0% | |
| TGCTGCAGGCATAGTTCCTC+CGG | + | chr3.3:86191417-86191436 | None:intergenic | 55.0% | |
| TTGATGTCGGATGCGGTTGG+GGG | - | chr3.3:86190654-86190673 | MS.gene071552:intron | 55.0% | |
| AGCTGCAGCTCCCTGACAAG+AGG | + | chr3.3:86190935-86190954 | None:intergenic | 60.0% | |
| GCTGCAGCTCCCTGACAAGA+GGG | + | chr3.3:86190934-86190953 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86189534 | 86191658 | 86189534 | ID=MS.gene071552 |
| chr3.3 | mRNA | 86189534 | 86191658 | 86189534 | ID=MS.gene071552.t1;Parent=MS.gene071552 |
| chr3.3 | exon | 86191472 | 86191658 | 86191472 | ID=MS.gene071552.t1.exon1;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86191472 | 86191658 | 86191472 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| chr3.3 | exon | 86191280 | 86191388 | 86191280 | ID=MS.gene071552.t1.exon2;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86191280 | 86191388 | 86191280 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| chr3.3 | exon | 86190418 | 86190642 | 86190418 | ID=MS.gene071552.t1.exon3;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86190418 | 86190642 | 86190418 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| chr3.3 | exon | 86190150 | 86190249 | 86190150 | ID=MS.gene071552.t1.exon4;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86190150 | 86190249 | 86190150 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| chr3.3 | exon | 86189962 | 86190072 | 86189962 | ID=MS.gene071552.t1.exon5;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86189962 | 86190072 | 86189962 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| chr3.3 | exon | 86189735 | 86189818 | 86189735 | ID=MS.gene071552.t1.exon6;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86189735 | 86189818 | 86189735 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| chr3.3 | exon | 86189534 | 86189592 | 86189534 | ID=MS.gene071552.t1.exon7;Parent=MS.gene071552.t1 |
| chr3.3 | CDS | 86189534 | 86189592 | 86189534 | ID=cds.MS.gene071552.t1;Parent=MS.gene071552.t1 |
| Gene Sequence |
| Protein sequence |
