Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32786.t1 | XP_003603178.2 | 97.7 | 355 | 8 | 0 | 1 | 355 | 4 | 358 | 5.90E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32786.t1 | Q5C9L6 | 52.3 | 352 | 164 | 2 | 8 | 355 | 10 | 361 | 8.8e-105 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32786.t1 | I3S3W0 | 97.7 | 355 | 8 | 0 | 1 | 355 | 4 | 358 | 4.2e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene32786 | 0.811646 | 6.31E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene32786 | 0.836406 | 9.54E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene32786 | 0.810447 | 1.15E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene32786 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene32786 | 0.808053 | 3.74E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene32786 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene32786 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene050319 | MS.gene32786 | -0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene050330 | MS.gene32786 | -0.842584 | 2.36E-58 | -1.69E-46 |
| MS.gene050438 | MS.gene32786 | 0.829405 | 5.24E-55 | -1.69E-46 |
| MS.gene050558 | MS.gene32786 | 0.841472 | 4.65E-58 | -1.69E-46 |
| MS.gene050560 | MS.gene32786 | 0.80657 | 7.71E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene32786 | 0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene050787 | MS.gene32786 | 0.805692 | 1.18E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene32786 | 0.814124 | 1.81E-51 | -1.69E-46 |
| MS.gene051257 | MS.gene32786 | 0.811566 | 6.57E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene32786 | 0.827116 | 1.87E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene32786 | 0.823153 | 1.61E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene32786 | 0.838257 | 3.20E-57 | -1.69E-46 |
| MS.gene051983 | MS.gene32786 | 0.813397 | 2.61E-51 | -1.69E-46 |
| MS.gene052207 | MS.gene32786 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene32786 | 0.863062 | 3.25E-64 | -1.69E-46 |
| MS.gene054473 | MS.gene32786 | 0.825857 | 3.73E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene32786 | 0.807712 | 4.42E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene32786 | 0.835096 | 2.05E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene32786 | 0.841545 | 4.45E-58 | -1.69E-46 |
| MS.gene056612 | MS.gene32786 | 0.800803 | 1.21E-48 | -1.69E-46 |
| MS.gene056875 | MS.gene32786 | 0.821979 | 3.03E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene32786 | 0.817327 | 3.49E-52 | -1.69E-46 |
| MS.gene057121 | MS.gene32786 | 0.831944 | 1.25E-55 | -1.69E-46 |
| MS.gene057245 | MS.gene32786 | 0.828225 | 1.01E-54 | -1.69E-46 |
| MS.gene057260 | MS.gene32786 | 0.823109 | 1.65E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene32786 | 0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene32786 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene32786 | 0.809033 | 2.31E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene32786 | 0.81889 | 1.55E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene32786 | 0.810222 | 1.28E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene32786 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene32786 | -0.810152 | 1.33E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene32786 | 0.807052 | 6.10E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene32786 | 0.803903 | 2.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32786 | MS.gene066522 | PPI |
| MS.gene37405 | MS.gene32786 | PPI |
| MS.gene014995 | MS.gene32786 | PPI |
| MS.gene32786 | MS.gene071549 | PPI |
| MS.gene32786 | MS.gene071552 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32786.t1 | MTR_3g104740 | 97.746 | 355 | 8 | 0 | 1 | 355 | 4 | 358 | 0.0 | 730 |
| MS.gene32786.t1 | MTR_1g073700 | 29.060 | 234 | 159 | 5 | 78 | 306 | 576 | 807 | 7.70e-23 | 100 |
| MS.gene32786.t1 | MTR_1g044520 | 25.214 | 234 | 168 | 5 | 78 | 306 | 540 | 771 | 8.28e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32786.t1 | AT4G33110 | 72.394 | 355 | 98 | 0 | 1 | 355 | 1 | 355 | 0.0 | 570 |
| MS.gene32786.t1 | AT4G33110 | 72.394 | 355 | 98 | 0 | 1 | 355 | 1 | 355 | 0.0 | 570 |
| MS.gene32786.t1 | AT4G33120 | 69.859 | 355 | 107 | 0 | 1 | 355 | 1 | 355 | 0.0 | 550 |
| MS.gene32786.t1 | AT3G23510 | 27.165 | 254 | 175 | 6 | 78 | 326 | 577 | 825 | 7.72e-21 | 94.4 |
| MS.gene32786.t1 | AT3G23480 | 31.579 | 190 | 124 | 5 | 78 | 264 | 168 | 354 | 9.67e-21 | 93.2 |
| MS.gene32786.t1 | AT3G23530 | 26.772 | 254 | 176 | 6 | 78 | 326 | 577 | 825 | 1.33e-20 | 94.0 |
| MS.gene32786.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 8.17e-20 | 90.9 |
| MS.gene32786.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 8.17e-20 | 90.9 |
| MS.gene32786.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 169 | 356 | 8.44e-20 | 90.5 |
| MS.gene32786.t1 | AT3G23480 | 25.283 | 265 | 185 | 9 | 68 | 326 | 137 | 394 | 3.96e-15 | 76.6 |
| MS.gene32786.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 100 | 296 | 4.52e-15 | 76.6 |
Find 67 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGTTGATTCCATAAT+TGG | 0.122160 | 3.1:+82730598 | None:intergenic |
| AATTCGTAATGTTGAGATTT+TGG | 0.142343 | 3.1:+82732571 | None:intergenic |
| GAACTGTATGACCATCTTTC+AGG | 0.193403 | 3.1:+82731790 | None:intergenic |
| TCTTTCTTTAAGCTGGTTCT+TGG | 0.257853 | 3.1:-82732541 | MS.gene32786:CDS |
| ATAGCTGTAGCAGAACTATT+TGG | 0.260405 | 3.1:-82730529 | MS.gene32786:CDS |
| GTCAACCATTGGCTGGTAAA+TGG | 0.264020 | 3.1:-82730806 | MS.gene32786:CDS |
| TACAGTAGTTCCAGGGTTAC+AGG | 0.312484 | 3.1:-82731717 | MS.gene32786:CDS |
| GACTTCCATCAAGCCAATTA+TGG | 0.317037 | 3.1:-82730611 | MS.gene32786:CDS |
| CCTGGAACTACTGTAATTCT+TGG | 0.323390 | 3.1:+82731725 | None:intergenic |
| ATTACAAGATACTTCTTTAC+CGG | 0.330934 | 3.1:-82731026 | MS.gene32786:CDS |
| AGAAATGATGAACGAATAAA+AGG | 0.335415 | 3.1:+82731243 | None:intergenic |
| CTTGATGTCGGATGCGGTTG+GGG | 0.363488 | 3.1:-82731768 | MS.gene32786:CDS |
| TCTTGATGTCGGATGCGGTT+GGG | 0.364766 | 3.1:-82731769 | MS.gene32786:CDS |
| AGTCTTCTGATGACGGCATC+AGG | 0.366796 | 3.1:+82732804 | None:intergenic |
| CCAAGAATTACAGTAGTTCC+AGG | 0.371781 | 3.1:-82731725 | MS.gene32786:CDS |
| TCAACCATTGGCTGGTAAAT+GGG | 0.399932 | 3.1:-82730805 | MS.gene32786:CDS |
| AGAAAGTACAGTGAGCAAAT+TGG | 0.401458 | 3.1:+82732706 | None:intergenic |
| ACCTACCTCTTTCTTTAAGC+TGG | 0.401709 | 3.1:-82732548 | MS.gene32786:CDS |
| AGCCTCTTCCAATGTCTTTG+AGG | 0.408387 | 3.1:+82731851 | None:intergenic |
| GAACTATTTGGATACAATAA+TGG | 0.412686 | 3.1:-82730517 | MS.gene32786:CDS |
| TGATTCCATAATTGGCTTGA+TGG | 0.414616 | 3.1:+82730606 | None:intergenic |
| ACATCAGTACTGACTGCAAT+AGG | 0.444713 | 3.1:+82732595 | None:intergenic |
| TTCTTGATGTCGGATGCGGT+TGG | 0.446691 | 3.1:-82731770 | MS.gene32786:CDS |
| CTACCAAATGGACTGTCTAC+TGG | 0.453211 | 3.1:-82730564 | MS.gene32786:CDS |
| AGACATTAGTACATTTGAAA+TGG | 0.457001 | 3.1:-82731442 | MS.gene32786:CDS |
| CCAATTATGGAATCAACATA+TGG | 0.460490 | 3.1:-82730598 | MS.gene32786:CDS |
| AGCTTCACGGTGGTGTTGTA+AGG | 0.461791 | 3.1:+82732858 | None:intergenic |
| ATTGCAGATTCCTGTAACCC+TGG | 0.462607 | 3.1:+82731707 | None:intergenic |
| GCCATCCTCTTTCATCCAGT+TGG | 0.466674 | 3.1:+82731265 | None:intergenic |
| CTCTTCTGCCTCAAAGACAT+TGG | 0.471861 | 3.1:-82731859 | MS.gene32786:CDS |
| TGCTGCAGGCATAGTTCCTC+CGG | 0.476336 | 3.1:+82731007 | None:intergenic |
| AGCATTTGCCTACCACTTTG+AGG | 0.477976 | 3.1:-82731213 | MS.gene32786:intron |
| TCTAACCTCAAACATTTCAA+TGG | 0.479904 | 3.1:+82731395 | None:intergenic |
| TTCTCAAGAAGATATCCAAC+TGG | 0.482343 | 3.1:-82731280 | MS.gene32786:CDS |
| AAGAACCAGCTTAAAGAAAG+AGG | 0.482405 | 3.1:+82732543 | None:intergenic |
| TGAAGAGTGGCTCAAAAGAA+TGG | 0.485809 | 3.1:-82730644 | MS.gene32786:CDS |
| GCAAAGATTCAGCTACCAAA+TGG | 0.488606 | 3.1:-82730576 | MS.gene32786:CDS |
| TCTCCAGTAGACAGTCCATT+TGG | 0.500310 | 3.1:+82730561 | None:intergenic |
| TTGGAAACAACCTCAAATAC+AGG | 0.508399 | 3.1:-82732522 | MS.gene32786:intron |
| ACAGTTCTTGATGTCGGATG+CGG | 0.517068 | 3.1:-82731774 | MS.gene32786:CDS |
| GATACAATAATGGTGAAGAA+TGG | 0.527408 | 3.1:-82730507 | MS.gene32786:CDS |
| ACCACCGTGAAGCTGATGCT+TGG | 0.540117 | 3.1:-82732849 | MS.gene32786:CDS |
| TGCCTCAAAGACATTGGAAG+AGG | 0.542100 | 3.1:-82731853 | MS.gene32786:CDS |
| GAAAGCTGAAGTTCAGCAGA+AGG | 0.542654 | 3.1:+82732738 | None:intergenic |
| TGAACCAAGCATCAGCTTCA+CGG | 0.542958 | 3.1:+82732845 | None:intergenic |
| GTTTCCCATTTACCAGCCAA+TGG | 0.543039 | 3.1:+82730801 | None:intergenic |
| GATATCCAACTGGATGAAAG+AGG | 0.555708 | 3.1:-82731270 | MS.gene32786:CDS |
| AGTGGTAGGCAAATGCTTTG+TGG | 0.556397 | 3.1:+82731219 | None:intergenic |
| CAATAATGGTGAAGAATGGA+TGG | 0.562198 | 3.1:-82730503 | MS.gene32786:CDS |
| ATGTTACTGTTGTCAACCAT+TGG | 0.570038 | 3.1:-82730817 | MS.gene32786:CDS |
| TAAAGAAGTAGATTTGCTGC+AGG | 0.572831 | 3.1:+82730993 | None:intergenic |
| TACTGTTGTCAACCATTGGC+TGG | 0.579302 | 3.1:-82730813 | MS.gene32786:CDS |
| CAAGAATTACAGTAGTTCCA+GGG | 0.581678 | 3.1:-82731724 | MS.gene32786:CDS |
| GAAGTTTACCTCAAAGTGGT+AGG | 0.587833 | 3.1:+82731205 | None:intergenic |
| GAGAGATCAAACCTGAAAGA+TGG | 0.590354 | 3.1:-82731801 | MS.gene32786:CDS |
| GGTCATACAGTTCTTGATGT+CGG | 0.592044 | 3.1:-82731780 | MS.gene32786:CDS |
| GGAAACACTACGCACAAACC+AGG | 0.597454 | 3.1:-82730784 | MS.gene32786:intron |
| ACGTGTGAGTCTTCTGATGA+CGG | 0.603178 | 3.1:+82732797 | None:intergenic |
| GGAGCTGCAGCTGCAAAATG+TGG | 0.607827 | 3.1:-82731478 | MS.gene32786:CDS |
| ACCAGCTTAAAGAAAGAGGT+AGG | 0.613974 | 3.1:+82732547 | None:intergenic |
| TCCAACTGGATGAAAGAGGA+TGG | 0.623823 | 3.1:-82731266 | MS.gene32786:CDS |
| TTGATGTCGGATGCGGTTGG+GGG | 0.625116 | 3.1:-82731767 | MS.gene32786:CDS |
| ATATGAAGTTTACCTCAAAG+TGG | 0.632893 | 3.1:+82731201 | None:intergenic |
| GTCTTCTGATGACGGCATCA+GGG | 0.634408 | 3.1:+82732805 | None:intergenic |
| ACAAGATACTTCTTTACCGG+AGG | 0.634907 | 3.1:-82731023 | MS.gene32786:CDS |
| AAGGCTTGTAAGAAGAACGA+AGG | 0.706263 | 3.1:+82732757 | None:intergenic |
| ACCAAGCATCAGCTTCACGG+TGG | 0.763639 | 3.1:+82732848 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCTATATATAACAAAAT+CGG | + | chr3.1:82730673-82730692 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCTATACAA+GGG | - | chr3.1:82731066-82731085 | MS.gene32786:intron | 15.0% |
| !! | TACAATATCAAGAAATATAC+CGG | + | chr3.1:82731707-82731726 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATCCAAACA+CGG | + | chr3.1:82731005-82731024 | None:intergenic | 20.0% |
| !!! | AATCATTTTACATCGTATTA+AGG | + | chr3.1:82731349-82731368 | None:intergenic | 20.0% |
| !!! | GTATAAGTTATTTCTATACA+AGG | - | chr3.1:82731065-82731084 | MS.gene32786:intron | 20.0% |
| ! | AGAAATGATGAACGAATAAA+AGG | + | chr3.1:82732113-82732132 | None:intergenic | 25.0% |
| ! | AGAATCATGACGAAATATAA+AGG | + | chr3.1:82732475-82732494 | None:intergenic | 25.0% |
| ! | AGACATTAGTACATTTGAAA+TGG | - | chr3.1:82731911-82731930 | MS.gene32786:intron | 25.0% |
| ! | ATGTTCATATTTGTATGAAC+TGG | - | chr3.1:82731454-82731473 | MS.gene32786:CDS | 25.0% |
| ! | ATTACAAGATACTTCTTTAC+CGG | - | chr3.1:82732327-82732346 | MS.gene32786:intron | 25.0% |
| ! | CTCAAATAAATCAAGTTAGA+CGG | - | chr3.1:82731250-82731269 | MS.gene32786:CDS | 25.0% |
| ! | CTTAAAAATACCTGTATTTG+AGG | + | chr3.1:82730844-82730863 | None:intergenic | 25.0% |
| ! | CTTATACAATAAGCTGAAAA+CGG | - | chr3.1:82731153-82731172 | MS.gene32786:intron | 25.0% |
| ! | GAACTATTTGGATACAATAA+TGG | - | chr3.1:82732836-82732855 | MS.gene32786:CDS | 25.0% |
| ! | GATGTAAAATGATTGTTTCA+TGG | - | chr3.1:82731355-82731374 | MS.gene32786:intron | 25.0% |
| ! | GCTTTACACAACAAAATTAT+CGG | + | chr3.1:82732453-82732472 | None:intergenic | 25.0% |
| ! | TCACTTGTAATTGAATTCTT+TGG | - | chr3.1:82732497-82732516 | MS.gene32786:intron | 25.0% |
| ! | TCTATCCATAGTTTACTATT+TGG | - | chr3.1:82732632-82732651 | MS.gene32786:intron | 25.0% |
| ! | TGAACATTGCATAAATCATA+AGG | + | chr3.1:82731441-82731460 | None:intergenic | 25.0% |
| !! | AATTCGTAATGTTGAGATTT+TGG | + | chr3.1:82730785-82730804 | None:intergenic | 25.0% |
| !! | ATTCGTAATGTTGAGATTTT+GGG | + | chr3.1:82730784-82730803 | None:intergenic | 25.0% |
| !! | ATTTTCCATTGAAATGTTTG+AGG | - | chr3.1:82731953-82731972 | MS.gene32786:intron | 25.0% |
| !! | GATTTATTTGAGTTTATCCA+CGG | + | chr3.1:82731242-82731261 | None:intergenic | 25.0% |
| !!! | AGAACTCAATTAGTCTTATT+AGG | + | chr3.1:82732237-82732256 | None:intergenic | 25.0% |
| !!! | CAATTAGTCTTATTAGGTAT+TGG | + | chr3.1:82732231-82732250 | None:intergenic | 25.0% |
| AAAACACCTGTGAAACTATT+AGG | + | chr3.1:82731216-82731235 | None:intergenic | 30.0% | |
| AAACTATATGACATGCACAA+TGG | + | chr3.1:82731743-82731762 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACGGTTTA+TGG | - | chr3.1:82731160-82731179 | MS.gene32786:intron | 30.0% | |
| AGGACAAAAATGAAGATGAT+TGG | - | chr3.1:82732304-82732323 | MS.gene32786:intron | 30.0% | |
| ATATGAAGTTTACCTCAAAG+TGG | + | chr3.1:82732155-82732174 | None:intergenic | 30.0% | |
| CCAATTATGGAATCAACATA+TGG | - | chr3.1:82732755-82732774 | MS.gene32786:CDS | 30.0% | |
| CGTTACCAAATAGTAAACTA+TGG | + | chr3.1:82732640-82732659 | None:intergenic | 30.0% | |
| CTACATAATTCAAGCTTACT+TGG | + | chr3.1:82732389-82732408 | None:intergenic | 30.0% | |
| GATACAATAATGGTGAAGAA+TGG | - | chr3.1:82732846-82732865 | MS.gene32786:CDS | 30.0% | |
| TATATTACTAAGACCGTGTT+TGG | - | chr3.1:82730989-82731008 | MS.gene32786:CDS | 30.0% | |
| TCTAACCTCAAACATTTCAA+TGG | + | chr3.1:82731961-82731980 | None:intergenic | 30.0% | |
| ! | ACTATCTTTAAGGAATATGG+TGG | - | chr3.1:82731273-82731292 | MS.gene32786:CDS | 30.0% |
| ! | ATCTAAGAACTGATTCATCA+AGG | - | chr3.1:82730893-82730912 | MS.gene32786:intron | 30.0% |
| ! | ATGATTTGCAAGACAAGTAT+TGG | + | chr3.1:82731806-82731825 | None:intergenic | 30.0% |
| ! | GACTCAAAAAGCTTTTATTG+AGG | - | chr3.1:82731674-82731693 | MS.gene32786:CDS | 30.0% |
| ! | TACTTGCTACTTATACATGT+AGG | - | chr3.1:82732284-82732303 | MS.gene32786:intron | 30.0% |
| ! | TCTAAGAACTGATTCATCAA+GGG | - | chr3.1:82730894-82730913 | MS.gene32786:intron | 30.0% |
| !! | ATGTTTGAGGTTAGATTTTG+TGG | - | chr3.1:82731966-82731985 | MS.gene32786:intron | 30.0% |
| !! | CCATATGTTGATTCCATAAT+TGG | + | chr3.1:82732758-82732777 | None:intergenic | 30.0% |
| !! | TGTTTGAGGTTAGATTTTGT+GGG | - | chr3.1:82731967-82731986 | MS.gene32786:intron | 30.0% |
| !!! | AATAAAAGCTTTTTGAGTCG+TGG | + | chr3.1:82731673-82731692 | None:intergenic | 30.0% |
| !!! | ATTTATTTTGCAGTGAAGAG+TGG | - | chr3.1:82732696-82732715 | MS.gene32786:intron | 30.0% |
| AAGAACCAGCTTAAAGAAAG+AGG | + | chr3.1:82730813-82730832 | None:intergenic | 35.0% | |
| ATAGCTGTAGCAGAACTATT+TGG | - | chr3.1:82732824-82732843 | MS.gene32786:CDS | 35.0% | |
| ATGTTACTGTTGTCAACCAT+TGG | - | chr3.1:82732536-82732555 | MS.gene32786:CDS | 35.0% | |
| CAAACTGAGATAGTCAACTA+AGG | + | chr3.1:82732182-82732201 | None:intergenic | 35.0% | |
| CAAGAATTACAGTAGTTCCA+GGG | - | chr3.1:82731629-82731648 | MS.gene32786:intron | 35.0% | |
| CAATAATGGTGAAGAATGGA+TGG | - | chr3.1:82732850-82732869 | MS.gene32786:CDS | 35.0% | |
| GGTACTACTGCAATACTATT+GGG | + | chr3.1:82732432-82732451 | None:intergenic | 35.0% | |
| GTGTATAGCTTAACTGCATT+GGG | - | chr3.1:82730957-82730976 | MS.gene32786:intron | 35.0% | |
| GTTGGAATATGCTGAATTGT+TGG | - | chr3.1:82732591-82732610 | MS.gene32786:CDS | 35.0% | |
| TGCAGTTAAGCTATACACAA+AGG | + | chr3.1:82730955-82730974 | None:intergenic | 35.0% | |
| TGTGTATAGCTTAACTGCAT+TGG | - | chr3.1:82730956-82730975 | MS.gene32786:intron | 35.0% | |
| TTCTCAAGAAGATATCCAAC+TGG | - | chr3.1:82732073-82732092 | MS.gene32786:intron | 35.0% | |
| TTGGAAACAACCTCAAATAC+AGG | - | chr3.1:82730831-82730850 | MS.gene32786:intron | 35.0% | |
| ! | AGAAAGTACAGTGAGCAAAT+TGG | + | chr3.1:82730650-82730669 | None:intergenic | 35.0% |
| ! | CGGACTATCTTTAAGGAATA+TGG | - | chr3.1:82731270-82731289 | MS.gene32786:CDS | 35.0% |
| ! | CTTTAAGGAATATGGTGGTA+GGG | - | chr3.1:82731278-82731297 | MS.gene32786:CDS | 35.0% |
| ! | CTTTTATTGAGGAGAAATGC+CGG | - | chr3.1:82731685-82731704 | MS.gene32786:CDS | 35.0% |
| ! | TCTTTAAGGAATATGGTGGT+AGG | - | chr3.1:82731277-82731296 | MS.gene32786:CDS | 35.0% |
| ! | TCTTTCTTTAAGCTGGTTCT+TGG | - | chr3.1:82730812-82730831 | MS.gene32786:CDS | 35.0% |
| !! | AATTCTTTGGTGATGTGTGA+AGG | - | chr3.1:82732510-82732529 | MS.gene32786:intron | 35.0% |
| !! | AGTTAGACGGACTATCTTTA+AGG | - | chr3.1:82731263-82731282 | MS.gene32786:CDS | 35.0% |
| !! | TAAAGAAGTAGATTTGCTGC+AGG | + | chr3.1:82732363-82732382 | None:intergenic | 35.0% |
| !! | TGATTCCATAATTGGCTTGA+TGG | + | chr3.1:82732750-82732769 | None:intergenic | 35.0% |
| !!! | TGATGCTTTTTCAGCTTTAC+AGG | - | chr3.1:82730730-82730749 | MS.gene32786:intron | 35.0% |
| AAGGCTTGTAAGAAGAACGA+AGG | + | chr3.1:82730599-82730618 | None:intergenic | 40.0% | |
| ACAAGATACTTCTTTACCGG+AGG | - | chr3.1:82732330-82732349 | MS.gene32786:intron | 40.0% | |
| ACCAGCTTAAAGAAAGAGGT+AGG | + | chr3.1:82730809-82730828 | None:intergenic | 40.0% | |
| ACCTACCTCTTTCTTTAAGC+TGG | - | chr3.1:82730805-82730824 | MS.gene32786:CDS | 40.0% | |
| ACGGTTTATGGACATGTCAT+AGG | - | chr3.1:82731172-82731191 | MS.gene32786:intron | 40.0% | |
| CAATTCAGCATATTCCAACC+TGG | + | chr3.1:82732590-82732609 | None:intergenic | 40.0% | |
| CCAAGAATTACAGTAGTTCC+AGG | - | chr3.1:82731628-82731647 | MS.gene32786:intron | 40.0% | |
| CCTGGAACTACTGTAATTCT+TGG | + | chr3.1:82731631-82731650 | None:intergenic | 40.0% | |
| CGGTACTACTGCAATACTAT+TGG | + | chr3.1:82732433-82732452 | None:intergenic | 40.0% | |
| GAACTGTATGACCATCTTTC+AGG | + | chr3.1:82731566-82731585 | None:intergenic | 40.0% | |
| GAAGTTTACCTCAAAGTGGT+AGG | + | chr3.1:82732151-82732170 | None:intergenic | 40.0% | |
| GACTTCCATCAAGCCAATTA+TGG | - | chr3.1:82732742-82732761 | MS.gene32786:CDS | 40.0% | |
| GAGAGATCAAACCTGAAAGA+TGG | - | chr3.1:82731552-82731571 | MS.gene32786:intron | 40.0% | |
| GATATCCAACTGGATGAAAG+AGG | - | chr3.1:82732083-82732102 | MS.gene32786:intron | 40.0% | |
| GCAAAGATTCAGCTACCAAA+TGG | - | chr3.1:82732777-82732796 | MS.gene32786:CDS | 40.0% | |
| GGTCATACAGTTCTTGATGT+CGG | - | chr3.1:82731573-82731592 | MS.gene32786:intron | 40.0% | |
| GTTCTGCCTAATAGTTTCAC+AGG | - | chr3.1:82731207-82731226 | MS.gene32786:intron | 40.0% | |
| GTTCTTCATATGCTGTGTCA+TGG | + | chr3.1:82732043-82732062 | None:intergenic | 40.0% | |
| GTTTCATGGATGCAGTTTGT+TGG | - | chr3.1:82731369-82731388 | MS.gene32786:intron | 40.0% | |
| TGAAGAGTGGCTCAAAAGAA+TGG | - | chr3.1:82732709-82732728 | MS.gene32786:intron | 40.0% | |
| ! | TCAACCATTGGCTGGTAAAT+GGG | - | chr3.1:82732548-82732567 | MS.gene32786:CDS | 40.0% |
| !! | ACATCAGTACTGACTGCAAT+AGG | + | chr3.1:82730761-82730780 | None:intergenic | 40.0% |
| ACAGTTCTTGATGTCGGATG+CGG | - | chr3.1:82731579-82731598 | MS.gene32786:intron | 45.0% | |
| ACGTGTGAGTCTTCTGATGA+CGG | + | chr3.1:82730559-82730578 | None:intergenic | 45.0% | |
| AGCATTTGCCTACCACTTTG+AGG | - | chr3.1:82732140-82732159 | MS.gene32786:intron | 45.0% | |
| AGCCTCTTCCAATGTCTTTG+AGG | + | chr3.1:82731505-82731524 | None:intergenic | 45.0% | |
| AGTGGTAGGCAAATGCTTTG+TGG | + | chr3.1:82732137-82732156 | None:intergenic | 45.0% | |
| ATTGCAGATTCCTGTAACCC+TGG | + | chr3.1:82731649-82731668 | None:intergenic | 45.0% | |
| CTCTTCTGCCTCAAAGACAT+TGG | - | chr3.1:82731494-82731513 | MS.gene32786:intron | 45.0% | |
| GAAAGCTGAAGTTCAGCAGA+AGG | + | chr3.1:82730618-82730637 | None:intergenic | 45.0% | |
| GGAATATGGTGGTAGGGTAA+AGG | - | chr3.1:82731284-82731303 | MS.gene32786:CDS | 45.0% | |
| GTTTCCCATTTACCAGCCAA+TGG | + | chr3.1:82732555-82732574 | None:intergenic | 45.0% | |
| TACAGTAGTTCCAGGGTTAC+AGG | - | chr3.1:82731636-82731655 | MS.gene32786:intron | 45.0% | |
| TACTGTTGTCAACCATTGGC+TGG | - | chr3.1:82732540-82732559 | MS.gene32786:CDS | 45.0% | |
| TCCAACTGGATGAAAGAGGA+TGG | - | chr3.1:82732087-82732106 | MS.gene32786:intron | 45.0% | |
| TCTCCAGTAGACAGTCCATT+TGG | + | chr3.1:82732795-82732814 | None:intergenic | 45.0% | |
| TGAACCAAGCATCAGCTTCA+CGG | + | chr3.1:82730511-82730530 | None:intergenic | 45.0% | |
| TGCCTCAAAGACATTGGAAG+AGG | - | chr3.1:82731500-82731519 | MS.gene32786:intron | 45.0% | |
| ! | GATTCATCAAGGGTGTGTGT+GGG | - | chr3.1:82730904-82730923 | MS.gene32786:intron | 45.0% |
| ! | GTCAACCATTGGCTGGTAAA+TGG | - | chr3.1:82732547-82732566 | MS.gene32786:CDS | 45.0% |
| ! | TGATTCATCAAGGGTGTGTG+TGG | - | chr3.1:82730903-82730922 | MS.gene32786:intron | 45.0% |
| ! | TTTTCACTGCCCTCTTGTCA+GGG | - | chr3.1:82731854-82731873 | MS.gene32786:CDS | 45.0% |
| ! | TTTTTCACTGCCCTCTTGTC+AGG | - | chr3.1:82731853-82731872 | MS.gene32786:CDS | 45.0% |
| !! | CTACCAAATGGACTGTCTAC+TGG | - | chr3.1:82732789-82732808 | MS.gene32786:CDS | 45.0% |
| !! | TTCACAGGTGTTTTTGTCCG+TGG | - | chr3.1:82731222-82731241 | MS.gene32786:CDS | 45.0% |
| ACACTACGCACAAACCAGGT+TGG | - | chr3.1:82732573-82732592 | MS.gene32786:CDS | 50.0% | |
| GCCATCCTCTTTCATCCAGT+TGG | + | chr3.1:82732091-82732110 | None:intergenic | 50.0% | |
| GGAAACACTACGCACAAACC+AGG | - | chr3.1:82732569-82732588 | MS.gene32786:CDS | 50.0% | |
| GTGTGTGTGGGATGAATGGT+AGG | - | chr3.1:82730916-82730935 | MS.gene32786:intron | 50.0% | |
| TCTTGATGTCGGATGCGGTT+GGG | - | chr3.1:82731584-82731603 | MS.gene32786:intron | 50.0% | |
| TTCTTGATGTCGGATGCGGT+TGG | - | chr3.1:82731583-82731602 | MS.gene32786:intron | 50.0% | |
| ! | AAGGGTGTGTGTGGGATGAA+TGG | - | chr3.1:82730912-82730931 | MS.gene32786:intron | 50.0% |
| !! | AGCTTCACGGTGGTGTTGTA+AGG | + | chr3.1:82730498-82730517 | None:intergenic | 50.0% |
| !! | AGTCTTCTGATGACGGCATC+AGG | + | chr3.1:82730552-82730571 | None:intergenic | 50.0% |
| !! | GTCTTCTGATGACGGCATCA+GGG | + | chr3.1:82730551-82730570 | None:intergenic | 50.0% |
| ACCAAGCATCAGCTTCACGG+TGG | + | chr3.1:82730508-82730527 | None:intergenic | 55.0% | |
| ACCACCGTGAAGCTGATGCT+TGG | - | chr3.1:82730504-82730523 | MS.gene32786:CDS | 55.0% | |
| CTTGATGTCGGATGCGGTTG+GGG | - | chr3.1:82731585-82731604 | MS.gene32786:intron | 55.0% | |
| GGAGCTGCAGCTGCAAAATG+TGG | - | chr3.1:82731875-82731894 | MS.gene32786:intron | 55.0% | |
| TGCTGCAGGCATAGTTCCTC+CGG | + | chr3.1:82732349-82732368 | None:intergenic | 55.0% | |
| TTGATGTCGGATGCGGTTGG+GGG | - | chr3.1:82731586-82731605 | MS.gene32786:intron | 55.0% | |
| AGCTGCAGCTCCCTGACAAG+AGG | + | chr3.1:82731867-82731886 | None:intergenic | 60.0% | |
| GCTGCAGCTCCCTGACAAGA+GGG | + | chr3.1:82731866-82731885 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82730474 | 82732901 | 82730474 | ID=MS.gene32786 |
| chr3.1 | mRNA | 82730474 | 82732901 | 82730474 | ID=MS.gene32786.t1;Parent=MS.gene32786 |
| chr3.1 | exon | 82732715 | 82732901 | 82732715 | ID=MS.gene32786.t1.exon1;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82732715 | 82732901 | 82732715 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82732523 | 82732631 | 82732523 | ID=MS.gene32786.t1.exon2;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82732523 | 82732631 | 82732523 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82731669 | 82731893 | 82731669 | ID=MS.gene32786.t1.exon3;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82731669 | 82731893 | 82731669 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82731401 | 82731500 | 82731401 | ID=MS.gene32786.t1.exon4;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82731401 | 82731500 | 82731401 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82731214 | 82731324 | 82731214 | ID=MS.gene32786.t1.exon5;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82731214 | 82731324 | 82731214 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82730986 | 82731069 | 82730986 | ID=MS.gene32786.t1.exon6;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82730986 | 82731069 | 82730986 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82730785 | 82730843 | 82730785 | ID=MS.gene32786.t1.exon7;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82730785 | 82730843 | 82730785 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| chr3.1 | exon | 82730474 | 82730666 | 82730474 | ID=MS.gene32786.t1.exon8;Parent=MS.gene32786.t1 |
| chr3.1 | CDS | 82730474 | 82730666 | 82730474 | ID=cds.MS.gene32786.t1;Parent=MS.gene32786.t1 |
| Gene Sequence |
| Protein sequence |
