Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066522.t1 | XP_003603178.2 | 94.4 | 302 | 17 | 0 | 1 | 302 | 4 | 305 | 2.10E-162 | 581.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066522.t1 | Q5C9L6 | 51.2 | 295 | 142 | 1 | 8 | 300 | 10 | 304 | 1.3e-85 | 317.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066522.t1 | I3S3W0 | 94.4 | 302 | 17 | 0 | 1 | 302 | 4 | 305 | 1.5e-162 | 581.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene066522 | 0.805097 | 1.57E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene066522 | 0.825643 | 4.19E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene066522 | 0.812148 | 4.90E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene066522 | 0.805643 | 1.21E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene066522 | 0.825383 | 4.83E-54 | -1.69E-46 |
| MS.gene05455 | MS.gene066522 | 0.802059 | 6.71E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene066522 | 0.815779 | 7.76E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene066522 | 0.812229 | 4.71E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37405 | MS.gene066522 | PPI |
| MS.gene32786 | MS.gene066522 | PPI |
| MS.gene066522 | MS.gene071549 | PPI |
| MS.gene066522 | MS.gene071552 | PPI |
| MS.gene014995 | MS.gene066522 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066522.t1 | MTR_3g104740 | 94.371 | 302 | 17 | 0 | 1 | 302 | 4 | 305 | 0.0 | 568 |
| MS.gene066522.t1 | MTR_1g073700 | 29.565 | 230 | 154 | 6 | 78 | 301 | 576 | 803 | 2.48e-21 | 94.7 |
| MS.gene066522.t1 | MTR_1g044520 | 25.789 | 190 | 136 | 4 | 78 | 264 | 540 | 727 | 2.44e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066522.t1 | AT4G33110 | 69.103 | 301 | 93 | 0 | 1 | 301 | 1 | 301 | 5.56e-165 | 462 |
| MS.gene066522.t1 | AT4G33110 | 69.103 | 301 | 93 | 0 | 1 | 301 | 1 | 301 | 5.56e-165 | 462 |
| MS.gene066522.t1 | AT4G33120 | 67.442 | 301 | 98 | 0 | 1 | 301 | 1 | 301 | 2.41e-159 | 448 |
| MS.gene066522.t1 | AT3G23480 | 31.579 | 190 | 124 | 5 | 78 | 264 | 168 | 354 | 7.04e-21 | 92.8 |
| MS.gene066522.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 169 | 356 | 6.30e-20 | 90.1 |
| MS.gene066522.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 7.00e-20 | 90.1 |
| MS.gene066522.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 7.00e-20 | 90.1 |
| MS.gene066522.t1 | AT3G23510 | 29.474 | 190 | 129 | 4 | 78 | 264 | 577 | 764 | 1.07e-19 | 89.7 |
| MS.gene066522.t1 | AT3G23530 | 28.947 | 190 | 130 | 4 | 78 | 264 | 577 | 764 | 1.81e-19 | 89.4 |
| MS.gene066522.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 137 | 333 | 2.55e-15 | 76.6 |
| MS.gene066522.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 100 | 296 | 2.77e-15 | 76.3 |
Find 58 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCGTAATGTTGAGATTT+TGG | 0.142343 | 3.3:+86139032 | None:intergenic |
| GAACTGTATGACCATCTTTC+AGG | 0.193403 | 3.3:+86138243 | None:intergenic |
| GTCAACCATTGGCTGGTAAA+TGG | 0.204557 | 3.3:-86137259 | MS.gene066522:CDS |
| TCTTTCTTTAAGCTGGTTCT+TGG | 0.257853 | 3.3:-86139002 | MS.gene066522:CDS |
| TACAGTAGTTCCAGGGTTAC+AGG | 0.312484 | 3.3:-86138170 | MS.gene066522:CDS |
| CCTGGAACTACTGTAATTCT+TGG | 0.323390 | 3.3:+86138178 | None:intergenic |
| ATTACAAGATACTTCTTTAC+CGG | 0.330934 | 3.3:-86137479 | MS.gene066522:CDS |
| AGAAATGATGAACGAATAAA+AGG | 0.335415 | 3.3:+86137696 | None:intergenic |
| CTTGATGTCGGATGCGGTTG+GGG | 0.363488 | 3.3:-86138221 | MS.gene066522:CDS |
| TCTTGATGTCGGATGCGGTT+GGG | 0.364766 | 3.3:-86138222 | MS.gene066522:CDS |
| AGTCTTCTGATGACGGCATC+AGG | 0.366796 | 3.3:+86139265 | None:intergenic |
| CCAAGAATTACAGTAGTTCC+AGG | 0.371781 | 3.3:-86138178 | MS.gene066522:CDS |
| TCAACCATTGGCTGGTAAAT+GGG | 0.399932 | 3.3:-86137258 | MS.gene066522:CDS |
| AGAAAGTACAGTGAGCAAAT+TGG | 0.401458 | 3.3:+86139167 | None:intergenic |
| ACCTACCTCTTTCTTTAAGC+TGG | 0.401709 | 3.3:-86139009 | MS.gene066522:CDS |
| AGCCTCTTCCAATGTCTTTG+AGG | 0.408387 | 3.3:+86138304 | None:intergenic |
| ACATCAGTACTGACTGCAAT+AGG | 0.444713 | 3.3:+86139056 | None:intergenic |
| TTCTTGATGTCGGATGCGGT+TGG | 0.446691 | 3.3:-86138223 | MS.gene066522:CDS |
| AGACATTAGTACATTTGAAA+TGG | 0.457001 | 3.3:-86137895 | MS.gene066522:CDS |
| AGCTTCACGGTGGTGTTGTA+AGG | 0.461791 | 3.3:+86139319 | None:intergenic |
| ATTGCAGATTCCTGTAACCC+TGG | 0.462607 | 3.3:+86138160 | None:intergenic |
| GCCATCCTCTTTCATCCAGT+TGG | 0.466674 | 3.3:+86137718 | None:intergenic |
| CTCTTCTGCCTCAAAGACAT+TGG | 0.471861 | 3.3:-86138312 | MS.gene066522:CDS |
| TGCTGCAGGCATAGTTCCTC+CGG | 0.476336 | 3.3:+86137460 | None:intergenic |
| AGCATTTGCCTACCACTTTG+AGG | 0.477976 | 3.3:-86137666 | MS.gene066522:intron |
| TCTAACCTCAAACATTTCAA+TGG | 0.479904 | 3.3:+86137848 | None:intergenic |
| GTTGGAATATGCTGAATTGT+TGG | 0.480884 | 3.3:-86137215 | MS.gene066522:CDS |
| TTCTCAAGAAGATATCCAAC+TGG | 0.482343 | 3.3:-86137733 | MS.gene066522:CDS |
| AAGAACCAGCTTAAAGAAAG+AGG | 0.482405 | 3.3:+86139004 | None:intergenic |
| TTGGAAACAACCTCAAATAC+AGG | 0.508399 | 3.3:-86138983 | MS.gene066522:intron |
| ACAGTTCTTGATGTCGGATG+CGG | 0.517068 | 3.3:-86138227 | MS.gene066522:CDS |
| TACTATTGTCAACCATTGGC+TGG | 0.520020 | 3.3:-86137266 | MS.gene066522:CDS |
| CAATTCAGCATATTCCAACC+TGG | 0.527955 | 3.3:+86137219 | None:intergenic |
| ACCACCGTGAAGCTGATGCT+TGG | 0.540117 | 3.3:-86139310 | MS.gene066522:CDS |
| TGCCTCAAAGACATTGGAAG+AGG | 0.542100 | 3.3:-86138306 | MS.gene066522:CDS |
| GAAAGCTGAAGTTCAGCAGA+AGG | 0.542654 | 3.3:+86139199 | None:intergenic |
| TGAACCAAGCATCAGCTTCA+CGG | 0.542958 | 3.3:+86139306 | None:intergenic |
| GTTTCCCATTTACCAGCCAA+TGG | 0.543039 | 3.3:+86137254 | None:intergenic |
| GATATCCAACTGGATGAAAG+AGG | 0.555708 | 3.3:-86137723 | MS.gene066522:CDS |
| AGTGGTAGGCAAATGCTTTG+TGG | 0.556397 | 3.3:+86137672 | None:intergenic |
| TAAAGAAGTAGATTTGCTGC+AGG | 0.572831 | 3.3:+86137446 | None:intergenic |
| ACACTACGCACAAACCAGGT+TGG | 0.573900 | 3.3:-86137233 | MS.gene066522:CDS |
| CAAGAATTACAGTAGTTCCA+GGG | 0.581678 | 3.3:-86138177 | MS.gene066522:CDS |
| GAAGTTTACCTCAAAGTGGT+AGG | 0.587833 | 3.3:+86137658 | None:intergenic |
| ATGTTACTATTGTCAACCAT+TGG | 0.590024 | 3.3:-86137270 | MS.gene066522:CDS |
| GAGAGATCAAACCTGAAAGA+TGG | 0.590354 | 3.3:-86138254 | MS.gene066522:CDS |
| GGTCATACAGTTCTTGATGT+CGG | 0.592044 | 3.3:-86138233 | MS.gene066522:CDS |
| GGAAACACTACGCACAAACC+AGG | 0.597454 | 3.3:-86137237 | MS.gene066522:CDS |
| ACGTGTGAGTCTTCTGATGA+CGG | 0.603178 | 3.3:+86139258 | None:intergenic |
| GGAGCTGCAGCTGCAAAATG+TGG | 0.607827 | 3.3:-86137931 | MS.gene066522:CDS |
| ACCAGCTTAAAGAAAGAGGT+AGG | 0.613974 | 3.3:+86139008 | None:intergenic |
| TCCAACTGGATGAAAGAGGA+TGG | 0.623823 | 3.3:-86137719 | MS.gene066522:CDS |
| TTGATGTCGGATGCGGTTGG+GGG | 0.625116 | 3.3:-86138220 | MS.gene066522:CDS |
| ATATGAAGTTTACCTCAAAG+TGG | 0.632893 | 3.3:+86137654 | None:intergenic |
| GTCTTCTGATGACGGCATCA+GGG | 0.634408 | 3.3:+86139266 | None:intergenic |
| ACAAGATACTTCTTTACCGG+AGG | 0.634907 | 3.3:-86137476 | MS.gene066522:CDS |
| AAGGCTTGTAAGAAGAACGA+AGG | 0.706263 | 3.3:+86139218 | None:intergenic |
| ACCAAGCATCAGCTTCACGG+TGG | 0.763639 | 3.3:+86139309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCTATATATAACAAAAT+CGG | + | chr3.3:86137403-86137422 | None:intergenic | 15.0% |
| !! | TTAAATTGTTTATCCAAATA+CGG | + | chr3.3:86137735-86137754 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCTATACAA+GGG | - | chr3.3:86137796-86137815 | MS.gene066522:intron | 15.0% |
| !! | TACAATATCAAGAAATATAC+CGG | + | chr3.3:86138445-86138464 | None:intergenic | 20.0% |
| !! | TGAACATTACATAAATCATA+AGG | + | chr3.3:86138179-86138198 | None:intergenic | 20.0% |
| !!! | GTATAAGTTATTTCTATACA+AGG | - | chr3.3:86137795-86137814 | MS.gene066522:intron | 20.0% |
| ! | AAACTATATGAAATGCACAA+TGG | + | chr3.3:86138481-86138500 | None:intergenic | 25.0% |
| ! | AGAAATGATGAACGAATAAA+AGG | + | chr3.3:86138851-86138870 | None:intergenic | 25.0% |
| ! | AGAATCATGACGAAATATAA+AGG | + | chr3.3:86139213-86139232 | None:intergenic | 25.0% |
| ! | AGACATTAGTACATTTGAAA+TGG | - | chr3.3:86138649-86138668 | MS.gene066522:intron | 25.0% |
| ! | ATGTTCATATTTGTATGAAC+TGG | - | chr3.3:86138192-86138211 | MS.gene066522:CDS | 25.0% |
| ! | ATTACAAGATACTTCTTTAC+CGG | - | chr3.3:86139065-86139084 | MS.gene066522:CDS | 25.0% |
| ! | CTCAAATAAATCAAGTCAAA+CGG | - | chr3.3:86137980-86137999 | MS.gene066522:intron | 25.0% |
| ! | CTTAAAAATACCTGTATTTG+AGG | + | chr3.3:86137574-86137593 | None:intergenic | 25.0% |
| ! | CTTATACAATAAGCTGAAAA+CGG | - | chr3.3:86137883-86137902 | MS.gene066522:CDS | 25.0% |
| ! | GATGTAAAATGATTGTTTCA+TGG | - | chr3.3:86138093-86138112 | MS.gene066522:intron | 25.0% |
| ! | GCTTTACACAACAAAATTAT+CGG | + | chr3.3:86139191-86139210 | None:intergenic | 25.0% |
| ! | TATATTACTAAGACCGTATT+TGG | - | chr3.3:86137719-86137738 | MS.gene066522:CDS | 25.0% |
| ! | TCACTTGTAATTGAATTCTT+TGG | - | chr3.3:86139235-86139254 | MS.gene066522:CDS | 25.0% |
| !! | AATCATTTTACATCGCATTA+AGG | + | chr3.3:86138087-86138106 | None:intergenic | 25.0% |
| !! | AATTCGTAATGTTGAGATTT+TGG | + | chr3.3:86137515-86137534 | None:intergenic | 25.0% |
| !! | ATTCGTAATGTTGAGATTTT+GGG | + | chr3.3:86137514-86137533 | None:intergenic | 25.0% |
| !! | ATTTTCCATTGAAATGTTTG+AGG | - | chr3.3:86138691-86138710 | MS.gene066522:intron | 25.0% |
| !! | GATTTATTTGAGTTTATCCA+CGG | + | chr3.3:86137972-86137991 | None:intergenic | 25.0% |
| !!! | AGAACTCAATTAGTCTTATT+AGG | + | chr3.3:86138975-86138994 | None:intergenic | 25.0% |
| !!! | CAATTAGTCTTATTAGGTAT+TGG | + | chr3.3:86138969-86138988 | None:intergenic | 25.0% |
| AATAAGCTGAAAACGGTTTA+TGG | - | chr3.3:86137890-86137909 | MS.gene066522:CDS | 30.0% | |
| AGGACAAAAATGAAGATGAT+TGG | - | chr3.3:86139042-86139061 | MS.gene066522:CDS | 30.0% | |
| ATATGAAGTTTACCTCAAAG+TGG | + | chr3.3:86138893-86138912 | None:intergenic | 30.0% | |
| ATGTTACTATTGTCAACCAT+TGG | - | chr3.3:86139274-86139293 | MS.gene066522:CDS | 30.0% | |
| CTACATAATTCAAGCTTACT+TGG | + | chr3.3:86139127-86139146 | None:intergenic | 30.0% | |
| TCTAACCTCAAACATTTCAA+TGG | + | chr3.3:86138699-86138718 | None:intergenic | 30.0% | |
| ! | ACTATCTTTAAGGAATATGG+TGG | - | chr3.3:86138003-86138022 | MS.gene066522:intron | 30.0% |
| ! | ATCTAAGAACTGATTCATCA+AGG | - | chr3.3:86137623-86137642 | MS.gene066522:intron | 30.0% |
| ! | ATGATTTGCAAGACAAGTAT+TGG | + | chr3.3:86138544-86138563 | None:intergenic | 30.0% |
| ! | GACTCAAAAAGCTTTTATTG+AGG | - | chr3.3:86138412-86138431 | MS.gene066522:intron | 30.0% |
| ! | TACTTGCTACTTATACATGT+AGG | - | chr3.3:86139022-86139041 | MS.gene066522:CDS | 30.0% |
| ! | TCTAAGAACTGATTCATCAA+GGG | - | chr3.3:86137624-86137643 | MS.gene066522:intron | 30.0% |
| !! | ATGTTTGAGGTTAGATTTTG+TGG | - | chr3.3:86138704-86138723 | MS.gene066522:intron | 30.0% |
| !! | TGTTTGAGGTTAGATTTTGT+GGG | - | chr3.3:86138705-86138724 | MS.gene066522:intron | 30.0% |
| !!! | AATAAAAGCTTTTTGAGTCG+TGG | + | chr3.3:86138411-86138430 | None:intergenic | 30.0% |
| AAAACACCTGTGAGACTATT+AGG | + | chr3.3:86137946-86137965 | None:intergenic | 35.0% | |
| AAGAACCAGCTTAAAGAAAG+AGG | + | chr3.3:86137543-86137562 | None:intergenic | 35.0% | |
| CAAACTGAGATAGTCAACTA+AGG | + | chr3.3:86138920-86138939 | None:intergenic | 35.0% | |
| CAAGAATTACAGTAGTTCCA+GGG | - | chr3.3:86138367-86138386 | MS.gene066522:intron | 35.0% | |
| GGTACTACTGCAATACTATT+GGG | + | chr3.3:86139170-86139189 | None:intergenic | 35.0% | |
| GTGTATAGCTTAACTGCATT+GGG | - | chr3.3:86137687-86137706 | MS.gene066522:CDS | 35.0% | |
| GTTGGAATATGCTGAATTGT+TGG | - | chr3.3:86139329-86139348 | MS.gene066522:CDS | 35.0% | |
| TGCAGTTAAGCTATACACAA+AGG | + | chr3.3:86137685-86137704 | None:intergenic | 35.0% | |
| TGTGTATAGCTTAACTGCAT+TGG | - | chr3.3:86137686-86137705 | MS.gene066522:CDS | 35.0% | |
| TTCTCAAGAAGATATCCAAC+TGG | - | chr3.3:86138811-86138830 | MS.gene066522:intron | 35.0% | |
| TTGGAAACAACCTCAAATAC+AGG | - | chr3.3:86137561-86137580 | MS.gene066522:intron | 35.0% | |
| ! | AGAAAGTACAGTGAGCAAAT+TGG | + | chr3.3:86137380-86137399 | None:intergenic | 35.0% |
| ! | CGGACTATCTTTAAGGAATA+TGG | - | chr3.3:86138000-86138019 | MS.gene066522:intron | 35.0% |
| ! | CTTTAAGGAATATGGTGGTA+GGG | - | chr3.3:86138008-86138027 | MS.gene066522:intron | 35.0% |
| ! | CTTTTATTGAGGAGAAATGC+CGG | - | chr3.3:86138423-86138442 | MS.gene066522:intron | 35.0% |
| ! | TCTTTAAGGAATATGGTGGT+AGG | - | chr3.3:86138007-86138026 | MS.gene066522:intron | 35.0% |
| ! | TCTTTCTTTAAGCTGGTTCT+TGG | - | chr3.3:86137542-86137561 | MS.gene066522:intron | 35.0% |
| !! | AATTCTTTGGTGATGTGTGA+AGG | - | chr3.3:86139248-86139267 | MS.gene066522:CDS | 35.0% |
| !! | AGTCAAACGGACTATCTTTA+AGG | - | chr3.3:86137993-86138012 | MS.gene066522:intron | 35.0% |
| !! | TAAAGAAGTAGATTTGCTGC+AGG | + | chr3.3:86139101-86139120 | None:intergenic | 35.0% |
| !!! | TGATGCTTTTTCAGCTTTAC+AGG | - | chr3.3:86137460-86137479 | MS.gene066522:CDS | 35.0% |
| AAGGCTTGTAAGAAGAACGA+AGG | + | chr3.3:86137329-86137348 | None:intergenic | 40.0% | |
| ACAAGATACTTCTTTACCGG+AGG | - | chr3.3:86139068-86139087 | MS.gene066522:CDS | 40.0% | |
| ACCAGCTTAAAGAAAGAGGT+AGG | + | chr3.3:86137539-86137558 | None:intergenic | 40.0% | |
| ACCTACCTCTTTCTTTAAGC+TGG | - | chr3.3:86137535-86137554 | MS.gene066522:intron | 40.0% | |
| ACGGTTTATGGACATGTCAT+AGG | - | chr3.3:86137902-86137921 | MS.gene066522:CDS | 40.0% | |
| CAATTCAGCATATTCCAACC+TGG | + | chr3.3:86139328-86139347 | None:intergenic | 40.0% | |
| CCAAGAATTACAGTAGTTCC+AGG | - | chr3.3:86138366-86138385 | MS.gene066522:intron | 40.0% | |
| CCTGGAACTACTGTAATTCT+TGG | + | chr3.3:86138369-86138388 | None:intergenic | 40.0% | |
| CGGTACTACTGCAATACTAT+TGG | + | chr3.3:86139171-86139190 | None:intergenic | 40.0% | |
| GAACTGTATGACCATCTTTC+AGG | + | chr3.3:86138304-86138323 | None:intergenic | 40.0% | |
| GAAGTTTACCTCAAAGTGGT+AGG | + | chr3.3:86138889-86138908 | None:intergenic | 40.0% | |
| GAGAGATCAAACCTGAAAGA+TGG | - | chr3.3:86138290-86138309 | MS.gene066522:CDS | 40.0% | |
| GATATCCAACTGGATGAAAG+AGG | - | chr3.3:86138821-86138840 | MS.gene066522:intron | 40.0% | |
| GGTCATACAGTTCTTGATGT+CGG | - | chr3.3:86138311-86138330 | MS.gene066522:CDS | 40.0% | |
| GTTCTTCATATGCTGTGTCA+TGG | + | chr3.3:86138781-86138800 | None:intergenic | 40.0% | |
| GTTTCATGGATGCAGTTTGT+TGG | - | chr3.3:86138107-86138126 | MS.gene066522:intron | 40.0% | |
| TACTATTGTCAACCATTGGC+TGG | - | chr3.3:86139278-86139297 | MS.gene066522:CDS | 40.0% | |
| ! | TCAACCATTGGCTGGTAAAT+GGG | - | chr3.3:86139286-86139305 | MS.gene066522:CDS | 40.0% |
| !! | ACATCAGTACTGACTGCAAT+AGG | + | chr3.3:86137491-86137510 | None:intergenic | 40.0% |
| ACAGTTCTTGATGTCGGATG+CGG | - | chr3.3:86138317-86138336 | MS.gene066522:CDS | 45.0% | |
| ACGTGTGAGTCTTCTGATGA+CGG | + | chr3.3:86137289-86137308 | None:intergenic | 45.0% | |
| AGCATTTGCCTACCACTTTG+AGG | - | chr3.3:86138878-86138897 | MS.gene066522:intron | 45.0% | |
| AGCCTCTTCCAATGTCTTTG+AGG | + | chr3.3:86138243-86138262 | None:intergenic | 45.0% | |
| AGTGGTAGGCAAATGCTTTG+TGG | + | chr3.3:86138875-86138894 | None:intergenic | 45.0% | |
| ATTGCAGATTCCTGTAACCC+TGG | + | chr3.3:86138387-86138406 | None:intergenic | 45.0% | |
| CTCTTCTGCCTCAAAGACAT+TGG | - | chr3.3:86138232-86138251 | MS.gene066522:CDS | 45.0% | |
| GAAAGCTGAAGTTCAGCAGA+AGG | + | chr3.3:86137348-86137367 | None:intergenic | 45.0% | |
| GGAATATGGTGGTAGGGTAA+AGG | - | chr3.3:86138014-86138033 | MS.gene066522:intron | 45.0% | |
| GTTCTGCCTAATAGTCTCAC+AGG | - | chr3.3:86137937-86137956 | MS.gene066522:intron | 45.0% | |
| GTTTCCCATTTACCAGCCAA+TGG | + | chr3.3:86139293-86139312 | None:intergenic | 45.0% | |
| TACAGTAGTTCCAGGGTTAC+AGG | - | chr3.3:86138374-86138393 | MS.gene066522:intron | 45.0% | |
| TCCAACTGGATGAAAGAGGA+TGG | - | chr3.3:86138825-86138844 | MS.gene066522:intron | 45.0% | |
| TGAACCAAGCATCAGCTTCA+CGG | + | chr3.3:86137241-86137260 | None:intergenic | 45.0% | |
| TGCCTCAAAGACATTGGAAG+AGG | - | chr3.3:86138238-86138257 | MS.gene066522:CDS | 45.0% | |
| ! | GATTCATCAAGGGTGTGTGT+GGG | - | chr3.3:86137634-86137653 | MS.gene066522:intron | 45.0% |
| ! | GTCAACCATTGGCTGGTAAA+TGG | - | chr3.3:86139285-86139304 | MS.gene066522:CDS | 45.0% |
| ! | TGATTCATCAAGGGTGTGTG+TGG | - | chr3.3:86137633-86137652 | MS.gene066522:intron | 45.0% |
| ! | TTTTCACTGCCCTCTTGTCA+GGG | - | chr3.3:86138592-86138611 | MS.gene066522:intron | 45.0% |
| ! | TTTTTCACTGCCCTCTTGTC+AGG | - | chr3.3:86138591-86138610 | MS.gene066522:intron | 45.0% |
| ACACTACGCACAAACCAGGT+TGG | - | chr3.3:86139311-86139330 | MS.gene066522:CDS | 50.0% | |
| GCCATCCTCTTTCATCCAGT+TGG | + | chr3.3:86138829-86138848 | None:intergenic | 50.0% | |
| GGAAACACTACGCACAAACC+AGG | - | chr3.3:86139307-86139326 | MS.gene066522:CDS | 50.0% | |
| GTGTGTGTGGGATGAATGGT+AGG | - | chr3.3:86137646-86137665 | MS.gene066522:intron | 50.0% | |
| TCTTGATGTCGGATGCGGTT+GGG | - | chr3.3:86138322-86138341 | MS.gene066522:CDS | 50.0% | |
| TTCTTGATGTCGGATGCGGT+TGG | - | chr3.3:86138321-86138340 | MS.gene066522:CDS | 50.0% | |
| ! | AAGGGTGTGTGTGGGATGAA+TGG | - | chr3.3:86137642-86137661 | MS.gene066522:intron | 50.0% |
| !! | AGCTTCACGGTGGTGTTGTA+AGG | + | chr3.3:86137228-86137247 | None:intergenic | 50.0% |
| !! | AGTCTTCTGATGACGGCATC+AGG | + | chr3.3:86137282-86137301 | None:intergenic | 50.0% |
| !! | CTCACAGGTGTTTTTGTCCG+TGG | - | chr3.3:86137952-86137971 | MS.gene066522:intron | 50.0% |
| !! | GTCTTCTGATGACGGCATCA+GGG | + | chr3.3:86137281-86137300 | None:intergenic | 50.0% |
| ACCAAGCATCAGCTTCACGG+TGG | + | chr3.3:86137238-86137257 | None:intergenic | 55.0% | |
| ACCACCGTGAAGCTGATGCT+TGG | - | chr3.3:86137234-86137253 | MS.gene066522:CDS | 55.0% | |
| CTTGATGTCGGATGCGGTTG+GGG | - | chr3.3:86138323-86138342 | MS.gene066522:CDS | 55.0% | |
| GGAGCTGCAGCTGCAAAATG+TGG | - | chr3.3:86138613-86138632 | MS.gene066522:intron | 55.0% | |
| TGCTGCAGGCATAGTTCCTC+CGG | + | chr3.3:86139087-86139106 | None:intergenic | 55.0% | |
| TTGATGTCGGATGCGGTTGG+GGG | - | chr3.3:86138324-86138343 | MS.gene066522:CDS | 55.0% | |
| AGCTGCAGCTCCCTGACAAG+AGG | + | chr3.3:86138605-86138624 | None:intergenic | 60.0% | |
| GCTGCAGCTCCCTGACAAGA+GGG | + | chr3.3:86138604-86138623 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86137204 | 86139362 | 86137204 | ID=MS.gene066522 |
| chr3.3 | mRNA | 86137204 | 86139362 | 86137204 | ID=MS.gene066522.t1;Parent=MS.gene066522 |
| chr3.3 | exon | 86139176 | 86139362 | 86139176 | ID=MS.gene066522.t1.exon1;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86139176 | 86139362 | 86139176 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| chr3.3 | exon | 86138984 | 86139092 | 86138984 | ID=MS.gene066522.t1.exon2;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86138984 | 86139092 | 86138984 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| chr3.3 | exon | 86138122 | 86138346 | 86138122 | ID=MS.gene066522.t1.exon3;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86138122 | 86138346 | 86138122 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| chr3.3 | exon | 86137854 | 86137953 | 86137854 | ID=MS.gene066522.t1.exon4;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86137854 | 86137953 | 86137854 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| chr3.3 | exon | 86137667 | 86137777 | 86137667 | ID=MS.gene066522.t1.exon5;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86137667 | 86137777 | 86137667 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| chr3.3 | exon | 86137439 | 86137522 | 86137439 | ID=MS.gene066522.t1.exon6;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86137439 | 86137522 | 86137439 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| chr3.3 | exon | 86137204 | 86137296 | 86137204 | ID=MS.gene066522.t1.exon7;Parent=MS.gene066522.t1 |
| chr3.3 | CDS | 86137204 | 86137296 | 86137204 | ID=cds.MS.gene066522.t1;Parent=MS.gene066522.t1 |
| Gene Sequence |
| Protein sequence |
