Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071549.t1 | XP_003603178.2 | 96.9 | 291 | 9 | 0 | 1 | 291 | 4 | 294 | 1.40E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071549.t1 | Q5C9L6 | 51.7 | 286 | 136 | 1 | 8 | 291 | 10 | 295 | 4.1e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071549.t1 | I3S3W0 | 96.9 | 291 | 9 | 0 | 1 | 291 | 4 | 294 | 1.0e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene071549 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene071549 | 0.826629 | 2.44E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene071549 | 0.81821 | 2.21E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene071549 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene071549 | 0.827486 | 1.52E-54 | -1.69E-46 |
| MS.gene05455 | MS.gene071549 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene071549 | 0.813993 | 1.93E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene071549 | 0.810609 | 1.06E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene071549 | 0.802337 | 5.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014995 | MS.gene071549 | PPI |
| MS.gene071549 | MS.gene071552 | PPI |
| MS.gene071552 | MS.gene071549 | PPI |
| MS.gene066522 | MS.gene071549 | PPI |
| MS.gene37405 | MS.gene071549 | PPI |
| MS.gene32786 | MS.gene071549 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071549.t1 | MTR_3g104740 | 96.907 | 291 | 9 | 0 | 1 | 291 | 4 | 294 | 0.0 | 595 |
| MS.gene071549.t1 | MTR_1g073700 | 29.680 | 219 | 147 | 5 | 78 | 291 | 576 | 792 | 1.33e-21 | 95.1 |
| MS.gene071549.t1 | MTR_1g044520 | 25.789 | 190 | 136 | 4 | 78 | 264 | 540 | 727 | 1.56e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071549.t1 | AT4G33110 | 70.447 | 291 | 86 | 0 | 1 | 291 | 1 | 291 | 3.32e-163 | 457 |
| MS.gene071549.t1 | AT4G33110 | 70.447 | 291 | 86 | 0 | 1 | 291 | 1 | 291 | 3.32e-163 | 457 |
| MS.gene071549.t1 | AT4G33120 | 68.729 | 291 | 91 | 0 | 1 | 291 | 1 | 291 | 7.63e-158 | 444 |
| MS.gene071549.t1 | AT3G23480 | 31.579 | 190 | 124 | 5 | 78 | 264 | 168 | 354 | 5.44e-21 | 92.8 |
| MS.gene071549.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 4.76e-20 | 90.1 |
| MS.gene071549.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 196 | 383 | 4.76e-20 | 90.1 |
| MS.gene071549.t1 | AT3G23470 | 28.947 | 190 | 130 | 4 | 78 | 264 | 169 | 356 | 4.99e-20 | 90.1 |
| MS.gene071549.t1 | AT3G23510 | 29.474 | 190 | 129 | 4 | 78 | 264 | 577 | 764 | 5.99e-20 | 90.5 |
| MS.gene071549.t1 | AT3G23530 | 28.947 | 190 | 130 | 4 | 78 | 264 | 577 | 764 | 9.30e-20 | 89.7 |
| MS.gene071549.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 137 | 333 | 1.72e-15 | 76.6 |
| MS.gene071549.t1 | AT3G23480 | 27.363 | 201 | 138 | 6 | 68 | 264 | 100 | 296 | 1.98e-15 | 76.6 |
Find 55 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCGTAATGTTGAGATTT+TGG | 0.142343 | 3.3:+86175626 | None:intergenic |
| GAACTGTATGACCATCTTTC+AGG | 0.193403 | 3.3:+86174839 | None:intergenic |
| GTCAACCATTGGCTGGTAAA+TGG | 0.204557 | 3.3:-86173855 | MS.gene071549:CDS |
| TCTTTCTTTAAGCTGGTTCT+TGG | 0.257853 | 3.3:-86175596 | MS.gene071549:CDS |
| TACAGTAGTTCCAGGGTTAC+AGG | 0.312484 | 3.3:-86174766 | MS.gene071549:CDS |
| CCTGGAACTACTGTAATTCT+TGG | 0.323390 | 3.3:+86174774 | None:intergenic |
| ATTACAAGATACTTCTTTAC+CGG | 0.330934 | 3.3:-86174075 | MS.gene071549:CDS |
| AGAAATGATGAACGAATAAA+AGG | 0.335415 | 3.3:+86174292 | None:intergenic |
| CTTGATGTCGGATGCGGTTG+GGG | 0.363488 | 3.3:-86174817 | MS.gene071549:CDS |
| TCTTGATGTCGGATGCGGTT+GGG | 0.364766 | 3.3:-86174818 | MS.gene071549:CDS |
| AGTCTTCTGATGACGGCATC+AGG | 0.366796 | 3.3:+86175859 | None:intergenic |
| CCAAGAATTACAGTAGTTCC+AGG | 0.371781 | 3.3:-86174774 | MS.gene071549:CDS |
| TCAACCATTGGCTGGTAAAT+GGG | 0.399932 | 3.3:-86173854 | MS.gene071549:CDS |
| AGAAAGTACAGTGAGCAAAT+TGG | 0.401458 | 3.3:+86175761 | None:intergenic |
| ACCTACCTCTTTCTTTAAGC+TGG | 0.401709 | 3.3:-86175603 | MS.gene071549:CDS |
| AGCCTCTTCCAATGTCTTTG+AGG | 0.408387 | 3.3:+86174900 | None:intergenic |
| ACATCAGTACTGACTGCAAT+AGG | 0.444713 | 3.3:+86175650 | None:intergenic |
| TTCTTGATGTCGGATGCGGT+TGG | 0.446691 | 3.3:-86174819 | MS.gene071549:CDS |
| AGACATTAGTACATTTGAAA+TGG | 0.457001 | 3.3:-86174491 | MS.gene071549:CDS |
| AGCTTCACGGTGGTGTTGTA+AGG | 0.461791 | 3.3:+86175913 | None:intergenic |
| ATTGCAGATTCCTGTAACCC+TGG | 0.462607 | 3.3:+86174756 | None:intergenic |
| GCCATCCTCTTTCATCCAGT+TGG | 0.466674 | 3.3:+86174314 | None:intergenic |
| CTCTTCTGCCTCAAAGACAT+TGG | 0.471861 | 3.3:-86174908 | MS.gene071549:CDS |
| TGCTGCAGGCATAGTTCCTC+CGG | 0.476336 | 3.3:+86174056 | None:intergenic |
| AGCATTTGCCTACCACTTTG+AGG | 0.477976 | 3.3:-86174262 | MS.gene071549:intron |
| TCTAACCTCAAACATTTCAA+TGG | 0.479904 | 3.3:+86174444 | None:intergenic |
| TTCTCAAGAAGATATCCAAC+TGG | 0.482343 | 3.3:-86174329 | MS.gene071549:CDS |
| AAGAACCAGCTTAAAGAAAG+AGG | 0.482405 | 3.3:+86175598 | None:intergenic |
| TTGGAAACAACCTCAAATAC+AGG | 0.508399 | 3.3:-86175577 | MS.gene071549:intron |
| ACAGTTCTTGATGTCGGATG+CGG | 0.517068 | 3.3:-86174823 | MS.gene071549:CDS |
| TACTATTGTCAACCATTGGC+TGG | 0.520020 | 3.3:-86173862 | MS.gene071549:CDS |
| ACCACCGTGAAGCTGATGCT+TGG | 0.540117 | 3.3:-86175904 | MS.gene071549:CDS |
| TGCCTCAAAGACATTGGAAG+AGG | 0.542100 | 3.3:-86174902 | MS.gene071549:CDS |
| GAAAGCTGAAGTTCAGCAGA+AGG | 0.542654 | 3.3:+86175793 | None:intergenic |
| TGAACCAAGCATCAGCTTCA+CGG | 0.542958 | 3.3:+86175900 | None:intergenic |
| GTTTCCCATTTACCAGCCAA+TGG | 0.543039 | 3.3:+86173850 | None:intergenic |
| GATATCCAACTGGATGAAAG+AGG | 0.555708 | 3.3:-86174319 | MS.gene071549:CDS |
| AGTGGTAGGCAAATGCTTTG+TGG | 0.556397 | 3.3:+86174268 | None:intergenic |
| TAAAGAAGTAGATTTGCTGC+AGG | 0.572831 | 3.3:+86174042 | None:intergenic |
| CAAGAATTACAGTAGTTCCA+GGG | 0.581678 | 3.3:-86174773 | MS.gene071549:CDS |
| GAAGTTTACCTCAAAGTGGT+AGG | 0.587833 | 3.3:+86174254 | None:intergenic |
| ATGTTACTATTGTCAACCAT+TGG | 0.590024 | 3.3:-86173866 | MS.gene071549:CDS |
| GAGAGATCAAACCTGAAAGA+TGG | 0.590354 | 3.3:-86174850 | MS.gene071549:CDS |
| GGTCATACAGTTCTTGATGT+CGG | 0.592044 | 3.3:-86174829 | MS.gene071549:CDS |
| GGAAACACTACGCACAAACC+AGG | 0.597454 | 3.3:-86173833 | None:intergenic |
| ACGTGTGAGTCTTCTGATGA+CGG | 0.603178 | 3.3:+86175852 | None:intergenic |
| GGAGCTGCAGCTGCAAAATG+TGG | 0.607827 | 3.3:-86174527 | MS.gene071549:CDS |
| ACCAGCTTAAAGAAAGAGGT+AGG | 0.613974 | 3.3:+86175602 | None:intergenic |
| TCCAACTGGATGAAAGAGGA+TGG | 0.623823 | 3.3:-86174315 | MS.gene071549:CDS |
| TTGATGTCGGATGCGGTTGG+GGG | 0.625116 | 3.3:-86174816 | MS.gene071549:CDS |
| ATATGAAGTTTACCTCAAAG+TGG | 0.632893 | 3.3:+86174250 | None:intergenic |
| GTCTTCTGATGACGGCATCA+GGG | 0.634408 | 3.3:+86175860 | None:intergenic |
| ACAAGATACTTCTTTACCGG+AGG | 0.634907 | 3.3:-86174072 | MS.gene071549:CDS |
| AAGGCTTGTAAGAAGAACGA+AGG | 0.706263 | 3.3:+86175812 | None:intergenic |
| ACCAAGCATCAGCTTCACGG+TGG | 0.763639 | 3.3:+86175903 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCTATATATAACAAAAT+CGG | + | chr3.3:86174033-86174052 | None:intergenic | 15.0% |
| !! | TTAAATTGTTTATCCAAATA+CGG | + | chr3.3:86174365-86174384 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCTATACAA+GGG | - | chr3.3:86174426-86174445 | MS.gene071549:intron | 15.0% |
| !! | TACAATATCAAGAAATATAC+CGG | + | chr3.3:86175073-86175092 | None:intergenic | 20.0% |
| !! | TGAACATTACATAAATCATA+AGG | + | chr3.3:86174807-86174826 | None:intergenic | 20.0% |
| !!! | GTATAAGTTATTTCTATACA+AGG | - | chr3.3:86174425-86174444 | MS.gene071549:intron | 20.0% |
| ! | AAACTATATGAAATGCACAA+TGG | + | chr3.3:86175109-86175128 | None:intergenic | 25.0% |
| ! | AGAAATGATGAACGAATAAA+AGG | + | chr3.3:86175479-86175498 | None:intergenic | 25.0% |
| ! | AGAATCATGACGAAATATAA+AGG | + | chr3.3:86175841-86175860 | None:intergenic | 25.0% |
| ! | AGACATTAGTACATTTGAAA+TGG | - | chr3.3:86175277-86175296 | MS.gene071549:intron | 25.0% |
| ! | ATGTTCATATTTGTATGAAC+TGG | - | chr3.3:86174820-86174839 | MS.gene071549:CDS | 25.0% |
| ! | ATTACAAGATACTTCTTTAC+CGG | - | chr3.3:86175693-86175712 | MS.gene071549:intron | 25.0% |
| ! | CTCAAATAAATCAAGTCAAA+CGG | - | chr3.3:86174609-86174628 | MS.gene071549:intron | 25.0% |
| ! | CTTAAAAATACCTGTATTTG+AGG | + | chr3.3:86174204-86174223 | None:intergenic | 25.0% |
| ! | CTTATACAATAAGCTGAAAA+CGG | - | chr3.3:86174513-86174532 | MS.gene071549:CDS | 25.0% |
| ! | GATGTAAAATGATTGTTTCA+TGG | - | chr3.3:86174721-86174740 | MS.gene071549:CDS | 25.0% |
| ! | GCTTTACACAACAAAATTAT+CGG | + | chr3.3:86175819-86175838 | None:intergenic | 25.0% |
| ! | TATATTACTAAGACCGTATT+TGG | - | chr3.3:86174349-86174368 | MS.gene071549:CDS | 25.0% |
| ! | TCACTTGTAATTGAATTCTT+TGG | - | chr3.3:86175863-86175882 | MS.gene071549:CDS | 25.0% |
| !! | AATCATTTTACATCGCATTA+AGG | + | chr3.3:86174715-86174734 | None:intergenic | 25.0% |
| !! | AATTCGTAATGTTGAGATTT+TGG | + | chr3.3:86174145-86174164 | None:intergenic | 25.0% |
| !! | ATTCGTAATGTTGAGATTTT+GGG | + | chr3.3:86174144-86174163 | None:intergenic | 25.0% |
| !! | ATTTTCCATTGAAATGTTTG+AGG | - | chr3.3:86175319-86175338 | MS.gene071549:intron | 25.0% |
| !! | GATTTATTTGAGTTTATCCA+CGG | + | chr3.3:86174601-86174620 | None:intergenic | 25.0% |
| !!! | AGAACTCAATTAGTCTTATT+AGG | + | chr3.3:86175603-86175622 | None:intergenic | 25.0% |
| !!! | CAATTAGTCTTATTAGGTAT+TGG | + | chr3.3:86175597-86175616 | None:intergenic | 25.0% |
| AATAAGCTGAAAACGGTTTA+TGG | - | chr3.3:86174520-86174539 | MS.gene071549:CDS | 30.0% | |
| AGGACAAAAATGAAGATGAT+TGG | - | chr3.3:86175670-86175689 | MS.gene071549:intron | 30.0% | |
| ATATGAAGTTTACCTCAAAG+TGG | + | chr3.3:86175521-86175540 | None:intergenic | 30.0% | |
| ATGTTACTATTGTCAACCAT+TGG | - | chr3.3:86175902-86175921 | MS.gene071549:CDS | 30.0% | |
| CTACATAATTCAAGCTTACT+TGG | + | chr3.3:86175755-86175774 | None:intergenic | 30.0% | |
| TCTAACCTCAAACATTTCAA+TGG | + | chr3.3:86175327-86175346 | None:intergenic | 30.0% | |
| ! | ACTATCTTTAAGGAATATGG+TGG | - | chr3.3:86174632-86174651 | MS.gene071549:intron | 30.0% |
| ! | ATCTAAGAACTGATTCATCA+AGG | - | chr3.3:86174253-86174272 | MS.gene071549:intron | 30.0% |
| ! | ATGATTTGCAAGACAAGTAT+TGG | + | chr3.3:86175172-86175191 | None:intergenic | 30.0% |
| ! | GACTCAAAAAGCTTTTATTG+AGG | - | chr3.3:86175040-86175059 | MS.gene071549:intron | 30.0% |
| ! | TACTTGCTACTTATACATGT+AGG | - | chr3.3:86175650-86175669 | MS.gene071549:CDS | 30.0% |
| ! | TCTAAGAACTGATTCATCAA+GGG | - | chr3.3:86174254-86174273 | MS.gene071549:intron | 30.0% |
| !! | ATGTTTGAGGTTAGATTTTG+TGG | - | chr3.3:86175332-86175351 | MS.gene071549:intron | 30.0% |
| !! | TGTTTGAGGTTAGATTTTGT+GGG | - | chr3.3:86175333-86175352 | MS.gene071549:intron | 30.0% |
| !!! | AATAAAAGCTTTTTGAGTCG+TGG | + | chr3.3:86175039-86175058 | None:intergenic | 30.0% |
| AAAACACCTGTGAGACTATT+AGG | + | chr3.3:86174575-86174594 | None:intergenic | 35.0% | |
| AAGAACCAGCTTAAAGAAAG+AGG | + | chr3.3:86174173-86174192 | None:intergenic | 35.0% | |
| CAAACTGAGATAGTCAACTA+AGG | + | chr3.3:86175548-86175567 | None:intergenic | 35.0% | |
| CAAGAATTACAGTAGTTCCA+GGG | - | chr3.3:86174995-86175014 | MS.gene071549:intron | 35.0% | |
| GGTACTACTGCAATACTATT+GGG | + | chr3.3:86175798-86175817 | None:intergenic | 35.0% | |
| GTGTATAGCTTAACTGCATT+GGG | - | chr3.3:86174317-86174336 | MS.gene071549:CDS | 35.0% | |
| TGCAGTTAAGCTATACACAA+AGG | + | chr3.3:86174315-86174334 | None:intergenic | 35.0% | |
| TGTGTATAGCTTAACTGCAT+TGG | - | chr3.3:86174316-86174335 | MS.gene071549:CDS | 35.0% | |
| TTCTCAAGAAGATATCCAAC+TGG | - | chr3.3:86175439-86175458 | MS.gene071549:intron | 35.0% | |
| TTGGAAACAACCTCAAATAC+AGG | - | chr3.3:86174191-86174210 | MS.gene071549:intron | 35.0% | |
| ! | AGAAAGTACAGTGAGCAAAT+TGG | + | chr3.3:86174010-86174029 | None:intergenic | 35.0% |
| ! | CGGACTATCTTTAAGGAATA+TGG | - | chr3.3:86174629-86174648 | MS.gene071549:intron | 35.0% |
| ! | CTTTAAGGAATATGGTGGTA+GGG | - | chr3.3:86174637-86174656 | MS.gene071549:intron | 35.0% |
| ! | CTTTTATTGAGGAGAAATGC+CGG | - | chr3.3:86175051-86175070 | MS.gene071549:intron | 35.0% |
| ! | TCTTTAAGGAATATGGTGGT+AGG | - | chr3.3:86174636-86174655 | MS.gene071549:intron | 35.0% |
| ! | TCTTTCTTTAAGCTGGTTCT+TGG | - | chr3.3:86174172-86174191 | MS.gene071549:intron | 35.0% |
| !! | AATTCTTTGGTGATGTGTGA+AGG | - | chr3.3:86175876-86175895 | MS.gene071549:CDS | 35.0% |
| !! | AGTCAAACGGACTATCTTTA+AGG | - | chr3.3:86174622-86174641 | MS.gene071549:intron | 35.0% |
| !! | TAAAGAAGTAGATTTGCTGC+AGG | + | chr3.3:86175729-86175748 | None:intergenic | 35.0% |
| !!! | TGATGCTTTTTCAGCTTTAC+AGG | - | chr3.3:86174090-86174109 | MS.gene071549:CDS | 35.0% |
| AAGGCTTGTAAGAAGAACGA+AGG | + | chr3.3:86173959-86173978 | None:intergenic | 40.0% | |
| ACAAGATACTTCTTTACCGG+AGG | - | chr3.3:86175696-86175715 | MS.gene071549:intron | 40.0% | |
| ACCAGCTTAAAGAAAGAGGT+AGG | + | chr3.3:86174169-86174188 | None:intergenic | 40.0% | |
| ACCTACCTCTTTCTTTAAGC+TGG | - | chr3.3:86174165-86174184 | MS.gene071549:intron | 40.0% | |
| ACGGTTTATGGACATGTCAT+AGG | - | chr3.3:86174532-86174551 | MS.gene071549:intron | 40.0% | |
| CCAAGAATTACAGTAGTTCC+AGG | - | chr3.3:86174994-86175013 | MS.gene071549:intron | 40.0% | |
| CCTGGAACTACTGTAATTCT+TGG | + | chr3.3:86174997-86175016 | None:intergenic | 40.0% | |
| CGGTACTACTGCAATACTAT+TGG | + | chr3.3:86175799-86175818 | None:intergenic | 40.0% | |
| GAACTGTATGACCATCTTTC+AGG | + | chr3.3:86174932-86174951 | None:intergenic | 40.0% | |
| GAAGTTTACCTCAAAGTGGT+AGG | + | chr3.3:86175517-86175536 | None:intergenic | 40.0% | |
| GAGAGATCAAACCTGAAAGA+TGG | - | chr3.3:86174918-86174937 | MS.gene071549:CDS | 40.0% | |
| GATATCCAACTGGATGAAAG+AGG | - | chr3.3:86175449-86175468 | MS.gene071549:intron | 40.0% | |
| GGTCATACAGTTCTTGATGT+CGG | - | chr3.3:86174939-86174958 | MS.gene071549:intron | 40.0% | |
| GTTCTTCATATGCTGTGTCA+TGG | + | chr3.3:86175409-86175428 | None:intergenic | 40.0% | |
| GTTTCATGGATGCAGTTTGT+TGG | - | chr3.3:86174735-86174754 | MS.gene071549:CDS | 40.0% | |
| TACTATTGTCAACCATTGGC+TGG | - | chr3.3:86175906-86175925 | MS.gene071549:CDS | 40.0% | |
| ! | TCAACCATTGGCTGGTAAAT+GGG | - | chr3.3:86175914-86175933 | MS.gene071549:CDS | 40.0% |
| !! | ACATCAGTACTGACTGCAAT+AGG | + | chr3.3:86174121-86174140 | None:intergenic | 40.0% |
| ACAGTTCTTGATGTCGGATG+CGG | - | chr3.3:86174945-86174964 | MS.gene071549:intron | 45.0% | |
| ACGTGTGAGTCTTCTGATGA+CGG | + | chr3.3:86173919-86173938 | None:intergenic | 45.0% | |
| AGCATTTGCCTACCACTTTG+AGG | - | chr3.3:86175506-86175525 | MS.gene071549:intron | 45.0% | |
| AGCCTCTTCCAATGTCTTTG+AGG | + | chr3.3:86174871-86174890 | None:intergenic | 45.0% | |
| AGTGGTAGGCAAATGCTTTG+TGG | + | chr3.3:86175503-86175522 | None:intergenic | 45.0% | |
| ATTGCAGATTCCTGTAACCC+TGG | + | chr3.3:86175015-86175034 | None:intergenic | 45.0% | |
| CTCTTCTGCCTCAAAGACAT+TGG | - | chr3.3:86174860-86174879 | MS.gene071549:CDS | 45.0% | |
| GAAAGCTGAAGTTCAGCAGA+AGG | + | chr3.3:86173978-86173997 | None:intergenic | 45.0% | |
| GGAATATGGTGGTAGGGTAA+AGG | - | chr3.3:86174643-86174662 | MS.gene071549:intron | 45.0% | |
| GTTCTGCCTAATAGTCTCAC+AGG | - | chr3.3:86174566-86174585 | MS.gene071549:intron | 45.0% | |
| GTTTCCCATTTACCAGCCAA+TGG | + | chr3.3:86175921-86175940 | None:intergenic | 45.0% | |
| TACAGTAGTTCCAGGGTTAC+AGG | - | chr3.3:86175002-86175021 | MS.gene071549:intron | 45.0% | |
| TCCAACTGGATGAAAGAGGA+TGG | - | chr3.3:86175453-86175472 | MS.gene071549:intron | 45.0% | |
| TGAACCAAGCATCAGCTTCA+CGG | + | chr3.3:86173871-86173890 | None:intergenic | 45.0% | |
| TGCCTCAAAGACATTGGAAG+AGG | - | chr3.3:86174866-86174885 | MS.gene071549:CDS | 45.0% | |
| ! | GATTCATCAAGGGTGTGTGT+GGG | - | chr3.3:86174264-86174283 | MS.gene071549:CDS | 45.0% |
| ! | GTCAACCATTGGCTGGTAAA+TGG | - | chr3.3:86175913-86175932 | MS.gene071549:CDS | 45.0% |
| ! | TGATTCATCAAGGGTGTGTG+TGG | - | chr3.3:86174263-86174282 | MS.gene071549:CDS | 45.0% |
| ! | TTTTCACTGCCCTCTTGTCA+GGG | - | chr3.3:86175220-86175239 | MS.gene071549:intron | 45.0% |
| ! | TTTTTCACTGCCCTCTTGTC+AGG | - | chr3.3:86175219-86175238 | MS.gene071549:intron | 45.0% |
| GCCATCCTCTTTCATCCAGT+TGG | + | chr3.3:86175457-86175476 | None:intergenic | 50.0% | |
| GTGTGTGTGGGATGAATGGT+AGG | - | chr3.3:86174276-86174295 | MS.gene071549:CDS | 50.0% | |
| TCTTGATGTCGGATGCGGTT+GGG | - | chr3.3:86174950-86174969 | MS.gene071549:intron | 50.0% | |
| TTCTTGATGTCGGATGCGGT+TGG | - | chr3.3:86174949-86174968 | MS.gene071549:intron | 50.0% | |
| ! | AAGGGTGTGTGTGGGATGAA+TGG | - | chr3.3:86174272-86174291 | MS.gene071549:CDS | 50.0% |
| !! | AGCTTCACGGTGGTGTTGTA+AGG | + | chr3.3:86173858-86173877 | None:intergenic | 50.0% |
| !! | AGTCTTCTGATGACGGCATC+AGG | + | chr3.3:86173912-86173931 | None:intergenic | 50.0% |
| !! | CTCACAGGTGTTTTTGTCCG+TGG | - | chr3.3:86174581-86174600 | MS.gene071549:intron | 50.0% |
| !! | GTCTTCTGATGACGGCATCA+GGG | + | chr3.3:86173911-86173930 | None:intergenic | 50.0% |
| ACCAAGCATCAGCTTCACGG+TGG | + | chr3.3:86173868-86173887 | None:intergenic | 55.0% | |
| ACCACCGTGAAGCTGATGCT+TGG | - | chr3.3:86173864-86173883 | MS.gene071549:CDS | 55.0% | |
| CTTGATGTCGGATGCGGTTG+GGG | - | chr3.3:86174951-86174970 | MS.gene071549:intron | 55.0% | |
| GGAGCTGCAGCTGCAAAATG+TGG | - | chr3.3:86175241-86175260 | MS.gene071549:intron | 55.0% | |
| TGCTGCAGGCATAGTTCCTC+CGG | + | chr3.3:86175715-86175734 | None:intergenic | 55.0% | |
| TTGATGTCGGATGCGGTTGG+GGG | - | chr3.3:86174952-86174971 | MS.gene071549:intron | 55.0% | |
| AGCTGCAGCTCCCTGACAAG+AGG | + | chr3.3:86175233-86175252 | None:intergenic | 60.0% | |
| GCTGCAGCTCCCTGACAAGA+GGG | + | chr3.3:86175232-86175251 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86173834 | 86175956 | 86173834 | ID=MS.gene071549 |
| chr3.3 | mRNA | 86173834 | 86175956 | 86173834 | ID=MS.gene071549.t1;Parent=MS.gene071549 |
| chr3.3 | exon | 86175770 | 86175956 | 86175770 | ID=MS.gene071549.t1.exon1;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86175770 | 86175956 | 86175770 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| chr3.3 | exon | 86175578 | 86175686 | 86175578 | ID=MS.gene071549.t1.exon2;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86175578 | 86175686 | 86175578 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| chr3.3 | exon | 86174718 | 86174942 | 86174718 | ID=MS.gene071549.t1.exon3;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86174718 | 86174942 | 86174718 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| chr3.3 | exon | 86174450 | 86174549 | 86174450 | ID=MS.gene071549.t1.exon4;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86174450 | 86174549 | 86174450 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| chr3.3 | exon | 86174263 | 86174373 | 86174263 | ID=MS.gene071549.t1.exon5;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86174263 | 86174373 | 86174263 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| chr3.3 | exon | 86174035 | 86174118 | 86174035 | ID=MS.gene071549.t1.exon6;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86174035 | 86174118 | 86174035 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| chr3.3 | exon | 86173834 | 86173892 | 86173834 | ID=MS.gene071549.t1.exon7;Parent=MS.gene071549.t1 |
| chr3.3 | CDS | 86173834 | 86173892 | 86173834 | ID=cds.MS.gene071549.t1;Parent=MS.gene071549.t1 |
| Gene Sequence |
| Protein sequence |
