AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01523

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01523.t1 MTR_2g015500 86.008 243 34 0 1 243 1 243 1.51e-160 444
MS.gene01523.t1 MTR_2g015510 82.231 242 41 1 2 243 3 242 5.07e-151 421
MS.gene01523.t1 MTR_2g015480 73.478 230 42 5 12 239 65 277 8.59e-110 318
MS.gene01523.t1 MTR_4g105680 45.249 221 112 3 25 242 51 265 7.38e-58 185
MS.gene01523.t1 MTR_7g068530 37.736 212 122 2 4 215 6 207 2.31e-50 165
MS.gene01523.t1 MTR_4g016510 37.264 212 125 3 4 215 6 209 1.80e-49 163
MS.gene01523.t1 MTR_7g068550 38.208 212 121 3 4 215 6 207 2.05e-49 163
MS.gene01523.t1 MTR_7g068460 36.449 214 126 3 2 215 31 234 1.67e-46 156
MS.gene01523.t1 MTR_3g070460 35.981 214 125 3 4 215 6 209 7.92e-45 151
MS.gene01523.t1 MTR_7g068500 36.279 215 125 4 2 215 30 233 2.67e-44 150
MS.gene01523.t1 MTR_7g068470 33.962 212 130 4 4 215 2 203 4.69e-41 141
MS.gene01523.t1 MTR_7g068470 34.434 212 125 5 4 215 2 199 1.21e-40 140
MS.gene01523.t1 MTR_7g068450 32.083 240 153 3 4 239 2 235 9.56e-39 135
MS.gene01523.t1 MTR_4g016500 30.137 146 64 3 33 178 277 384 6.51e-17 79.7
MS.gene01523.t1 MTR_7g068520 47.458 59 30 1 4 62 3 60 6.35e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01523.t1 AT5G45920 68.050 241 70 2 4 242 3 238 5.58e-121 344
MS.gene01523.t1 AT5G45920 68.050 241 70 2 4 242 3 238 5.58e-121 344
MS.gene01523.t1 AT5G45920 70.968 186 47 2 4 187 3 183 1.67e-95 278
MS.gene01523.t1 AT5G45920 70.968 186 47 2 4 187 3 183 1.67e-95 278
MS.gene01523.t1 AT5G62930 52.066 242 107 2 4 242 2 237 4.45e-82 246
MS.gene01523.t1 AT5G62930 52.066 242 107 2 4 242 28 263 1.76e-81 245
MS.gene01523.t1 AT5G62930 49.438 178 87 1 68 242 2 179 3.51e-53 170
MS.gene01523.t1 AT2G38180 38.389 211 120 3 4 214 6 206 8.63e-46 155
MS.gene01523.t1 AT3G11210 35.047 214 127 3 4 215 6 209 1.22e-44 150

Find 64 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTCATTTGTCCTTTC+AGG 0.154934 2.4:+69479811 None:intergenic
TTGGATCAATATCAGCTAAA+AGG 0.242460 2.4:+69479316 None:intergenic
AAATTCCTTTCATTGATCTT+TGG 0.243390 2.4:-69479744 MS.gene01523:CDS
AAGTCGTGCTTCTTCATCTA+TGG 0.253796 2.4:+69480192 None:intergenic
AATGCCTTCAGTGGATCATT+TGG 0.343903 2.4:+69479297 None:intergenic
TCCTTTGGTGTTGGAGGATG+GGG 0.361517 2.4:-69482542 MS.gene01523:CDS
TCGTCACCGCCATGTGATAC+TGG 0.369729 2.4:+69481045 None:intergenic
CAAAGCAACAGGAGCAGTTT+CGG 0.379507 2.4:+69481017 None:intergenic
GAAAGGAATTTGACACTCAT+TGG 0.387705 2.4:+69479756 None:intergenic
CTATGGGAGGAGGAGTTATA+AGG 0.399420 2.4:+69480209 None:intergenic
TGGATCAATATCAGCTAAAA+GGG 0.400368 2.4:+69479317 None:intergenic
GACGGTTTGCATCTCACTAA+TGG 0.400983 2.4:-69479423 MS.gene01523:CDS
TCGATCACTGAAGAATCCTT+TGG 0.438191 2.4:-69482557 MS.gene01523:CDS
AGGGAATCAATTTGTGTTTG+AGG 0.442405 2.4:-69479400 MS.gene01523:CDS
ACTAAAATGCAACGGTTCCC+TGG 0.444415 2.4:-69479721 MS.gene01523:CDS
AAGAAAACTGTCAAAGCAAC+AGG 0.453323 2.4:+69481006 None:intergenic
AATCCTTTGGTGTTGGAGGA+TGG 0.456779 2.4:-69482544 MS.gene01523:CDS
ATCCTTTGGTGTTGGAGGAT+GGG 0.456978 2.4:-69482543 MS.gene01523:CDS
GTCCTTTCAGGAAGCCCCTC+CGG 0.465657 2.4:+69479823 None:intergenic
AAATGCAACGGTTCCCTGGA+TGG 0.484613 2.4:-69479717 MS.gene01523:CDS
GGCACTGAAGGTGTTGGAAA+GGG 0.491788 2.4:-69481073 MS.gene01523:CDS
TATAACAAAACATGACTAAG+AGG 0.493140 2.4:-69482604 None:intergenic
ACTGAAGAATCCTTTGGTGT+TGG 0.507462 2.4:-69482551 MS.gene01523:CDS
TAGATGAAGAAGCACGACTT+AGG 0.509915 2.4:-69480189 MS.gene01523:intron
GAAGAATCCTTTGGTGTTGG+AGG 0.526860 2.4:-69482548 MS.gene01523:CDS
TGCCAACTATTTCTCTCGTA+CGG 0.529977 2.4:-69482510 MS.gene01523:intron
ATCCGGAGGGGCTTCCTGAA+AGG 0.532035 2.4:-69479825 MS.gene01523:CDS
TTATTTGTTTGTGAACAATC+CGG 0.532846 2.4:-69479842 MS.gene01523:CDS
TCACCGAAAAGATATATTTG+TGG 0.535472 2.4:+69482581 None:intergenic
AGTCGTGCTTCTTCATCTAT+GGG 0.542373 2.4:+69480193 None:intergenic
AATGCAACGGTTCCCTGGAT+GGG 0.542822 2.4:-69479716 MS.gene01523:CDS
GAAAGGACAAATGAAGCTGC+TGG 0.551991 2.4:-69479808 MS.gene01523:CDS
ATCTTTGGACTAAAATGCAA+CGG 0.555620 2.4:-69479729 MS.gene01523:CDS
TACCGTACGAGAGAAATAGT+TGG 0.562274 2.4:+69482508 None:intergenic
GGGCACTGAAGGTGTTGGAA+AGG 0.563729 2.4:-69481074 MS.gene01523:CDS
ATAAGGACAACATTAGTTGA+CGG 0.572638 2.4:+69480226 None:intergenic
AGTATCACATGGCGGTGACG+AGG 0.572977 2.4:-69481043 MS.gene01523:CDS
GCTTCTTCATCTATGGGAGG+AGG 0.576690 2.4:+69480199 None:intergenic
TGTGAGTCTAGAATCTATGC+AGG 0.579365 2.4:-69479349 MS.gene01523:CDS
TGTTCCTCTTCATGAGTACA+AGG 0.584094 2.4:-69480935 MS.gene01523:CDS
TTAGTCCAAAGATCAATGAA+AGG 0.592788 2.4:+69479739 None:intergenic
AAAAGGAGACAATGGAGCGA+AGG 0.597580 2.4:+69480908 None:intergenic
ACCCCATCCTCCAACACCAA+AGG 0.599552 2.4:+69482541 None:intergenic
TGGTGTTCAGAGGGTATCGT+GGG 0.600203 2.4:-69481110 MS.gene01523:CDS
GGTTTGCATCTCACTAATGG+AGG 0.604059 2.4:-69479420 MS.gene01523:CDS
TTGTCCTTGTACTCATGAAG+AGG 0.610871 2.4:+69480931 None:intergenic
TGATCCAAATGATCCACTGA+AGG 0.615047 2.4:-69479301 MS.gene01523:CDS
TAACACACGATGGGCACTGA+AGG 0.617976 2.4:-69481085 MS.gene01523:CDS
AGGCTGATGTGGTGTTCAGA+GGG 0.618365 2.4:-69481119 MS.gene01523:CDS
ACGATGGGCACTGAAGGTGT+TGG 0.625863 2.4:-69481079 MS.gene01523:CDS
GTGGTGTTCAGAGGGTATCG+TGG 0.629790 2.4:-69481111 MS.gene01523:CDS
GGATCAATATCAGCTAAAAG+GGG 0.632239 2.4:+69479318 None:intergenic
TGCTAAAGCATGCATTTCTG+TGG 0.632567 2.4:-69479779 MS.gene01523:CDS
TAGGCTGATGTGGTGTTCAG+AGG 0.635589 2.4:-69481120 MS.gene01523:CDS
TTGTTTGTGAACAATCCGGA+GGG 0.641948 2.4:-69479838 MS.gene01523:CDS
TCGTGGGTATAACACACGAT+GGG 0.646142 2.4:-69481094 MS.gene01523:CDS
TGTTTGTGAACAATCCGGAG+GGG 0.648290 2.4:-69479837 MS.gene01523:CDS
GTATCACATGGCGGTGACGA+GGG 0.648679 2.4:-69481042 MS.gene01523:CDS
CGTGCTTCTTCATCTATGGG+AGG 0.659087 2.4:+69480196 None:intergenic
TTTGTTTGTGAACAATCCGG+AGG 0.659446 2.4:-69479839 MS.gene01523:CDS
GTTTGCATCTCACTAATGGA+GGG 0.661505 2.4:-69479419 MS.gene01523:CDS
GATCAATATCAGCTAAAAGG+GGG 0.672744 2.4:+69479319 None:intergenic
ATCGTGGGTATAACACACGA+TGG 0.679127 2.4:-69481095 MS.gene01523:CDS
GCTCGTGTGATAGGCTGATG+TGG 0.704764 2.4:-69481130 MS.gene01523:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATAAATAAA+AGG - chr2.4:69480318-69480337 MS.gene01523:intron 0.0%
!!! AATTAAAAAAAAATTATTTT+TGG + chr2.4:69480602-69480621 None:intergenic 0.0%
!! GTATAAATAAATCATATAAT+TGG - chr2.4:69481598-69481617 MS.gene01523:intron 10.0%
!!! AATAAATAAAAGGTTAATTT+TGG - chr2.4:69480328-69480347 MS.gene01523:intron 10.0%
!!! CATTAGTATTTTAAATTAAA+TGG + chr2.4:69482279-69482298 None:intergenic 10.0%
!!! CTTTAAAATGATTTTTTTTT+TGG - chr2.4:69480021-69480040 MS.gene01523:intron 10.0%
!!! TTATTAAAATTAAAAGTGTT+TGG - chr2.4:69479853-69479872 MS.gene01523:intron 10.0%
!! AAAATTCTAAACATTTAAAG+TGG + chr2.4:69481532-69481551 None:intergenic 15.0%
!! ATAAATATAAATGACGTAAA+AGG - chr2.4:69479900-69479919 MS.gene01523:intron 15.0%
!! ATATGATTTATTTATACAAG+AGG + chr2.4:69481595-69481614 None:intergenic 15.0%
!! ATTAAATATGCAAAGATAAT+TGG - chr2.4:69482324-69482343 MS.gene01523:intron 15.0%
!! TATTATATGAATTATGAACA+AGG - chr2.4:69480172-69480191 MS.gene01523:intron 15.0%
!!! AAAAATCTTATTTTAAAAGC+CGG + chr2.4:69481103-69481122 None:intergenic 15.0%
!!! AATGTTTTTATTTTTCGTTA+TGG - chr2.4:69479523-69479542 MS.gene01523:intron 15.0%
!!! ACATTTGATTTATCATATAA+TGG + chr2.4:69481370-69481389 None:intergenic 15.0%
!!! CTTAATTTTGTTTTTTCTTT+AGG - chr2.4:69481447-69481466 MS.gene01523:intron 15.0%
!! AAATCAAATGTAGAAATAGT+AGG - chr2.4:69481309-69481328 MS.gene01523:intron 20.0%
!! AAATCAAATGTAGAAATTGT+AGG - chr2.4:69481379-69481398 MS.gene01523:intron 20.0%
!! AACTTATTAATTAGTGAGTT+GGG - chr2.4:69481246-69481265 MS.gene01523:intron 20.0%
!! AAGAAAACCTAATAAAAACA+AGG + chr2.4:69481947-69481966 None:intergenic 20.0%
!! AGAAAACCTAATAAAAACAA+GGG + chr2.4:69481946-69481965 None:intergenic 20.0%
!! ATAAAAAAACTAAGAGATGA+AGG - chr2.4:69482511-69482530 MS.gene01523:CDS 20.0%
!! TAAAAACAATGACAAAATCA+AGG + chr2.4:69481741-69481760 None:intergenic 20.0%
!! TAAAATACTAATGAACATGA+TGG - chr2.4:69482286-69482305 MS.gene01523:intron 20.0%
!! TAAACATAAATGAAGAGTTA+AGG - chr2.4:69481074-69481093 MS.gene01523:CDS 20.0%
!! TAATAAATAAACCCGTTATT+AGG + chr2.4:69481153-69481172 None:intergenic 20.0%
!! TATAGAAGTTAATCATACTT+AGG - chr2.4:69481996-69482015 MS.gene01523:intron 20.0%
!! TTTCAATCTATTACAAAATC+TGG + chr2.4:69479476-69479495 None:intergenic 20.0%
!!! AACAAAGAAGGTAAAATTTT+TGG + chr2.4:69482213-69482232 None:intergenic 20.0%
!!! AAGAAAATGTTTCCATTTTT+GGG + chr2.4:69481805-69481824 None:intergenic 20.0%
!!! TAAGAAAATGTTTCCATTTT+TGG + chr2.4:69481806-69481825 None:intergenic 20.0%
!!! TACTTTCTCAAAAATCATTT+TGG + chr2.4:69480674-69480693 None:intergenic 20.0%
!!! TGATTTTGTCATTGTTTTTA+GGG - chr2.4:69481741-69481760 MS.gene01523:intron 20.0%
!!! TTGATTTTGTCATTGTTTTT+AGG - chr2.4:69481740-69481759 MS.gene01523:intron 20.0%
!!! TTTGTTTTTTCTTTAGGTTT+AGG - chr2.4:69481453-69481472 MS.gene01523:intron 20.0%
!!! TTTTGGAAAACATCTTTAAA+AGG - chr2.4:69480038-69480057 MS.gene01523:intron 20.0%
! AAAACATGTGAAACAGATAT+AGG + chr2.4:69480530-69480549 None:intergenic 25.0%
! AAATTCCTTTCATTGATCTT+TGG - chr2.4:69482139-69482158 MS.gene01523:intron 25.0%
! AGAAAAAACATGAAATGACA+TGG + chr2.4:69479437-69479456 None:intergenic 25.0%
! AGTGAACAAGAAATCTTTAA+AGG - chr2.4:69480211-69480230 MS.gene01523:CDS 25.0%
! AGTTAATGAAACCTAATAAC+GGG - chr2.4:69481139-69481158 MS.gene01523:intron 25.0%
! CACTATGGAAAATATTTGTT+AGG - chr2.4:69479695-69479714 MS.gene01523:intron 25.0%
! GAAATGTGCAAATTTGATAT+TGG - chr2.4:69481223-69481242 MS.gene01523:intron 25.0%
! GAACTTATTAATTAGTGAGT+TGG - chr2.4:69481245-69481264 MS.gene01523:intron 25.0%
! GAGTTAATGAAACCTAATAA+CGG - chr2.4:69481138-69481157 MS.gene01523:intron 25.0%
! TAACAATGACTAATCTATGT+TGG + chr2.4:69480553-69480572 None:intergenic 25.0%
! TAAGAGAAGATAAACAAAGA+AGG + chr2.4:69482225-69482244 None:intergenic 25.0%
! TATCTTCTCTTACAATACTT+TGG - chr2.4:69482233-69482252 MS.gene01523:intron 25.0%
! TTACCAAGTTACCTTAAAAA+AGG + chr2.4:69480995-69481014 None:intergenic 25.0%
! TTATTTGTTTGTGAACAATC+CGG - chr2.4:69482041-69482060 MS.gene01523:intron 25.0%
!! ATGCTATGGTATTATAGTTT+TGG - chr2.4:69482403-69482422 MS.gene01523:intron 25.0%
!! GGTGACATTTTACATTTTAA+TGG + chr2.4:69481349-69481368 None:intergenic 25.0%
!! TCATCAAAATTGACTTTGTA+TGG + chr2.4:69482361-69482380 None:intergenic 25.0%
!!! ACATTTCCCTTGTTTTTATT+AGG - chr2.4:69481937-69481956 MS.gene01523:intron 25.0%
!!! CTTTGAGTTTTTCATTTTAG+AGG + chr2.4:69481280-69481299 None:intergenic 25.0%
!!! TCAATTTTTAGTTCACACTA+TGG - chr2.4:69479680-69479699 MS.gene01523:intron 25.0%
!!! TTTCATGTTTTTTCTCTTGA+TGG - chr2.4:69479442-69479461 MS.gene01523:intron 25.0%
AAAAAACAGCAACATTCTTG+TGG + chr2.4:69480286-69480305 None:intergenic 30.0%
AAGAGGCTCAAATATCTTAT+CGG + chr2.4:69479642-69479661 None:intergenic 30.0%
AATCAAAGTATGTGATGCTA+TGG - chr2.4:69482389-69482408 MS.gene01523:intron 30.0%
ATAAGGACAACATTAGTTGA+CGG + chr2.4:69481660-69481679 None:intergenic 30.0%
ATCTTTGGACTAAAATGCAA+CGG - chr2.4:69482154-69482173 MS.gene01523:intron 30.0%
ATTTGAGCCTCTTAAATATG+TGG - chr2.4:69479649-69479668 MS.gene01523:intron 30.0%
TACCTTAAAAAAGGAGACAA+TGG + chr2.4:69480986-69481005 None:intergenic 30.0%
TCACCGAAAAGATATATTTG+TGG + chr2.4:69479305-69479324 None:intergenic 30.0%
TGGATCAATATCAGCTAAAA+GGG + chr2.4:69482569-69482588 None:intergenic 30.0%
TGTTAACTTAAATGCAGTGA+CGG - chr2.4:69482442-69482461 MS.gene01523:intron 30.0%
TTAGTCCAAAGATCAATGAA+AGG + chr2.4:69482147-69482166 None:intergenic 30.0%
TTGATAGAATAAGACGTGTT+TGG + chr2.4:69480446-69480465 None:intergenic 30.0%
TTGGATCAATATCAGCTAAA+AGG + chr2.4:69482570-69482589 None:intergenic 30.0%
! AGGCCACAAATATATCTTTT+CGG - chr2.4:69479299-69479318 MS.gene01523:CDS 30.0%
! TGAAAAACAGAGCATCTATT+AGG + chr2.4:69480925-69480944 None:intergenic 30.0%
! TTGCTTTGACAGTTTTCTTT+GGG - chr2.4:69480881-69480900 MS.gene01523:intron 30.0%
!!! TCTCCTTTTTTAAGGTAACT+TGG - chr2.4:69480989-69481008 MS.gene01523:CDS 30.0%
AAACAGATATAGGCTGTGTT+TGG + chr2.4:69480520-69480539 None:intergenic 35.0%
AAATGAAGAGTTAAGGAGAC+CGG - chr2.4:69481081-69481100 MS.gene01523:CDS 35.0%
AAATGACATGGAAACATGGT+TGG + chr2.4:69479425-69479444 None:intergenic 35.0%
AACCGTAATATATGACAACC+TGG - chr2.4:69480235-69480254 MS.gene01523:CDS 35.0%
AAGAAAACTGTCAAAGCAAC+AGG + chr2.4:69480880-69480899 None:intergenic 35.0%
ACCCAGGTTGTCATATATTA+CGG + chr2.4:69480240-69480259 None:intergenic 35.0%
ACCGTAATATATGACAACCT+GGG - chr2.4:69480236-69480255 MS.gene01523:CDS 35.0%
AGAGGCTCAAATATCTTATC+GGG + chr2.4:69479641-69479660 None:intergenic 35.0%
AGGGAATCAATTTGTGTTTG+AGG - chr2.4:69482483-69482502 MS.gene01523:intron 35.0%
ATATATGACAACCTGGGTTA+TGG - chr2.4:69480242-69480261 MS.gene01523:intron 35.0%
CAAAAAACGCTATAAGCTAG+TGG - chr2.4:69480407-69480426 MS.gene01523:intron 35.0%
CATGAAATGACATGGAAACA+TGG + chr2.4:69479429-69479448 None:intergenic 35.0%
CATGTTAAGCAACCCAAAAA+TGG - chr2.4:69481790-69481809 MS.gene01523:intron 35.0%
CTCTTGACCACATATTTAAG+AGG + chr2.4:69479659-69479678 None:intergenic 35.0%
GAAAGGAATTTGACACTCAT+TGG + chr2.4:69482130-69482149 None:intergenic 35.0%
GATCAATATCAGCTAAAAGG+GGG + chr2.4:69482567-69482586 None:intergenic 35.0%
GATGGGAAAAAGTTTACTTG+AGG - chr2.4:69482184-69482203 MS.gene01523:intron 35.0%
GGATCAATATCAGCTAAAAG+GGG + chr2.4:69482568-69482587 None:intergenic 35.0%
TATATGACAACCTGGGTTAT+GGG - chr2.4:69480243-69480262 MS.gene01523:intron 35.0%
TTGCTTAACATGTGCCTTAA+GGG + chr2.4:69481782-69481801 None:intergenic 35.0%
! CTTTTGAATTTCAGAAGCGA+TGG - chr2.4:69481634-69481653 MS.gene01523:intron 35.0%
! TAAGCTAGCTTATAGCTTGT+TGG + chr2.4:69480488-69480507 None:intergenic 35.0%
! TGCTTTGACAGTTTTCTTTG+GGG - chr2.4:69480882-69480901 MS.gene01523:intron 35.0%
!! AAGTAAACTTTTTCCCATCC+AGG + chr2.4:69482183-69482202 None:intergenic 35.0%
!! AATCATTAACTTGTGCCTTG+AGG - chr2.4:69481904-69481923 MS.gene01523:intron 35.0%
!! AGTAAACTTTTTCCCATCCA+GGG + chr2.4:69482182-69482201 None:intergenic 35.0%
!! ATCATTAACTTGTGCCTTGA+GGG - chr2.4:69481905-69481924 MS.gene01523:intron 35.0%
!! GTTGCTTTGACAGTTTTCTT+TGG - chr2.4:69480880-69480899 MS.gene01523:intron 35.0%
!!! CTCCATTGTCTCCTTTTTTA+AGG - chr2.4:69480981-69481000 MS.gene01523:CDS 35.0%
AAGTCGTGCTTCTTCATCTA+TGG + chr2.4:69481694-69481713 None:intergenic 40.0%
AATGCCTTCAGTGGATCATT+TGG + chr2.4:69482589-69482608 None:intergenic 40.0%
AGTCGTGCTTCTTCATCTAT+GGG + chr2.4:69481693-69481712 None:intergenic 40.0%
ATCAAATGAGCTCGTGTGAT+AGG - chr2.4:69480744-69480763 MS.gene01523:intron 40.0%
GTTGCTTAACATGTGCCTTA+AGG + chr2.4:69481783-69481802 None:intergenic 40.0%
GTTTGCATCTCACTAATGGA+GGG - chr2.4:69482464-69482483 MS.gene01523:intron 40.0%
TACCGTACGAGAGAAATAGT+TGG + chr2.4:69479378-69479397 None:intergenic 40.0%
TAGGAGAGAGAATCCACTAT+GGG - chr2.4:69479714-69479733 MS.gene01523:CDS 40.0%
TCGATCACTGAAGAATCCTT+TGG - chr2.4:69479326-69479345 MS.gene01523:CDS 40.0%
TGATCCAAATGATCCACTGA+AGG - chr2.4:69482582-69482601 MS.gene01523:CDS 40.0%
TGCTAAAGCATGCATTTCTG+TGG - chr2.4:69482104-69482123 MS.gene01523:intron 40.0%
TGTTCCTCTTCATGAGTACA+AGG - chr2.4:69480948-69480967 MS.gene01523:CDS 40.0%
TTAGGAGAGAGAATCCACTA+TGG - chr2.4:69479713-69479732 MS.gene01523:CDS 40.0%
TTGTCCTTGTACTCATGAAG+AGG + chr2.4:69480955-69480974 None:intergenic 40.0%
TTGTTTGTGAACAATCCGGA+GGG - chr2.4:69482045-69482064 MS.gene01523:intron 40.0%
TTTACCAAACACACCCATAG+TGG + chr2.4:69479730-69479749 None:intergenic 40.0%
TTTGTTTGTGAACAATCCGG+AGG - chr2.4:69482044-69482063 MS.gene01523:intron 40.0%
! ACTGAAGAATCCTTTGGTGT+TGG - chr2.4:69479332-69479351 MS.gene01523:CDS 40.0%
! AGGGTTTTTCCAGTATCACA+TGG - chr2.4:69480829-69480848 MS.gene01523:intron 40.0%
! GTTTTTCCAGTATCACATGG+CGG - chr2.4:69480832-69480851 MS.gene01523:intron 40.0%
! TAGATGAAGAAGCACGACTT+AGG - chr2.4:69481694-69481713 MS.gene01523:intron 40.0%
! TGCCAACTATTTCTCTCGTA+CGG - chr2.4:69479373-69479392 MS.gene01523:CDS 40.0%
! TGTGAGTCTAGAATCTATGC+AGG - chr2.4:69482534-69482553 MS.gene01523:CDS 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr2.4:69481922-69481941 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTTA+AGG - chr2.4:69481765-69481784 MS.gene01523:intron 40.0%
AAAAGGAGACAATGGAGCGA+AGG + chr2.4:69480978-69480997 None:intergenic 45.0%
ACTAAAATGCAACGGTTCCC+TGG - chr2.4:69482162-69482181 MS.gene01523:intron 45.0%
ATCGTGGGTATAACACACGA+TGG - chr2.4:69480788-69480807 MS.gene01523:intron 45.0%
CAAAGCAACAGGAGCAGTTT+CGG + chr2.4:69480869-69480888 None:intergenic 45.0%
CTATGGGAGGAGGAGTTATA+AGG + chr2.4:69481677-69481696 None:intergenic 45.0%
GAAAGGACAAATGAAGCTGC+TGG - chr2.4:69482075-69482094 MS.gene01523:intron 45.0%
GAATCCACTATGGGTGTGTT+TGG - chr2.4:69479723-69479742 MS.gene01523:CDS 45.0%
GACGGTTTGCATCTCACTAA+TGG - chr2.4:69482460-69482479 MS.gene01523:intron 45.0%
GCAGCTTCATTTGTCCTTTC+AGG + chr2.4:69482075-69482094 None:intergenic 45.0%
GGTTTGCATCTCACTAATGG+AGG - chr2.4:69482463-69482482 MS.gene01523:intron 45.0%
TCGTGGGTATAACACACGAT+GGG - chr2.4:69480789-69480808 MS.gene01523:intron 45.0%
TGTTTGTGAACAATCCGGAG+GGG - chr2.4:69482046-69482065 MS.gene01523:intron 45.0%
!! AATCCTTTGGTGTTGGAGGA+TGG - chr2.4:69479339-69479358 MS.gene01523:CDS 45.0%
!! ATCCTTTGGTGTTGGAGGAT+GGG - chr2.4:69479340-69479359 MS.gene01523:CDS 45.0%
!! GAAGAATCCTTTGGTGTTGG+AGG - chr2.4:69479335-69479354 MS.gene01523:CDS 45.0%
!!! TATTTTTTAATTTCAATTAT+AGG - chr2.4:69481569-69481588 MS.gene01523:intron 5.0%
AAATGCAACGGTTCCCTGGA+TGG - chr2.4:69482166-69482185 MS.gene01523:intron 50.0%
AATGCAACGGTTCCCTGGAT+GGG - chr2.4:69482167-69482186 MS.gene01523:intron 50.0%
ACCTGGGTTATGGGTAAACG+TGG - chr2.4:69480252-69480271 MS.gene01523:intron 50.0%
AGGCTGATGTGGTGTTCAGA+GGG - chr2.4:69480764-69480783 MS.gene01523:intron 50.0%
CGTGCTTCTTCATCTATGGG+AGG + chr2.4:69481690-69481709 None:intergenic 50.0%
GCTTCTTCATCTATGGGAGG+AGG + chr2.4:69481687-69481706 None:intergenic 50.0%
TAGGCTGATGTGGTGTTCAG+AGG - chr2.4:69480763-69480782 MS.gene01523:intron 50.0%
TCCACGTTTACCCATAACCC+AGG + chr2.4:69480256-69480275 None:intergenic 50.0%
!! GGCACTGAAGGTGTTGGAAA+GGG - chr2.4:69480810-69480829 MS.gene01523:intron 50.0%
!! TAACACACGATGGGCACTGA+AGG - chr2.4:69480798-69480817 MS.gene01523:intron 50.0%
!! TCCTTTGGTGTTGGAGGATG+GGG - chr2.4:69479341-69479360 MS.gene01523:CDS 50.0%
!! TGGTGTTCAGAGGGTATCGT+GGG - chr2.4:69480773-69480792 MS.gene01523:intron 50.0%
ACCCCATCCTCCAACACCAA+AGG + chr2.4:69479345-69479364 None:intergenic 55.0%
AGTATCACATGGCGGTGACG+AGG - chr2.4:69480840-69480859 MS.gene01523:intron 55.0%
GCTCGTGTGATAGGCTGATG+TGG - chr2.4:69480753-69480772 MS.gene01523:intron 55.0%
GTATCACATGGCGGTGACGA+GGG - chr2.4:69480841-69480860 MS.gene01523:intron 55.0%
TCGTCACCGCCATGTGATAC+TGG + chr2.4:69480841-69480860 None:intergenic 55.0%
!! ACGATGGGCACTGAAGGTGT+TGG - chr2.4:69480804-69480823 MS.gene01523:intron 55.0%
!! GGGCACTGAAGGTGTTGGAA+AGG - chr2.4:69480809-69480828 MS.gene01523:intron 55.0%
!! GTGGTGTTCAGAGGGTATCG+TGG - chr2.4:69480772-69480791 MS.gene01523:intron 55.0%
ATCCGGAGGGGCTTCCTGAA+AGG - chr2.4:69482058-69482077 MS.gene01523:intron 60.0%
GTCCTTTCAGGAAGCCCCTC+CGG + chr2.4:69482063-69482082 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 69479290 69482615 69479290 ID=MS.gene01523
chr2.4 mRNA 69479290 69482615 69479290 ID=MS.gene01523.t1;Parent=MS.gene01523
chr2.4 exon 69482511 69482615 69482511 ID=MS.gene01523.t1.exon1;Parent=MS.gene01523.t1
chr2.4 CDS 69482511 69482615 69482511 ID=cds.MS.gene01523.t1;Parent=MS.gene01523.t1
chr2.4 exon 69480903 69481139 69480903 ID=MS.gene01523.t1.exon2;Parent=MS.gene01523.t1
chr2.4 CDS 69480903 69481139 69480903 ID=cds.MS.gene01523.t1;Parent=MS.gene01523.t1
chr2.4 exon 69480190 69480257 69480190 ID=MS.gene01523.t1.exon3;Parent=MS.gene01523.t1
chr2.4 CDS 69480190 69480257 69480190 ID=cds.MS.gene01523.t1;Parent=MS.gene01523.t1
chr2.4 exon 69479700 69479864 69479700 ID=MS.gene01523.t1.exon4;Parent=MS.gene01523.t1
chr2.4 CDS 69479700 69479864 69479700 ID=cds.MS.gene01523.t1;Parent=MS.gene01523.t1
chr2.4 exon 69479290 69479446 69479290 ID=MS.gene01523.t1.exon5;Parent=MS.gene01523.t1
chr2.4 CDS 69479290 69479446 69479290 ID=cds.MS.gene01523.t1;Parent=MS.gene01523.t1
Gene Sequence

>MS.gene01523

ATGACTAAGAGGCCACAAATATATCTTTTCGGTGATTCGATCACTGAAGAATCCTTTGGTGTTGGAGGATGGGGTGCTTCTCTTGCCAACTATTTCTCTCGTACGGTAATAATTCATTCTTGCTTTAAGTGACCAACCATGTTTCCATGTCATTTCATGTTTTTTCTCTTGATGGTTATTTTTCCAGATTTTGTAATAGATTGAAATGAAAGTGATTTTAAATAAAAATAAACAATGTTTTTATTTTTCGTTATGGTTTACAAATCATTCAAGTTGAAAAACTATACATGTTAAATTAGATTTTCATTAATATGATTTAAAGAAAGATAGATTCAGCAATCGATTGATCCCGATAAGATATTTGAGCCTCTTAAATATGTGGTCAAGAGTTCAATTTTTAGTTCACACTATGGAAAATATTTGTTAGGAGAGAGAATCCACTATGGGTGTGTTTGGTAAAAATAAGCTATAAGCTAGCTGATAGCTGATAAGCTAGCTGATAGATGAAAAGCTAGCTTATAGCTGATGACTGATAGCTGATAGCTTATAGCTTAAAAGTTAGCTTATTAAAATTAAAAGTGTTTGGTAAAATTAGCTGTTGAAGTGACTGATAAATATAAATGACGTAAAAGGACGTGTTTGTTTAATTTTTAATATAAATCATATATATAATTTTTATTACTTAACGTATTTCTTTTTAAAGATTTAAATATATTACAAATTATTTTCATCTTTAAAATGATTTTTTTTTTGGAAAACATCTTTAAAAGGATAAATATATATGAATTCAATCGATATTTTCTATTCGACAAAACTTTTTTTTATGAATTTTATTTAACTAAATTTGCTTCACTGTTTATTGTAAATTTTTATAAAATTATTTATTATATGAATTATGAACAAGGTAAAAAAAACAAAAAAAGTGAACAAGAAATCTTTAAAGGAAACCGTAATATATGACAACCTGGGTTATGGGTAAACGTGGACAGTTTACCACAAGAATGTTGCTGTTTTTTTTTATTATAAAAAATAAAATAAAATAAATAAAAGGTTAATTTTGGAAGAAAATATAAAAAGCTACAAGCTAAAAGCTCAAAAGCTACTTGAAATAGCTCTTCAAAAAACGCTATAAGCTAGTGGAAAAAGCTTTTTACCAAACACGTCTTATTCTATCAAAACAAGCTTATAAGCTAGTCCAACAAGCTATAAGCTAGCTTATTTGTGTTACCAAACACAGCCTATATCTGTTTCACATGTTTTCCAACATAGATTAGTCATTGTTAAACAACTTCGTACTAATTTCATGTAACCAAAAATAATTTTTTTTTAATTTTCAAAAACTAATTAAAGTAATTGTTACATTTTCAAACTTTTTTTTTTACCAAAATGATTTTTGAGAAAGTACACACAAACATAATTAAAAGATCAAAAGTGATTTTCTCAAAATATTTTTAATCAAATGAGCTCGTGTGATAGGCTGATGTGGTGTTCAGAGGGTATCGTGGGTATAACACACGATGGGCACTGAAGGTGTTGGAAAGGGTTTTTCCAGTATCACATGGCGGTGACGAGGGAACCGAAACTGCTCCTGTTGCTTTGACAGTTTTCTTTGGGGCTAATGATGCTTGTCTTCCTAATAGATGCTCTGTTTTTCAACATGTTCCTCTTCATGAGTACAAGGACAACCTTCGCTCCATTGTCTCCTTTTTTAAGGTAACTTGGTAACAAGTTCTGATTTCTTCAATTATTTATTTTTGTTTATTATTGTTCATTCATAAGAGAGATAAACATAAATGAAGAGTTAAGGAGACCGGCTTTTAAAATAAGATTTTTTTTTTTTAAAATCAAGAGTTAATGAAACCTAATAACGGGTTTATTTATTAAAAAAAATCTATCATGTGCAACTTTGATATTAGAACTTTTTTTTTTGAAAGAAATGTGCAAATTTGATATTGGAACTTATTAATTAGTGAGTTGGGATCTGATTCCTCTAAAATGAAAAACTCAAAGTAAAATATTAAATCAAATGTAGAAATAGTAGGTTCATGCAAATCAACCATTAAAATGTAAAATGTCACCATTATATGATAAATCAAATGTAGAAATTGTAGGTTCATGCAAATCATAAGTTTGTTATTAACAACTCTTAACTAGCTTCTTAATTTTGTTTTTTCTTTAGGTTTAGGCTCTCTTTTGTTCATGAAAAAACAACTTTTTATTTTCTGACTTTACTCTTTAGCCACTTTAAATGTTTAGAATTTTGTTTGATGACGCTTAAATATTTTTTAATTTCAATTATAGGCCTCTTGTATAAATAAATCATATAATTGGTTACTGCAACTTTCTTTTGAATTTCAGAAGCGATGGCCGTCAACTAATGTTGTCCTTATAACTCCTCCTCCCATAGATGAAGAAGCACGACTTAGGTAATGTTTCATTGACTTTTTTCCTTGATTTTGTCATTGTTTTTAGGGTCATGTTAACTTGTGCCCTTAAGGCACATGTTAAGCAACCCAAAAATGGAAACATTTTCTTAAATTTTGTGCATTCAATTATTGAAAAGTAAAAAAGTTAAAGTCAAATGCATTAATTACAATAGAATATTTCTATTTTGAATCATTAACTTGTGCCTTGAGGGCACAAGTTAACATTTCCCTTGTTTTTATTAGGTTTTCTTTGTTTGTGACACACACACACGTATAATTCTATAGAAGTTAATCATACTTAGGAATTTCTAAAAATTTATTGTAGTTATTTGTTTGTGAACAATCCGGAGGGGCTTCCTGAAAGGACAAATGAAGCTGCTGGTGAATATGCTAAAGCATGCATTTCTGTGGCCAATGAGTGTCAAATTCCTTTCATTGATCTTTGGACTAAAATGCAACGGTTCCCTGGATGGGAAAAAGTTTACTTGAGGTTTCCAAAAATTTTACCTTCTTTGTTTATCTTCTCTTACAATACTTTGGAATCTTGATATTAGTATTTACCATTTAATTTAAAATACTAATGAACATGATGGCTTTGTTATAGTTTGATTAAATATGCAAAGATAATTGGAAAATCAATTACCATACAAAGTCAATTTTGATGATGCTAATTAATCAAAGTATGTGATGCTATGGTATTATAGTTTTGGTTTTGATATATGATTATGTTAACTTAAATGCAGTGACGGTTTGCATCTCACTAATGGAGGGAATCAATTTGTGTTTGAGGAAGTAATAAAAAAACTAAGAGATGAAGGTGTGAGTCTAGAATCTATGCAGGTTGATCTCCCCCTTTTAGCTGATATTGATCCAAATGATCCACTGAAGGCATTTTTGTAG
Protein sequence

>MS.gene01523.t1

MTKRPQIYLFGDSITEESFGVGGWGASLANYFSRTADVVFRGYRGYNTRWALKVLERVFPVSHGGDEGTETAPVALTVFFGANDACLPNRCSVFQHVPLHEYKDNLRSIVSFFKKRWPSTNVVLITPPPIDEEARLSYLFVNNPEGLPERTNEAAGEYAKACISVANECQIPFIDLWTKMQRFPGWEKVYLSDGLHLTNGGNQFVFEEVIKKLRDEGVSLESMQVDLPLLADIDPNDPLKAFL