Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015453.t1 | AES94229.2 | 96.7 | 451 | 15 | 0 | 1 | 451 | 1 | 451 | 1.30E-261 | 911.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015453.t1 | Q94BV5 | 62.3 | 454 | 160 | 5 | 2 | 449 | 3 | 451 | 5.5e-168 | 592.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015453.t1 | G7JVZ6 | 96.7 | 451 | 15 | 0 | 1 | 451 | 1 | 451 | 9.3e-262 | 911.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015453 | MS.gene21150 | PPI |
| MS.gene015453 | MS.gene99127 | PPI |
| MS.gene015453 | MS.gene76883 | PPI |
| MS.gene015453 | MS.gene09953 | PPI |
| MS.gene015453 | MS.gene23970 | PPI |
| MS.gene015453 | MS.gene89575 | PPI |
| MS.gene015453 | MS.gene036055 | PPI |
| MS.gene015453 | MS.gene038078 | PPI |
| MS.gene015453 | MS.gene025792 | PPI |
| MS.gene015453 | MS.gene63578 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015453.t1 | MTR_5g012130 | 96.674 | 451 | 15 | 0 | 1 | 451 | 1 | 451 | 0.0 | 908 |
| MS.gene015453.t1 | MTR_5g012130 | 97.264 | 329 | 9 | 0 | 1 | 329 | 21 | 349 | 0.0 | 665 |
| MS.gene015453.t1 | MTR_5g012130 | 96.154 | 260 | 10 | 0 | 1 | 260 | 21 | 280 | 0.0 | 517 |
| MS.gene015453.t1 | MTR_8g037880 | 53.440 | 436 | 187 | 5 | 13 | 442 | 4 | 429 | 3.27e-164 | 470 |
| MS.gene015453.t1 | MTR_8g037910 | 53.302 | 424 | 190 | 4 | 13 | 436 | 4 | 419 | 5.32e-161 | 461 |
| MS.gene015453.t1 | MTR_3g437580 | 47.912 | 455 | 212 | 9 | 1 | 442 | 1 | 443 | 1.16e-147 | 429 |
| MS.gene015453.t1 | MTR_8g037910 | 56.604 | 318 | 134 | 3 | 13 | 330 | 4 | 317 | 6.77e-126 | 368 |
| MS.gene015453.t1 | MTR_3g437580 | 50.729 | 343 | 153 | 7 | 1 | 330 | 1 | 340 | 1.81e-116 | 345 |
| MS.gene015453.t1 | MTR_8g037910 | 53.480 | 273 | 123 | 3 | 13 | 285 | 4 | 272 | 8.84e-97 | 292 |
| MS.gene015453.t1 | MTR_7g107690 | 26.087 | 230 | 132 | 7 | 13 | 236 | 8 | 205 | 1.26e-12 | 69.7 |
| MS.gene015453.t1 | MTR_7g107710 | 23.132 | 281 | 179 | 6 | 13 | 291 | 6 | 251 | 1.47e-12 | 69.3 |
| MS.gene015453.t1 | MTR_7g099330 | 24.034 | 233 | 135 | 6 | 14 | 237 | 25 | 224 | 2.21e-12 | 68.9 |
| MS.gene015453.t1 | MTR_2g450510 | 24.016 | 254 | 133 | 10 | 11 | 231 | 3 | 229 | 2.76e-12 | 68.9 |
| MS.gene015453.t1 | MTR_1g069275 | 24.554 | 224 | 138 | 6 | 15 | 236 | 27 | 221 | 4.89e-12 | 67.8 |
| MS.gene015453.t1 | MTR_2g450310 | 24.219 | 256 | 130 | 10 | 11 | 231 | 3 | 229 | 5.64e-12 | 67.8 |
| MS.gene015453.t1 | MTR_3g109520 | 24.898 | 245 | 150 | 7 | 15 | 253 | 41 | 257 | 1.21e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015453.t1 | AT1G62620 | 61.504 | 452 | 163 | 5 | 6 | 450 | 3 | 450 | 0.0 | 580 |
| MS.gene015453.t1 | AT1G63370 | 61.283 | 452 | 164 | 5 | 6 | 450 | 3 | 450 | 0.0 | 580 |
| MS.gene015453.t1 | AT1G62600 | 62.555 | 454 | 159 | 6 | 2 | 449 | 3 | 451 | 0.0 | 571 |
| MS.gene015453.t1 | AT1G12200 | 60.526 | 456 | 169 | 6 | 1 | 449 | 1 | 452 | 0.0 | 546 |
| MS.gene015453.t1 | AT1G62560 | 55.408 | 453 | 196 | 3 | 1 | 451 | 1 | 449 | 0.0 | 528 |
| MS.gene015453.t1 | AT1G12140 | 58.499 | 453 | 181 | 3 | 1 | 451 | 1 | 448 | 0.0 | 527 |
| MS.gene015453.t1 | AT1G12140 | 58.499 | 453 | 181 | 3 | 1 | 451 | 1 | 448 | 0.0 | 527 |
| MS.gene015453.t1 | AT1G62580 | 60.177 | 452 | 173 | 6 | 1 | 449 | 2 | 449 | 0.0 | 525 |
| MS.gene015453.t1 | AT1G62620 | 64.508 | 386 | 130 | 4 | 6 | 384 | 3 | 388 | 0.0 | 521 |
| MS.gene015453.t1 | AT1G12140 | 58.057 | 453 | 181 | 4 | 1 | 451 | 1 | 446 | 0.0 | 518 |
| MS.gene015453.t1 | AT1G65860 | 55.088 | 452 | 195 | 5 | 2 | 451 | 3 | 448 | 0.0 | 515 |
| MS.gene015453.t1 | AT1G62600 | 65.039 | 389 | 129 | 5 | 2 | 384 | 3 | 390 | 1.15e-178 | 505 |
| MS.gene015453.t1 | AT1G62540 | 56.291 | 453 | 191 | 4 | 1 | 451 | 1 | 448 | 3.30e-178 | 506 |
| MS.gene015453.t1 | AT1G12160 | 53.289 | 456 | 193 | 4 | 11 | 450 | 10 | 461 | 4.29e-177 | 504 |
| MS.gene015453.t1 | AT1G62580 | 56.082 | 485 | 173 | 8 | 1 | 449 | 2 | 482 | 8.13e-177 | 504 |
| MS.gene015453.t1 | AT1G62570 | 56.195 | 452 | 190 | 5 | 2 | 451 | 3 | 448 | 5.69e-175 | 498 |
| MS.gene015453.t1 | AT1G62540 | 53.556 | 478 | 190 | 5 | 1 | 451 | 1 | 473 | 7.66e-174 | 496 |
| MS.gene015453.t1 | AT1G62560 | 59.067 | 386 | 156 | 2 | 1 | 384 | 1 | 386 | 5.01e-170 | 483 |
| MS.gene015453.t1 | AT1G12130 | 53.219 | 466 | 185 | 8 | 8 | 450 | 8 | 463 | 5.13e-166 | 476 |
| MS.gene015453.t1 | AT1G62540 | 53.422 | 453 | 186 | 6 | 1 | 451 | 1 | 430 | 1.34e-163 | 468 |
| MS.gene015453.t1 | AT1G63340 | 53.982 | 452 | 161 | 5 | 1 | 449 | 2 | 409 | 2.68e-162 | 464 |
| MS.gene015453.t1 | AT1G63370 | 63.363 | 333 | 115 | 4 | 6 | 331 | 3 | 335 | 2.96e-154 | 441 |
| MS.gene015453.t1 | AT5G61290 | 48.758 | 443 | 207 | 8 | 11 | 442 | 14 | 447 | 1.05e-149 | 434 |
| MS.gene015453.t1 | AT5G07800 | 47.137 | 454 | 218 | 10 | 11 | 450 | 14 | 459 | 4.16e-145 | 422 |
| MS.gene015453.t1 | AT1G12200 | 64.095 | 337 | 113 | 5 | 1 | 330 | 1 | 336 | 1.65e-143 | 415 |
| MS.gene015453.t1 | AT1G62580 | 61.628 | 344 | 116 | 5 | 1 | 329 | 2 | 344 | 4.33e-133 | 388 |
| MS.gene015453.t1 | AT1G63390 | 58.125 | 160 | 61 | 4 | 2 | 156 | 3 | 161 | 5.62e-48 | 162 |
| MS.gene015453.t1 | AT5G45180 | 23.810 | 441 | 214 | 18 | 9 | 359 | 9 | 417 | 3.59e-15 | 77.8 |
| MS.gene015453.t1 | AT1G19250 | 28.340 | 247 | 121 | 10 | 8 | 224 | 8 | 228 | 6.02e-14 | 74.3 |
| MS.gene015453.t1 | AT5G11320 | 23.214 | 224 | 136 | 5 | 15 | 236 | 19 | 208 | 3.41e-12 | 68.2 |
| MS.gene015453.t1 | AT5G11320 | 23.214 | 224 | 136 | 5 | 15 | 236 | 19 | 208 | 5.17e-12 | 67.8 |
| MS.gene015453.t1 | AT4G28720 | 24.473 | 237 | 137 | 7 | 14 | 237 | 26 | 233 | 4.83e-11 | 65.1 |
Find 144 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTGGGGTGGGTGAAGG+TGG | 0.205048 | 5.4:-6284066 | MS.gene015453:CDS |
| CAATTTGCCTCGGGAGAGTA+TGG | 0.242875 | 5.4:-6284238 | MS.gene015453:CDS |
| TAAGAGGCACACTCATAATA+TGG | 0.255894 | 5.4:-6282068 | MS.gene015453:CDS |
| AAGAAAATAACCAGGAATAT+TGG | 0.264046 | 5.4:+6283942 | None:intergenic |
| CTCCATGGCTTTCCTTTGTT+GGG | 0.291150 | 5.4:-6282243 | MS.gene015453:CDS |
| AAGACAGAGGTGGTGTTTGC+TGG | 0.296073 | 5.4:-6284081 | MS.gene015453:CDS |
| ATATTATGAGTGTGCCTCTT+AGG | 0.298315 | 5.4:+6282070 | None:intergenic |
| TAACATGTGGCTTCATTCTA+TGG | 0.307413 | 5.4:-6282853 | MS.gene015453:intron |
| TGCAGTGGGACTACAATAAC+TGG | 0.310122 | 5.4:-6280978 | MS.gene015453:intron |
| GTGTTTGCTGGGGTGGGTGA+AGG | 0.313072 | 5.4:-6284069 | MS.gene015453:CDS |
| CACGGGCTCGGCCAATGTTC+AGG | 0.313423 | 5.4:-6282044 | MS.gene015453:intron |
| CATACTCTCCCGAGGCAAAT+TGG | 0.320024 | 5.4:+6284239 | None:intergenic |
| GGGTAGGTTGTAGTTCTAAT+AGG | 0.325138 | 5.4:-6282990 | MS.gene015453:intron |
| GCTCGGGTGTTCTGTAATTA+TGG | 0.325418 | 5.4:+6283321 | None:intergenic |
| AGAAAATAACCAGGAATATT+GGG | 0.332604 | 5.4:+6283943 | None:intergenic |
| GCTCCATGGCTTTCCTTTGT+TGG | 0.336615 | 5.4:-6282244 | MS.gene015453:CDS |
| CCGAGACTTCCCAATATTCC+TGG | 0.353788 | 5.4:-6283952 | MS.gene015453:intron |
| AGTGGATAAGCTTCCGGTTC+GGG | 0.354622 | 5.4:+6284286 | None:intergenic |
| GGGTGGGTGAAGGTGGGAAA+TGG | 0.367744 | 5.4:-6284059 | MS.gene015453:CDS |
| GCCGATGACTGCCACGTGGC+GGG | 0.373968 | 5.4:+6284446 | None:intergenic |
| TGGCTATGCATTTGCTTCCC+TGG | 0.375441 | 5.4:+6283341 | None:intergenic |
| AGAGGTGGTGTTTGCTGGGG+TGG | 0.381682 | 5.4:-6284076 | MS.gene015453:CDS |
| CTTTGTTGGGTTACCTTGGA+AGG | 0.382913 | 5.4:-6282230 | MS.gene015453:CDS |
| ATGGAGAACGCAAATGTATA+TGG | 0.387354 | 5.4:-6280920 | MS.gene015453:CDS |
| TGCTACTAAGCCTCCGGCGC+CGG | 0.388838 | 5.4:+6284422 | None:intergenic |
| AGAATCCGACCCACTCGGTT+TGG | 0.394740 | 5.4:-6284310 | MS.gene015453:CDS |
| TGGTTCGGAGTGAATTGTAT+AGG | 0.394896 | 5.4:+6284259 | None:intergenic |
| TACTTGTCACTTGAAGAATC+TGG | 0.396469 | 5.4:-6282097 | MS.gene015453:CDS |
| TACTTGATCTTGAAAGGGCT+CGG | 0.401139 | 5.4:+6283304 | None:intergenic |
| AGAAAGGGAGAGATTGTAGA+AGG | 0.404469 | 5.4:-6284182 | MS.gene015453:CDS |
| CACTCGGTTTGGACCCGAAC+CGG | 0.410482 | 5.4:-6284299 | MS.gene015453:CDS |
| CTTCGAGCGAGGAGAAGAAT+TGG | 0.410605 | 5.4:-6284361 | MS.gene015453:CDS |
| GGCTCGAGTGGATAAGCTTC+CGG | 0.414887 | 5.4:+6284280 | None:intergenic |
| GAGGTGGTGTTTGCTGGGGT+GGG | 0.423874 | 5.4:-6284075 | MS.gene015453:CDS |
| CTGCAGAGCAAGTGGATAGC+TGG | 0.424635 | 5.4:-6282184 | MS.gene015453:CDS |
| GAGTGGATAAGCTTCCGGTT+CGG | 0.425312 | 5.4:+6284285 | None:intergenic |
| GCAGTCATCGGCGCCGGCGC+CGG | 0.432692 | 5.4:-6284435 | MS.gene015453:CDS |
| GAGAAGAATTGGGCGGTTCA+TGG | 0.435788 | 5.4:-6284350 | MS.gene015453:CDS |
| TTCTTCTAAAAGGGTAATCT+CGG | 0.436563 | 5.4:+6284211 | None:intergenic |
| TCACCACACCATTGGTTTCA+AGG | 0.437617 | 5.4:+6282323 | None:intergenic |
| CACGTGGCAGTCATCGGCGC+CGG | 0.444457 | 5.4:-6284441 | MS.gene015453:CDS |
| ATCACTTACTTGATCTTGAA+AGG | 0.452689 | 5.4:+6283298 | None:intergenic |
| TTTAGAAGAAAAGAAGAGAA+AGG | 0.454059 | 5.4:-6284198 | MS.gene015453:CDS |
| TTGCTGGGGTGGGTGAAGGT+GGG | 0.455177 | 5.4:-6284065 | MS.gene015453:CDS |
| TTCCACCGGCGTTAGCTCCA+TGG | 0.457976 | 5.4:-6282258 | MS.gene015453:CDS |
| TGTGAGAAGTGGTGTTGCGG+TGG | 0.462747 | 5.4:+6284470 | None:intergenic |
| TCAGGCATTAATGCATGGCC+AGG | 0.465216 | 5.4:-6283359 | MS.gene015453:intron |
| TTTCCTTTGTTGGGTTACCT+TGG | 0.473219 | 5.4:-6282234 | MS.gene015453:CDS |
| TTAGAAGAAAAGAAGAGAAA+GGG | 0.478877 | 5.4:-6284197 | MS.gene015453:CDS |
| TGCTCTGCAGTTCAAACAAA+GGG | 0.480096 | 5.4:+6282197 | None:intergenic |
| AGACAGAGGTGGTGTTTGCT+GGG | 0.480683 | 5.4:-6284080 | MS.gene015453:CDS |
| GTTCTCCATTCTTCCATAGC+AGG | 0.489761 | 5.4:+6280934 | None:intergenic |
| GTCATCGGCGCCGGCGCCGG+AGG | 0.490906 | 5.4:-6284432 | MS.gene015453:CDS |
| CACTCCGAACCAATTTGCCT+CGG | 0.495195 | 5.4:-6284248 | MS.gene015453:CDS |
| CACTCGTCACGATAAGTCTC+AGG | 0.501205 | 5.4:+6280871 | None:intergenic |
| GACTTCATTGTACATTGCAC+AGG | 0.505864 | 5.4:-6282656 | MS.gene015453:CDS |
| TCATAATATGGGCACGGGCT+CGG | 0.507929 | 5.4:-6282056 | MS.gene015453:CDS |
| TTTCCTTTCCTTGAAACCAA+TGG | 0.508177 | 5.4:-6282331 | MS.gene015453:CDS |
| TCAGTGCGGTGTTCCTGCTA+TGG | 0.508464 | 5.4:-6280947 | MS.gene015453:CDS |
| GCGTGCTGCTACTAAGCCTC+CGG | 0.510739 | 5.4:+6284416 | None:intergenic |
| ATATGGCTACATCTAAGAAC+AGG | 0.511352 | 5.4:-6280903 | MS.gene015453:CDS |
| ACTTGATCTTGAAAGGGCTC+GGG | 0.512775 | 5.4:+6283305 | None:intergenic |
| AGAAGAATTGGGCGGTTCAT+GGG | 0.513280 | 5.4:-6284349 | MS.gene015453:CDS |
| AGTGGGTCGGATTCTATCGC+TGG | 0.516193 | 5.4:+6284318 | None:intergenic |
| GTGAGAAGTGGTGTTGCGGT+GGG | 0.518569 | 5.4:+6284471 | None:intergenic |
| TCACTTACTTGATCTTGAAA+GGG | 0.518929 | 5.4:+6283299 | None:intergenic |
| TTGAGATTGGTGATTTGGTG+AGG | 0.519792 | 5.4:-6284107 | MS.gene015453:CDS |
| TTCGAGCGAGGAGAAGAATT+GGG | 0.519829 | 5.4:-6284360 | MS.gene015453:CDS |
| TCTCCCGAGGCAAATTGGTT+CGG | 0.520142 | 5.4:+6284244 | None:intergenic |
| AGCCACATGTTATCATGGCC+AGG | 0.523909 | 5.4:+6282864 | None:intergenic |
| CCCCGCCACGTGGCAGTCAT+CGG | 0.524579 | 5.4:-6284447 | MS.gene015453:CDS |
| AATGAAGCCACATGTTATCA+TGG | 0.526082 | 5.4:+6282859 | None:intergenic |
| ACTCCGAACCAATTTGCCTC+GGG | 0.526203 | 5.4:-6284247 | MS.gene015453:CDS |
| AAGAGGCACACTCATAATAT+GGG | 0.527124 | 5.4:-6282067 | MS.gene015453:CDS |
| GGGAAAGGAGCAACCTTCCA+AGG | 0.527136 | 5.4:+6282217 | None:intergenic |
| ATCTACGGTCACCACACCAT+TGG | 0.533574 | 5.4:+6282315 | None:intergenic |
| TCTGTTGAAGAAGATAAGCT+TGG | 0.538010 | 5.4:-6282894 | MS.gene015453:CDS |
| CATTGCCCTTCCTTCAGAAG+AGG | 0.538791 | 5.4:-6282146 | MS.gene015453:CDS |
| GGAGATGACTAAAGATATTG+AGG | 0.539150 | 5.4:-6282125 | MS.gene015453:CDS |
| TGTAGAAGGTTCCCGAGTCA+TGG | 0.539602 | 5.4:-6284168 | MS.gene015453:CDS |
| ATTGACAGTGTTCATGAAGA+TGG | 0.540078 | 5.4:-6282716 | MS.gene015453:CDS |
| ACACCATTGGTTTCAAGGAA+AGG | 0.541856 | 5.4:+6282328 | None:intergenic |
| GAGATCTAGATCGGTGGAGA+GGG | 0.542522 | 5.4:-6284031 | MS.gene015453:CDS |
| AAGAATCTGGCATTCCTAAG+AGG | 0.544319 | 5.4:-6282084 | MS.gene015453:CDS |
| TCATCTCCTCTTCTGAAGGA+AGG | 0.544426 | 5.4:+6282140 | None:intergenic |
| CATCTCCTCTTCTGAAGGAA+GGG | 0.547731 | 5.4:+6282141 | None:intergenic |
| GGGTGTGAGAAGTGGTGTTG+CGG | 0.549595 | 5.4:+6284467 | None:intergenic |
| CCAGGAATATTGGGAAGTCT+CGG | 0.551573 | 5.4:+6283952 | None:intergenic |
| TTAGTCATCTCCTCTTCTGA+AGG | 0.554548 | 5.4:+6282136 | None:intergenic |
| GGGTGAAGGTGGGAAATGGA+CGG | 0.554732 | 5.4:-6284055 | MS.gene015453:CDS |
| ATCAAAACCTCTCCATGACT+CGG | 0.555813 | 5.4:+6284156 | None:intergenic |
| TGTTTGAACTGCAGAGCAAG+TGG | 0.561360 | 5.4:-6282192 | MS.gene015453:CDS |
| GCACGCGAGCTCCGACGAGA+AGG | 0.564731 | 5.4:-6284399 | MS.gene015453:CDS |
| GCGATAGAATCCGACCCACT+CGG | 0.565622 | 5.4:-6284315 | MS.gene015453:CDS |
| AATATGAACTTCTTTAGCAA+CGG | 0.565855 | 5.4:+6282926 | None:intergenic |
| TGCAGTTCAAACAAAGGGAA+AGG | 0.568166 | 5.4:+6282202 | None:intergenic |
| GATGCTGTTGTTGTTTGCAA+TGG | 0.576128 | 5.4:-6283988 | MS.gene015453:CDS |
| CGCCGATGACTGCCACGTGG+CGG | 0.576460 | 5.4:+6284445 | None:intergenic |
| GTGTTCCTGCTATGGAAGAA+TGG | 0.577997 | 5.4:-6280939 | MS.gene015453:CDS |
| ATATAAAGGCACCTGAACAT+TGG | 0.580551 | 5.4:+6282033 | None:intergenic |
| GATAAGCTTGGAAAGTTACC+TGG | 0.583301 | 5.4:-6282882 | MS.gene015453:CDS |
| TTGCTCTGCAGTTCAAACAA+AGG | 0.584189 | 5.4:+6282196 | None:intergenic |
| CACACTCATAATATGGGCAC+GGG | 0.585534 | 5.4:-6282061 | MS.gene015453:CDS |
| ACCGTAGATGACAATCGTGT+TGG | 0.587555 | 5.4:-6282301 | MS.gene015453:CDS |
| GACAGAGGTGGTGTTTGCTG+GGG | 0.588809 | 5.4:-6284079 | MS.gene015453:CDS |
| CCGATGACTGCCACGTGGCG+GGG | 0.590887 | 5.4:+6284447 | None:intergenic |
| TCGAGAAATATCAACCGCAC+TGG | 0.594589 | 5.4:+6282959 | None:intergenic |
| TGAGATCTAGATCGGTGGAG+AGG | 0.598722 | 5.4:-6284032 | MS.gene015453:CDS |
| TCCAACACGATTGTCATCTA+CGG | 0.599218 | 5.4:+6282300 | None:intergenic |
| CTACTTGATGTCCTTCTCGT+CGG | 0.601788 | 5.4:+6284388 | None:intergenic |
| TAGGTTGTAGTTCTAATAGG+TGG | 0.603871 | 5.4:-6282987 | MS.gene015453:CDS |
| CGGGTCCAAACCGAGTGGGT+CGG | 0.604890 | 5.4:+6284305 | None:intergenic |
| CGGCGCCGATGACTGCCACG+TGG | 0.606541 | 5.4:+6284442 | None:intergenic |
| AACCCAACAAAGGAAAGCCA+TGG | 0.607422 | 5.4:+6282241 | None:intergenic |
| GCACACTCATAATATGGGCA+CGG | 0.608045 | 5.4:-6282062 | MS.gene015453:CDS |
| ACGTGGCGGGGTGTGAGAAG+TGG | 0.608557 | 5.4:+6284459 | None:intergenic |
| TCAAAACCTCTCCATGACTC+GGG | 0.609566 | 5.4:+6284157 | None:intergenic |
| GTGAATTGTATAGGCTCGAG+TGG | 0.612633 | 5.4:+6284268 | None:intergenic |
| AATTTGCCTCGGGAGAGTAT+GGG | 0.615300 | 5.4:-6284237 | MS.gene015453:CDS |
| ATGGACGGTGAGATCTAGAT+CGG | 0.619336 | 5.4:-6284040 | MS.gene015453:CDS |
| GACGGTGAGATCTAGATCGG+TGG | 0.626733 | 5.4:-6284037 | MS.gene015453:CDS |
| GGTTCGGGTCCAAACCGAGT+GGG | 0.626979 | 5.4:+6284301 | None:intergenic |
| AGCCATGGAGCTAACGCCGG+TGG | 0.629282 | 5.4:+6282256 | None:intergenic |
| CAGGCATTAATGCATGGCCA+GGG | 0.629289 | 5.4:-6283358 | MS.gene015453:CDS |
| ATCGGTGGAGAGGGAATGTG+TGG | 0.636731 | 5.4:-6284022 | MS.gene015453:CDS |
| AAGGTTCCCGAGTCATGGAG+AGG | 0.638374 | 5.4:-6284163 | MS.gene015453:CDS |
| GGTTGATATTTCTCGAGACG+TGG | 0.639339 | 5.4:-6282952 | MS.gene015453:CDS |
| CTGAGACTTATCGTGACGAG+TGG | 0.640097 | 5.4:-6280870 | MS.gene015453:CDS |
| TTTCCTTGAAACCAATGGTG+TGG | 0.641481 | 5.4:-6282326 | MS.gene015453:CDS |
| CGGTTCGGGTCCAAACCGAG+TGG | 0.649786 | 5.4:+6284300 | None:intergenic |
| TTTGGTGAGGTTGAAGACAG+AGG | 0.656329 | 5.4:-6284094 | MS.gene015453:CDS |
| GAGCGAGGAGAAGAATTGGG+CGG | 0.661680 | 5.4:-6284357 | MS.gene015453:CDS |
| CAAGTAGTAGTCTTCGAGCG+AGG | 0.661706 | 5.4:-6284372 | MS.gene015453:CDS |
| TGAGACTTATCGTGACGAGT+GGG | 0.661820 | 5.4:-6280869 | MS.gene015453:CDS |
| TACCTGGCCATGATAACATG+TGG | 0.663783 | 5.4:-6282866 | MS.gene015453:CDS |
| CGGAAACCCATACTCTCCCG+AGG | 0.666291 | 5.4:+6284231 | None:intergenic |
| CTTCCAAGGTAACCCAACAA+AGG | 0.675077 | 5.4:+6282231 | None:intergenic |
| GAAAGCCATGGAGCTAACGC+CGG | 0.676417 | 5.4:+6282253 | None:intergenic |
| TGTTCATGAAGATGGTACAG+TGG | 0.683307 | 5.4:-6282708 | MS.gene015453:CDS |
| ACTTCATTGTACATTGCACA+GGG | 0.687673 | 5.4:-6282655 | MS.gene015453:intron |
| ACTTCTCACACCCCGCCACG+TGG | 0.689666 | 5.4:-6284457 | MS.gene015453:CDS |
| GGTGAGGTTGAAGACAGAGG+TGG | 0.690231 | 5.4:-6284091 | MS.gene015453:CDS |
| AATAGGTGGTGCTGCCAGTG+CGG | 0.737644 | 5.4:-6282973 | MS.gene015453:CDS |
| AACTGGATTGCTGATCAGTG+CGG | 0.766461 | 5.4:-6280961 | MS.gene015453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGCAATAAATAATTTA+AGG | + | chr5.4:6281709-6281728 | None:intergenic | 10.0% |
| !! | ATGAATAATCAAATAAAAAT+TGG | + | chr5.4:6281588-6281607 | None:intergenic | 10.0% |
| !! | TTTGATATAACAAAATATAA+AGG | + | chr5.4:6283271-6283290 | None:intergenic | 10.0% |
| !!! | ATGTTTTTATTTTTTTCAAT+TGG | - | chr5.4:6281515-6281534 | MS.gene015453:intron | 10.0% |
| !! | ATTGTACTTATTATTGTTAT+AGG | - | chr5.4:6281797-6281816 | MS.gene015453:intron | 15.0% |
| !! | GTTTAAAAGAAAAACTAATA+GGG | + | chr5.4:6282671-6282690 | None:intergenic | 15.0% |
| !! | AATAGTTAACTATCCTTTAA+TGG | - | chr5.4:6284257-6284276 | MS.gene015453:CDS | 20.0% |
| !! | ATTAGAAAACAGAATATAAG+AGG | + | chr5.4:6281443-6281462 | None:intergenic | 20.0% |
| !! | CAAAATTCAACTTAACAATT+CGG | - | chr5.4:6281895-6281914 | MS.gene015453:intron | 20.0% |
| !! | GGTTTAAAAGAAAAACTAAT+AGG | + | chr5.4:6282672-6282691 | None:intergenic | 20.0% |
| !! | TAACTAAAAAAGAATCCTAA+TGG | + | chr5.4:6282040-6282059 | None:intergenic | 20.0% |
| !! | TAGTCTTTAAACTAAAATGT+TGG | - | chr5.4:6281554-6281573 | MS.gene015453:intron | 20.0% |
| !!! | ATGTCTCTTTCTTATTTATA+TGG | - | chr5.4:6281371-6281390 | MS.gene015453:intron | 20.0% |
| !!! | TTTTAGTTTAAAGACTAACA+AGG | + | chr5.4:6281551-6281570 | None:intergenic | 20.0% |
| ! | AAGAAAATAACCAGGAATAT+TGG | + | chr5.4:6281348-6281367 | None:intergenic | 25.0% |
| ! | AATATGAACTTCTTTAGCAA+CGG | + | chr5.4:6282364-6282383 | None:intergenic | 25.0% |
| ! | ACAAATTCAAATAGCTCATT+TGG | - | chr5.4:6282087-6282106 | MS.gene015453:CDS | 25.0% |
| ! | AGAAAATAACCAGGAATATT+GGG | + | chr5.4:6281347-6281366 | None:intergenic | 25.0% |
| ! | ATATTGATACTAGTTCCATT+AGG | - | chr5.4:6282022-6282041 | MS.gene015453:intron | 25.0% |
| ! | ATTAGTAACCATAAACTGTT+TGG | - | chr5.4:6282500-6282519 | MS.gene015453:intron | 25.0% |
| ! | ATTCTTAATTGTTCAGACTT+AGG | - | chr5.4:6284117-6284136 | MS.gene015453:CDS | 25.0% |
| ! | CACTATAATACAAGAAGAAA+CGG | + | chr5.4:6284081-6284100 | None:intergenic | 25.0% |
| ! | GAAATGAAATTGAAAAAGCT+TGG | + | chr5.4:6281466-6281485 | None:intergenic | 25.0% |
| ! | GAACTGTTGGATTTAATTAA+CGG | + | chr5.4:6284004-6284023 | None:intergenic | 25.0% |
| ! | TTAGAAGAAAAGAAGAGAAA+GGG | - | chr5.4:6281090-6281109 | MS.gene015453:intron | 25.0% |
| ! | TTGAGGACTCAAATATATTT+AGG | - | chr5.4:6282828-6282847 | MS.gene015453:intron | 25.0% |
| ! | TTTAGAAGAAAAGAAGAGAA+AGG | - | chr5.4:6281089-6281108 | MS.gene015453:intron | 25.0% |
| !! | TTCTCTTCTTTTCTTCTAAA+AGG | + | chr5.4:6281089-6281108 | None:intergenic | 25.0% |
| !! | TTTTAAACCAGTTTATGTTG+TGG | - | chr5.4:6282683-6282702 | MS.gene015453:CDS | 25.0% |
| !!! | ATGGTAAAACTTGTTATCTA+TGG | - | chr5.4:6282453-6282472 | MS.gene015453:intron | 25.0% |
| !!! | TAAGTTTTAAATCGCAAATG+CGG | - | chr5.4:6282709-6282728 | MS.gene015453:CDS | 25.0% |
| !!! | TCTCTTCTTTTCTTCTAAAA+GGG | + | chr5.4:6281088-6281107 | None:intergenic | 25.0% |
| !!! | TTCTATCCATTTTTTGTGTT+GGG | - | chr5.4:6282277-6282296 | MS.gene015453:CDS | 25.0% |
| !!! | TTTATTAGGTTGTTTCTTCT+GGG | - | chr5.4:6283295-6283314 | MS.gene015453:intron | 25.0% |
| !!! | TTTTATTAGGTTGTTTCTTC+TGG | - | chr5.4:6283294-6283313 | MS.gene015453:intron | 25.0% |
| !!! | TTTTTTCAATTGGAATGACA+TGG | - | chr5.4:6281525-6281544 | MS.gene015453:intron | 25.0% |
| AAAAAATTGACTAGATCGCA+TGG | - | chr5.4:6283904-6283923 | MS.gene015453:intron | 30.0% | |
| AACATATCAGGTTCCATTAA+AGG | + | chr5.4:6284273-6284292 | None:intergenic | 30.0% | |
| AAGGATTGAATGGAAATCAA+TGG | - | chr5.4:6283822-6283841 | MS.gene015453:intron | 30.0% | |
| AAGGTTTAATTACCTGTGTT+TGG | - | chr5.4:6283943-6283962 | MS.gene015453:intron | 30.0% | |
| ACAGTTATCCAAACAGTTTA+TGG | + | chr5.4:6282511-6282530 | None:intergenic | 30.0% | |
| AGAACATGGTTAAAAAAACC+AGG | + | chr5.4:6284195-6284214 | None:intergenic | 30.0% | |
| AGAATACTCCATGATATAGA+CGG | - | chr5.4:6283678-6283697 | MS.gene015453:intron | 30.0% | |
| AGCATATGTAATATGTTCGA+TGG | + | chr5.4:6282219-6282238 | None:intergenic | 30.0% | |
| AGGTTTAATTACCTGTGTTT+GGG | - | chr5.4:6283944-6283963 | MS.gene015453:intron | 30.0% | |
| ATATATTTGAGTCCTCAACA+TGG | + | chr5.4:6282826-6282845 | None:intergenic | 30.0% | |
| ATCACTTACTTGATCTTGAA+AGG | + | chr5.4:6281992-6282011 | None:intergenic | 30.0% | |
| ATCATACTTGTACCTAGAAA+AGG | + | chr5.4:6282936-6282955 | None:intergenic | 30.0% | |
| CGTTTCTTCTTGTATTATAG+TGG | - | chr5.4:6284079-6284098 | MS.gene015453:CDS | 30.0% | |
| GTCAAATTAACATGAACTGT+TGG | + | chr5.4:6284017-6284036 | None:intergenic | 30.0% | |
| GTTGCTATAACATTGCAATT+TGG | + | chr5.4:6282779-6282798 | None:intergenic | 30.0% | |
| TAACCATGTTCTGTTTCAAA+AGG | - | chr5.4:6284203-6284222 | MS.gene015453:CDS | 30.0% | |
| TAATGGAACCTGATATGTTA+AGG | - | chr5.4:6284274-6284293 | MS.gene015453:CDS | 30.0% | |
| TACACATTCCTTAACATATC+AGG | + | chr5.4:6284285-6284304 | None:intergenic | 30.0% | |
| TATACAGAGCTAAAATATCC+TGG | - | chr5.4:6284174-6284193 | MS.gene015453:CDS | 30.0% | |
| TATCTATGGTGAGAATTAGA+TGG | - | chr5.4:6282467-6282486 | MS.gene015453:intron | 30.0% | |
| TATGGTTACTAATGTCATGA+TGG | + | chr5.4:6282493-6282512 | None:intergenic | 30.0% | |
| TCAAGATCAAGTAAGTGATA+TGG | - | chr5.4:6281993-6282012 | MS.gene015453:intron | 30.0% | |
| TCACTTACTTGATCTTGAAA+GGG | + | chr5.4:6281991-6282010 | None:intergenic | 30.0% | |
| TCCATTATTAGCTGGTAATT+CGG | - | chr5.4:6283596-6283615 | MS.gene015453:intron | 30.0% | |
| TGAATGGAAATCAATGGAAA+AGG | - | chr5.4:6283828-6283847 | MS.gene015453:intron | 30.0% | |
| ! | TGCAATTTAAAACCATGTTG+AGG | - | chr5.4:6282811-6282830 | MS.gene015453:intron | 30.0% |
| ! | TTCTTCTAAAAGGGTAATCT+CGG | + | chr5.4:6281079-6281098 | None:intergenic | 30.0% |
| !! | AGAGGTTTTGATGTATTTGA+AGG | - | chr5.4:6281142-6281161 | MS.gene015453:intron | 30.0% |
| !! | CTGCAATATAAATGTTTTGG+AGG | - | chr5.4:6282732-6282751 | MS.gene015453:intron | 30.0% |
| !! | TTGCATTTGACTTCATTTTG+TGG | + | chr5.4:6284153-6284172 | None:intergenic | 30.0% |
| !!! | AGATTTTGAGATTGGTGATT+TGG | - | chr5.4:6281175-6281194 | MS.gene015453:intron | 30.0% |
| !!! | CTTCTATCCATTTTTTGTGT+TGG | - | chr5.4:6282276-6282295 | MS.gene015453:CDS | 30.0% |
| !!! | TTTGCTGAAGATTTTGAGAT+TGG | - | chr5.4:6281167-6281186 | MS.gene015453:intron | 30.0% |
| AACCTACCCAACACAAAAAA+TGG | + | chr5.4:6282286-6282305 | None:intergenic | 35.0% | |
| AATGAAGCCACATGTTATCA+TGG | + | chr5.4:6282431-6282450 | None:intergenic | 35.0% | |
| AATGGAGGTTAACAGATCTA+TGG | + | chr5.4:6283582-6283601 | None:intergenic | 35.0% | |
| ACTTCATTGTACATTGCACA+GGG | - | chr5.4:6282632-6282651 | MS.gene015453:intron | 35.0% | |
| ACTTTATGAATGTGCTAGAG+TGG | + | chr5.4:6281398-6281417 | None:intergenic | 35.0% | |
| AGACTTTATGTCTCAATTGC+AGG | + | chr5.4:6282863-6282882 | None:intergenic | 35.0% | |
| AGGACACAAGAAATGGATAT+AGG | - | chr5.4:6283848-6283867 | MS.gene015453:intron | 35.0% | |
| ATATGGCTACATCTAAGAAC+AGG | - | chr5.4:6284384-6284403 | MS.gene015453:CDS | 35.0% | |
| ATATTATGAGTGTGCCTCTT+AGG | + | chr5.4:6283220-6283239 | None:intergenic | 35.0% | |
| ATGGAAAAGGACACAAGAAA+TGG | - | chr5.4:6283841-6283860 | MS.gene015453:intron | 35.0% | |
| ATGGAGAACGCAAATGTATA+TGG | - | chr5.4:6284367-6284386 | MS.gene015453:CDS | 35.0% | |
| ATGGAGGTTAACAGATCTAT+GGG | + | chr5.4:6283581-6283600 | None:intergenic | 35.0% | |
| ATTATTAGCTGGTAATTCGG+CGG | - | chr5.4:6283599-6283618 | MS.gene015453:intron | 35.0% | |
| ATTGACAGTGTTCATGAAGA+TGG | - | chr5.4:6282571-6282590 | MS.gene015453:intron | 35.0% | |
| CATGCATTAATGCCTGAAAA+AGG | + | chr5.4:6281925-6281944 | None:intergenic | 35.0% | |
| CATTGCAATTTGGACATTGT+CGG | + | chr5.4:6282769-6282788 | None:intergenic | 35.0% | |
| CGGTGGAGTAAAAATTATCT+TGG | - | chr5.4:6283782-6283801 | MS.gene015453:intron | 35.0% | |
| CTTAAGTCCACAACATAAAC+TGG | + | chr5.4:6282693-6282712 | None:intergenic | 35.0% | |
| GAATTACCAGCTAATAATGG+AGG | + | chr5.4:6283597-6283616 | None:intergenic | 35.0% | |
| GACATGAGAAGAAAATAACC+AGG | + | chr5.4:6281356-6281375 | None:intergenic | 35.0% | |
| GGAGATGACTAAAGATATTG+AGG | - | chr5.4:6283162-6283181 | MS.gene015453:intron | 35.0% | |
| GTAAGTTTCCGATGAATTGT+CGG | - | chr5.4:6283720-6283739 | MS.gene015453:intron | 35.0% | |
| GTACCTAGAAAAGGAACAAA+TGG | + | chr5.4:6282927-6282946 | None:intergenic | 35.0% | |
| TAACATGTGGCTTCATTCTA+TGG | - | chr5.4:6282434-6282453 | MS.gene015453:intron | 35.0% | |
| TCACTGAGATAAGGATTGAA+TGG | - | chr5.4:6283812-6283831 | MS.gene015453:intron | 35.0% | |
| TCTGTTGAAGAAGATAAGCT+TGG | - | chr5.4:6282393-6282412 | MS.gene015453:intron | 35.0% | |
| TGTTAACCTCCATTATTAGC+TGG | - | chr5.4:6283588-6283607 | MS.gene015453:intron | 35.0% | |
| TTGACTGAATTTCGAAACTC+TGG | - | chr5.4:6283881-6283900 | MS.gene015453:intron | 35.0% | |
| TTGCAATGTTATAGCAACGA+CGG | - | chr5.4:6282781-6282800 | MS.gene015453:intron | 35.0% | |
| TTTACTCTAAACCCAAACAC+AGG | + | chr5.4:6283958-6283977 | None:intergenic | 35.0% | |
| TTTCCTTTCCTTGAAACCAA+TGG | - | chr5.4:6282956-6282975 | MS.gene015453:CDS | 35.0% | |
| ! | AAGAGGCACACTCATAATAT+GGG | - | chr5.4:6283220-6283239 | MS.gene015453:intron | 35.0% |
| ! | CAATTCGGATAACCTTTTTC+AGG | - | chr5.4:6281910-6281929 | MS.gene015453:intron | 35.0% |
| ! | CGGCTGCAATATAAATGTTT+TGG | - | chr5.4:6282729-6282748 | MS.gene015453:intron | 35.0% |
| ! | GGTTTCCAATGTTTGAAATC+CGG | - | chr5.4:6283623-6283642 | MS.gene015453:intron | 35.0% |
| ! | TAAGAGGCACACTCATAATA+TGG | - | chr5.4:6283219-6283238 | MS.gene015453:intron | 35.0% |
| ! | TACTTGTCACTTGAAGAATC+TGG | - | chr5.4:6283190-6283209 | MS.gene015453:intron | 35.0% |
| ! | TCAGGAGGTTGTTGATAAAA+CGG | + | chr5.4:6283536-6283555 | None:intergenic | 35.0% |
| ! | TGTCCATTTGTTCCTTTTCT+AGG | - | chr5.4:6282921-6282940 | MS.gene015453:CDS | 35.0% |
| !! | ATATAAAGGCACCTGAACAT+TGG | + | chr5.4:6283257-6283276 | None:intergenic | 35.0% |
| !! | TAGGTTGTAGTTCTAATAGG+TGG | - | chr5.4:6282300-6282319 | MS.gene015453:CDS | 35.0% |
| !!! | ATCCATTTTTTGTGTTGGGT+AGG | - | chr5.4:6282281-6282300 | MS.gene015453:CDS | 35.0% |
| !!! | ATGCCTTTTGAAACAGAACA+TGG | + | chr5.4:6284209-6284228 | None:intergenic | 35.0% |
| !!! | CTTTTTCAGGCATTAATGCA+TGG | - | chr5.4:6281923-6281942 | MS.gene015453:intron | 35.0% |
| AAGAATCTGGCATTCCTAAG+AGG | - | chr5.4:6283203-6283222 | MS.gene015453:intron | 40.0% | |
| ACCGACAATTCATTGTTCGA+CGG | + | chr5.4:6283766-6283785 | None:intergenic | 40.0% | |
| AGAAAGGGAGAGATTGTAGA+AGG | - | chr5.4:6281105-6281124 | MS.gene015453:intron | 40.0% | |
| AGACGGTTCTGCAATTATCT+CGG | - | chr5.4:6283695-6283714 | MS.gene015453:intron | 40.0% | |
| AGGAATGTGTATTCTTGCAG+TGG | - | chr5.4:6284294-6284313 | MS.gene015453:CDS | 40.0% | |
| ATCAAAACCTCTCCATGACT+CGG | + | chr5.4:6281134-6281153 | None:intergenic | 40.0% | |
| CAGTTGTTCGATGCATCTAA+TGG | - | chr5.4:6283371-6283390 | MS.gene015453:intron | 40.0% | |
| CTCTACCGGATTTCAAACAT+TGG | + | chr5.4:6283631-6283650 | None:intergenic | 40.0% | |
| GACTTCATTGTACATTGCAC+AGG | - | chr5.4:6282631-6282650 | MS.gene015453:intron | 40.0% | |
| GATAAGCTTGGAAAGTTACC+TGG | - | chr5.4:6282405-6282424 | MS.gene015453:intron | 40.0% | |
| GCCGAATTACCAGCTAATAA+TGG | + | chr5.4:6283600-6283619 | None:intergenic | 40.0% | |
| GGAAAAACATGCTTGTAGAG+CGG | + | chr5.4:6283013-6283032 | None:intergenic | 40.0% | |
| GGAATGTGTATTCTTGCAGT+GGG | - | chr5.4:6284295-6284314 | MS.gene015453:CDS | 40.0% | |
| GGTTGTGATTCACTGAGATA+AGG | - | chr5.4:6283803-6283822 | MS.gene015453:intron | 40.0% | |
| TACTTGATCTTGAAAGGGCT+CGG | + | chr5.4:6281986-6282005 | None:intergenic | 40.0% | |
| TAGATCGCATGGAAGAAGAA+GGG | - | chr5.4:6283915-6283934 | MS.gene015453:intron | 40.0% | |
| TCCAACACGATTGTCATCTA+CGG | + | chr5.4:6282990-6283009 | None:intergenic | 40.0% | |
| TGCAATGTTATAGCAACGAC+GGG | - | chr5.4:6282782-6282801 | MS.gene015453:intron | 40.0% | |
| TGCAGTTCAAACAAAGGGAA+AGG | + | chr5.4:6283088-6283107 | None:intergenic | 40.0% | |
| TGCTCTGCAGTTCAAACAAA+GGG | + | chr5.4:6283093-6283112 | None:intergenic | 40.0% | |
| TGGAGGTTAACAGATCTATG+GGG | + | chr5.4:6283580-6283599 | None:intergenic | 40.0% | |
| TGTTCATGAAGATGGTACAG+TGG | - | chr5.4:6282579-6282598 | MS.gene015453:intron | 40.0% | |
| TTACTCCACCGACAATTCAT+CGG | + | chr5.4:6283731-6283750 | None:intergenic | 40.0% | |
| TTAGTCATCTCCTCTTCTGA+AGG | + | chr5.4:6283154-6283173 | None:intergenic | 40.0% | |
| TTGCAGAACCGTCTATATCA+TGG | + | chr5.4:6283689-6283708 | None:intergenic | 40.0% | |
| TTGCTCTGCAGTTCAAACAA+AGG | + | chr5.4:6283094-6283113 | None:intergenic | 40.0% | |
| TTGGACATTGTCGGTAAATG+TGG | + | chr5.4:6282760-6282779 | None:intergenic | 40.0% | |
| TTTCCTTGAAACCAATGGTG+TGG | - | chr5.4:6282961-6282980 | MS.gene015453:CDS | 40.0% | |
| TTTCCTTTGTTGGGTTACCT+TGG | - | chr5.4:6283053-6283072 | MS.gene015453:intron | 40.0% | |
| ! | ATGTTTGAAATCCGGTAGAG+TGG | - | chr5.4:6283631-6283650 | MS.gene015453:intron | 40.0% |
| ! | CTACAAGCATGTTTTTCCAC+CGG | - | chr5.4:6283015-6283034 | MS.gene015453:intron | 40.0% |
| ! | GGTACAGTGGTTTTCAAAGA+TGG | - | chr5.4:6282592-6282611 | MS.gene015453:intron | 40.0% |
| ! | TGGTTCGGAGTGAATTGTAT+AGG | + | chr5.4:6281031-6281050 | None:intergenic | 40.0% |
| !! | ACACCATTGGTTTCAAGGAA+AGG | + | chr5.4:6282962-6282981 | None:intergenic | 40.0% |
| !! | GATGCTGTTGTTGTTTGCAA+TGG | - | chr5.4:6281299-6281318 | MS.gene015453:intron | 40.0% |
| !! | GGGTAGGTTGTAGTTCTAAT+AGG | - | chr5.4:6282297-6282316 | MS.gene015453:CDS | 40.0% |
| !! | TTGAGATTGGTGATTTGGTG+AGG | - | chr5.4:6281180-6281199 | MS.gene015453:intron | 40.0% |
| !!! | TAGCTCATTTGGTTTTGCGT+TGG | - | chr5.4:6282098-6282117 | MS.gene015453:CDS | 40.0% |
| AACCCAACAAAGGAAAGCCA+TGG | + | chr5.4:6283049-6283068 | None:intergenic | 45.0% | |
| AACTGGATTGCTGATCAGTG+CGG | - | chr5.4:6284326-6284345 | MS.gene015453:CDS | 45.0% | |
| ACCGTAGATGACAATCGTGT+TGG | - | chr5.4:6282986-6283005 | MS.gene015453:CDS | 45.0% | |
| ACTTGATCTTGAAAGGGCTC+GGG | + | chr5.4:6281985-6282004 | None:intergenic | 45.0% | |
| AGAAGAATTGGGCGGTTCAT+GGG | - | chr5.4:6280938-6280957 | MS.gene015453:CDS | 45.0% | |
| AGTTTCCGATGAATTGTCGG+TGG | - | chr5.4:6283723-6283742 | MS.gene015453:intron | 45.0% | |
| ATGGACGGTGAGATCTAGAT+CGG | - | chr5.4:6281247-6281266 | MS.gene015453:intron | 45.0% | |
| ATGGTGCGTTACATTGGACA+CGG | + | chr5.4:6282200-6282219 | None:intergenic | 45.0% | |
| CACACTCATAATATGGGCAC+GGG | - | chr5.4:6283226-6283245 | MS.gene015453:intron | 45.0% | |
| CCAGGAATATTGGGAAGTCT+CGG | + | chr5.4:6281338-6281357 | None:intergenic | 45.0% | |
| CTACTTGATGTCCTTCTCGT+CGG | + | chr5.4:6280902-6280921 | None:intergenic | 45.0% | |
| CTAGATCGCATGGAAGAAGA+AGG | - | chr5.4:6283914-6283933 | MS.gene015453:intron | 45.0% | |
| CTCCATGGCTTTCCTTTGTT+GGG | - | chr5.4:6283044-6283063 | MS.gene015453:intron | 45.0% | |
| CTTCCAAGGTAACCCAACAA+AGG | + | chr5.4:6283059-6283078 | None:intergenic | 45.0% | |
| CTTTGTTGGGTTACCTTGGA+AGG | - | chr5.4:6283057-6283076 | MS.gene015453:intron | 45.0% | |
| GACAATTCATTGTTCGACGG+CGG | + | chr5.4:6283763-6283782 | None:intergenic | 45.0% | |
| GAGAAGAAAGGGGAATTGAC+GGG | + | chr5.4:6283449-6283468 | None:intergenic | 45.0% | |
| GCACACTCATAATATGGGCA+CGG | - | chr5.4:6283225-6283244 | MS.gene015453:intron | 45.0% | |
| GCCGTCGAACAATGAATTGT+CGG | - | chr5.4:6283762-6283781 | MS.gene015453:intron | 45.0% | |
| GCTCGGGTGTTCTGTAATTA+TGG | + | chr5.4:6281969-6281988 | None:intergenic | 45.0% | |
| GGAGAAGAAAGGGGAATTGA+CGG | + | chr5.4:6283450-6283469 | None:intergenic | 45.0% | |
| GTCGAACAATGAATTGTCGG+TGG | - | chr5.4:6283765-6283784 | MS.gene015453:intron | 45.0% | |
| GTGAATTGTATAGGCTCGAG+TGG | + | chr5.4:6281022-6281041 | None:intergenic | 45.0% | |
| GTGTTCCTGCTATGGAAGAA+TGG | - | chr5.4:6284348-6284367 | MS.gene015453:CDS | 45.0% | |
| GTTCTCCATTCTTCCATAGC+AGG | + | chr5.4:6284356-6284375 | None:intergenic | 45.0% | |
| TACCTGGCCATGATAACATG+TGG | - | chr5.4:6282421-6282440 | MS.gene015453:intron | 45.0% | |
| TAGGAAAACGCATCCGACAA+CGG | + | chr5.4:6283496-6283515 | None:intergenic | 45.0% | |
| TCAAAACCTCTCCATGACTC+GGG | + | chr5.4:6281133-6281152 | None:intergenic | 45.0% | |
| TCAAGTTACAGCCACTCTAC+CGG | + | chr5.4:6283645-6283664 | None:intergenic | 45.0% | |
| TCGAGAAATATCAACCGCAC+TGG | + | chr5.4:6282331-6282350 | None:intergenic | 45.0% | |
| TGAGACTTATCGTGACGAGT+GGG | - | chr5.4:6284418-6284437 | MS.gene015453:CDS | 45.0% | |
| TGCAGTGGGACTACAATAAC+TGG | - | chr5.4:6284309-6284328 | MS.gene015453:CDS | 45.0% | |
| TGCTTGACAGCAGTGAATCA+CGG | - | chr5.4:6284054-6284073 | MS.gene015453:CDS | 45.0% | |
| TGTTCGATGGTGCGTTACAT+TGG | + | chr5.4:6282206-6282225 | None:intergenic | 45.0% | |
| TGTTTGAACTGCAGAGCAAG+TGG | - | chr5.4:6283095-6283114 | MS.gene015453:intron | 45.0% | |
| TTCGAGCGAGGAGAAGAATT+GGG | - | chr5.4:6280927-6280946 | MS.gene015453:CDS | 45.0% | |
| TTTGGTGAGGTTGAAGACAG+AGG | - | chr5.4:6281193-6281212 | MS.gene015453:intron | 45.0% | |
| ! | AATTTGCCTCGGGAGAGTAT+GGG | - | chr5.4:6281050-6281069 | MS.gene015453:intron | 45.0% |
| ! | CATCTCCTCTTCTGAAGGAA+GGG | + | chr5.4:6283149-6283168 | None:intergenic | 45.0% |
| ! | GGAGGTTGTTGATAAAACGG+CGG | + | chr5.4:6283533-6283552 | None:intergenic | 45.0% |
| ! | GGTTGATATTTCTCGAGACG+TGG | - | chr5.4:6282335-6282354 | MS.gene015453:CDS | 45.0% |
| ! | TCATCTCCTCTTCTGAAGGA+AGG | + | chr5.4:6283150-6283169 | None:intergenic | 45.0% |
| !! | TCACCACACCATTGGTTTCA+AGG | + | chr5.4:6282967-6282986 | None:intergenic | 45.0% |
| !!! | AGAAATAATTTTTTTAAAAA+AGG | - | chr5.4:6281845-6281864 | MS.gene015453:intron | 5.0% |
| !!! | TTATATCAAATTTTTTTATT+AGG | - | chr5.4:6283281-6283300 | MS.gene015453:intron | 5.0% |
| AAGACAGAGGTGGTGTTTGC+TGG | - | chr5.4:6281206-6281225 | MS.gene015453:intron | 50.0% | |
| ACTCCGAACCAATTTGCCTC+GGG | - | chr5.4:6281040-6281059 | MS.gene015453:intron | 50.0% | |
| AGACAGAGGTGGTGTTTGCT+GGG | - | chr5.4:6281207-6281226 | MS.gene015453:intron | 50.0% | |
| AGCCACATGTTATCATGGCC+AGG | + | chr5.4:6282426-6282445 | None:intergenic | 50.0% | |
| AGTGGATAAGCTTCCGGTTC+GGG | + | chr5.4:6281004-6281023 | None:intergenic | 50.0% | |
| ATCTACGGTCACCACACCAT+TGG | + | chr5.4:6282975-6282994 | None:intergenic | 50.0% | |
| ATTAGCTGGTAATTCGGCGG+CGG | - | chr5.4:6283602-6283621 | MS.gene015453:intron | 50.0% | |
| ATTGGACACGGACGTCACTT+TGG | + | chr5.4:6282188-6282207 | None:intergenic | 50.0% | |
| CAAGTAGTAGTCTTCGAGCG+AGG | - | chr5.4:6280915-6280934 | MS.gene015453:CDS | 50.0% | |
| CAATTTGCCTCGGGAGAGTA+TGG | - | chr5.4:6281049-6281068 | MS.gene015453:intron | 50.0% | |
| CACTCCGAACCAATTTGCCT+CGG | - | chr5.4:6281039-6281058 | MS.gene015453:intron | 50.0% | |
| CACTCGTCACGATAAGTCTC+AGG | + | chr5.4:6284419-6284438 | None:intergenic | 50.0% | |
| CAGGCATTAATGCATGGCCA+GGG | - | chr5.4:6281929-6281948 | MS.gene015453:intron | 50.0% | |
| CATACTCTCCCGAGGCAAAT+TGG | + | chr5.4:6281051-6281070 | None:intergenic | 50.0% | |
| CATTGCCCTTCCTTCAGAAG+AGG | - | chr5.4:6283141-6283160 | MS.gene015453:intron | 50.0% | |
| CCGAGACTTCCCAATATTCC+TGG | - | chr5.4:6281335-6281354 | MS.gene015453:intron | 50.0% | |
| CTGAGACTTATCGTGACGAG+TGG | - | chr5.4:6284417-6284436 | MS.gene015453:CDS | 50.0% | |
| CTTCGAGCGAGGAGAAGAAT+TGG | - | chr5.4:6280926-6280945 | MS.gene015453:CDS | 50.0% | |
| GAGAAGAATTGGGCGGTTCA+TGG | - | chr5.4:6280937-6280956 | MS.gene015453:CDS | 50.0% | |
| GAGATCTAGATCGGTGGAGA+GGG | - | chr5.4:6281256-6281275 | MS.gene015453:intron | 50.0% | |
| GAGTGGATAAGCTTCCGGTT+CGG | + | chr5.4:6281005-6281024 | None:intergenic | 50.0% | |
| GCTCCATGGCTTTCCTTTGT+TGG | - | chr5.4:6283043-6283062 | MS.gene015453:intron | 50.0% | |
| GGCGGTGACAACACAGATTT+AGG | + | chr5.4:6283515-6283534 | None:intergenic | 50.0% | |
| TCAGGCATTAATGCATGGCC+AGG | - | chr5.4:6281928-6281947 | MS.gene015453:intron | 50.0% | |
| TCATAATATGGGCACGGGCT+CGG | - | chr5.4:6283231-6283250 | MS.gene015453:intron | 50.0% | |
| TCATCAACAACCGCCGTTGT+CGG | - | chr5.4:6283480-6283499 | MS.gene015453:intron | 50.0% | |
| TCTCCCGAGGCAAATTGGTT+CGG | + | chr5.4:6281046-6281065 | None:intergenic | 50.0% | |
| TGAGATCTAGATCGGTGGAG+AGG | - | chr5.4:6281255-6281274 | MS.gene015453:intron | 50.0% | |
| TGGAAGAAGAAGGGACGACA+AGG | - | chr5.4:6283924-6283943 | MS.gene015453:intron | 50.0% | |
| TGGCTATGCATTTGCTTCCC+TGG | + | chr5.4:6281949-6281968 | None:intergenic | 50.0% | |
| TGTAGAAGGTTCCCGAGTCA+TGG | - | chr5.4:6281119-6281138 | MS.gene015453:intron | 50.0% | |
| ! | AAAGGGGAATTGACGGGTCT+AGG | + | chr5.4:6283443-6283462 | None:intergenic | 50.0% |
| ! | AAGGGGAATTGACGGGTCTA+GGG | + | chr5.4:6283442-6283461 | None:intergenic | 50.0% |
| AAGGTTCCCGAGTCATGGAG+AGG | - | chr5.4:6281124-6281143 | MS.gene015453:intron | 55.0% | |
| ACCGGGAAGGTGGAGAAGAA+AGG | + | chr5.4:6283461-6283480 | None:intergenic | 55.0% | |
| AGAATCCGACCCACTCGGTT+TGG | - | chr5.4:6280977-6280996 | MS.gene015453:intron | 55.0% | |
| AGTGGGTCGGATTCTATCGC+TGG | + | chr5.4:6280972-6280991 | None:intergenic | 55.0% | |
| ATCGGTGGAGAGGGAATGTG+TGG | - | chr5.4:6281265-6281284 | MS.gene015453:intron | 55.0% | |
| CAACAACCTCCTGAGACCGT+TGG | - | chr5.4:6283542-6283561 | MS.gene015453:intron | 55.0% | |
| CCCTTTCTTCTCCACCTTCC+CGG | - | chr5.4:6283457-6283476 | MS.gene015453:intron | 55.0% | |
| CCGGGAAGGTGGAGAAGAAA+GGG | + | chr5.4:6283460-6283479 | None:intergenic | 55.0% | |
| CGGGAAGGTGGAGAAGAAAG+GGG | + | chr5.4:6283459-6283478 | None:intergenic | 55.0% | |
| CTGCAGAGCAAGTGGATAGC+TGG | - | chr5.4:6283103-6283122 | MS.gene015453:intron | 55.0% | |
| GAAAACGCATCCGACAACGG+CGG | + | chr5.4:6283493-6283512 | None:intergenic | 55.0% | |
| GAAAGCCATGGAGCTAACGC+CGG | + | chr5.4:6283037-6283056 | None:intergenic | 55.0% | |
| GACGGTGAGATCTAGATCGG+TGG | - | chr5.4:6281250-6281269 | MS.gene015453:intron | 55.0% | |
| GAGCGAGGAGAAGAATTGGG+CGG | - | chr5.4:6280930-6280949 | MS.gene015453:CDS | 55.0% | |
| GCGATAGAATCCGACCCACT+CGG | - | chr5.4:6280972-6280991 | MS.gene015453:CDS | 55.0% | |
| GGCTCGAGTGGATAAGCTTC+CGG | + | chr5.4:6281010-6281029 | None:intergenic | 55.0% | |
| GGGAAAGGAGCAACCTTCCA+AGG | + | chr5.4:6283073-6283092 | None:intergenic | 55.0% | |
| GGGTGAAGGTGGGAAATGGA+CGG | - | chr5.4:6281232-6281251 | MS.gene015453:intron | 55.0% | |
| GGTGAGGTTGAAGACAGAGG+TGG | - | chr5.4:6281196-6281215 | MS.gene015453:intron | 55.0% | |
| TCAGTGCGGTGTTCCTGCTA+TGG | - | chr5.4:6284340-6284359 | MS.gene015453:CDS | 55.0% | |
| ! | AGGGGAATTGACGGGTCTAG+GGG | + | chr5.4:6283441-6283460 | None:intergenic | 55.0% |
| ! | GACAGAGGTGGTGTTTGCTG+GGG | - | chr5.4:6281208-6281227 | MS.gene015453:intron | 55.0% |
| ! | GGGTGTGAGAAGTGGTGTTG+CGG | + | chr5.4:6280823-6280842 | None:intergenic | 55.0% |
| !! | AACGGCGGTTGTTGATGACC+GGG | + | chr5.4:6283478-6283497 | None:intergenic | 55.0% |
| !! | AATAGGTGGTGCTGCCAGTG+CGG | - | chr5.4:6282314-6282333 | MS.gene015453:CDS | 55.0% |
| !! | CAACGGCGGTTGTTGATGAC+CGG | + | chr5.4:6283479-6283498 | None:intergenic | 55.0% |
| !! | GTGAGAAGTGGTGTTGCGGT+GGG | + | chr5.4:6280819-6280838 | None:intergenic | 55.0% |
| !! | GTTGTTGATGACCGGGAAGG+TGG | + | chr5.4:6283471-6283490 | None:intergenic | 55.0% |
| !! | TGTGAGAAGTGGTGTTGCGG+TGG | + | chr5.4:6280820-6280839 | None:intergenic | 55.0% |
| AATCCTCCGCCAACGGTCTC+AGG | + | chr5.4:6283554-6283573 | None:intergenic | 60.0% | |
| CAACCTCCTGAGACCGTTGG+CGG | - | chr5.4:6283545-6283564 | MS.gene015453:intron | 60.0% | |
| CGGAAACCCATACTCTCCCG+AGG | + | chr5.4:6281059-6281078 | None:intergenic | 60.0% | |
| GGGGAACAATCCTCCGCCAA+CGG | + | chr5.4:6283561-6283580 | None:intergenic | 60.0% | |
| GGGTGGGTGAAGGTGGGAAA+TGG | - | chr5.4:6281228-6281247 | MS.gene015453:intron | 60.0% | |
| GGTTCGGGTCCAAACCGAGT+GGG | + | chr5.4:6280989-6281008 | None:intergenic | 60.0% | |
| TTCCACCGGCGTTAGCTCCA+TGG | - | chr5.4:6283029-6283048 | MS.gene015453:intron | 60.0% | |
| TTGCTGGGGTGGGTGAAGGT+GGG | - | chr5.4:6281222-6281241 | MS.gene015453:intron | 60.0% | |
| TTTGCTGGGGTGGGTGAAGG+TGG | - | chr5.4:6281221-6281240 | MS.gene015453:intron | 60.0% | |
| ! | AGAGGTGGTGTTTGCTGGGG+TGG | - | chr5.4:6281211-6281230 | MS.gene015453:intron | 60.0% |
| ! | GAGGTGGTGTTTGCTGGGGT+GGG | - | chr5.4:6281212-6281231 | MS.gene015453:intron | 60.0% |
| ! | GCGTGCTGCTACTAAGCCTC+CGG | + | chr5.4:6280874-6280893 | None:intergenic | 60.0% |
| ! | GTGTTTGCTGGGGTGGGTGA+AGG | - | chr5.4:6281218-6281237 | MS.gene015453:intron | 60.0% |
| !! | CACTCGGTTTGGACCCGAAC+CGG | - | chr5.4:6280988-6281007 | MS.gene015453:intron | 60.0% |
| !! | GCGGTTGTTGATGACCGGGA+AGG | + | chr5.4:6283474-6283493 | None:intergenic | 60.0% |
| ACTTCTCACACCCCGCCACG+TGG | - | chr5.4:6280830-6280849 | MS.gene015453:CDS | 65.0% | |
| AGCCATGGAGCTAACGCCGG+TGG | + | chr5.4:6283034-6283053 | None:intergenic | 65.0% | |
| CACGGGCTCGGCCAATGTTC+AGG | - | chr5.4:6283243-6283262 | MS.gene015453:intron | 65.0% | |
| CGGGTCCAAACCGAGTGGGT+CGG | + | chr5.4:6280985-6281004 | None:intergenic | 65.0% | |
| TGCTACTAAGCCTCCGGCGC+CGG | + | chr5.4:6280868-6280887 | None:intergenic | 65.0% | |
| ! | ACGTGGCGGGGTGTGAGAAG+TGG | + | chr5.4:6280831-6280850 | None:intergenic | 65.0% |
| ! | CGGTTCGGGTCCAAACCGAG+TGG | + | chr5.4:6280990-6281009 | None:intergenic | 65.0% |
| CACGTGGCAGTCATCGGCGC+CGG | - | chr5.4:6280846-6280865 | MS.gene015453:CDS | 70.0% | |
| CCCCGCCACGTGGCAGTCAT+CGG | - | chr5.4:6280840-6280859 | MS.gene015453:CDS | 70.0% | |
| CCGATGACTGCCACGTGGCG+GGG | + | chr5.4:6280843-6280862 | None:intergenic | 70.0% | |
| CCTCCGCCAACGGTCTCAGG+AGG | + | chr5.4:6283551-6283570 | None:intergenic | 70.0% | |
| CCTCCTGAGACCGTTGGCGG+AGG | - | chr5.4:6283548-6283567 | MS.gene015453:intron | 70.0% | |
| CGCCGATGACTGCCACGTGG+CGG | + | chr5.4:6280845-6280864 | None:intergenic | 70.0% | |
| GCACGCGAGCTCCGACGAGA+AGG | - | chr5.4:6280888-6280907 | MS.gene015453:CDS | 70.0% | |
| GCCGATGACTGCCACGTGGC+GGG | + | chr5.4:6280844-6280863 | None:intergenic | 70.0% | |
| !! | CGGCGCCGATGACTGCCACG+TGG | + | chr5.4:6280848-6280867 | None:intergenic | 75.0% |
| !!! | GCAGTCATCGGCGCCGGCGC+CGG | - | chr5.4:6280852-6280871 | MS.gene015453:CDS | 80.0% |
| !!! | GTCATCGGCGCCGGCGCCGG+AGG | - | chr5.4:6280855-6280874 | MS.gene015453:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 6280813 | 6284496 | 6280813 | ID=MS.gene015453 |
| chr5.4 | mRNA | 6280813 | 6284496 | 6280813 | ID=MS.gene015453.t1;Parent=MS.gene015453 |
| chr5.4 | exon | 6283953 | 6284496 | 6283953 | ID=MS.gene015453.t1.exon1;Parent=MS.gene015453.t1 |
| chr5.4 | CDS | 6283953 | 6284496 | 6283953 | ID=cds.MS.gene015453.t1;Parent=MS.gene015453.t1 |
| chr5.4 | exon | 6283307 | 6283377 | 6283307 | ID=MS.gene015453.t1.exon2;Parent=MS.gene015453.t1 |
| chr5.4 | CDS | 6283307 | 6283377 | 6283307 | ID=cds.MS.gene015453.t1;Parent=MS.gene015453.t1 |
| chr5.4 | exon | 6282854 | 6283006 | 6282854 | ID=MS.gene015453.t1.exon3;Parent=MS.gene015453.t1 |
| chr5.4 | CDS | 6282854 | 6283006 | 6282854 | ID=cds.MS.gene015453.t1;Parent=MS.gene015453.t1 |
| chr5.4 | exon | 6282656 | 6282738 | 6282656 | ID=MS.gene015453.t1.exon4;Parent=MS.gene015453.t1 |
| chr5.4 | CDS | 6282656 | 6282738 | 6282656 | ID=cds.MS.gene015453.t1;Parent=MS.gene015453.t1 |
| chr5.4 | exon | 6282045 | 6282366 | 6282045 | ID=MS.gene015453.t1.exon5;Parent=MS.gene015453.t1 |
| chr5.4 | CDS | 6282045 | 6282366 | 6282045 | ID=cds.MS.gene015453.t1;Parent=MS.gene015453.t1 |
| chr5.4 | exon | 6280813 | 6280995 | 6280813 | ID=MS.gene015453.t1.exon6;Parent=MS.gene015453.t1 |
| chr5.4 | CDS | 6280813 | 6280995 | 6280813 | ID=cds.MS.gene015453.t1;Parent=MS.gene015453.t1 |
| Gene Sequence |
| Protein sequence |
