AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63578

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63578.t1 MTR_3g437580 96.053 456 16 1 1 454 1 456 0.0 914
MS.gene63578.t1 MTR_3g437580 95.044 343 15 1 1 341 1 343 0.0 682
MS.gene63578.t1 MTR_5g012130 48.322 447 202 10 9 441 11 442 5.17e-139 406
MS.gene63578.t1 MTR_8g037880 42.697 445 228 9 11 444 4 432 1.52e-116 348
MS.gene63578.t1 MTR_8g037910 42.459 431 227 8 11 435 4 419 1.51e-115 346
MS.gene63578.t1 MTR_5g012130 50.898 334 144 8 9 337 31 349 1.54e-105 317
MS.gene63578.t1 MTR_8g037910 43.465 329 170 6 11 338 4 317 5.29e-91 279
MS.gene63578.t1 MTR_5g012130 48.855 262 114 8 9 265 31 277 9.94e-71 226
MS.gene63578.t1 MTR_8g037910 41.549 284 150 6 11 293 4 272 9.21e-70 223
MS.gene63578.t1 MTR_3g109520 25.229 218 126 5 13 228 41 223 3.89e-16 80.5
MS.gene63578.t1 MTR_7g107710 25.214 234 137 5 11 241 6 204 1.86e-15 78.2
MS.gene63578.t1 MTR_7g107690 25.506 247 137 6 7 242 4 214 2.43e-14 74.7
MS.gene63578.t1 MTR_2g450510 27.099 262 140 10 9 245 3 238 4.26e-14 74.7
MS.gene63578.t1 MTR_1g008380 25.068 367 168 14 13 310 44 372 1.29e-13 72.8
MS.gene63578.t1 MTR_2g043850 28.293 205 104 7 11 198 14 192 2.68e-13 72.4
MS.gene63578.t1 MTR_1g046230 21.307 352 178 10 13 298 26 344 6.87e-13 70.5
MS.gene63578.t1 MTR_6g086870 24.658 219 129 8 13 228 22 207 1.09e-12 69.7
MS.gene63578.t1 MTR_3g088925 21.552 348 176 8 11 296 7 319 1.70e-12 69.3
MS.gene63578.t1 MTR_2g450310 26.482 253 135 10 9 236 3 229 2.20e-12 69.3
MS.gene63578.t1 MTR_7g099330 24.074 216 125 5 13 228 26 202 7.97e-12 67.4
MS.gene63578.t1 MTR_3g088945 21.264 348 177 8 11 296 7 319 8.12e-12 67.0
MS.gene63578.t1 MTR_1g011630 21.834 229 142 6 13 241 18 209 9.52e-12 67.0
MS.gene63578.t1 MTR_2g020630 27.500 240 125 9 11 227 14 227 1.12e-11 67.0
MS.gene63578.t1 MTR_1088s0010 29.771 131 64 3 9 136 3 108 2.82e-11 62.0
MS.gene63578.t1 MTR_2g044140 28.293 205 104 8 11 198 14 192 4.56e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63578.t1 AT5G61290 68.293 451 136 5 6 452 11 458 0.0 647
MS.gene63578.t1 AT5G07800 66.886 456 138 5 3 450 8 458 0.0 641
MS.gene63578.t1 AT1G62620 46.429 448 219 9 6 443 8 444 1.96e-136 400
MS.gene63578.t1 AT1G63370 46.205 448 220 9 6 443 8 444 7.80e-136 398
MS.gene63578.t1 AT1G62560 45.133 452 225 9 1 441 1 440 1.33e-129 383
MS.gene63578.t1 AT1G65860 45.393 445 221 8 8 443 10 441 2.49e-128 379
MS.gene63578.t1 AT1G12200 47.523 444 214 10 8 441 11 445 2.56e-126 375
MS.gene63578.t1 AT1G62620 47.595 395 188 8 6 392 8 391 6.96e-123 363
MS.gene63578.t1 AT1G12140 45.638 447 219 9 7 443 9 441 1.72e-121 362
MS.gene63578.t1 AT1G12140 45.638 447 219 9 7 443 9 441 1.72e-121 362
MS.gene63578.t1 AT1G62600 45.233 451 220 10 7 443 9 446 2.53e-121 361
MS.gene63578.t1 AT1G62560 46.324 408 198 8 1 399 1 396 2.71e-121 359
MS.gene63578.t1 AT1G12160 42.549 463 229 7 5 443 6 455 2.94e-121 362
MS.gene63578.t1 AT1G12140 45.291 446 220 9 7 443 9 439 2.16e-118 354
MS.gene63578.t1 AT1G62540 45.169 445 222 8 8 443 10 441 4.02e-117 351
MS.gene63578.t1 AT1G62570 44.176 455 230 9 7 452 9 448 6.00e-116 348
MS.gene63578.t1 AT1G62580 46.358 453 219 11 2 443 5 444 1.03e-113 342
MS.gene63578.t1 AT1G62540 43.404 470 219 10 8 443 10 466 2.25e-113 342
MS.gene63578.t1 AT1G12130 42.765 463 223 9 8 443 10 457 2.30e-112 339
MS.gene63578.t1 AT1G62600 47.089 395 184 9 7 389 9 390 6.59e-110 330
MS.gene63578.t1 AT1G63340 44.619 446 197 12 2 443 5 404 2.22e-108 327
MS.gene63578.t1 AT1G62580 43.416 486 218 14 2 443 5 477 2.78e-105 322
MS.gene63578.t1 AT1G62540 43.146 445 213 9 8 443 10 423 4.54e-105 319
MS.gene63578.t1 AT1G63370 46.746 338 164 7 6 338 8 334 2.87e-103 311
MS.gene63578.t1 AT1G12200 50.448 335 153 8 8 338 11 336 2.06e-98 300
MS.gene63578.t1 AT1G62580 50.000 350 147 10 2 335 5 342 1.79e-88 274
MS.gene63578.t1 AT1G63390 50.000 160 69 5 7 161 9 162 1.93e-33 124
MS.gene63578.t1 AT5G45180 25.567 485 243 19 6 405 8 459 8.37e-23 100
MS.gene63578.t1 AT1G19250 29.339 242 124 8 8 227 10 226 7.60e-17 83.2
MS.gene63578.t1 AT4G13260 23.611 216 132 4 13 228 30 212 4.43e-12 67.4
MS.gene63578.t1 AT4G32540 25.403 248 136 8 3 241 7 214 5.16e-12 67.8
MS.gene63578.t1 AT5G25620 24.231 260 151 8 13 261 34 258 5.38e-12 67.8
MS.gene63578.t1 AT5G25620 24.231 260 151 8 13 261 34 258 5.46e-12 67.8
MS.gene63578.t1 AT4G32540 25.403 248 136 8 3 241 7 214 5.84e-12 67.8
MS.gene63578.t1 AT2G33230 22.581 217 136 6 13 228 34 219 8.77e-12 67.4
MS.gene63578.t1 AT4G13260 23.611 216 132 4 13 228 30 212 1.10e-11 67.0
MS.gene63578.t1 AT5G11320 22.271 229 139 6 13 241 19 208 1.59e-11 65.9
MS.gene63578.t1 AT1G04610 21.719 221 133 6 13 228 39 224 2.31e-11 65.9
MS.gene63578.t1 AT4G28720 24.034 233 141 6 13 242 27 226 3.43e-11 65.5

Find 117 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCATGTTACCTTTAA+TGG 0.061625 3.2:-25241688 None:intergenic
CCTTTAATGGATGGCAATTT+TGG 0.152109 3.2:-25241675 None:intergenic
TGGATAGCTCAATTGCTTTC+TGG 0.169069 3.2:+25244973 MS.gene63578:CDS
CCTCATGTCTCTACCTTTCT+TGG 0.191684 3.2:-25241418 None:intergenic
CCAAAATTGCCATCCATTAA+AGG 0.193960 3.2:+25241675 MS.gene63578:CDS
CTACCTTTCTTGGTAGAAAA+TGG 0.198982 3.2:-25241408 None:intergenic
GTTAACAATGGAGTTAATTA+TGG 0.259199 3.2:-25246357 None:intergenic
GTTGGAATGCTTGATGATTA+TGG 0.281682 3.2:+25241540 MS.gene63578:CDS
GAAAAGAGTTTCTACCTAAA+GGG 0.316983 3.2:-25241311 None:intergenic
GGCATTCCTACTCATGATAT+TGG 0.332854 3.2:+25245069 MS.gene63578:CDS
ACCTCATTGTGGAATGGTTC+TGG 0.335360 3.2:-25242090 None:intergenic
GGATAGCTCAATTGCTTTCT+GGG 0.344271 3.2:+25244974 MS.gene63578:CDS
TTCTATAACCACCATTCCTT+TGG 0.367024 3.2:-25244345 None:intergenic
CTAGTTCTATTGCTATATCT+TGG 0.369423 3.2:-25242470 None:intergenic
TTATCTCTCTTGCTGCTACT+AGG 0.370276 3.2:-25241197 None:intergenic
TGCCTGCTACTTCTCTTTCA+TGG 0.373660 3.2:-25245050 None:intergenic
AAATGCATAGTCACATTTAC+AGG 0.376176 3.2:+25242064 MS.gene63578:CDS
AGAAAAGAGTTTCTACCTAA+AGG 0.378578 3.2:-25241312 None:intergenic
AATTAACTCCATTGTTAACT+TGG 0.387019 3.2:+25246361 MS.gene63578:CDS
CTTGATGATTATGGTGTTTG+TGG 0.391657 3.2:+25241549 MS.gene63578:CDS
TTGTGATAAGGTTGTGGAAG+AGG 0.392803 3.2:+25241611 MS.gene63578:CDS
ATTCCTTTGGTGTCAAGAAA+AGG 0.410339 3.2:-25244332 None:intergenic
AGATGATAAGGTTCAATACT+AGG 0.413544 3.2:+25241508 MS.gene63578:CDS
GACTCTATTGTGTATTGTAC+AGG 0.418054 3.2:+25243737 MS.gene63578:CDS
TTACCCTTCCATCCTCTTCA+AGG 0.418369 3.2:-25243685 None:intergenic
TTGCAGTATTGTGACAAATA+TGG 0.418374 3.2:+25246278 MS.gene63578:intron
AATACTAGGGTTAATTATGT+TGG 0.420112 3.2:+25241522 MS.gene63578:CDS
TTGGGTTAAGAGAGATGATA+AGG 0.423127 3.2:+25241496 MS.gene63578:CDS
TTCTCCATTCTTGTAATGGT+GGG 0.427729 3.2:-25246316 None:intergenic
ATTGAGCTATCCACATTGCT+TGG 0.438044 3.2:-25244963 None:intergenic
AAGGACTTTGAAGGGCCTCT+TGG 0.444012 3.2:-25246421 None:intergenic
TGCTATATCTTGGCCACTAT+AGG 0.444873 3.2:-25242460 None:intergenic
ATAGAAGGTGAAGACCCTTT+AGG 0.453442 3.2:+25241297 MS.gene63578:CDS
TAAGAGATGGAGAAAGTAAA+GGG 0.454093 3.2:-25244406 None:intergenic
AGTCCTTACTTCACTCAACT+TGG 0.454993 3.2:+25246437 MS.gene63578:CDS
GTGAACCCCATGACTTCTCT+TGG 0.457699 3.2:-25241378 None:intergenic
GATGCAGTGGTTGTTGCCAC+TGG 0.458878 3.2:+25241639 MS.gene63578:CDS
GTAAGAGATGGAGAAAGTAA+AGG 0.463625 3.2:-25244407 None:intergenic
TTTCTCCATTCTTGTAATGG+TGG 0.463654 3.2:-25246317 None:intergenic
TTCCTTTGGTGTCAAGAAAA+GGG 0.465946 3.2:-25244331 None:intergenic
TTGAGCTATCCACATTGCTT+GGG 0.470765 3.2:-25244962 None:intergenic
ATAAGTATTTCAACATGGCC+AGG 0.471295 3.2:-25241447 None:intergenic
TGGAAAGTGTGCTCATACAA+AGG 0.471300 3.2:-25244383 None:intergenic
CTTGCTGCTACTAGGCCTGC+TGG 0.473674 3.2:-25241189 None:intergenic
TCGAAGAATGTGTGTGTAAT+CGG 0.476098 3.2:+25241159 MS.gene63578:CDS
CAAAGAGAAGGATTGTGATA+AGG 0.477585 3.2:+25241599 MS.gene63578:CDS
TTCATCATTTCCTCCCATGA+TGG 0.480463 3.2:-25245009 None:intergenic
TATATAACAGGTTGTGGTGG+TGG 0.481545 3.2:+25242428 MS.gene63578:intron
GAAGGATTGTGATAAGGTTG+TGG 0.494699 3.2:+25241605 MS.gene63578:CDS
GTAATCGGTGCTGGACCAGC+AGG 0.501353 3.2:+25241174 MS.gene63578:CDS
GAGTGAAGTAAGGACTTTGA+AGG 0.503755 3.2:-25246430 None:intergenic
GCAAGAGAGATAAGAAAAGA+AGG 0.509739 3.2:+25241207 MS.gene63578:CDS
GACTCCCACCATTACAAGAA+TGG 0.510699 3.2:+25246312 MS.gene63578:CDS
ATCATGTTACCTTTAATGGA+TGG 0.517087 3.2:-25241684 None:intergenic
TTACACACACATTCTTCGAT+TGG 0.520487 3.2:-25241155 None:intergenic
ATTGCTTGGGACTCAAAGAA+AGG 0.521937 3.2:-25244949 None:intergenic
AGTCCAAGTTGAGTGAAGTA+AGG 0.523677 3.2:-25246440 None:intergenic
ACAATCTCCAAGAGAAGTCA+TGG 0.524334 3.2:+25241371 MS.gene63578:CDS
AATGTGTGTGTAATCGGTGC+TGG 0.528554 3.2:+25241165 MS.gene63578:CDS
AGAGACATGAGGAGGTTCCC+TGG 0.530130 3.2:+25241429 MS.gene63578:CDS
GTCAAGAAAAGGGAAGCTAT+AGG 0.535288 3.2:-25244321 None:intergenic
TTGCTTGGGACTCAAAGAAA+GGG 0.544898 3.2:-25244948 None:intergenic
TACCTGTGGATGAAGGTGTA+AGG 0.545448 3.2:-25242580 None:intergenic
GATGATAAGGTTCAATACTA+GGG 0.548336 3.2:+25241509 MS.gene63578:CDS
CGCCCTTGAAGAGGATGGAA+GGG 0.549203 3.2:+25243682 MS.gene63578:CDS
TTTGTGGAAATAATTTGAAG+TGG 0.551830 3.2:+25241565 MS.gene63578:CDS
GTGGTTGGAAATTCCTATAG+TGG 0.553536 3.2:+25242447 MS.gene63578:CDS
GATTGTTAGAAGCAAAGAGA+AGG 0.554625 3.2:+25241587 MS.gene63578:CDS
TTATCAATACCTGTGGATGA+AGG 0.559071 3.2:-25242587 None:intergenic
AGATATAGCAATAGAACTAG+TGG 0.561789 3.2:+25242473 MS.gene63578:CDS
TACCCTTCCATCCTCTTCAA+GGG 0.564528 3.2:-25243684 None:intergenic
ATCTCTTGATACTATAACTG+AGG 0.565528 3.2:+25242527 MS.gene63578:CDS
TGGAGACATATCGAGACTCA+TGG 0.565705 3.2:+25246381 MS.gene63578:CDS
ATTCTTCGATTGGTTCGTCT+CGG 0.568258 3.2:-25241145 None:intergenic
TAACAGGTTGTGGTGGTGGT+TGG 0.569616 3.2:+25242432 MS.gene63578:intron
ATTTATATAACAGGTTGTGG+TGG 0.571818 3.2:+25242425 MS.gene63578:intron
ATGCCTATAAAAGTAAGAGA+TGG 0.574083 3.2:-25244419 None:intergenic
GTTATAGAAGATGACAGAGT+GGG 0.574813 3.2:+25244359 MS.gene63578:CDS
GCAGATAGACGCCCTTGAAG+AGG 0.576782 3.2:+25243673 MS.gene63578:intron
ATAGACGCCCTTGAAGAGGA+TGG 0.578976 3.2:+25243677 MS.gene63578:CDS
TACCATGAAAGAGAAGTAGC+AGG 0.579370 3.2:+25245048 MS.gene63578:CDS
ACGCCCTTGAAGAGGATGGA+AGG 0.580659 3.2:+25243681 MS.gene63578:CDS
AATGCTCAGGAATGGATACA+TGG 0.580865 3.2:+25242031 MS.gene63578:intron
GATATAGCAATAGAACTAGT+GGG 0.582747 3.2:+25242474 MS.gene63578:CDS
AAATATACCTCATTGTGGAA+TGG 0.585498 3.2:-25242096 None:intergenic
GACCTTACACCTTCATCCAC+AGG 0.589301 3.2:+25242578 MS.gene63578:CDS
TCTTGACACCAAAGGAATGG+TGG 0.594626 3.2:+25244337 MS.gene63578:CDS
CAATCTCCAAGAGAAGTCAT+GGG 0.596018 3.2:+25241372 MS.gene63578:CDS
GAACAGAATCATGACATTGG+AGG 0.596567 3.2:+25241249 MS.gene63578:CDS
CTAGAACAGAATCATGACAT+TGG 0.599604 3.2:+25241246 MS.gene63578:CDS
TTCATGGTAGAACTCCTCGA+TGG 0.601727 3.2:-25245034 None:intergenic
AAATCTCCAATATCATGAGT+AGG 0.603660 3.2:-25245075 None:intergenic
GGAGACATATCGAGACTCAT+GGG 0.605682 3.2:+25246382 MS.gene63578:CDS
TAAGTATTTCAACATGGCCA+GGG 0.607233 3.2:-25241446 None:intergenic
AGAACTAGTGGGAATAGCAA+AGG 0.607437 3.2:+25242485 MS.gene63578:CDS
TCTCTTGATACTATAACTGA+GGG 0.608259 3.2:+25242528 MS.gene63578:CDS
AAAAGTATTGCCATCATGGG+AGG 0.610259 3.2:+25244999 MS.gene63578:CDS
TTGGTTCGTCTCGGAAACCA+TGG 0.616433 3.2:-25241136 None:intergenic
GAGATGGAGAAAGTAAAGGG+TGG 0.617386 3.2:-25244403 None:intergenic
AGTGAAGTAAGGACTTTGAA+GGG 0.617403 3.2:-25246429 None:intergenic
TGGTTGAGCGTAATGACCAG+TGG 0.620721 3.2:-25241655 None:intergenic
ATATGTCTCCAAGTTAACAA+TGG 0.636025 3.2:-25246369 None:intergenic
GACAAATATGGTGAGAATGT+AGG 0.639510 3.2:+25246290 MS.gene63578:CDS
CCAAGAAAGGTAGAGACATG+AGG 0.642980 3.2:+25241418 MS.gene63578:CDS
AGACTCATGGGATGATGATG+AGG 0.660730 3.2:+25246394 MS.gene63578:CDS
GATACATAAGTATTTCAACA+TGG 0.661901 3.2:-25241452 None:intergenic
ATAGCAAATATACCTCATTG+TGG 0.662065 3.2:-25242101 None:intergenic
TCCAGAACCATTCCACAATG+AGG 0.662680 3.2:+25242089 MS.gene63578:CDS
ACTCTATTGTGTATTGTACA+GGG 0.671646 3.2:+25243738 MS.gene63578:CDS
TCTTTGAGTCCCAAGCAATG+TGG 0.679786 3.2:+25244953 MS.gene63578:CDS
GGTTATAGAAGATGACAGAG+TGG 0.685485 3.2:+25244358 MS.gene63578:CDS
TGATGATGAGGTGCTCCAAG+AGG 0.686965 3.2:+25246406 MS.gene63578:CDS
AGAAAGGTAGAGACATGAGG+AGG 0.707282 3.2:+25241421 MS.gene63578:CDS
ATCATGACATTGGAGGACAA+TGG 0.715553 3.2:+25241256 MS.gene63578:CDS
TTATAGAAGATGACAGAGTG+GGG 0.721299 3.2:+25244360 MS.gene63578:CDS
AATCTCCAAGAGAAGTCATG+GGG 0.726188 3.2:+25241373 MS.gene63578:CDS
GGAAATGATGAAATCCATCG+AGG 0.746562 3.2:+25245020 MS.gene63578:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAACAAAATCT+TGG + chr3.2:25245108-25245127 MS.gene63578:intron 10.0%
!! AAGAAAAATGTATAAATATA+GGG + chr3.2:25244067-25244086 MS.gene63578:intron 10.0%
!! AATATAAAATTAACAAAATC+TGG + chr3.2:25243021-25243040 MS.gene63578:intron 10.0%
!! ATGATATTTGAATAATAATT+TGG + chr3.2:25243467-25243486 MS.gene63578:intron 10.0%
!! ATTATTAATTAGAGTTATAA+AGG + chr3.2:25244126-25244145 MS.gene63578:intron 10.0%
!! TAAGAAAAATGTATAAATAT+AGG + chr3.2:25244066-25244085 MS.gene63578:intron 10.0%
!! TGATATTTGAATAATAATTT+GGG + chr3.2:25243468-25243487 MS.gene63578:intron 10.0%
!! TTATTAATTAGAGTTATAAA+GGG + chr3.2:25244127-25244146 MS.gene63578:intron 10.0%
!!! CAAACTTTTTTTTTTTTTTT+TGG + chr3.2:25246016-25246035 MS.gene63578:intron 10.0%
!!! TAAGAAAATATATTTTTCTA+TGG - chr3.2:25245376-25245395 None:intergenic 10.0%
!!! TTTTATTAAATAAAGTAGTT+GGG + chr3.2:25243333-25243352 MS.gene63578:intron 10.0%
!!! TTTTTTACTATTTTGATAAA+AGG - chr3.2:25245448-25245467 None:intergenic 10.0%
!! AAAATTCTTAAAATGTCATA+AGG + chr3.2:25245464-25245483 MS.gene63578:intron 15.0%
!! AAATTCTTAAAATGTCATAA+GGG + chr3.2:25245465-25245484 MS.gene63578:intron 15.0%
!! AATATAATATCATACGAAAA+TGG + chr3.2:25245919-25245938 MS.gene63578:intron 15.0%
!! AATTAAACAAATTTGAATTG+AGG + chr3.2:25243147-25243166 MS.gene63578:intron 15.0%
!! AATTATAGAGTATACTAATA+TGG + chr3.2:25242726-25242745 MS.gene63578:intron 15.0%
!! ACACTTCTAATTAAAAATAT+GGG + chr3.2:25244562-25244581 MS.gene63578:intron 15.0%
!! AGAAAAATGTATAAATATAG+GGG + chr3.2:25244068-25244087 MS.gene63578:intron 15.0%
!! ATAATTATATATTAATGCTC+AGG + chr3.2:25242018-25242037 MS.gene63578:intron 15.0%
!! ATTATAGAGTATACTAATAT+GGG + chr3.2:25242727-25242746 MS.gene63578:intron 15.0%
!! CAATTGAAAAATTAGTTATA+AGG + chr3.2:25244471-25244490 MS.gene63578:intron 15.0%
!! CTAAAAGAACTATTAAAATT+AGG + chr3.2:25243211-25243230 MS.gene63578:intron 15.0%
!! GTGCATATTATAAAATTTAA+TGG - chr3.2:25245168-25245187 None:intergenic 15.0%
!! TAATTTATGGAAAAATGAAA+AGG + chr3.2:25246217-25246236 MS.gene63578:intron 15.0%
!! TATGATGATAAAAATATAGA+AGG + chr3.2:25241282-25241301 MS.gene63578:CDS 15.0%
!! TATTAATTAGAGTTATAAAG+GGG + chr3.2:25244128-25244147 MS.gene63578:intron 15.0%
!! TCATCTAAAAATACTTATTT+GGG + chr3.2:25245632-25245651 MS.gene63578:intron 15.0%
!! TCTATAATACATGTAAATAA+TGG + chr3.2:25242335-25242354 MS.gene63578:intron 15.0%
!! TGACAATAAAAAACTATTAA+TGG - chr3.2:25245494-25245513 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+GGG - chr3.2:25242890-25242909 None:intergenic 15.0%
!! TTCATCTAAAAATACTTATT+TGG + chr3.2:25245631-25245650 MS.gene63578:intron 15.0%
!!! ATACAAGACTTTTATTTATA+TGG + chr3.2:25241871-25241890 MS.gene63578:intron 15.0%
!!! ATTTTCTCATAATAAGTAAA+GGG + chr3.2:25241936-25241955 MS.gene63578:intron 15.0%
!!! CTTTTATTAAATAAAGTAGT+TGG + chr3.2:25243332-25243351 MS.gene63578:intron 15.0%
!!! TAGAAGTAATTTTTTTTGTA+GGG - chr3.2:25242830-25242849 None:intergenic 15.0%
!!! TTAGAAGTAATTTTTTTTGT+AGG - chr3.2:25242831-25242850 None:intergenic 15.0%
!!! TTCATTTTTCCATAAATTAA+TGG - chr3.2:25246216-25246235 None:intergenic 15.0%
!!! TTTTTAACAAAACAATATCT+TGG + chr3.2:25245139-25245158 MS.gene63578:intron 15.0%
!! AAAAGTGGAATATATTGAAT+TGG + chr3.2:25244152-25244171 MS.gene63578:intron 20.0%
!! AAACCTATGAAAATTAAGTA+AGG - chr3.2:25242801-25242820 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr3.2:25244091-25244110 MS.gene63578:intron 20.0%
!! AATTATCTGATTGTAATATG+AGG + chr3.2:25246094-25246113 MS.gene63578:intron 20.0%
!! ACATTATATGAGTATTTGAA+AGG + chr3.2:25243557-25243576 MS.gene63578:intron 20.0%
!! AGAACTATTAAAATTAGGTA+AGG + chr3.2:25243216-25243235 MS.gene63578:intron 20.0%
!! AGAGATATAATTGTGATATA+TGG - chr3.2:25242218-25242237 None:intergenic 20.0%
!! ATACGAAAATGGTATTATTT+GGG + chr3.2:25245930-25245949 MS.gene63578:intron 20.0%
!! ATTATAATTATCAATACCTG+TGG - chr3.2:25242597-25242616 None:intergenic 20.0%
!! ATTATATTAAGTGTGGTTTA+AGG + chr3.2:25242680-25242699 MS.gene63578:intron 20.0%
!! ATTGAGATAAATAATGCATA+AGG + chr3.2:25243359-25243378 MS.gene63578:intron 20.0%
!! CAGAAGAAAAAAAAACTTAA+GGG + chr3.2:25243188-25243207 MS.gene63578:intron 20.0%
!! CATCTAAAAATACTTATTTG+GGG + chr3.2:25245633-25245652 MS.gene63578:intron 20.0%
!! GAAAAAAATATACAAAGACT+TGG - chr3.2:25241897-25241916 None:intergenic 20.0%
!! GACACTTCTAATTAAAAATA+TGG + chr3.2:25244561-25244580 MS.gene63578:intron 20.0%
!! GTTCAAAAATTTAAGAGTTT+AGG - chr3.2:25242891-25242910 None:intergenic 20.0%
!! TATATAGTAACGTGTTATAT+TGG + chr3.2:25243642-25243661 MS.gene63578:intron 20.0%
!! TATCTCTAACATGAAATAAA+TGG - chr3.2:25241739-25241758 None:intergenic 20.0%
!! TATTGAAAATTGAAATGACT+CGG + chr3.2:25244190-25244209 MS.gene63578:intron 20.0%
!! TGAATATGATATAAAGAAAC+AGG + chr3.2:25241759-25241778 MS.gene63578:intron 20.0%
!! TTTATTTATATAACAGGTTG+TGG + chr3.2:25242422-25242441 MS.gene63578:intron 20.0%
!! TTTGTTAGATTTCAACTAAT+GGG + chr3.2:25245280-25245299 MS.gene63578:intron 20.0%
!!! AATACATGTAAATAATGGAA+GGG + chr3.2:25242340-25242359 MS.gene63578:intron 20.0%
!!! ACATTTGATATACATACTTT+TGG - chr3.2:25244887-25244906 None:intergenic 20.0%
!!! AGAGAATGAACAATTTTAAA+AGG - chr3.2:25245707-25245726 None:intergenic 20.0%
!!! ATATGGGTTAAATATGTTTT+TGG + chr3.2:25242743-25242762 MS.gene63578:intron 20.0%
!!! ATCTAAAAGATTTTTGTGAA+TGG + chr3.2:25241472-25241491 MS.gene63578:CDS 20.0%
!!! ATTTGTTAGATTTCAACTAA+TGG + chr3.2:25245279-25245298 MS.gene63578:intron 20.0%
!!! ATTTTTCAATTGCTGATTTT+AGG - chr3.2:25244463-25244482 None:intergenic 20.0%
!!! CATTTTCTCATAATAAGTAA+AGG + chr3.2:25241935-25241954 MS.gene63578:intron 20.0%
!!! GAGAATGAACAATTTTAAAA+GGG - chr3.2:25245706-25245725 None:intergenic 20.0%
!!! TAATACATGTAAATAATGGA+AGG + chr3.2:25242339-25242358 MS.gene63578:intron 20.0%
!!! TGTTTTTGAAATTCATCAAT+TGG + chr3.2:25244282-25244301 MS.gene63578:intron 20.0%
!!! TTAGGTTAATTACCTTTTTA+GGG - chr3.2:25244445-25244464 None:intergenic 20.0%
!!! TTTAGGTTAATTACCTTTTT+AGG - chr3.2:25244446-25244465 None:intergenic 20.0%
! AAAAGATTCAAAACAAATCG+AGG - chr3.2:25245554-25245573 None:intergenic 25.0%
! AAACAAATTTGAATTGAGGA+GGG + chr3.2:25243151-25243170 MS.gene63578:intron 25.0%
! AAAGATTCAAAACAAATCGA+GGG - chr3.2:25245553-25245572 None:intergenic 25.0%
! AAATATCATCTCTCTTTAAC+AGG + chr3.2:25243614-25243633 MS.gene63578:intron 25.0%
! AAATCCCACTAATTTGAAAA+GGG - chr3.2:25245263-25245282 None:intergenic 25.0%
! AATACTAGGGTTAATTATGT+TGG + chr3.2:25241522-25241541 MS.gene63578:CDS 25.0%
! AATATCATCTCTCTTTAACA+GGG + chr3.2:25243615-25243634 MS.gene63578:intron 25.0%
! AATTAACTCCATTGTTAACT+TGG + chr3.2:25246361-25246380 MS.gene63578:CDS 25.0%
! ATATAAAGAAACAGGAAGAA+AGG + chr3.2:25241767-25241786 MS.gene63578:intron 25.0%
! ATTTACATGTATTATAGAGC+AGG - chr3.2:25242333-25242352 None:intergenic 25.0%
! ATTTGGTCACACAAAAAAAA+AGG + chr3.2:25243808-25243827 MS.gene63578:intron 25.0%
! CATAACTACTTTACTCTAAA+AGG - chr3.2:25243991-25244010 None:intergenic 25.0%
! CATACGAAAATGGTATTATT+TGG + chr3.2:25245929-25245948 MS.gene63578:intron 25.0%
! CTTCATACCGAATATATAAA+TGG + chr3.2:25244509-25244528 MS.gene63578:intron 25.0%
! GAAAATCATGTTACCTTTAA+TGG - chr3.2:25241691-25241710 None:intergenic 25.0%
! GATACATAAGTATTTCAACA+TGG - chr3.2:25241455-25241474 None:intergenic 25.0%
! GCAGAAGAAAAAAAAACTTA+AGG + chr3.2:25243187-25243206 MS.gene63578:intron 25.0%
! GTCATAGAGAAATTCTAATA+TGG + chr3.2:25243764-25243783 MS.gene63578:intron 25.0%
! GTTAACAATGGAGTTAATTA+TGG - chr3.2:25246360-25246379 None:intergenic 25.0%
! TAAAAATACTTATTTGGGGA+AGG + chr3.2:25245637-25245656 MS.gene63578:intron 25.0%
! TAAACAAATTTGAATTGAGG+AGG + chr3.2:25243150-25243169 MS.gene63578:intron 25.0%
! TATATATTAATGCTCAGGAA+TGG + chr3.2:25242023-25242042 MS.gene63578:intron 25.0%
! TCAGAAGCCATTTATATATT+CGG - chr3.2:25244519-25244538 None:intergenic 25.0%
! TTGTTAGATTTCAACTAATG+GGG + chr3.2:25245281-25245300 MS.gene63578:intron 25.0%
! TTTATAATGTAATACTCCAG+AGG + chr3.2:25241793-25241812 MS.gene63578:intron 25.0%
! TTTGTGGAAATAATTTGAAG+TGG + chr3.2:25241565-25241584 MS.gene63578:CDS 25.0%
!! AAACAAACTTTGTTGTAACA+AGG - chr3.2:25242861-25242880 None:intergenic 25.0%
!! AAAGATTTTTGTGAATGGTT+TGG + chr3.2:25241477-25241496 MS.gene63578:CDS 25.0%
!! AAGATTTTTGTGAATGGTTT+GGG + chr3.2:25241478-25241497 MS.gene63578:CDS 25.0%
!! AGTAGGGTTAAATATGTTTT+TGG - chr3.2:25243274-25243293 None:intergenic 25.0%
!! AGTCCTTACTTAATTTTCAT+AGG + chr3.2:25242795-25242814 MS.gene63578:intron 25.0%
!! TAAAAGGTCCCAATTTTATA+GGG + chr3.2:25243247-25243266 MS.gene63578:intron 25.0%
!! TTAAAAGGTCCCAATTTTAT+AGG + chr3.2:25243246-25243265 MS.gene63578:intron 25.0%
!!! TAAAAGTTCCCAGTTTTATA+GGG - chr3.2:25242770-25242789 None:intergenic 25.0%
!!! TGCATACTTTTTAGTTTCAA+TGG + chr3.2:25244856-25244875 MS.gene63578:intron 25.0%
!!! TTAAAAGTTCCCAGTTTTAT+AGG - chr3.2:25242771-25242790 None:intergenic 25.0%
!!! TTTATGACAATTTTTTGCAG+AGG + chr3.2:25243059-25243078 MS.gene63578:intron 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG - chr3.2:25243258-25243277 None:intergenic 25.0%
AAATATACCTCATTGTGGAA+TGG - chr3.2:25242099-25242118 None:intergenic 30.0%
AAATCTCCAATATCATGAGT+AGG - chr3.2:25245078-25245097 None:intergenic 30.0%
AAATGCATAGTCACATTTAC+AGG + chr3.2:25242064-25242083 MS.gene63578:CDS 30.0%
AAGATTCAAAACAAATCGAG+GGG - chr3.2:25245552-25245571 None:intergenic 30.0%
ACTCTATTGTGTATTGTACA+GGG + chr3.2:25243738-25243757 MS.gene63578:CDS 30.0%
AGAAAAGAGTTTCTACCTAA+AGG - chr3.2:25241315-25241334 None:intergenic 30.0%
AGAAATTCTAATATGGTCAC+AGG + chr3.2:25243771-25243790 MS.gene63578:intron 30.0%
AGATATAGCAATAGAACTAG+TGG + chr3.2:25242473-25242492 MS.gene63578:CDS 30.0%
AGATGATAAGGTTCAATACT+AGG + chr3.2:25241508-25241527 MS.gene63578:CDS 30.0%
AGGACCAAAGAAATAGTATT+TGG + chr3.2:25243791-25243810 MS.gene63578:intron 30.0%
AGGTAAGGACTAAACTTAAA+AGG + chr3.2:25243231-25243250 MS.gene63578:intron 30.0%
AGTAAATGACTCAGTTAATC+CGG + chr3.2:25244235-25244254 MS.gene63578:intron 30.0%
AGTCAAGAGCTCAATTAATT+CGG - chr3.2:25244032-25244051 None:intergenic 30.0%
ATAGCAAATATACCTCATTG+TGG - chr3.2:25242104-25242123 None:intergenic 30.0%
ATATCATCTCTCTTTAACAG+GGG + chr3.2:25243616-25243635 MS.gene63578:intron 30.0%
ATATGTCTCCAAGTTAACAA+TGG - chr3.2:25246372-25246391 None:intergenic 30.0%
ATCATGTTACCTTTAATGGA+TGG - chr3.2:25241687-25241706 None:intergenic 30.0%
ATCTCTATAAATTATCCACG+TGG + chr3.2:25242261-25242280 MS.gene63578:intron 30.0%
ATCTCTTGATACTATAACTG+AGG + chr3.2:25242527-25242546 MS.gene63578:CDS 30.0%
ATGCCTATAAAAGTAAGAGA+TGG - chr3.2:25244422-25244441 None:intergenic 30.0%
ATGGAGCGAGTAATAATTAA+AGG + chr3.2:25244259-25244278 MS.gene63578:intron 30.0%
ATTTATATAACAGGTTGTGG+TGG + chr3.2:25242425-25242444 MS.gene63578:intron 30.0%
CAAATCCCACTAATTTGAAA+AGG - chr3.2:25245264-25245283 None:intergenic 30.0%
CTGTCTCATTATATTAAGTG+TGG + chr3.2:25242673-25242692 MS.gene63578:intron 30.0%
GAAAAGAGTTTCTACCTAAA+GGG - chr3.2:25241314-25241333 None:intergenic 30.0%
GAAGCCATCTATGTATAAAT+AGG - chr3.2:25245190-25245209 None:intergenic 30.0%
GAGTTTGTCATCATAATTAG+AGG + chr3.2:25243443-25243462 MS.gene63578:intron 30.0%
GATATAGCAATAGAACTAGT+GGG + chr3.2:25242474-25242493 MS.gene63578:CDS 30.0%
GATGATAAGGTTCAATACTA+GGG + chr3.2:25241509-25241528 MS.gene63578:CDS 30.0%
GTGCATGATTGAATAAGATA+TGG + chr3.2:25246131-25246150 MS.gene63578:intron 30.0%
GTTTGTATATGAGTATGAGT+AGG + chr3.2:25244790-25244809 MS.gene63578:intron 30.0%
TAAGAGATGGAGAAAGTAAA+GGG - chr3.2:25244409-25244428 None:intergenic 30.0%
TACACCAATAATTCTGATGT+AGG - chr3.2:25246171-25246190 None:intergenic 30.0%
TAGCAAAACCCATTAACTAT+TGG + chr3.2:25241833-25241852 MS.gene63578:intron 30.0%
TAGTCCTACATCAGAATTAT+TGG + chr3.2:25246164-25246183 MS.gene63578:intron 30.0%
TCCATAAATTAATGGAGCTA+CGG - chr3.2:25246208-25246227 None:intergenic 30.0%
TCTCTTGATACTATAACTGA+GGG + chr3.2:25242528-25242547 MS.gene63578:CDS 30.0%
TGCACCTATTTATACATAGA+TGG + chr3.2:25245183-25245202 MS.gene63578:intron 30.0%
TGTATAAATATAGGGGAAAG+TGG + chr3.2:25244075-25244094 MS.gene63578:intron 30.0%
TGTTAGATTTCAACTAATGG+GGG + chr3.2:25245282-25245301 MS.gene63578:intron 30.0%
TGTTCATTCTCTTATCTCAA+CGG + chr3.2:25245715-25245734 MS.gene63578:intron 30.0%
TTCTTGCACCAATAGTTAAT+GGG - chr3.2:25241844-25241863 None:intergenic 30.0%
TTGAATAAGATATGGTCCAT+TGG + chr3.2:25246139-25246158 MS.gene63578:intron 30.0%
TTGCAGTATTGTGACAAATA+TGG + chr3.2:25246278-25246297 MS.gene63578:intron 30.0%
TTTCTTGCACCAATAGTTAA+TGG - chr3.2:25241845-25241864 None:intergenic 30.0%
! ACTTTTCTCCATTCTTGTAA+TGG - chr3.2:25246323-25246342 None:intergenic 30.0%
! ATGAGTGTACTACAGATTTT+AGG + chr3.2:25244922-25244941 MS.gene63578:intron 30.0%
! ATTAAGTGTGGTTTAAGGTT+AGG + chr3.2:25242685-25242704 MS.gene63578:intron 30.0%
! CATGTTTAGAACACTATGAA+AGG + chr3.2:25242924-25242943 MS.gene63578:intron 30.0%
! GTGACCAAATACTATTTCTT+TGG - chr3.2:25243798-25243817 None:intergenic 30.0%
! TAGGTACTTGGTAGATTTTA+AGG + chr3.2:25244809-25244828 MS.gene63578:intron 30.0%
! TCATATGTGTTAGCGTTTTA+TGG + chr3.2:25244689-25244708 MS.gene63578:intron 30.0%
! TCATGATATTGGAGATTTTG+AGG + chr3.2:25245080-25245099 MS.gene63578:CDS 30.0%
! TTGTCATGTCTAACTTTTCT+AGG + chr3.2:25245508-25245527 MS.gene63578:intron 30.0%
! TTTCCATTTTCTACCAAGAA+AGG + chr3.2:25241405-25241424 MS.gene63578:CDS 30.0%
! TTTTATAGGCATCCCTAAAA+AGG + chr3.2:25244430-25244449 MS.gene63578:CDS 30.0%
!! CTAGTTCTATTGCTATATCT+TGG - chr3.2:25242473-25242492 None:intergenic 30.0%
!! GAAAAAAGTATTGCCATCAT+GGG + chr3.2:25244996-25245015 MS.gene63578:CDS 30.0%
!! TCATCAATTGGTTGTTTTGT+AGG + chr3.2:25244294-25244313 MS.gene63578:intron 30.0%
!! TCTCCATCTCTTACTTTTAT+AGG + chr3.2:25244416-25244435 MS.gene63578:CDS 30.0%
!! TTTTTGGTCCCTATAAAACT+GGG + chr3.2:25242759-25242778 MS.gene63578:intron 30.0%
!!! GGTTTAAGCACTTTTTAAGT+CGG - chr3.2:25245809-25245828 None:intergenic 30.0%
!!! GTTTAAGCACTTTTTAAGTC+GGG - chr3.2:25245808-25245827 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - chr3.2:25243259-25243278 None:intergenic 30.0%
AAATACTTATTTGGGGAAGG+TGG + chr3.2:25245640-25245659 MS.gene63578:intron 35.0%
AGTGAAGTAAGGACTTTGAA+GGG - chr3.2:25246432-25246451 None:intergenic 35.0%
AGTTAACTCACGCTGAATTA+AGG + chr3.2:25245880-25245899 MS.gene63578:intron 35.0%
ATAAGTATTTCAACATGGCC+AGG - chr3.2:25241450-25241469 None:intergenic 35.0%
CAAAGAGAAGGATTGTGATA+AGG + chr3.2:25241599-25241618 MS.gene63578:CDS 35.0%
CCAAAATTGCCATCCATTAA+AGG + chr3.2:25241675-25241694 MS.gene63578:CDS 35.0%
CCATAAATTAATGGAGCTAC+GGG - chr3.2:25246207-25246226 None:intergenic 35.0%
CTACCTTTCTTGGTAGAAAA+TGG - chr3.2:25241411-25241430 None:intergenic 35.0%
CTAGAACAGAATCATGACAT+TGG + chr3.2:25241246-25241265 MS.gene63578:CDS 35.0%
CTATGGTTGATTGTGCTTAA+TGG - chr3.2:25245359-25245378 None:intergenic 35.0%
GACAAATATGGTGAGAATGT+AGG + chr3.2:25246290-25246309 MS.gene63578:CDS 35.0%
GACTCTATTGTGTATTGTAC+AGG + chr3.2:25243737-25243756 MS.gene63578:CDS 35.0%
GAGTTATAAAGGGGAAAAAG+TGG + chr3.2:25244137-25244156 MS.gene63578:intron 35.0%
GATTGTTAGAAGCAAAGAGA+AGG + chr3.2:25241587-25241606 MS.gene63578:CDS 35.0%
GCAAGAGAGATAAGAAAAGA+AGG + chr3.2:25241207-25241226 MS.gene63578:CDS 35.0%
GCATACATCTGATCTTGATT+TGG - chr3.2:25245993-25246012 None:intergenic 35.0%
GTAAATGACTCAGTTAATCC+GGG + chr3.2:25244236-25244255 MS.gene63578:intron 35.0%
GTAAGAGATGGAGAAAGTAA+AGG - chr3.2:25244410-25244429 None:intergenic 35.0%
GTCAAGAGCTCAATTAATTC+GGG - chr3.2:25244031-25244050 None:intergenic 35.0%
GTTATAGAAGATGACAGAGT+GGG + chr3.2:25244359-25244378 MS.gene63578:CDS 35.0%
TAAGTATTTCAACATGGCCA+GGG - chr3.2:25241449-25241468 None:intergenic 35.0%
TATGAGAAAATGTCGCACAT+CGG - chr3.2:25241927-25241946 None:intergenic 35.0%
TATGAGTATGAGTAGGTACT+TGG + chr3.2:25244797-25244816 MS.gene63578:intron 35.0%
TCGAAGAATGTGTGTGTAAT+CGG + chr3.2:25241159-25241178 MS.gene63578:CDS 35.0%
TTACACACACATTCTTCGAT+TGG - chr3.2:25241158-25241177 None:intergenic 35.0%
TTATAGAAGATGACAGAGTG+GGG + chr3.2:25244360-25244379 MS.gene63578:CDS 35.0%
TTATCAATACCTGTGGATGA+AGG - chr3.2:25242590-25242609 None:intergenic 35.0%
TTCTATAACCACCATTCCTT+TGG - chr3.2:25244348-25244367 None:intergenic 35.0%
TTCTCCATTCTTGTAATGGT+GGG - chr3.2:25246319-25246338 None:intergenic 35.0%
TTGGGTTAAGAGAGATGATA+AGG + chr3.2:25241496-25241515 MS.gene63578:CDS 35.0%
TTTCTCCATTCTTGTAATGG+TGG - chr3.2:25246320-25246339 None:intergenic 35.0%
! ACACTCCCTTTTCAAATTAG+TGG + chr3.2:25245255-25245274 MS.gene63578:intron 35.0%
! CACTCCCTTTTCAAATTAGT+GGG + chr3.2:25245256-25245275 MS.gene63578:intron 35.0%
! CTTGATGATTATGGTGTTTG+TGG + chr3.2:25241549-25241568 MS.gene63578:CDS 35.0%
! CTTTTGACAGCTTGATTTAC+TGG - chr3.2:25243840-25243859 None:intergenic 35.0%
! GGAAGGGTAATTTTCATAGA+TGG + chr3.2:25243698-25243717 MS.gene63578:CDS 35.0%
! GTTGGAATGCTTGATGATTA+TGG + chr3.2:25241540-25241559 MS.gene63578:CDS 35.0%
! TCTAATTACATTTTGCCACG+TGG - chr3.2:25242279-25242298 None:intergenic 35.0%
! TTTTCTTGACACCAAAGGAA+TGG + chr3.2:25244334-25244353 MS.gene63578:CDS 35.0%
!! ACAAAAGCTTTGGAAGCTTT+AGG + chr3.2:25242366-25242385 MS.gene63578:intron 35.0%
!! ATTCCTTTGGTGTCAAGAAA+AGG - chr3.2:25244335-25244354 None:intergenic 35.0%
!! CAAAAGCTTTGGAAGCTTTA+GGG + chr3.2:25242367-25242386 MS.gene63578:intron 35.0%
!! CCTTTAATGGATGGCAATTT+TGG - chr3.2:25241678-25241697 None:intergenic 35.0%
!! GGAAAAAAGTATTGCCATCA+TGG + chr3.2:25244995-25245014 MS.gene63578:CDS 35.0%
!! TACATCTGATCTTGATTTGG+CGG - chr3.2:25245990-25246009 None:intergenic 35.0%
!! TTCCTTTGGTGTCAAGAAAA+GGG - chr3.2:25244334-25244353 None:intergenic 35.0%
!!! CACACTAGCACTTTTAAGAT+TGG - chr3.2:25245830-25245849 None:intergenic 35.0%
!!! GTTTTTGGTCCCTATAAAAC+TGG + chr3.2:25242758-25242777 MS.gene63578:intron 35.0%
AACGGAAGTTAACTCACGTT+CGG + chr3.2:25245733-25245752 MS.gene63578:intron 40.0%
AATCTCCAAGAGAAGTCATG+GGG + chr3.2:25241373-25241392 MS.gene63578:CDS 40.0%
AATGCTCAGGAATGGATACA+TGG + chr3.2:25242031-25242050 MS.gene63578:intron 40.0%
AATTATTACTCGCTCCATCC+CGG - chr3.2:25244257-25244276 None:intergenic 40.0%
ACAATCTCCAAGAGAAGTCA+TGG + chr3.2:25241371-25241390 MS.gene63578:CDS 40.0%
AGAACTAGTGGGAATAGCAA+AGG + chr3.2:25242485-25242504 MS.gene63578:CDS 40.0%
AGAGCTCAATTAATTCGGGA+CGG - chr3.2:25244027-25244046 None:intergenic 40.0%
AGTCCTTACTTCACTCAACT+TGG + chr3.2:25246437-25246456 MS.gene63578:CDS 40.0%
ATAGAAGGTGAAGACCCTTT+AGG + chr3.2:25241297-25241316 MS.gene63578:CDS 40.0%
ATCATGACATTGGAGGACAA+TGG + chr3.2:25241256-25241275 MS.gene63578:CDS 40.0%
ATTGAGCTATCCACATTGCT+TGG - chr3.2:25244966-25244985 None:intergenic 40.0%
ATTGCTTGGGACTCAAAGAA+AGG - chr3.2:25244952-25244971 None:intergenic 40.0%
CAATCATGCACTTGTAGATC+TGG - chr3.2:25246122-25246141 None:intergenic 40.0%
CAATCTCCAAGAGAAGTCAT+GGG + chr3.2:25241372-25241391 MS.gene63578:CDS 40.0%
CCCGTAGCTCCATTAATTTA+TGG + chr3.2:25246204-25246223 MS.gene63578:intron 40.0%
GAACAGAATCATGACATTGG+AGG + chr3.2:25241249-25241268 MS.gene63578:CDS 40.0%
GAAGGATTGTGATAAGGTTG+TGG + chr3.2:25241605-25241624 MS.gene63578:CDS 40.0%
GAGTGAAGTAAGGACTTTGA+AGG - chr3.2:25246433-25246452 None:intergenic 40.0%
GGAAATGATGAAATCCATCG+AGG + chr3.2:25245020-25245039 MS.gene63578:CDS 40.0%
GGATAGCTCAATTGCTTTCT+GGG + chr3.2:25244974-25244993 MS.gene63578:CDS 40.0%
GGCATTCCTACTCATGATAT+TGG + chr3.2:25245069-25245088 MS.gene63578:CDS 40.0%
GGTTATAGAAGATGACAGAG+TGG + chr3.2:25244358-25244377 MS.gene63578:CDS 40.0%
GTATTATAGAGCAGGACTGT+CGG - chr3.2:25242325-25242344 None:intergenic 40.0%
GTCAAGAAAAGGGAAGCTAT+AGG - chr3.2:25244324-25244343 None:intergenic 40.0%
GTGGTTGGAAATTCCTATAG+TGG + chr3.2:25242447-25242466 MS.gene63578:CDS 40.0%
TAAATTAATGGAGCTACGGG+TGG - chr3.2:25246204-25246223 None:intergenic 40.0%
TACCATGAAAGAGAAGTAGC+AGG + chr3.2:25245048-25245067 MS.gene63578:CDS 40.0%
TATATAACAGGTTGTGGTGG+TGG + chr3.2:25242428-25242447 MS.gene63578:intron 40.0%
TGCTATATCTTGGCCACTAT+AGG - chr3.2:25242463-25242482 None:intergenic 40.0%
TGGATAGCTCAATTGCTTTC+TGG + chr3.2:25244973-25244992 MS.gene63578:CDS 40.0%
TTATCTCTCTTGCTGCTACT+AGG - chr3.2:25241200-25241219 None:intergenic 40.0%
TTCATCATTTCCTCCCATGA+TGG - chr3.2:25245012-25245031 None:intergenic 40.0%
TTGAGCTATCCACATTGCTT+GGG - chr3.2:25244965-25244984 None:intergenic 40.0%
TTGCTTGGGACTCAAAGAAA+GGG - chr3.2:25244951-25244970 None:intergenic 40.0%
TTGTGATAAGGTTGTGGAAG+AGG + chr3.2:25241611-25241630 MS.gene63578:CDS 40.0%
! AGTCCAAGTTGAGTGAAGTA+AGG - chr3.2:25246443-25246462 None:intergenic 40.0%
! TGGAAAGTGTGCTCATACAA+AGG - chr3.2:25244386-25244405 None:intergenic 40.0%
! TTCCCTTTTCTTGACACCAA+AGG + chr3.2:25244329-25244348 MS.gene63578:CDS 40.0%
!! AAAAGTATTGCCATCATGGG+AGG + chr3.2:25244999-25245018 MS.gene63578:CDS 40.0%
!! ATTCTTCGATTGGTTCGTCT+CGG - chr3.2:25241148-25241167 None:intergenic 40.0%
AATGTGTGTGTAATCGGTGC+TGG + chr3.2:25241165-25241184 MS.gene63578:CDS 45.0%
ACCTCATTGTGGAATGGTTC+TGG - chr3.2:25242093-25242112 None:intergenic 45.0%
AGAAAGGTAGAGACATGAGG+AGG + chr3.2:25241421-25241440 MS.gene63578:CDS 45.0%
ATGACTCAGTTAATCCGGGA+TGG + chr3.2:25244240-25244259 MS.gene63578:intron 45.0%
CCAAGAAAGGTAGAGACATG+AGG + chr3.2:25241418-25241437 MS.gene63578:CDS 45.0%
CCTCATGTCTCTACCTTTCT+TGG - chr3.2:25241421-25241440 None:intergenic 45.0%
CTGATGTAGGACTAGACCAA+TGG - chr3.2:25246158-25246177 None:intergenic 45.0%
GACTCCCACCATTACAAGAA+TGG + chr3.2:25246312-25246331 MS.gene63578:CDS 45.0%
GAGATGGAGAAAGTAAAGGG+TGG - chr3.2:25244406-25244425 None:intergenic 45.0%
GGAGACATATCGAGACTCAT+GGG + chr3.2:25246382-25246401 MS.gene63578:CDS 45.0%
TACCCTTCCATCCTCTTCAA+GGG - chr3.2:25243687-25243706 None:intergenic 45.0%
TCCAGAACCATTCCACAATG+AGG + chr3.2:25242089-25242108 MS.gene63578:CDS 45.0%
TCTTGACACCAAAGGAATGG+TGG + chr3.2:25244337-25244356 MS.gene63578:CDS 45.0%
TCTTTGAGTCCCAAGCAATG+TGG + chr3.2:25244953-25244972 MS.gene63578:CDS 45.0%
TGGAGACATATCGAGACTCA+TGG + chr3.2:25246381-25246400 MS.gene63578:CDS 45.0%
TTACCCTTCCATCCTCTTCA+AGG - chr3.2:25243688-25243707 None:intergenic 45.0%
TTCATGGTAGAACTCCTCGA+TGG - chr3.2:25245037-25245056 None:intergenic 45.0%
! AGACTCATGGGATGATGATG+AGG + chr3.2:25246394-25246413 MS.gene63578:CDS 45.0%
! GGAAGAGGTTTTTGATGCAG+TGG + chr3.2:25241626-25241645 MS.gene63578:CDS 45.0%
! GGAAGGGCATACAAAAGCTT+TGG + chr3.2:25242356-25242375 MS.gene63578:intron 45.0%
! TACCTGTGGATGAAGGTGTA+AGG - chr3.2:25242583-25242602 None:intergenic 45.0%
! TGCCTGCTACTTCTCTTTCA+TGG - chr3.2:25245053-25245072 None:intergenic 45.0%
!! TTAATTAATAAATATTAGTA+GGG - chr3.2:25243290-25243309 None:intergenic 5.0%
!! TTTAATTAATAAATATTAGT+AGG - chr3.2:25243291-25243310 None:intergenic 5.0%
!!! ATTTTTTTTATTTATATAAC+AGG + chr3.2:25242416-25242435 MS.gene63578:intron 5.0%
!!! ATTTTTTTTCTTTTTTTTAT+TGG + chr3.2:25243508-25243527 MS.gene63578:intron 5.0%
ATAGACGCCCTTGAAGAGGA+TGG + chr3.2:25243677-25243696 MS.gene63578:CDS 50.0%
GACCTTACACCTTCATCCAC+AGG + chr3.2:25242578-25242597 MS.gene63578:CDS 50.0%
GTGAACCCCATGACTTCTCT+TGG - chr3.2:25241381-25241400 None:intergenic 50.0%
TGGTTGAGCGTAATGACCAG+TGG - chr3.2:25241658-25241677 None:intergenic 50.0%
TGTCCAGTGATTTCGCTGTG+CGG + chr3.2:25243931-25243950 MS.gene63578:intron 50.0%
! AAGGACTTTGAAGGGCCTCT+TGG - chr3.2:25246424-25246443 None:intergenic 50.0%
! TGATGATGAGGTGCTCCAAG+AGG + chr3.2:25246406-25246425 MS.gene63578:CDS 50.0%
!! TAACAGGTTGTGGTGGTGGT+TGG + chr3.2:25242432-25242451 MS.gene63578:intron 50.0%
ACGCCCTTGAAGAGGATGGA+AGG + chr3.2:25243681-25243700 MS.gene63578:CDS 55.0%
AGAGACATGAGGAGGTTCCC+TGG + chr3.2:25241429-25241448 MS.gene63578:CDS 55.0%
AGTCCGCACAGCGAAATCAC+TGG - chr3.2:25243937-25243956 None:intergenic 55.0%
CGCCCTTGAAGAGGATGGAA+GGG + chr3.2:25243682-25243701 MS.gene63578:CDS 55.0%
GATGCAGTGGTTGTTGCCAC+TGG + chr3.2:25241639-25241658 MS.gene63578:CDS 55.0%
GCAGATAGACGCCCTTGAAG+AGG + chr3.2:25243673-25243692 MS.gene63578:intron 55.0%
AGCTAGCGACGCGTTACCTC+TGG - chr3.2:25241812-25241831 None:intergenic 60.0%
CTTGCTGCTACTAGGCCTGC+TGG - chr3.2:25241192-25241211 None:intergenic 60.0%
!! GTAATCGGTGCTGGACCAGC+AGG + chr3.2:25241174-25241193 MS.gene63578:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 25241138 25246472 25241138 ID=MS.gene63578
chr3.2 mRNA 25241138 25246472 25241138 ID=MS.gene63578.t1;Parent=MS.gene63578
chr3.2 exon 25241138 25241696 25241138 ID=MS.gene63578.t1.exon1;Parent=MS.gene63578.t1
chr3.2 CDS 25241138 25241696 25241138 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
chr3.2 exon 25242040 25242110 25242040 ID=MS.gene63578.t1.exon2;Parent=MS.gene63578.t1
chr3.2 CDS 25242040 25242110 25242040 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
chr3.2 exon 25242438 25242599 25242438 ID=MS.gene63578.t1.exon3;Parent=MS.gene63578.t1
chr3.2 CDS 25242438 25242599 25242438 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
chr3.2 exon 25243677 25243759 25243677 ID=MS.gene63578.t1.exon4;Parent=MS.gene63578.t1
chr3.2 CDS 25243677 25243759 25243677 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
chr3.2 exon 25244316 25244451 25244316 ID=MS.gene63578.t1.exon5;Parent=MS.gene63578.t1
chr3.2 CDS 25244316 25244451 25244316 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
chr3.2 exon 25244937 25245101 25244937 ID=MS.gene63578.t1.exon6;Parent=MS.gene63578.t1
chr3.2 CDS 25244937 25245101 25244937 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
chr3.2 exon 25246284 25246472 25246284 ID=MS.gene63578.t1.exon7;Parent=MS.gene63578.t1
chr3.2 CDS 25246284 25246472 25246284 ID=cds.MS.gene63578.t1;Parent=MS.gene63578.t1
Gene Sequence

>MS.gene63578

ATGGTTTCCGAGACGAACCAATCGAAGAATGTGTGTGTAATCGGTGCTGGACCAGCAGGCCTAGTAGCAGCAAGAGAGATAAGAAAAGAAGGTCACAAAGTAATTGTGCTAGAACAGAATCATGACATTGGAGGACAATGGTTATATGATGATAAAAATATAGAAGGTGAAGACCCTTTAGGTAGAAACTCTTTTCTAAAAGTTCATAGCAGTATCTATAACTCTTTAAGAACACAATCTCCAAGAGAAGTCATGGGGTTCACAGATTTTCCATTTTCTACCAAGAAAGGTAGAGACATGAGGAGGTTCCCTGGCCATGTTGAAATACTTATGTATCTAAAAGATTTTTGTGAATGGTTTGGGTTAAGAGAGATGATAAGGTTCAATACTAGGGTTAATTATGTTGGAATGCTTGATGATTATGGTGTTTGTGGAAATAATTTGAAGTGGATTGTTAGAAGCAAAGAGAAGGATTGTGATAAGGTTGTGGAAGAGGTTTTTGATGCAGTGGTTGTTGCCACTGGTCATTACGCTCAACCAAAATTGCCATCCATTAAAGGTAACATGATTTTCTATACTAATATCTTGAATTTCTCATCCATTTATTTCATGTTAGAGATATGAATATGATATAAAGAAACAGGAAGAAAGGAATTTTATAATGTAATACTCCAGAGGTAACGCGTCGCTAGCTATAGCAAAACCCATTAACTATTGGTGCAAGAAATATAACATACAAGACTTTTATTTATATGGCCAAGTCTTTGTATATTTTTTTCATATTATCCGATGTGCGACATTTTCTCATAATAAGTAAAGGGAATTACATTCTCATTATTATTATTGATATATGATTATGTAGATAATTATATATTGATGCATAATTATATATTAATGCTCAGGAATGGATACATGGAAAAGAAAACAAATGCATAGTCACATTTACAGGACTCCAGAACCATTCCACAATGAGGTATATTTGCTATGTAATCTCTTATGTTTTTTCTTTGATAAATCAAAGATAATATATATTATTTAATTGATATGCACTATGAAAAAAGAAAATTACACATGCAACCATATATCACAATTATATCTCTTTGTTAATATTAGCTCAGAAAATATCTCTATAAATTATCCACGTGGCAAAATGTAATTAGAAACTATGTAAATTTATTTTTACACCGACAGTCCTGCTCTATAATACATGTAAATAATGGAAGGGCATACAAAAGCTTTGGAAGCTTTAGGGACACTCAAACTTATTTAAGCTGATTAATTTTTTTTATTTATATAACAGGTTGTGGTGGTGGTTGGAAATTCCTATAGTGGCCAAGATATAGCAATAGAACTAGTGGGAATAGCAAAGGAAGTTCATATAAGTTCAAGATCTCTTGATACTATAACTGAGGGATTTTCTAAAGTCATATCAAAACATGAGACCTTACACCTTCATCCACAGGTATTGATAATTATAATCTCAAATTAAAGAAAAAAGATATTTCACTACTATTTTCGTTAGATTTATACTCACTCTGTCTCATTATATTAAGTGTGGTTTAAGGTTAGGCATGCAAAGTTTTGAAAAAATTATAGAGTATACTAATATGGGTTAAATATGTTTTTGGTCCCTATAAAACTGGGAACTTTTAACTTTAGTCCTTACTTAATTTTCATAGGTTTTTTAGTCCCTACAAAAAAAATTACTTCTAATTTTAGTCCTTGTTACAACAAAGTTTGTTTAATTATCCCTAAACTCTTAAATTTTTGAACAATTTTTTTGAGACATGTTTAGAACACTATGAAAGGTTCATTTACTAAAATTTAGAATTTTTTTAACATGAAACGAATTAAATATGAATTTTTTAAAACAACAAAAGTTAAATATAAAATTAACAAAATCTGGACGTAGAAATCAAATTTTATGACAATTTTTTGCAGAGGAGCTTTTAGTAATGTTCTTAGCACGTCTTCAAAAAATTGTTCAAAAACTCAAGAGTTTAAGCATAAATTAAACAAATTTGAATTGAGGAGGGACTAATACTGAGTGCAGAAGAAAAAAAAACTTAAGGGCTAAAAGAACTATTAAAATTAGGTAAGGACTAAACTTAAAAGGTCCCAATTTTATAGGGACCAAAAACATATTTAACCCTACTAATATTTATTAATTAAATAAGTTTCATTGATTAAAAGACTTTTATTAAATAAAGTAGTTGGGTTGATTGAGATAAATAATGCATAAGGATATTACTAGAAAAAAATGTAATTAGCTTTATTTGTTAACAGTGTATCACTTCAATAGTAAGAGTTTGTCATCATAATTAGAGGAATGATATTTGAATAATAATTTGGGACAATCTTTATGACAATATTTTTTTTCTTTTTTTTATTGGTCAAAAACAATAGAAAGATAATAAGAACATTATATGAGTATTTGAAAGGAAGTTGTCAAAAAATTATCACAAAATAATTTTACAAATATCATCTCTCTTTAACAGGGGACTTATATAGTAACGTGTTATATTGGATCATTGTGCAGATAGACGCCCTTGAAGAGGATGGAAGGGTAATTTTCATAGATGGTTCTTGCGTTAAAGCAGACTCTATTGTGTATTGTACAGGGTAAGTCATAGAGAAATTCTAATATGGTCACAGGACCAAAGAAATAGTATTTGGTCACACAAAAAAAAAGGAGTATACCAGTAAATCAAGCTGTCAAAAGAAAAGATTGATTAAAAAAAATTATTTTCTATCACAAACAGTACATTATGATTGAATAATAATTATGATCTTTGTCCAGTGATTTCGCTGTGCGGACTAATCAATATGTCGAAACATGTTTAAATATTTCCTTTTAGAGTAAAGTAGTTATGTATACTAGTTCTTCCGTCCCGAATTAATTGAGCTCTTGACTCATTTCACACTTATTAAGAAAAATGTATAAATATAGGGGAAAGTGGAATATATTGAATTGAGAATGATGAAAGTATTATTAATTAGAGTTATAAAGGGGAAAAAGTGGAATATATTGAATTGGGAATGATGAAAGTAGTATTGAAAATTGAAATGACTCGGTTATTTTAAGACACTTTTTTTTAGTAAATGACTCAGTTAATCCGGGATGGAGCGAGTAATAATTAAAGGTGTTTTTGAAATTCATCAATTGGTTGTTTTGTAGGTACTCCTATAGCTTCCCTTTTCTTGACACCAAAGGAATGGTGGTTATAGAAGATGACAGAGTGGGGCCTTTGTATGAGCACACTTTCCACCCTTTACTTTCTCCATCTCTTACTTTTATAGGCATCCCTAAAAAGGTAATTAACCTAAAATCAGCAATTGAAAAATTAGTTATAAGGTATATAACATCAACACTTCATACCGAATATATAAATGGCTTCTGACACATTTTGATTATGCAGCATTGACACTTCTAATTAAAAATATGGGTTTTGTTTGACATGCACGTGACACTTGTATATGTGATTGATATATGTGATTGTATTCTGTTAATTCTTTTTCTCAAATAGACGTGTCAGTGTCGTGTTTAGTATTCATATGTGTTAGCGTTTTATGGTGCGTCGATGTCTAACACTAACACTTGTAGTTACATTTAATTACTTTATTTTTTTAAATTATTATCAGTATATATCATGTTTGTATATGAGTATGAGTAGGTACTTGGTAGATTTTAAGGTCACATTTATTTTTTTATCTCTTATGCATACTTTTTAGTTTCAATGGTGATACCAAAAGTATGTATATCAAATGTTGAATTCTTTAATTGATGAGTGTACTACAGATTTTAGGATTCCCTTTCTTTGAGTCCCAAGCAATGTGGATAGCTCAATTGCTTTCTGGGAAAAAAGTATTGCCATCATGGGAGGAAATGATGAAATCCATCGAGGAGTTCTACCATGAAAGAGAAGTAGCAGGCATTCCTACTCATGATATTGGAGATTTTGAGGTAAAAAAAAAAAATAAACAAAATCTTGGTTTTTTTATTTTTAACAAAACAATATCTTGGTAGCCATTAAATTTTATAATATGCACCTATTTATACATAGATGGCTTCATCACATAATTTGAAGAGACAAAATTGCTAGCAATTTGCTTTTTAACACTCCCTTTTCAAATTAGTGGGATTTGTTAGATTTCAACTAATGGGGGCTCATGCAATATTTTTTATTCTATATAAACAATTCATGCAATATCACATGTCCATTAAGCACAATCAACCATAGAAAAATATATTTTCTTAATTATAACAATGACAAAAAAAAAAGATATCAAAGATCATAGAAAAAGAACCTTTTATCAAAATAGTAAAAAATTCTTAAAATGTCATAAGGGTGACCATTAATAGTTTTTTATTGTCATGTCTAACTTTTCTAGGCTGATTGCTTCACGCAATCCCCTCGATTTGTTTTGAATCTTTTATTTTTTTTACTAAAAGATCTGTTTTGAATCTAATTTATAGAAGTTGAAATTCAATCTTCATCTAAAAATACTTATTTGGGGAAGGTGGTAAATATCTGAGTTATTTTTTATTTGAAAATTGCTCTTATCCCTTTTAAAATTGTTCATTCTCTTATCTCAACGGAAGTTAACTCACGTTCGGCATTATTCAATATGAGTTAACTCACGCTAACACTTTTAAGATATGTTGACCCGACTTAAAAAGTGCTTAAACCAATCTTAAAAGTGCTAGTGTGAGTTAACTCATGTTGAAAATATCGAGCGTGAGTTAACTCACGCTGAATTAAGGATATAAACATTTTCAAAATATAATATCATACGAAAATGGTATTATTTGGGTTTAGATCTACATATTAAGATCATCTGATTTAAACCGCCAAATCAAGATCAGATGTATGCATTCAAACTTTTTTTTTTTTTTTTGGTACAATATGCATTCAAACTTTAATAAATCAAGTTCAAAATTTAATGTCAAATAAAAATTATCTGATTGTAATATGAGGATCCAGATCTACAAGTGCATGATTGAATAAGATATGGTCCATTGGTCTAGTCCTACATCAGAATTATTGGTGTACACTGTACAGCCACCCGTAGCTCCATTAATTTATGGAAAAATGAAAAGGTGAAAATTTGTATGTGTTTTAATTTTTATTTTGTTACATTGCAGTATTGTGACAAATATGGTGAGAATGTAGGACTCCCACCATTACAAGAATGGAGAAAAGTGCTTTGTGTTTCAGCCATAATTAACTCCATTGTTAACTTGGAGACATATCGAGACTCATGGGATGATGATGAGGTGCTCCAAGAGGCCCTTCAAAGTCCTTACTTCACTCAACTTGGACTTGAAGATTGA
Protein sequence

>MS.gene63578.t1

MVSETNQSKNVCVIGAGPAGLVAAREIRKEGHKVIVLEQNHDIGGQWLYDDKNIEGEDPLGRNSFLKVHSSIYNSLRTQSPREVMGFTDFPFSTKKGRDMRRFPGHVEILMYLKDFCEWFGLREMIRFNTRVNYVGMLDDYGVCGNNLKWIVRSKEKDCDKVVEEVFDAVVVATGHYAQPKLPSIKGMDTWKRKQMHSHIYRTPEPFHNEVVVVVGNSYSGQDIAIELVGIAKEVHISSRSLDTITEGFSKVISKHETLHLHPQIDALEEDGRVIFIDGSCVKADSIVYCTGYSYSFPFLDTKGMVVIEDDRVGPLYEHTFHPLLSPSLTFIGIPKKILGFPFFESQAMWIAQLLSGKKVLPSWEEMMKSIEEFYHEREVAGIPTHDIGDFEYCDKYGENVGLPPLQEWRKVLCVSAIINSIVNLETYRDSWDDDEVLQEALQSPYFTQLGLED