Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025792.t1 | AES94229.2 | 96.9 | 451 | 14 | 0 | 1 | 451 | 1 | 451 | 3.40E-262 | 913.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025792.t1 | Q94BV5 | 62.3 | 454 | 160 | 5 | 2 | 449 | 3 | 451 | 4.2e-168 | 592.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025792.t1 | G7JVZ6 | 96.9 | 451 | 14 | 0 | 1 | 451 | 1 | 451 | 2.5e-262 | 913.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76883 | MS.gene025792 | PPI |
| MS.gene21150 | MS.gene025792 | PPI |
| MS.gene025792 | MS.gene09953 | PPI |
| MS.gene89575 | MS.gene025792 | PPI |
| MS.gene63578 | MS.gene025792 | PPI |
| MS.gene038078 | MS.gene025792 | PPI |
| MS.gene99127 | MS.gene025792 | PPI |
| MS.gene09953 | MS.gene025792 | PPI |
| MS.gene23970 | MS.gene025792 | PPI |
| MS.gene015453 | MS.gene025792 | PPI |
| MS.gene036055 | MS.gene025792 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025792.t1 | MTR_5g012130 | 96.896 | 451 | 14 | 0 | 1 | 451 | 1 | 451 | 0.0 | 910 |
| MS.gene025792.t1 | MTR_5g012130 | 97.568 | 329 | 8 | 0 | 1 | 329 | 21 | 349 | 0.0 | 666 |
| MS.gene025792.t1 | MTR_5g012130 | 96.538 | 260 | 9 | 0 | 1 | 260 | 21 | 280 | 0.0 | 520 |
| MS.gene025792.t1 | MTR_8g037880 | 53.440 | 436 | 187 | 5 | 13 | 442 | 4 | 429 | 2.00e-164 | 470 |
| MS.gene025792.t1 | MTR_8g037910 | 53.302 | 424 | 190 | 4 | 13 | 436 | 4 | 419 | 4.93e-161 | 462 |
| MS.gene025792.t1 | MTR_3g437580 | 47.912 | 455 | 212 | 9 | 1 | 442 | 1 | 443 | 1.09e-147 | 429 |
| MS.gene025792.t1 | MTR_8g037910 | 56.604 | 318 | 134 | 3 | 13 | 330 | 4 | 317 | 4.33e-126 | 369 |
| MS.gene025792.t1 | MTR_3g437580 | 50.729 | 343 | 153 | 7 | 1 | 330 | 1 | 340 | 1.41e-116 | 346 |
| MS.gene025792.t1 | MTR_8g037910 | 53.480 | 273 | 123 | 3 | 13 | 285 | 4 | 272 | 6.67e-97 | 292 |
| MS.gene025792.t1 | MTR_2g450510 | 23.622 | 254 | 134 | 9 | 11 | 231 | 3 | 229 | 7.63e-13 | 70.9 |
| MS.gene025792.t1 | MTR_7g107690 | 26.087 | 230 | 132 | 7 | 13 | 236 | 8 | 205 | 1.46e-12 | 69.3 |
| MS.gene025792.t1 | MTR_7g107710 | 23.132 | 281 | 179 | 6 | 13 | 291 | 6 | 251 | 1.47e-12 | 69.3 |
| MS.gene025792.t1 | MTR_7g099330 | 24.034 | 233 | 135 | 6 | 14 | 237 | 25 | 224 | 2.37e-12 | 68.9 |
| MS.gene025792.t1 | MTR_2g450310 | 23.438 | 256 | 132 | 9 | 11 | 231 | 3 | 229 | 2.61e-12 | 68.9 |
| MS.gene025792.t1 | MTR_1g069275 | 24.554 | 224 | 138 | 6 | 15 | 236 | 27 | 221 | 5.16e-12 | 67.8 |
| MS.gene025792.t1 | MTR_3g109520 | 24.898 | 245 | 150 | 7 | 15 | 253 | 41 | 257 | 1.16e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025792.t1 | AT1G62620 | 61.726 | 452 | 162 | 5 | 6 | 450 | 3 | 450 | 0.0 | 583 |
| MS.gene025792.t1 | AT1G63370 | 61.504 | 452 | 163 | 5 | 6 | 450 | 3 | 450 | 0.0 | 582 |
| MS.gene025792.t1 | AT1G62600 | 62.555 | 454 | 159 | 6 | 2 | 449 | 3 | 451 | 0.0 | 572 |
| MS.gene025792.t1 | AT1G12200 | 60.526 | 456 | 169 | 6 | 1 | 449 | 1 | 452 | 0.0 | 547 |
| MS.gene025792.t1 | AT1G62560 | 55.408 | 453 | 196 | 3 | 1 | 451 | 1 | 449 | 0.0 | 529 |
| MS.gene025792.t1 | AT1G12140 | 58.499 | 453 | 181 | 3 | 1 | 451 | 1 | 448 | 0.0 | 528 |
| MS.gene025792.t1 | AT1G12140 | 58.499 | 453 | 181 | 3 | 1 | 451 | 1 | 448 | 0.0 | 528 |
| MS.gene025792.t1 | AT1G62580 | 60.177 | 452 | 173 | 6 | 1 | 449 | 2 | 449 | 0.0 | 526 |
| MS.gene025792.t1 | AT1G62620 | 64.767 | 386 | 129 | 4 | 6 | 384 | 3 | 388 | 0.0 | 523 |
| MS.gene025792.t1 | AT1G12140 | 58.057 | 453 | 181 | 4 | 1 | 451 | 1 | 446 | 0.0 | 518 |
| MS.gene025792.t1 | AT1G65860 | 55.088 | 452 | 195 | 5 | 2 | 451 | 3 | 448 | 0.0 | 516 |
| MS.gene025792.t1 | AT1G62600 | 65.039 | 389 | 129 | 5 | 2 | 384 | 3 | 390 | 9.01e-179 | 505 |
| MS.gene025792.t1 | AT1G62540 | 56.291 | 453 | 191 | 4 | 1 | 451 | 1 | 448 | 2.78e-178 | 506 |
| MS.gene025792.t1 | AT1G12160 | 53.289 | 456 | 193 | 4 | 11 | 450 | 10 | 461 | 4.34e-177 | 504 |
| MS.gene025792.t1 | AT1G62580 | 56.082 | 485 | 173 | 8 | 1 | 449 | 2 | 482 | 6.83e-177 | 504 |
| MS.gene025792.t1 | AT1G62570 | 56.416 | 452 | 189 | 5 | 2 | 451 | 3 | 448 | 1.23e-175 | 500 |
| MS.gene025792.t1 | AT1G62540 | 53.556 | 478 | 190 | 5 | 1 | 451 | 1 | 473 | 5.83e-174 | 496 |
| MS.gene025792.t1 | AT1G62560 | 59.067 | 386 | 156 | 2 | 1 | 384 | 1 | 386 | 3.34e-170 | 484 |
| MS.gene025792.t1 | AT1G12130 | 53.219 | 466 | 185 | 8 | 8 | 450 | 8 | 463 | 3.28e-166 | 476 |
| MS.gene025792.t1 | AT1G62540 | 53.422 | 453 | 186 | 6 | 1 | 451 | 1 | 430 | 6.90e-164 | 469 |
| MS.gene025792.t1 | AT1G63340 | 53.982 | 452 | 161 | 5 | 1 | 449 | 2 | 409 | 2.54e-162 | 465 |
| MS.gene025792.t1 | AT1G63370 | 63.664 | 333 | 114 | 4 | 6 | 331 | 3 | 335 | 3.23e-155 | 443 |
| MS.gene025792.t1 | AT5G61290 | 48.758 | 443 | 207 | 8 | 11 | 442 | 14 | 447 | 9.00e-150 | 434 |
| MS.gene025792.t1 | AT5G07800 | 47.137 | 454 | 218 | 10 | 11 | 450 | 14 | 459 | 3.35e-145 | 422 |
| MS.gene025792.t1 | AT1G12200 | 64.095 | 337 | 113 | 5 | 1 | 330 | 1 | 336 | 6.06e-144 | 416 |
| MS.gene025792.t1 | AT1G62580 | 61.628 | 344 | 116 | 5 | 1 | 329 | 2 | 344 | 3.40e-133 | 388 |
| MS.gene025792.t1 | AT1G63390 | 58.125 | 160 | 61 | 4 | 2 | 156 | 3 | 161 | 3.60e-48 | 163 |
| MS.gene025792.t1 | AT5G45180 | 23.810 | 441 | 214 | 18 | 9 | 359 | 9 | 417 | 3.37e-15 | 77.8 |
| MS.gene025792.t1 | AT1G19250 | 28.340 | 247 | 121 | 10 | 8 | 224 | 8 | 228 | 6.13e-14 | 74.3 |
| MS.gene025792.t1 | AT5G11320 | 23.214 | 224 | 136 | 5 | 15 | 236 | 19 | 208 | 3.12e-12 | 68.2 |
| MS.gene025792.t1 | AT5G11320 | 23.214 | 224 | 136 | 5 | 15 | 236 | 19 | 208 | 4.77e-12 | 67.8 |
| MS.gene025792.t1 | AT4G28720 | 24.473 | 237 | 137 | 7 | 14 | 237 | 26 | 233 | 4.96e-11 | 64.7 |
Find 144 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTGGGGTGGGTGAAGG+TGG | 0.205048 | 5.3:-5364603 | MS.gene025792:CDS |
| CAATTTGCCTCGGGAGAGTA+TGG | 0.242875 | 5.3:-5364775 | MS.gene025792:CDS |
| TAAGAGGCACACTCATAATA+TGG | 0.255894 | 5.3:-5362374 | MS.gene025792:CDS |
| AAGAAAATAACCAGGAATAT+TGG | 0.264046 | 5.3:+5364479 | None:intergenic |
| CTCCATGGCTTTCCTTTGTT+GGG | 0.291150 | 5.3:-5362549 | MS.gene025792:CDS |
| AAGACAGAGGTGGTGTTTGC+TGG | 0.296073 | 5.3:-5364618 | MS.gene025792:CDS |
| ATATTATGAGTGTGCCTCTT+AGG | 0.298315 | 5.3:+5362376 | None:intergenic |
| TAACATGTGGCTTCATTCTA+TGG | 0.307413 | 5.3:-5363159 | MS.gene025792:intron |
| TGCAGTGGGACTACAATAAC+TGG | 0.310122 | 5.3:-5362058 | MS.gene025792:intron |
| GTGTTTGCTGGGGTGGGTGA+AGG | 0.313072 | 5.3:-5364606 | MS.gene025792:CDS |
| CACGGGCTCGGCCAATGTTC+AGG | 0.313423 | 5.3:-5362350 | MS.gene025792:intron |
| CATACTCTCCCGAGGCAAAT+TGG | 0.320024 | 5.3:+5364776 | None:intergenic |
| GCTCGGGTGTTCTGTAATTA+TGG | 0.325418 | 5.3:+5363628 | None:intergenic |
| AGAAAATAACCAGGAATATT+GGG | 0.332604 | 5.3:+5364480 | None:intergenic |
| GCTCCATGGCTTTCCTTTGT+TGG | 0.336615 | 5.3:-5362550 | MS.gene025792:CDS |
| GGGTAGGTTGTAGTTCTAAT+AGG | 0.346493 | 5.3:-5363296 | MS.gene025792:intron |
| CCGAGACTTCCCAATATTCC+TGG | 0.353788 | 5.3:-5364489 | MS.gene025792:intron |
| AGTGGATAAGCTTCCGGTTC+GGG | 0.354622 | 5.3:+5364823 | None:intergenic |
| GGGTGGGTGAAGGTGGGAAA+TGG | 0.367744 | 5.3:-5364596 | MS.gene025792:CDS |
| GCCGATGACTGCCACGTGGC+GGG | 0.373968 | 5.3:+5364983 | None:intergenic |
| TGGCTATGCATTTGCTTCCC+TGG | 0.375441 | 5.3:+5363648 | None:intergenic |
| AGAGGTGGTGTTTGCTGGGG+TGG | 0.381682 | 5.3:-5364613 | MS.gene025792:CDS |
| CTTTGTTGGGTTACCTTGGA+AGG | 0.382913 | 5.3:-5362536 | MS.gene025792:CDS |
| ATGGAGAACGCAAATGTATA+TGG | 0.387354 | 5.3:-5362000 | MS.gene025792:CDS |
| TGCTACTAAGCCTCCGGCGC+CGG | 0.388838 | 5.3:+5364959 | None:intergenic |
| TGGTTCGGAGTGAATTGTAT+AGG | 0.394896 | 5.3:+5364796 | None:intergenic |
| TACTTGTCACTTGAAGAATC+TGG | 0.396469 | 5.3:-5362403 | MS.gene025792:CDS |
| TACTTGATCTTGAAAGGGCT+CGG | 0.401139 | 5.3:+5363611 | None:intergenic |
| AGAAAGGGAGAGATTGTAGA+AGG | 0.404469 | 5.3:-5364719 | MS.gene025792:CDS |
| CACTCGGTTTGGACCCGAAC+CGG | 0.410482 | 5.3:-5364836 | MS.gene025792:CDS |
| CTTCGAGCGAGGAGAAGAAT+TGG | 0.410605 | 5.3:-5364898 | MS.gene025792:CDS |
| GGCTCGAGTGGATAAGCTTC+CGG | 0.414887 | 5.3:+5364817 | None:intergenic |
| GAGGTGGTGTTTGCTGGGGT+GGG | 0.423874 | 5.3:-5364612 | MS.gene025792:CDS |
| CTGCAGAGCAAGTGGATAGC+TGG | 0.424635 | 5.3:-5362490 | MS.gene025792:CDS |
| GAGTGGATAAGCTTCCGGTT+CGG | 0.425312 | 5.3:+5364822 | None:intergenic |
| AGTGGGTCGGATTCTATCTC+TGG | 0.428807 | 5.3:+5364855 | None:intergenic |
| GCAGTCATCGGCGCCGGCGC+CGG | 0.432692 | 5.3:-5364972 | MS.gene025792:CDS |
| GAGAAGAATTGGGCGGTTCA+TGG | 0.435788 | 5.3:-5364887 | MS.gene025792:CDS |
| TTCTTCTAAAAGGGTAATCT+CGG | 0.436563 | 5.3:+5364748 | None:intergenic |
| TCACCACACCATTGGTTTCA+AGG | 0.437617 | 5.3:+5362629 | None:intergenic |
| AGAATCCGACCCACTCGGTT+TGG | 0.439148 | 5.3:-5364847 | MS.gene025792:CDS |
| CACGTGGCAGTCATCGGCGC+CGG | 0.444457 | 5.3:-5364978 | MS.gene025792:CDS |
| ATCACTTACTTGATCTTGAA+AGG | 0.452689 | 5.3:+5363605 | None:intergenic |
| TTTAGAAGAAAAGAAGAGAA+AGG | 0.454059 | 5.3:-5364735 | MS.gene025792:CDS |
| TTGCTGGGGTGGGTGAAGGT+GGG | 0.455177 | 5.3:-5364602 | MS.gene025792:CDS |
| TTCCACCGGCGTTAGCTCCA+TGG | 0.457976 | 5.3:-5362564 | MS.gene025792:CDS |
| TGTGAGAAGTGGTGTTGCGG+TGG | 0.462747 | 5.3:+5365007 | None:intergenic |
| TCAGGCATTAATGCATGGCC+AGG | 0.465216 | 5.3:-5363666 | MS.gene025792:intron |
| TTTCCTTTGTTGGGTTACCT+TGG | 0.473219 | 5.3:-5362540 | MS.gene025792:CDS |
| TTAGAAGAAAAGAAGAGAAA+GGG | 0.478877 | 5.3:-5364734 | MS.gene025792:CDS |
| TGCTCTGCAGTTCAAACAAA+GGG | 0.480096 | 5.3:+5362503 | None:intergenic |
| AGACAGAGGTGGTGTTTGCT+GGG | 0.480683 | 5.3:-5364617 | MS.gene025792:CDS |
| GTTCTCCATTCTTCCATAGC+AGG | 0.489761 | 5.3:+5362014 | None:intergenic |
| GTCATCGGCGCCGGCGCCGG+AGG | 0.490906 | 5.3:-5364969 | MS.gene025792:CDS |
| CACTCCGAACCAATTTGCCT+CGG | 0.495195 | 5.3:-5364785 | MS.gene025792:CDS |
| CACTCGTCACGATAAGTCTC+AGG | 0.501205 | 5.3:+5361951 | None:intergenic |
| GACTTCATTGTACATTGCAC+AGG | 0.505864 | 5.3:-5362962 | MS.gene025792:CDS |
| TCATAATATGGGCACGGGCT+CGG | 0.507929 | 5.3:-5362362 | MS.gene025792:CDS |
| TTTCCTTTCCTTGAAACCAA+TGG | 0.508177 | 5.3:-5362637 | MS.gene025792:CDS |
| TCAGTGCGGTGTTCCTGCTA+TGG | 0.508464 | 5.3:-5362027 | MS.gene025792:CDS |
| GCGTGCTGCTACTAAGCCTC+CGG | 0.510739 | 5.3:+5364953 | None:intergenic |
| ATATGGCTACATCTAAGAAC+AGG | 0.511352 | 5.3:-5361983 | MS.gene025792:CDS |
| ACTTGATCTTGAAAGGGCTC+GGG | 0.512775 | 5.3:+5363612 | None:intergenic |
| AGAAGAATTGGGCGGTTCAT+GGG | 0.513280 | 5.3:-5364886 | MS.gene025792:CDS |
| GTGAGAAGTGGTGTTGCGGT+GGG | 0.518569 | 5.3:+5365008 | None:intergenic |
| TCACTTACTTGATCTTGAAA+GGG | 0.518929 | 5.3:+5363606 | None:intergenic |
| TTGAGATTGGTGATTTGGTG+AGG | 0.519792 | 5.3:-5364644 | MS.gene025792:CDS |
| TTCGAGCGAGGAGAAGAATT+GGG | 0.519829 | 5.3:-5364897 | MS.gene025792:CDS |
| TCTCCCGAGGCAAATTGGTT+CGG | 0.520142 | 5.3:+5364781 | None:intergenic |
| AGCCACATGTTATCATGGCC+AGG | 0.523909 | 5.3:+5363170 | None:intergenic |
| CCCCGCCACGTGGCAGTCAT+CGG | 0.524579 | 5.3:-5364984 | MS.gene025792:CDS |
| AATGAAGCCACATGTTATCA+TGG | 0.526082 | 5.3:+5363165 | None:intergenic |
| ACTCCGAACCAATTTGCCTC+GGG | 0.526203 | 5.3:-5364784 | MS.gene025792:CDS |
| AAGAGGCACACTCATAATAT+GGG | 0.527124 | 5.3:-5362373 | MS.gene025792:CDS |
| GGGAAAGGAGCAACCTTCCA+AGG | 0.527136 | 5.3:+5362523 | None:intergenic |
| ATCTACGGTCACCACACCAT+TGG | 0.533574 | 5.3:+5362621 | None:intergenic |
| TCTGTTGAAGAAGATAAGCT+TGG | 0.538010 | 5.3:-5363200 | MS.gene025792:CDS |
| CATTGCCCTTCCTTCAGAAG+AGG | 0.538791 | 5.3:-5362452 | MS.gene025792:CDS |
| GGAGATGACTAAAGATATTG+AGG | 0.539150 | 5.3:-5362431 | MS.gene025792:CDS |
| TGTAGAAGGTTCCCGAGTCA+TGG | 0.539602 | 5.3:-5364705 | MS.gene025792:CDS |
| ATTGACAGTGTTCATGAAGA+TGG | 0.540078 | 5.3:-5363022 | MS.gene025792:CDS |
| ACACCATTGGTTTCAAGGAA+AGG | 0.541856 | 5.3:+5362634 | None:intergenic |
| GAGATCTAGATCGGTGGAGA+GGG | 0.542522 | 5.3:-5364568 | MS.gene025792:CDS |
| AAGAATCTGGCATTCCTAAG+AGG | 0.544319 | 5.3:-5362390 | MS.gene025792:CDS |
| TCATCTCCTCTTCTGAAGGA+AGG | 0.544426 | 5.3:+5362446 | None:intergenic |
| CATCTCCTCTTCTGAAGGAA+GGG | 0.547731 | 5.3:+5362447 | None:intergenic |
| GGGTGTGAGAAGTGGTGTTG+CGG | 0.549595 | 5.3:+5365004 | None:intergenic |
| CCAGGAATATTGGGAAGTCT+CGG | 0.551573 | 5.3:+5364489 | None:intergenic |
| TTAGTCATCTCCTCTTCTGA+AGG | 0.554548 | 5.3:+5362442 | None:intergenic |
| GGGTGAAGGTGGGAAATGGA+CGG | 0.554732 | 5.3:-5364592 | MS.gene025792:CDS |
| ATCAAAACCTCTCCATGACT+CGG | 0.555813 | 5.3:+5364693 | None:intergenic |
| TGTTTGAACTGCAGAGCAAG+TGG | 0.561360 | 5.3:-5362498 | MS.gene025792:CDS |
| GCACGCGAGCTCCGACGAGA+AGG | 0.564731 | 5.3:-5364936 | MS.gene025792:CDS |
| AATATGAACTTCTTTAGCAA+CGG | 0.565855 | 5.3:+5363232 | None:intergenic |
| TGCAGTTCAAACAAAGGGAA+AGG | 0.568166 | 5.3:+5362508 | None:intergenic |
| GATGCTGTTGTTGTTTGCAA+TGG | 0.576128 | 5.3:-5364525 | MS.gene025792:CDS |
| CGCCGATGACTGCCACGTGG+CGG | 0.576460 | 5.3:+5364982 | None:intergenic |
| GTGTTCCTGCTATGGAAGAA+TGG | 0.577997 | 5.3:-5362019 | MS.gene025792:CDS |
| ATATAAAGGCACCTGAACAT+TGG | 0.580551 | 5.3:+5362339 | None:intergenic |
| GATAAGCTTGGAAAGTTACC+TGG | 0.583301 | 5.3:-5363188 | MS.gene025792:CDS |
| TTGCTCTGCAGTTCAAACAA+AGG | 0.584189 | 5.3:+5362502 | None:intergenic |
| CACACTCATAATATGGGCAC+GGG | 0.585534 | 5.3:-5362367 | MS.gene025792:CDS |
| ACCGTAGATGACAATCGTGT+TGG | 0.587555 | 5.3:-5362607 | MS.gene025792:CDS |
| GACAGAGGTGGTGTTTGCTG+GGG | 0.588809 | 5.3:-5364616 | MS.gene025792:CDS |
| CCGATGACTGCCACGTGGCG+GGG | 0.590887 | 5.3:+5364984 | None:intergenic |
| TAGGTTGTAGTTCTAATAGG+TGG | 0.592013 | 5.3:-5363293 | MS.gene025792:CDS |
| TCGAGAAATATCAACCGCAC+TGG | 0.594589 | 5.3:+5363265 | None:intergenic |
| TGAGATCTAGATCGGTGGAG+AGG | 0.598722 | 5.3:-5364569 | MS.gene025792:CDS |
| TCCAACACGATTGTCATCTA+CGG | 0.599218 | 5.3:+5362606 | None:intergenic |
| CTACTTGATGTCCTTCTCGT+CGG | 0.601788 | 5.3:+5364925 | None:intergenic |
| CGGGTCCAAACCGAGTGGGT+CGG | 0.604890 | 5.3:+5364842 | None:intergenic |
| CGGCGCCGATGACTGCCACG+TGG | 0.606541 | 5.3:+5364979 | None:intergenic |
| AACCCAACAAAGGAAAGCCA+TGG | 0.607422 | 5.3:+5362547 | None:intergenic |
| GCACACTCATAATATGGGCA+CGG | 0.608045 | 5.3:-5362368 | MS.gene025792:CDS |
| ACGTGGCGGGGTGTGAGAAG+TGG | 0.608557 | 5.3:+5364996 | None:intergenic |
| TCAAAACCTCTCCATGACTC+GGG | 0.609566 | 5.3:+5364694 | None:intergenic |
| GAGATAGAATCCGACCCACT+CGG | 0.610030 | 5.3:-5364852 | MS.gene025792:CDS |
| GTGAATTGTATAGGCTCGAG+TGG | 0.612633 | 5.3:+5364805 | None:intergenic |
| AATTTGCCTCGGGAGAGTAT+GGG | 0.615300 | 5.3:-5364774 | MS.gene025792:CDS |
| ATGGACGGTGAGATCTAGAT+CGG | 0.619336 | 5.3:-5364577 | MS.gene025792:CDS |
| GACGGTGAGATCTAGATCGG+TGG | 0.626733 | 5.3:-5364574 | MS.gene025792:CDS |
| GGTTCGGGTCCAAACCGAGT+GGG | 0.626979 | 5.3:+5364838 | None:intergenic |
| AGCCATGGAGCTAACGCCGG+TGG | 0.629282 | 5.3:+5362562 | None:intergenic |
| CAGGCATTAATGCATGGCCA+GGG | 0.629289 | 5.3:-5363665 | MS.gene025792:CDS |
| ATCGGTGGAGAGGGAATGTG+TGG | 0.636731 | 5.3:-5364559 | MS.gene025792:CDS |
| AAGGTTCCCGAGTCATGGAG+AGG | 0.638374 | 5.3:-5364700 | MS.gene025792:CDS |
| GGTTGATATTTCTCGAGACG+TGG | 0.639339 | 5.3:-5363258 | MS.gene025792:CDS |
| CTGAGACTTATCGTGACGAG+TGG | 0.640097 | 5.3:-5361950 | MS.gene025792:CDS |
| TTTCCTTGAAACCAATGGTG+TGG | 0.641481 | 5.3:-5362632 | MS.gene025792:CDS |
| CGGTTCGGGTCCAAACCGAG+TGG | 0.649786 | 5.3:+5364837 | None:intergenic |
| TTTGGTGAGGTTGAAGACAG+AGG | 0.656329 | 5.3:-5364631 | MS.gene025792:CDS |
| GAGCGAGGAGAAGAATTGGG+CGG | 0.661680 | 5.3:-5364894 | MS.gene025792:CDS |
| CAAGTAGTAGTCTTCGAGCG+AGG | 0.661706 | 5.3:-5364909 | MS.gene025792:CDS |
| TGAGACTTATCGTGACGAGT+GGG | 0.661820 | 5.3:-5361949 | MS.gene025792:CDS |
| TACCTGGCCATGATAACATG+TGG | 0.663783 | 5.3:-5363172 | MS.gene025792:CDS |
| CGGAAACCCATACTCTCCCG+AGG | 0.666291 | 5.3:+5364768 | None:intergenic |
| CTTCCAAGGTAACCCAACAA+AGG | 0.675077 | 5.3:+5362537 | None:intergenic |
| GAAAGCCATGGAGCTAACGC+CGG | 0.676417 | 5.3:+5362559 | None:intergenic |
| TGTTCATGAAGATGGTACAG+TGG | 0.683307 | 5.3:-5363014 | MS.gene025792:CDS |
| ACTTCATTGTACATTGCACA+GGG | 0.687673 | 5.3:-5362961 | MS.gene025792:intron |
| ACTTCTCACACCCCGCCACG+TGG | 0.689666 | 5.3:-5364994 | MS.gene025792:CDS |
| GGTGAGGTTGAAGACAGAGG+TGG | 0.690231 | 5.3:-5364628 | MS.gene025792:CDS |
| AATAGGTGGTGCTGCCAGTG+CGG | 0.737644 | 5.3:-5363279 | MS.gene025792:CDS |
| AACTGGATTGCTGATCAGTG+CGG | 0.766461 | 5.3:-5362041 | MS.gene025792:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGCAATAAATAATTTA+AGG | + | chr5.3:5363019-5363038 | None:intergenic | 10.0% |
| !! | ATGAATAATCAAATAAAAAT+TGG | + | chr5.3:5362898-5362917 | None:intergenic | 10.0% |
| !! | CTTATTCATTAAAAAAAAAA+AGG | - | chr5.3:5362784-5362803 | MS.gene025792:intron | 10.0% |
| !! | TTTGATATAACAAAATATAA+AGG | + | chr5.3:5364582-5364601 | None:intergenic | 10.0% |
| !!! | ATGTTTTTATTTTTTTCAAT+TGG | - | chr5.3:5362595-5362614 | MS.gene025792:CDS | 10.0% |
| !!! | TTTTTTTTTTAATGAATAAG+TGG | + | chr5.3:5362784-5362803 | None:intergenic | 10.0% |
| !! | ATTGTACTTATTATTGTTAT+AGG | - | chr5.3:5363108-5363127 | MS.gene025792:intron | 15.0% |
| !! | GTTTAAAAGAAAAACTAATA+GGG | + | chr5.3:5363982-5364001 | None:intergenic | 15.0% |
| !! | AATAGTTAACTATCCTTTAA+TGG | - | chr5.3:5364794-5364813 | MS.gene025792:CDS | 20.0% |
| !! | ATTAGAAAACAGAATATAAG+AGG | + | chr5.3:5362523-5362542 | None:intergenic | 20.0% |
| !! | CAAAATTCAACTTAACAATT+CGG | - | chr5.3:5363206-5363225 | MS.gene025792:CDS | 20.0% |
| !! | GGTTTAAAAGAAAAACTAAT+AGG | + | chr5.3:5363983-5364002 | None:intergenic | 20.0% |
| !! | TAACTAAAAAAGAATCCTAA+TGG | + | chr5.3:5363350-5363369 | None:intergenic | 20.0% |
| !!! | ATGTCTCTTTCTTATTTATA+TGG | - | chr5.3:5362451-5362470 | MS.gene025792:CDS | 20.0% |
| !!! | ATTTAGTTTAAAGACTAACA+AGG | + | chr5.3:5362631-5362650 | None:intergenic | 20.0% |
| ! | AAGAAAATAACCAGGAATAT+TGG | + | chr5.3:5362428-5362447 | None:intergenic | 25.0% |
| ! | AATATGAACTTCTTTAGCAA+CGG | + | chr5.3:5363675-5363694 | None:intergenic | 25.0% |
| ! | ACAAATTCAAATAGCTCATT+TGG | - | chr5.3:5363397-5363416 | MS.gene025792:intron | 25.0% |
| ! | AGAAAATAACCAGGAATATT+GGG | + | chr5.3:5362427-5362446 | None:intergenic | 25.0% |
| ! | ATATGTATTGTTATAAGCAG+GGG | - | chr5.3:5362737-5362756 | MS.gene025792:intron | 25.0% |
| ! | ATATTGATACTAGTTCCATT+AGG | - | chr5.3:5363332-5363351 | MS.gene025792:intron | 25.0% |
| ! | ATTAGTAACCATAAACTGTT+TGG | - | chr5.3:5363811-5363830 | MS.gene025792:intron | 25.0% |
| ! | ATTCTTAATTGTTCAGACTT+AGG | - | chr5.3:5364654-5364673 | MS.gene025792:CDS | 25.0% |
| ! | GAAATGAAATTGAAAAAGCT+TGG | + | chr5.3:5362546-5362565 | None:intergenic | 25.0% |
| ! | GATATGTATTGTTATAAGCA+GGG | - | chr5.3:5362736-5362755 | MS.gene025792:intron | 25.0% |
| ! | TGTTTCTTCTTGTATTATAG+TGG | - | chr5.3:5364616-5364635 | MS.gene025792:CDS | 25.0% |
| ! | TTACCTTTCAACAAAAATGT+TGG | - | chr5.3:5362864-5362883 | MS.gene025792:intron | 25.0% |
| ! | TTAGAAGAAAAGAAGAGAAA+GGG | - | chr5.3:5362170-5362189 | MS.gene025792:intron | 25.0% |
| ! | TTGAGGACTCAAATATATTT+AGG | - | chr5.3:5364139-5364158 | MS.gene025792:intron | 25.0% |
| ! | TTTAGAAGAAAAGAAGAGAA+AGG | - | chr5.3:5362169-5362188 | MS.gene025792:intron | 25.0% |
| !! | TTCTCTTCTTTTCTTCTAAA+AGG | + | chr5.3:5362169-5362188 | None:intergenic | 25.0% |
| !! | TTTTAAACCAGTTTATGTTG+TGG | - | chr5.3:5363994-5364013 | MS.gene025792:intron | 25.0% |
| !!! | ATGGTAAAACTTGTTATCTA+TGG | - | chr5.3:5363764-5363783 | MS.gene025792:intron | 25.0% |
| !!! | TAAGTTTTAAATCGCAAATG+CGG | - | chr5.3:5364020-5364039 | MS.gene025792:intron | 25.0% |
| !!! | TCTCTTCTTTTCTTCTAAAA+GGG | + | chr5.3:5362168-5362187 | None:intergenic | 25.0% |
| !!! | TTCTATCCATTTTTTGTGTT+GGG | - | chr5.3:5363587-5363606 | MS.gene025792:intron | 25.0% |
| !!! | TTTTTTCAATTGGAATGACA+TGG | - | chr5.3:5362605-5362624 | MS.gene025792:CDS | 25.0% |
| !!! | TTTTTTGTCAAGTAATCTGA+TGG | + | chr5.3:5362820-5362839 | None:intergenic | 25.0% |
| AACATATCAGGTTCCATTAA+AGG | + | chr5.3:5364810-5364829 | None:intergenic | 30.0% | |
| ACAGTTATCCAAACAGTTTA+TGG | + | chr5.3:5363822-5363841 | None:intergenic | 30.0% | |
| AGAACATGGTTAAAAAAACC+AGG | + | chr5.3:5364732-5364751 | None:intergenic | 30.0% | |
| AGCATATGTAATATGTTCGA+TGG | + | chr5.3:5363529-5363548 | None:intergenic | 30.0% | |
| ATATATTTGAGTCCTCAACA+TGG | + | chr5.3:5364137-5364156 | None:intergenic | 30.0% | |
| ATCACTTACTTGATCTTGAA+AGG | + | chr5.3:5363302-5363321 | None:intergenic | 30.0% | |
| ATCATACTTGTACCTAGAAA+AGG | + | chr5.3:5364247-5364266 | None:intergenic | 30.0% | |
| GGATATGTATTGTTATAAGC+AGG | - | chr5.3:5362735-5362754 | MS.gene025792:intron | 30.0% | |
| GTTGCTATAACATTGCAATT+TGG | + | chr5.3:5364090-5364109 | None:intergenic | 30.0% | |
| TAACCATGTTCTGTTTCAAA+AGG | - | chr5.3:5364740-5364759 | MS.gene025792:CDS | 30.0% | |
| TAATGGAACCTGATATGTTA+AGG | - | chr5.3:5364811-5364830 | MS.gene025792:CDS | 30.0% | |
| TACACATTCCTTAACATATC+AGG | + | chr5.3:5364822-5364841 | None:intergenic | 30.0% | |
| TATACAGAGCTAAAATATCC+TGG | - | chr5.3:5364711-5364730 | MS.gene025792:CDS | 30.0% | |
| TATCTATGGTGAGAATTAGA+TGG | - | chr5.3:5363778-5363797 | MS.gene025792:intron | 30.0% | |
| TATGGTTACTAATGTCATGA+TGG | + | chr5.3:5363804-5363823 | None:intergenic | 30.0% | |
| TCAAGATCAAGTAAGTGATA+TGG | - | chr5.3:5363303-5363322 | MS.gene025792:intron | 30.0% | |
| TCACTTACTTGATCTTGAAA+GGG | + | chr5.3:5363301-5363320 | None:intergenic | 30.0% | |
| ! | TGACCAACATTTTTGTTGAA+AGG | + | chr5.3:5362870-5362889 | None:intergenic | 30.0% |
| ! | TGCAATTTAAAACCATGTTG+AGG | - | chr5.3:5364122-5364141 | MS.gene025792:intron | 30.0% |
| ! | TTCTTCTAAAAGGGTAATCT+CGG | + | chr5.3:5362159-5362178 | None:intergenic | 30.0% |
| !! | AGAGGTTTTGATGTATTTGA+AGG | - | chr5.3:5362222-5362241 | MS.gene025792:intron | 30.0% |
| !! | CTGCAATATAAATGTTTTGG+AGG | - | chr5.3:5364043-5364062 | MS.gene025792:intron | 30.0% |
| !! | TTGCATTTGACTTCATTTTG+TGG | + | chr5.3:5364690-5364709 | None:intergenic | 30.0% |
| !!! | AGATTTTGAGATTGGTGATT+TGG | - | chr5.3:5362255-5362274 | MS.gene025792:intron | 30.0% |
| !!! | CTTCTATCCATTTTTTGTGT+TGG | - | chr5.3:5363586-5363605 | MS.gene025792:intron | 30.0% |
| !!! | TCTATCCATTTTTTGTGTTG+GGG | - | chr5.3:5363588-5363607 | MS.gene025792:intron | 30.0% |
| !!! | TTTGCTGAAGATTTTGAGAT+TGG | - | chr5.3:5362247-5362266 | MS.gene025792:intron | 30.0% |
| AATGAAGCCACATGTTATCA+TGG | + | chr5.3:5363742-5363761 | None:intergenic | 35.0% | |
| ACTTCATTGTACATTGCACA+GGG | - | chr5.3:5363943-5363962 | MS.gene025792:intron | 35.0% | |
| ACTTTATGAATGTGCTAGAG+TGG | + | chr5.3:5362478-5362497 | None:intergenic | 35.0% | |
| AGACTTTATGTCTCAATTGC+AGG | + | chr5.3:5364174-5364193 | None:intergenic | 35.0% | |
| ATATGGCTACATCTAAGAAC+AGG | - | chr5.3:5364921-5364940 | MS.gene025792:CDS | 35.0% | |
| ATATTATGAGTGTGCCTCTT+AGG | + | chr5.3:5364531-5364550 | None:intergenic | 35.0% | |
| ATGGAGAACGCAAATGTATA+TGG | - | chr5.3:5364904-5364923 | MS.gene025792:CDS | 35.0% | |
| ATTGACAGTGTTCATGAAGA+TGG | - | chr5.3:5363882-5363901 | MS.gene025792:intron | 35.0% | |
| CATTGCAATTTGGACATTGT+CGG | + | chr5.3:5364080-5364099 | None:intergenic | 35.0% | |
| CTTAAGTCCACAACATAAAC+TGG | + | chr5.3:5364004-5364023 | None:intergenic | 35.0% | |
| GACATGAGAAGAAAATAACC+AGG | + | chr5.3:5362436-5362455 | None:intergenic | 35.0% | |
| GGAGATGACTAAAGATATTG+AGG | - | chr5.3:5364473-5364492 | MS.gene025792:intron | 35.0% | |
| GTACCTAGAAAAGGAACAAA+TGG | + | chr5.3:5364238-5364257 | None:intergenic | 35.0% | |
| TAACATGTGGCTTCATTCTA+TGG | - | chr5.3:5363745-5363764 | MS.gene025792:intron | 35.0% | |
| TAATGAATAAGTGGTGTGTC+CGG | + | chr5.3:5362775-5362794 | None:intergenic | 35.0% | |
| TCTGTTGAAGAAGATAAGCT+TGG | - | chr5.3:5363704-5363723 | MS.gene025792:intron | 35.0% | |
| TTGCAATGTTATAGCAACGA+CGG | - | chr5.3:5364092-5364111 | MS.gene025792:intron | 35.0% | |
| TTTCCTTTCCTTGAAACCAA+TGG | - | chr5.3:5364267-5364286 | MS.gene025792:intron | 35.0% | |
| ! | AAGAGGCACACTCATAATAT+GGG | - | chr5.3:5364531-5364550 | MS.gene025792:CDS | 35.0% |
| ! | ACAATTCGGATAACCTTTTC+AGG | - | chr5.3:5363220-5363239 | MS.gene025792:CDS | 35.0% |
| ! | CGGCTGCAATATAAATGTTT+TGG | - | chr5.3:5364040-5364059 | MS.gene025792:intron | 35.0% |
| ! | TAAGAGGCACACTCATAATA+TGG | - | chr5.3:5364530-5364549 | MS.gene025792:CDS | 35.0% |
| ! | TACTTGTCACTTGAAGAATC+TGG | - | chr5.3:5364501-5364520 | MS.gene025792:CDS | 35.0% |
| ! | TGTCCATTTGTTCCTTTTCT+AGG | - | chr5.3:5364232-5364251 | MS.gene025792:intron | 35.0% |
| !! | ATATAAAGGCACCTGAACAT+TGG | + | chr5.3:5364568-5364587 | None:intergenic | 35.0% |
| !! | TAGGTTGTAGTTCTAATAGG+TGG | - | chr5.3:5363611-5363630 | MS.gene025792:intron | 35.0% |
| !!! | ATGCCTTTTGAAACAGAACA+TGG | + | chr5.3:5364746-5364765 | None:intergenic | 35.0% |
| AAGAATCTGGCATTCCTAAG+AGG | - | chr5.3:5364514-5364533 | MS.gene025792:CDS | 40.0% | |
| AATGAATAAGTGGTGTGTCC+GGG | + | chr5.3:5362774-5362793 | None:intergenic | 40.0% | |
| ACCTACCCCAACACAAAAAA+TGG | + | chr5.3:5363596-5363615 | None:intergenic | 40.0% | |
| AGAAAGGGAGAGATTGTAGA+AGG | - | chr5.3:5362185-5362204 | MS.gene025792:intron | 40.0% | |
| AGGAATGTGTATTCTTGCAG+TGG | - | chr5.3:5364831-5364850 | MS.gene025792:CDS | 40.0% | |
| ATCAAAACCTCTCCATGACT+CGG | + | chr5.3:5362214-5362233 | None:intergenic | 40.0% | |
| CCATGCATTAATGCCTGAAA+AGG | + | chr5.3:5363236-5363255 | None:intergenic | 40.0% | |
| GACTTCATTGTACATTGCAC+AGG | - | chr5.3:5363942-5363961 | MS.gene025792:intron | 40.0% | |
| GATAAGCTTGGAAAGTTACC+TGG | - | chr5.3:5363716-5363735 | MS.gene025792:intron | 40.0% | |
| GGAAAAACATGCTTGTAGAG+CGG | + | chr5.3:5364324-5364343 | None:intergenic | 40.0% | |
| GGAATGTGTATTCTTGCAGT+GGG | - | chr5.3:5364832-5364851 | MS.gene025792:CDS | 40.0% | |
| TACTTGATCTTGAAAGGGCT+CGG | + | chr5.3:5363296-5363315 | None:intergenic | 40.0% | |
| TCCAACACGATTGTCATCTA+CGG | + | chr5.3:5364301-5364320 | None:intergenic | 40.0% | |
| TGCAATGTTATAGCAACGAC+GGG | - | chr5.3:5364093-5364112 | MS.gene025792:intron | 40.0% | |
| TGCAGTTCAAACAAAGGGAA+AGG | + | chr5.3:5364399-5364418 | None:intergenic | 40.0% | |
| TGCTCTGCAGTTCAAACAAA+GGG | + | chr5.3:5364404-5364423 | None:intergenic | 40.0% | |
| TGTATTGTTATAAGCAGGGG+CGG | - | chr5.3:5362740-5362759 | MS.gene025792:intron | 40.0% | |
| TGTTCATGAAGATGGTACAG+TGG | - | chr5.3:5363890-5363909 | MS.gene025792:intron | 40.0% | |
| TTAGTCATCTCCTCTTCTGA+AGG | + | chr5.3:5364465-5364484 | None:intergenic | 40.0% | |
| TTGCTCTGCAGTTCAAACAA+AGG | + | chr5.3:5364405-5364424 | None:intergenic | 40.0% | |
| TTGGACATTGTCGGTAAATG+TGG | + | chr5.3:5364071-5364090 | None:intergenic | 40.0% | |
| TTTCCTTGAAACCAATGGTG+TGG | - | chr5.3:5364272-5364291 | MS.gene025792:intron | 40.0% | |
| TTTCCTTTGTTGGGTTACCT+TGG | - | chr5.3:5364364-5364383 | MS.gene025792:intron | 40.0% | |
| ! | CTACAAGCATGTTTTTCCAC+CGG | - | chr5.3:5364326-5364345 | MS.gene025792:intron | 40.0% |
| ! | GGTACAGTGGTTTTCAAAGA+TGG | - | chr5.3:5363903-5363922 | MS.gene025792:intron | 40.0% |
| ! | TGGTTCGGAGTGAATTGTAT+AGG | + | chr5.3:5362111-5362130 | None:intergenic | 40.0% |
| !! | ACACCATTGGTTTCAAGGAA+AGG | + | chr5.3:5364273-5364292 | None:intergenic | 40.0% |
| !! | CCTTTTCAGGCATTAATGCA+TGG | - | chr5.3:5363233-5363252 | MS.gene025792:CDS | 40.0% |
| !! | GATGCTGTTGTTGTTTGCAA+TGG | - | chr5.3:5362379-5362398 | MS.gene025792:CDS | 40.0% |
| !! | GGGTAGGTTGTAGTTCTAAT+AGG | - | chr5.3:5363608-5363627 | MS.gene025792:intron | 40.0% |
| !! | TTGAGATTGGTGATTTGGTG+AGG | - | chr5.3:5362260-5362279 | MS.gene025792:intron | 40.0% |
| !!! | TAGCTCATTTGGTTTTGCGT+TGG | - | chr5.3:5363408-5363427 | MS.gene025792:intron | 40.0% |
| !!! | TCCATTTTTTGTGTTGGGGT+AGG | - | chr5.3:5363592-5363611 | MS.gene025792:intron | 40.0% |
| AACCCAACAAAGGAAAGCCA+TGG | + | chr5.3:5364360-5364379 | None:intergenic | 45.0% | |
| AACTGGATTGCTGATCAGTG+CGG | - | chr5.3:5364863-5364882 | MS.gene025792:CDS | 45.0% | |
| ACCGTAGATGACAATCGTGT+TGG | - | chr5.3:5364297-5364316 | MS.gene025792:intron | 45.0% | |
| ACTTGATCTTGAAAGGGCTC+GGG | + | chr5.3:5363295-5363314 | None:intergenic | 45.0% | |
| AGAAGAATTGGGCGGTTCAT+GGG | - | chr5.3:5362018-5362037 | MS.gene025792:CDS | 45.0% | |
| ATGGACGGTGAGATCTAGAT+CGG | - | chr5.3:5362327-5362346 | MS.gene025792:intron | 45.0% | |
| ATGGTGCGTTACATTGGACA+CGG | + | chr5.3:5363510-5363529 | None:intergenic | 45.0% | |
| CACACTCATAATATGGGCAC+GGG | - | chr5.3:5364537-5364556 | MS.gene025792:CDS | 45.0% | |
| CCAGGAATATTGGGAAGTCT+CGG | + | chr5.3:5362418-5362437 | None:intergenic | 45.0% | |
| CTACTTGATGTCCTTCTCGT+CGG | + | chr5.3:5361982-5362001 | None:intergenic | 45.0% | |
| CTCCATGGCTTTCCTTTGTT+GGG | - | chr5.3:5364355-5364374 | MS.gene025792:intron | 45.0% | |
| CTTCCAAGGTAACCCAACAA+AGG | + | chr5.3:5364370-5364389 | None:intergenic | 45.0% | |
| CTTTGTTGGGTTACCTTGGA+AGG | - | chr5.3:5364368-5364387 | MS.gene025792:intron | 45.0% | |
| GCACACTCATAATATGGGCA+CGG | - | chr5.3:5364536-5364555 | MS.gene025792:CDS | 45.0% | |
| GCTCGGGTGTTCTGTAATTA+TGG | + | chr5.3:5363279-5363298 | None:intergenic | 45.0% | |
| GTATTGTTATAAGCAGGGGC+GGG | - | chr5.3:5362741-5362760 | MS.gene025792:intron | 45.0% | |
| GTGAATTGTATAGGCTCGAG+TGG | + | chr5.3:5362102-5362121 | None:intergenic | 45.0% | |
| GTGTTCCTGCTATGGAAGAA+TGG | - | chr5.3:5364885-5364904 | MS.gene025792:CDS | 45.0% | |
| GTTCTCCATTCTTCCATAGC+AGG | + | chr5.3:5364893-5364912 | None:intergenic | 45.0% | |
| TACCTGGCCATGATAACATG+TGG | - | chr5.3:5363732-5363751 | MS.gene025792:intron | 45.0% | |
| TATTGTTATAAGCAGGGGCG+GGG | - | chr5.3:5362742-5362761 | MS.gene025792:intron | 45.0% | |
| TCAAAACCTCTCCATGACTC+GGG | + | chr5.3:5362213-5362232 | None:intergenic | 45.0% | |
| TCGAGAAATATCAACCGCAC+TGG | + | chr5.3:5363642-5363661 | None:intergenic | 45.0% | |
| TGAGACTTATCGTGACGAGT+GGG | - | chr5.3:5364955-5364974 | MS.gene025792:CDS | 45.0% | |
| TGCAGTGGGACTACAATAAC+TGG | - | chr5.3:5364846-5364865 | MS.gene025792:CDS | 45.0% | |
| TGTTCGATGGTGCGTTACAT+TGG | + | chr5.3:5363516-5363535 | None:intergenic | 45.0% | |
| TGTTTGAACTGCAGAGCAAG+TGG | - | chr5.3:5364406-5364425 | MS.gene025792:intron | 45.0% | |
| TTCGAGCGAGGAGAAGAATT+GGG | - | chr5.3:5362007-5362026 | MS.gene025792:CDS | 45.0% | |
| TTTGGTGAGGTTGAAGACAG+AGG | - | chr5.3:5362273-5362292 | MS.gene025792:intron | 45.0% | |
| ! | AATTTGCCTCGGGAGAGTAT+GGG | - | chr5.3:5362130-5362149 | MS.gene025792:intron | 45.0% |
| ! | CATCTCCTCTTCTGAAGGAA+GGG | + | chr5.3:5364460-5364479 | None:intergenic | 45.0% |
| ! | GGTTGATATTTCTCGAGACG+TGG | - | chr5.3:5363646-5363665 | MS.gene025792:CDS | 45.0% |
| ! | TCATCTCCTCTTCTGAAGGA+AGG | + | chr5.3:5364461-5364480 | None:intergenic | 45.0% |
| !! | TCACCACACCATTGGTTTCA+AGG | + | chr5.3:5364278-5364297 | None:intergenic | 45.0% |
| !!! | AGAAATAATTTTTTTAAAAA+AGG | - | chr5.3:5363156-5363175 | MS.gene025792:intron | 5.0% |
| !!! | TTATATCAAATTTTTTTATT+AGG | - | chr5.3:5364592-5364611 | MS.gene025792:CDS | 5.0% |
| AAGACAGAGGTGGTGTTTGC+TGG | - | chr5.3:5362286-5362305 | MS.gene025792:intron | 50.0% | |
| ACTCCGAACCAATTTGCCTC+GGG | - | chr5.3:5362120-5362139 | MS.gene025792:intron | 50.0% | |
| AGACAGAGGTGGTGTTTGCT+GGG | - | chr5.3:5362287-5362306 | MS.gene025792:intron | 50.0% | |
| AGCCAACTGAGCTATGCTCA+TGG | + | chr5.3:5362714-5362733 | None:intergenic | 50.0% | |
| AGCCACATGTTATCATGGCC+AGG | + | chr5.3:5363737-5363756 | None:intergenic | 50.0% | |
| AGTGGATAAGCTTCCGGTTC+GGG | + | chr5.3:5362084-5362103 | None:intergenic | 50.0% | |
| AGTGGGTCGGATTCTATCTC+TGG | + | chr5.3:5362052-5362071 | None:intergenic | 50.0% | |
| ATCTACGGTCACCACACCAT+TGG | + | chr5.3:5364286-5364305 | None:intergenic | 50.0% | |
| ATGAGCATAGCTCAGTTGGC+TGG | - | chr5.3:5362713-5362732 | MS.gene025792:intron | 50.0% | |
| ATTGGACACGGACGTCACTT+TGG | + | chr5.3:5363498-5363517 | None:intergenic | 50.0% | |
| CAAGTAGTAGTCTTCGAGCG+AGG | - | chr5.3:5361995-5362014 | MS.gene025792:CDS | 50.0% | |
| CAATTTGCCTCGGGAGAGTA+TGG | - | chr5.3:5362129-5362148 | MS.gene025792:intron | 50.0% | |
| CACTCCGAACCAATTTGCCT+CGG | - | chr5.3:5362119-5362138 | MS.gene025792:intron | 50.0% | |
| CACTCGTCACGATAAGTCTC+AGG | + | chr5.3:5364956-5364975 | None:intergenic | 50.0% | |
| CAGGCATTAATGCATGGCCA+GGG | - | chr5.3:5363239-5363258 | MS.gene025792:CDS | 50.0% | |
| CATACTCTCCCGAGGCAAAT+TGG | + | chr5.3:5362131-5362150 | None:intergenic | 50.0% | |
| CATTGCCCTTCCTTCAGAAG+AGG | - | chr5.3:5364452-5364471 | MS.gene025792:intron | 50.0% | |
| CCGAGACTTCCCAATATTCC+TGG | - | chr5.3:5362415-5362434 | MS.gene025792:CDS | 50.0% | |
| CTGAGACTTATCGTGACGAG+TGG | - | chr5.3:5364954-5364973 | MS.gene025792:CDS | 50.0% | |
| CTTCGAGCGAGGAGAAGAAT+TGG | - | chr5.3:5362006-5362025 | MS.gene025792:CDS | 50.0% | |
| GAGAAGAATTGGGCGGTTCA+TGG | - | chr5.3:5362017-5362036 | MS.gene025792:CDS | 50.0% | |
| GAGATAGAATCCGACCCACT+CGG | - | chr5.3:5362052-5362071 | MS.gene025792:CDS | 50.0% | |
| GAGATCTAGATCGGTGGAGA+GGG | - | chr5.3:5362336-5362355 | MS.gene025792:intron | 50.0% | |
| GAGTGGATAAGCTTCCGGTT+CGG | + | chr5.3:5362085-5362104 | None:intergenic | 50.0% | |
| GCCAACTGAGCTATGCTCAT+GGG | + | chr5.3:5362713-5362732 | None:intergenic | 50.0% | |
| GCTCCATGGCTTTCCTTTGT+TGG | - | chr5.3:5364354-5364373 | MS.gene025792:intron | 50.0% | |
| TCAGGCATTAATGCATGGCC+AGG | - | chr5.3:5363238-5363257 | MS.gene025792:CDS | 50.0% | |
| TCATAATATGGGCACGGGCT+CGG | - | chr5.3:5364542-5364561 | MS.gene025792:CDS | 50.0% | |
| TCCCATGAGCATAGCTCAGT+TGG | - | chr5.3:5362709-5362728 | MS.gene025792:intron | 50.0% | |
| TCTCCCGAGGCAAATTGGTT+CGG | + | chr5.3:5362126-5362145 | None:intergenic | 50.0% | |
| TGAGATCTAGATCGGTGGAG+AGG | - | chr5.3:5362335-5362354 | MS.gene025792:intron | 50.0% | |
| TGAGCATAGCTCAGTTGGCT+GGG | - | chr5.3:5362714-5362733 | MS.gene025792:intron | 50.0% | |
| TGGCTATGCATTTGCTTCCC+TGG | + | chr5.3:5363259-5363278 | None:intergenic | 50.0% | |
| TGTAGAAGGTTCCCGAGTCA+TGG | - | chr5.3:5362199-5362218 | MS.gene025792:intron | 50.0% | |
| AAGGTTCCCGAGTCATGGAG+AGG | - | chr5.3:5362204-5362223 | MS.gene025792:intron | 55.0% | |
| AGAATCCGACCCACTCGGTT+TGG | - | chr5.3:5362057-5362076 | MS.gene025792:intron | 55.0% | |
| ATCGGTGGAGAGGGAATGTG+TGG | - | chr5.3:5362345-5362364 | MS.gene025792:intron | 55.0% | |
| CTGCAGAGCAAGTGGATAGC+TGG | - | chr5.3:5364414-5364433 | MS.gene025792:intron | 55.0% | |
| GAAAGCCATGGAGCTAACGC+CGG | + | chr5.3:5364348-5364367 | None:intergenic | 55.0% | |
| GACGGTGAGATCTAGATCGG+TGG | - | chr5.3:5362330-5362349 | MS.gene025792:intron | 55.0% | |
| GAGCGAGGAGAAGAATTGGG+CGG | - | chr5.3:5362010-5362029 | MS.gene025792:CDS | 55.0% | |
| GGCTCGAGTGGATAAGCTTC+CGG | + | chr5.3:5362090-5362109 | None:intergenic | 55.0% | |
| GGGAAAGGAGCAACCTTCCA+AGG | + | chr5.3:5364384-5364403 | None:intergenic | 55.0% | |
| GGGTGAAGGTGGGAAATGGA+CGG | - | chr5.3:5362312-5362331 | MS.gene025792:intron | 55.0% | |
| GGTGAGGTTGAAGACAGAGG+TGG | - | chr5.3:5362276-5362295 | MS.gene025792:intron | 55.0% | |
| TCAGTGCGGTGTTCCTGCTA+TGG | - | chr5.3:5364877-5364896 | MS.gene025792:CDS | 55.0% | |
| ! | GACAGAGGTGGTGTTTGCTG+GGG | - | chr5.3:5362288-5362307 | MS.gene025792:intron | 55.0% |
| ! | GGGTGTGAGAAGTGGTGTTG+CGG | + | chr5.3:5361903-5361922 | None:intergenic | 55.0% |
| !! | AATAGGTGGTGCTGCCAGTG+CGG | - | chr5.3:5363625-5363644 | MS.gene025792:CDS | 55.0% |
| !! | GTGAGAAGTGGTGTTGCGGT+GGG | + | chr5.3:5361899-5361918 | None:intergenic | 55.0% |
| !! | TGTGAGAAGTGGTGTTGCGG+TGG | + | chr5.3:5361900-5361919 | None:intergenic | 55.0% |
| CGGAAACCCATACTCTCCCG+AGG | + | chr5.3:5362139-5362158 | None:intergenic | 60.0% | |
| GGGTGGGTGAAGGTGGGAAA+TGG | - | chr5.3:5362308-5362327 | MS.gene025792:intron | 60.0% | |
| GGTTCGGGTCCAAACCGAGT+GGG | + | chr5.3:5362069-5362088 | None:intergenic | 60.0% | |
| TTCCACCGGCGTTAGCTCCA+TGG | - | chr5.3:5364340-5364359 | MS.gene025792:intron | 60.0% | |
| TTGCTGGGGTGGGTGAAGGT+GGG | - | chr5.3:5362302-5362321 | MS.gene025792:intron | 60.0% | |
| TTTGCTGGGGTGGGTGAAGG+TGG | - | chr5.3:5362301-5362320 | MS.gene025792:intron | 60.0% | |
| ! | AGAGGTGGTGTTTGCTGGGG+TGG | - | chr5.3:5362291-5362310 | MS.gene025792:intron | 60.0% |
| ! | GAGGTGGTGTTTGCTGGGGT+GGG | - | chr5.3:5362292-5362311 | MS.gene025792:intron | 60.0% |
| ! | GCGTGCTGCTACTAAGCCTC+CGG | + | chr5.3:5361954-5361973 | None:intergenic | 60.0% |
| ! | GTGTTTGCTGGGGTGGGTGA+AGG | - | chr5.3:5362298-5362317 | MS.gene025792:intron | 60.0% |
| !! | CACTCGGTTTGGACCCGAAC+CGG | - | chr5.3:5362068-5362087 | MS.gene025792:intron | 60.0% |
| ACTTCTCACACCCCGCCACG+TGG | - | chr5.3:5361910-5361929 | MS.gene025792:CDS | 65.0% | |
| AGCCATGGAGCTAACGCCGG+TGG | + | chr5.3:5364345-5364364 | None:intergenic | 65.0% | |
| CACGGGCTCGGCCAATGTTC+AGG | - | chr5.3:5364554-5364573 | MS.gene025792:CDS | 65.0% | |
| CGGGTCCAAACCGAGTGGGT+CGG | + | chr5.3:5362065-5362084 | None:intergenic | 65.0% | |
| TGCTACTAAGCCTCCGGCGC+CGG | + | chr5.3:5361948-5361967 | None:intergenic | 65.0% | |
| ! | ACGTGGCGGGGTGTGAGAAG+TGG | + | chr5.3:5361911-5361930 | None:intergenic | 65.0% |
| ! | CGGTTCGGGTCCAAACCGAG+TGG | + | chr5.3:5362070-5362089 | None:intergenic | 65.0% |
| CACGTGGCAGTCATCGGCGC+CGG | - | chr5.3:5361926-5361945 | MS.gene025792:CDS | 70.0% | |
| CCCCGCCACGTGGCAGTCAT+CGG | - | chr5.3:5361920-5361939 | MS.gene025792:CDS | 70.0% | |
| CCGATGACTGCCACGTGGCG+GGG | + | chr5.3:5361923-5361942 | None:intergenic | 70.0% | |
| CGCCGATGACTGCCACGTGG+CGG | + | chr5.3:5361925-5361944 | None:intergenic | 70.0% | |
| GCACGCGAGCTCCGACGAGA+AGG | - | chr5.3:5361968-5361987 | MS.gene025792:CDS | 70.0% | |
| GCCGATGACTGCCACGTGGC+GGG | + | chr5.3:5361924-5361943 | None:intergenic | 70.0% | |
| GCAGGGGCGGGGTCTGAACC+CGG | - | chr5.3:5362753-5362772 | MS.gene025792:intron | 75.0% | |
| !! | CGGCGCCGATGACTGCCACG+TGG | + | chr5.3:5361928-5361947 | None:intergenic | 75.0% |
| !!! | GCAGTCATCGGCGCCGGCGC+CGG | - | chr5.3:5361932-5361951 | MS.gene025792:CDS | 80.0% |
| !!! | GTCATCGGCGCCGGCGCCGG+AGG | - | chr5.3:5361935-5361954 | MS.gene025792:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 5361893 | 5365033 | 5361893 | ID=MS.gene025792 |
| chr5.3 | mRNA | 5361893 | 5365033 | 5361893 | ID=MS.gene025792.t1;Parent=MS.gene025792 |
| chr5.3 | exon | 5364490 | 5365033 | 5364490 | ID=MS.gene025792.t1.exon1;Parent=MS.gene025792.t1 |
| chr5.3 | CDS | 5364490 | 5365033 | 5364490 | ID=cds.MS.gene025792.t1;Parent=MS.gene025792.t1 |
| chr5.3 | exon | 5363614 | 5363684 | 5363614 | ID=MS.gene025792.t1.exon2;Parent=MS.gene025792.t1 |
| chr5.3 | CDS | 5363614 | 5363684 | 5363614 | ID=cds.MS.gene025792.t1;Parent=MS.gene025792.t1 |
| chr5.3 | exon | 5363160 | 5363312 | 5363160 | ID=MS.gene025792.t1.exon3;Parent=MS.gene025792.t1 |
| chr5.3 | CDS | 5363160 | 5363312 | 5363160 | ID=cds.MS.gene025792.t1;Parent=MS.gene025792.t1 |
| chr5.3 | exon | 5362962 | 5363044 | 5362962 | ID=MS.gene025792.t1.exon4;Parent=MS.gene025792.t1 |
| chr5.3 | CDS | 5362962 | 5363044 | 5362962 | ID=cds.MS.gene025792.t1;Parent=MS.gene025792.t1 |
| chr5.3 | exon | 5362351 | 5362672 | 5362351 | ID=MS.gene025792.t1.exon5;Parent=MS.gene025792.t1 |
| chr5.3 | CDS | 5362351 | 5362672 | 5362351 | ID=cds.MS.gene025792.t1;Parent=MS.gene025792.t1 |
| chr5.3 | exon | 5361893 | 5362075 | 5361893 | ID=MS.gene025792.t1.exon6;Parent=MS.gene025792.t1 |
| chr5.3 | CDS | 5361893 | 5362075 | 5361893 | ID=cds.MS.gene025792.t1;Parent=MS.gene025792.t1 |
| Gene Sequence |
| Protein sequence |
