Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99127.t1 | XP_013459365.1 | 95.6 | 456 | 18 | 1 | 1 | 454 | 1 | 456 | 2.60E-262 | 914.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99127.t1 | Q9FLK4 | 68.1 | 451 | 137 | 5 | 6 | 452 | 11 | 458 | 1.1e-184 | 647.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99127.t1 | A0A072UVJ0 | 95.6 | 456 | 18 | 1 | 1 | 454 | 1 | 456 | 1.9e-262 | 914.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene99127 | 0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene049596 | MS.gene99127 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene99127 | 0.842561 | 2.40E-58 | -1.69E-46 |
| MS.gene050297 | MS.gene99127 | 0.841369 | 4.96E-58 | -1.69E-46 |
| MS.gene050326 | MS.gene99127 | 0.810759 | 9.83E-51 | -1.69E-46 |
| MS.gene050328 | MS.gene99127 | 0.802378 | 5.77E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene99127 | 0.825491 | 4.55E-54 | -1.69E-46 |
| MS.gene05124 | MS.gene99127 | 0.805811 | 1.11E-49 | -1.69E-46 |
| MS.gene052143 | MS.gene99127 | 0.86406 | 1.59E-64 | -1.69E-46 |
| MS.gene052225 | MS.gene99127 | 0.81571 | 8.04E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene99127 | 0.812244 | 4.67E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene99127 | 0.874326 | 7.37E-68 | -1.69E-46 |
| MS.gene052383 | MS.gene99127 | 0.827966 | 1.17E-54 | -1.69E-46 |
| MS.gene053173 | MS.gene99127 | 0.848649 | 5.36E-60 | -1.69E-46 |
| MS.gene053416 | MS.gene99127 | 0.854709 | 1.03E-61 | -1.69E-46 |
| MS.gene053417 | MS.gene99127 | 0.85403 | 1.61E-61 | -1.69E-46 |
| MS.gene053569 | MS.gene99127 | 0.804101 | 2.54E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene99127 | 0.834313 | 3.22E-56 | -1.69E-46 |
| MS.gene054593 | MS.gene99127 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene054614 | MS.gene99127 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene054643 | MS.gene99127 | 0.82974 | 4.35E-55 | -1.69E-46 |
| MS.gene055251 | MS.gene99127 | 0.877925 | 4.25E-69 | -1.69E-46 |
| MS.gene056041 | MS.gene99127 | 0.836314 | 1.01E-56 | -1.69E-46 |
| MS.gene056266 | MS.gene99127 | -0.873779 | 1.13E-67 | -1.69E-46 |
| MS.gene056526 | MS.gene99127 | 0.84368 | 1.21E-58 | -1.69E-46 |
| MS.gene056694 | MS.gene99127 | 0.81895 | 1.50E-52 | -1.69E-46 |
| MS.gene057367 | MS.gene99127 | 0.808319 | 3.28E-50 | -1.69E-46 |
| MS.gene057483 | MS.gene99127 | 0.817548 | 3.11E-52 | -1.69E-46 |
| MS.gene057607 | MS.gene99127 | 0.818604 | 1.80E-52 | -1.69E-46 |
| MS.gene058015 | MS.gene99127 | 0.811815 | 5.80E-51 | -1.69E-46 |
| MS.gene058382 | MS.gene99127 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene99127 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene060076 | MS.gene99127 | 0.816088 | 6.62E-52 | -1.69E-46 |
| MS.gene060473 | MS.gene99127 | 0.829271 | 5.65E-55 | -1.69E-46 |
| MS.gene060494 | MS.gene99127 | 0.802068 | 6.69E-49 | -1.69E-46 |
| MS.gene060565 | MS.gene99127 | 0.828093 | 1.09E-54 | -1.69E-46 |
| MS.gene06057 | MS.gene99127 | 0.837205 | 5.96E-57 | -1.69E-46 |
| MS.gene06093 | MS.gene99127 | 0.834904 | 2.29E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene99127 | 0.870286 | 1.64E-66 | -1.69E-46 |
| MS.gene061260 | MS.gene99127 | 0.835348 | 1.77E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015453 | MS.gene99127 | PPI |
| MS.gene63578 | MS.gene99127 | PPI |
| MS.gene99127 | MS.gene025792 | PPI |
| MS.gene99127 | MS.gene76883 | PPI |
| MS.gene99127 | MS.gene21150 | PPI |
| MS.gene99127 | MS.gene09953 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99127.t1 | MTR_3g437580 | 95.614 | 456 | 18 | 1 | 1 | 454 | 1 | 456 | 0.0 | 910 |
| MS.gene99127.t1 | MTR_3g437580 | 94.461 | 343 | 17 | 1 | 1 | 341 | 1 | 343 | 0.0 | 679 |
| MS.gene99127.t1 | MTR_5g012130 | 48.322 | 447 | 202 | 10 | 9 | 441 | 11 | 442 | 4.07e-139 | 407 |
| MS.gene99127.t1 | MTR_8g037880 | 43.371 | 445 | 225 | 10 | 11 | 444 | 4 | 432 | 1.86e-117 | 351 |
| MS.gene99127.t1 | MTR_8g037910 | 42.227 | 431 | 228 | 8 | 11 | 435 | 4 | 419 | 2.47e-115 | 345 |
| MS.gene99127.t1 | MTR_5g012130 | 50.898 | 334 | 144 | 8 | 9 | 337 | 31 | 349 | 1.53e-105 | 317 |
| MS.gene99127.t1 | MTR_8g037910 | 43.161 | 329 | 171 | 6 | 11 | 338 | 4 | 317 | 1.01e-90 | 278 |
| MS.gene99127.t1 | MTR_5g012130 | 48.855 | 262 | 114 | 8 | 9 | 265 | 31 | 277 | 9.53e-71 | 226 |
| MS.gene99127.t1 | MTR_8g037910 | 41.197 | 284 | 151 | 6 | 11 | 293 | 4 | 272 | 1.54e-69 | 222 |
| MS.gene99127.t1 | MTR_3g109520 | 25.688 | 218 | 125 | 6 | 13 | 228 | 41 | 223 | 6.65e-16 | 79.7 |
| MS.gene99127.t1 | MTR_7g107710 | 25.214 | 234 | 137 | 5 | 11 | 241 | 6 | 204 | 1.73e-15 | 78.2 |
| MS.gene99127.t1 | MTR_7g107690 | 25.506 | 247 | 137 | 6 | 7 | 242 | 4 | 214 | 1.08e-14 | 75.9 |
| MS.gene99127.t1 | MTR_2g450510 | 25.287 | 261 | 146 | 7 | 9 | 245 | 3 | 238 | 5.41e-14 | 74.3 |
| MS.gene99127.t1 | MTR_6g086870 | 24.658 | 219 | 129 | 8 | 13 | 228 | 22 | 207 | 7.89e-13 | 70.5 |
| MS.gene99127.t1 | MTR_2g043850 | 27.317 | 205 | 106 | 7 | 11 | 198 | 14 | 192 | 8.56e-13 | 70.5 |
| MS.gene99127.t1 | MTR_1g008380 | 24.796 | 367 | 169 | 14 | 13 | 310 | 44 | 372 | 1.34e-12 | 69.7 |
| MS.gene99127.t1 | MTR_3g088925 | 21.387 | 346 | 179 | 6 | 11 | 296 | 7 | 319 | 1.64e-12 | 69.3 |
| MS.gene99127.t1 | MTR_2g450310 | 26.087 | 253 | 136 | 10 | 9 | 236 | 3 | 229 | 2.22e-12 | 69.3 |
| MS.gene99127.t1 | MTR_1g011630 | 21.834 | 229 | 142 | 6 | 13 | 241 | 18 | 209 | 4.49e-12 | 67.8 |
| MS.gene99127.t1 | MTR_1g046230 | 21.023 | 352 | 179 | 10 | 13 | 298 | 26 | 344 | 6.30e-12 | 67.8 |
| MS.gene99127.t1 | MTR_3g088945 | 21.098 | 346 | 180 | 6 | 11 | 296 | 7 | 319 | 9.38e-12 | 67.0 |
| MS.gene99127.t1 | MTR_2g020630 | 27.500 | 240 | 125 | 9 | 11 | 227 | 14 | 227 | 2.82e-11 | 65.9 |
| MS.gene99127.t1 | MTR_1088s0010 | 29.771 | 131 | 64 | 3 | 9 | 136 | 3 | 108 | 2.82e-11 | 62.0 |
| MS.gene99127.t1 | MTR_2g044140 | 27.805 | 205 | 105 | 7 | 11 | 198 | 14 | 192 | 6.26e-11 | 64.7 |
| MS.gene99127.t1 | MTR_7g099330 | 23.611 | 216 | 126 | 5 | 13 | 228 | 26 | 202 | 7.67e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99127.t1 | AT5G61290 | 68.293 | 451 | 136 | 5 | 6 | 452 | 11 | 458 | 0.0 | 648 |
| MS.gene99127.t1 | AT5G07800 | 67.105 | 456 | 131 | 6 | 6 | 450 | 11 | 458 | 0.0 | 641 |
| MS.gene99127.t1 | AT1G62620 | 46.205 | 448 | 220 | 9 | 6 | 443 | 8 | 444 | 4.03e-135 | 397 |
| MS.gene99127.t1 | AT1G63370 | 46.413 | 446 | 222 | 9 | 6 | 443 | 8 | 444 | 1.45e-134 | 395 |
| MS.gene99127.t1 | AT1G62560 | 45.133 | 452 | 225 | 9 | 1 | 441 | 1 | 440 | 7.89e-130 | 384 |
| MS.gene99127.t1 | AT1G65860 | 45.393 | 445 | 221 | 8 | 8 | 443 | 10 | 441 | 2.39e-128 | 380 |
| MS.gene99127.t1 | AT1G12200 | 47.098 | 448 | 218 | 10 | 4 | 441 | 7 | 445 | 1.50e-125 | 373 |
| MS.gene99127.t1 | AT1G62620 | 47.583 | 393 | 187 | 8 | 6 | 390 | 8 | 389 | 1.31e-121 | 360 |
| MS.gene99127.t1 | AT1G12140 | 45.638 | 447 | 219 | 9 | 7 | 443 | 9 | 441 | 1.48e-121 | 362 |
| MS.gene99127.t1 | AT1G12140 | 45.638 | 447 | 219 | 9 | 7 | 443 | 9 | 441 | 1.48e-121 | 362 |
| MS.gene99127.t1 | AT1G62560 | 46.324 | 408 | 198 | 8 | 1 | 399 | 1 | 396 | 2.23e-121 | 360 |
| MS.gene99127.t1 | AT1G12160 | 42.549 | 463 | 229 | 7 | 5 | 443 | 6 | 455 | 4.16e-121 | 361 |
| MS.gene99127.t1 | AT1G62600 | 45.011 | 451 | 221 | 10 | 7 | 443 | 9 | 446 | 1.97e-120 | 359 |
| MS.gene99127.t1 | AT1G12140 | 45.414 | 447 | 218 | 10 | 7 | 443 | 9 | 439 | 1.33e-118 | 355 |
| MS.gene99127.t1 | AT1G62540 | 45.393 | 445 | 221 | 8 | 8 | 443 | 10 | 441 | 6.59e-118 | 353 |
| MS.gene99127.t1 | AT1G62570 | 44.396 | 455 | 229 | 9 | 7 | 452 | 9 | 448 | 1.12e-116 | 350 |
| MS.gene99127.t1 | AT1G62540 | 43.617 | 470 | 218 | 10 | 8 | 443 | 10 | 466 | 4.40e-114 | 344 |
| MS.gene99127.t1 | AT1G62580 | 46.358 | 453 | 219 | 11 | 2 | 443 | 5 | 444 | 8.77e-114 | 342 |
| MS.gene99127.t1 | AT1G12130 | 42.765 | 463 | 223 | 9 | 8 | 443 | 10 | 457 | 2.65e-112 | 339 |
| MS.gene99127.t1 | AT1G62600 | 46.835 | 395 | 185 | 9 | 7 | 389 | 9 | 390 | 5.17e-109 | 328 |
| MS.gene99127.t1 | AT1G63340 | 44.619 | 446 | 197 | 12 | 2 | 443 | 5 | 404 | 2.70e-108 | 327 |
| MS.gene99127.t1 | AT1G62540 | 43.371 | 445 | 212 | 9 | 8 | 443 | 10 | 423 | 8.79e-106 | 321 |
| MS.gene99127.t1 | AT1G62580 | 43.416 | 486 | 218 | 14 | 2 | 443 | 5 | 477 | 3.13e-105 | 322 |
| MS.gene99127.t1 | AT1G63370 | 46.450 | 338 | 165 | 7 | 6 | 338 | 8 | 334 | 4.45e-102 | 308 |
| MS.gene99127.t1 | AT1G12200 | 50.296 | 338 | 149 | 9 | 8 | 338 | 11 | 336 | 1.69e-97 | 298 |
| MS.gene99127.t1 | AT1G62580 | 50.000 | 350 | 147 | 10 | 2 | 335 | 5 | 342 | 1.75e-88 | 274 |
| MS.gene99127.t1 | AT1G63390 | 49.375 | 160 | 70 | 5 | 7 | 161 | 9 | 162 | 1.30e-32 | 122 |
| MS.gene99127.t1 | AT5G45180 | 25.361 | 485 | 244 | 19 | 6 | 405 | 8 | 459 | 6.93e-22 | 98.2 |
| MS.gene99127.t1 | AT1G19250 | 28.926 | 242 | 125 | 8 | 8 | 227 | 10 | 226 | 5.45e-16 | 80.5 |
| MS.gene99127.t1 | AT4G13260 | 24.537 | 216 | 130 | 5 | 13 | 228 | 30 | 212 | 1.59e-12 | 68.6 |
| MS.gene99127.t1 | AT4G13260 | 24.537 | 216 | 130 | 5 | 13 | 228 | 30 | 212 | 3.40e-12 | 68.6 |
| MS.gene99127.t1 | AT2G33230 | 23.502 | 217 | 134 | 6 | 13 | 228 | 34 | 219 | 1.64e-11 | 66.2 |
| MS.gene99127.t1 | AT5G25620 | 23.846 | 260 | 152 | 8 | 13 | 261 | 34 | 258 | 4.13e-11 | 65.1 |
| MS.gene99127.t1 | AT5G25620 | 23.846 | 260 | 152 | 8 | 13 | 261 | 34 | 258 | 4.71e-11 | 65.1 |
| MS.gene99127.t1 | AT4G32540 | 25.000 | 248 | 137 | 8 | 3 | 241 | 7 | 214 | 5.20e-11 | 64.7 |
| MS.gene99127.t1 | AT4G32540 | 25.000 | 248 | 137 | 8 | 3 | 241 | 7 | 214 | 5.28e-11 | 64.7 |
Find 117 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAATGGATGGCAATTT+TGG | 0.152109 | 3.4:-28940043 | None:intergenic |
| GAAAATCATGTCACCTTTAA+TGG | 0.155585 | 3.4:-28940056 | None:intergenic |
| TGGATAGCTCAATTGCTTTC+TGG | 0.169069 | 3.4:+28943339 | MS.gene99127:CDS |
| CCTCATGTCTCTACCTTTCT+TGG | 0.191684 | 3.4:-28939786 | None:intergenic |
| CCAAAATTGCCATCCATTAA+AGG | 0.193960 | 3.4:+28940043 | MS.gene99127:CDS |
| CTACCTTTCTTGGTAGAAAA+TGG | 0.198982 | 3.4:-28939776 | None:intergenic |
| GTTAACAATGGAGTTAATTA+TGG | 0.259199 | 3.4:-28944682 | None:intergenic |
| GAAAAGAGTTTCTACCTAAA+GGG | 0.316983 | 3.4:-28939679 | None:intergenic |
| GGCATTCCTACTCATGATAT+TGG | 0.332854 | 3.4:+28943435 | MS.gene99127:CDS |
| ACCTCATTGTGGAATGGTTC+TGG | 0.335360 | 3.4:-28940452 | None:intergenic |
| GGATAGCTCAATTGCTTTCT+GGG | 0.344271 | 3.4:+28943340 | MS.gene99127:CDS |
| TTCTATAACCACCATTCCTT+TGG | 0.367024 | 3.4:-28942710 | None:intergenic |
| CTAGTTCTATTGCTATATCT+TGG | 0.369423 | 3.4:-28940834 | None:intergenic |
| TTATCTCTCTTGCTGCTACT+AGG | 0.370276 | 3.4:-28939565 | None:intergenic |
| TGCCTGCTACTTCTCTTTCA+TGG | 0.373660 | 3.4:-28943416 | None:intergenic |
| AAATGCATAGTCACATTTAC+AGG | 0.376176 | 3.4:+28940426 | MS.gene99127:CDS |
| AGAAAAGAGTTTCTACCTAA+AGG | 0.378578 | 3.4:-28939680 | None:intergenic |
| CTTGATGATTATCGTGTTTG+TGG | 0.386916 | 3.4:+28939917 | MS.gene99127:CDS |
| AATTAACTCCATTGTTAACT+TGG | 0.387019 | 3.4:+28944686 | MS.gene99127:CDS |
| TTGTGATAAGGTTGTGGAAG+AGG | 0.392803 | 3.4:+28939979 | MS.gene99127:CDS |
| ATTCCTTTGGTGTCAAGAAA+AGG | 0.410339 | 3.4:-28942697 | None:intergenic |
| AGATGATAAGGTTCAATACT+AGG | 0.413544 | 3.4:+28939876 | MS.gene99127:CDS |
| GACTCTATTGTGTATTGTAC+AGG | 0.418054 | 3.4:+28942101 | MS.gene99127:CDS |
| TTACCCTTCCATCCTCTTCA+AGG | 0.418369 | 3.4:-28942049 | None:intergenic |
| TTGCAGTATTGTGACAAATA+TGG | 0.418374 | 3.4:+28944603 | MS.gene99127:intron |
| AATACTAGGGTTAATTATGT+TGG | 0.420112 | 3.4:+28939890 | MS.gene99127:CDS |
| TTGGGTTAAGAGAGATGATA+AGG | 0.423127 | 3.4:+28939864 | MS.gene99127:CDS |
| TTCTCCATTCTTGTAATGGT+GGG | 0.427729 | 3.4:-28944641 | None:intergenic |
| ATTGAGCTATCCACATTGCT+TGG | 0.438044 | 3.4:-28943329 | None:intergenic |
| AAGGACTTTGAAGGGCCTCT+TGG | 0.444012 | 3.4:-28944746 | None:intergenic |
| TGCTATATCTTGGCCACTAT+AGG | 0.444873 | 3.4:-28940824 | None:intergenic |
| ATAGAAGGTGAAGACCCTTT+AGG | 0.453442 | 3.4:+28939665 | MS.gene99127:CDS |
| TAAGAGATGGAGAAAGTAAA+GGG | 0.454093 | 3.4:-28942771 | None:intergenic |
| AGTCCTTACTTCACTCAACT+TGG | 0.454993 | 3.4:+28944762 | MS.gene99127:CDS |
| GTGAACCCCATGACTTCTCT+TGG | 0.457699 | 3.4:-28939746 | None:intergenic |
| GATGCAGTGGTTGTTGCCAC+TGG | 0.458878 | 3.4:+28940007 | MS.gene99127:CDS |
| GTAAGAGATGGAGAAAGTAA+AGG | 0.463625 | 3.4:-28942772 | None:intergenic |
| TTTCTCCATTCTTGTAATGG+TGG | 0.463654 | 3.4:-28944642 | None:intergenic |
| TTCCTTTGGTGTCAAGAAAA+GGG | 0.465946 | 3.4:-28942696 | None:intergenic |
| TTGAGCTATCCACATTGCTT+GGG | 0.470765 | 3.4:-28943328 | None:intergenic |
| ATAAGTATTTCAACATGGCC+AGG | 0.471295 | 3.4:-28939815 | None:intergenic |
| TGGAAAGTGTGCTCATACAA+AGG | 0.471300 | 3.4:-28942748 | None:intergenic |
| CTTGCTGCTACTAGGCCTGC+TGG | 0.473674 | 3.4:-28939557 | None:intergenic |
| TCGAAGAATGTGTGTGTAAT+CGG | 0.476098 | 3.4:+28939527 | MS.gene99127:CDS |
| CAAAGAGAAGGATTGTGATA+AGG | 0.477585 | 3.4:+28939967 | MS.gene99127:CDS |
| TTCATCATTTCCTCCCATGA+TGG | 0.480463 | 3.4:-28943375 | None:intergenic |
| TATATAACAGGTTGTGGTGG+TGG | 0.481545 | 3.4:+28940792 | MS.gene99127:intron |
| GAAGGATTGTGATAAGGTTG+TGG | 0.494699 | 3.4:+28939973 | MS.gene99127:CDS |
| GTAATCGGTGCTGGACCAGC+AGG | 0.501353 | 3.4:+28939542 | MS.gene99127:CDS |
| GAGTGAAGTAAGGACTTTGA+AGG | 0.503755 | 3.4:-28944755 | None:intergenic |
| GCAAGAGAGATAAGAAAAGA+AGG | 0.509739 | 3.4:+28939575 | MS.gene99127:CDS |
| GACTCCCACCATTACAAGAA+TGG | 0.510699 | 3.4:+28944637 | MS.gene99127:CDS |
| TTACACACACATTCTTCGAT+TGG | 0.520487 | 3.4:-28939523 | None:intergenic |
| ATTGCTTGGGACTCAAAGAA+AGG | 0.521937 | 3.4:-28943315 | None:intergenic |
| AGTCCAAGTTGAGTGAAGTA+AGG | 0.523677 | 3.4:-28944765 | None:intergenic |
| ACAATCTCCAAGAGAAGTCA+TGG | 0.524334 | 3.4:+28939739 | MS.gene99127:CDS |
| AATGTGTGTGTAATCGGTGC+TGG | 0.528554 | 3.4:+28939533 | MS.gene99127:CDS |
| AGAGACATGAGGAGGTTCCC+TGG | 0.530130 | 3.4:+28939797 | MS.gene99127:CDS |
| GTCAAGAAAAGGGAAGCTAT+AGG | 0.535288 | 3.4:-28942686 | None:intergenic |
| TTGCTTGGGACTCAAAGAAA+GGG | 0.544898 | 3.4:-28943314 | None:intergenic |
| TACCTGTGGATGAAGGTGTA+AGG | 0.545448 | 3.4:-28940944 | None:intergenic |
| GGTTGTTAGAAGCAAAGAGA+AGG | 0.547672 | 3.4:+28939955 | MS.gene99127:CDS |
| GATGATAAGGTTCAATACTA+GGG | 0.548336 | 3.4:+28939877 | MS.gene99127:CDS |
| CGCCCTTGAAGAGGATGGAA+GGG | 0.549203 | 3.4:+28942046 | MS.gene99127:CDS |
| GTGGTTGGAAATTCCTATAG+TGG | 0.553536 | 3.4:+28940811 | MS.gene99127:CDS |
| ATCATGTCACCTTTAATGGA+TGG | 0.556571 | 3.4:-28940052 | None:intergenic |
| TTGTGGAAATAATTTGAAGT+GGG | 0.558306 | 3.4:+28939934 | MS.gene99127:CDS |
| TTATCAATACCTGTGGATGA+AGG | 0.559071 | 3.4:-28940951 | None:intergenic |
| AGATATAGCAATAGAACTAG+TGG | 0.561789 | 3.4:+28940837 | MS.gene99127:CDS |
| TACCCTTCCATCCTCTTCAA+GGG | 0.564528 | 3.4:-28942048 | None:intergenic |
| ATCTCTTGATACTATAACTG+AGG | 0.565528 | 3.4:+28940891 | MS.gene99127:CDS |
| TGGAGACATATCGAGACTCA+TGG | 0.565705 | 3.4:+28944706 | MS.gene99127:CDS |
| ATTCTTCGATTGGTTCGTCT+CGG | 0.568258 | 3.4:-28939513 | None:intergenic |
| TAACAGGTTGTGGTGGTGGT+TGG | 0.569616 | 3.4:+28940796 | MS.gene99127:intron |
| ATTTATATAACAGGTTGTGG+TGG | 0.571818 | 3.4:+28940789 | MS.gene99127:intron |
| ATGCCTATAAAAGTAAGAGA+TGG | 0.574083 | 3.4:-28942784 | None:intergenic |
| GTTATAGAAGATGACAGAGT+GGG | 0.574813 | 3.4:+28942724 | MS.gene99127:CDS |
| GCAGATAGACGCCCTTGAAG+AGG | 0.576782 | 3.4:+28942037 | MS.gene99127:intron |
| ATAGACGCCCTTGAAGAGGA+TGG | 0.578976 | 3.4:+28942041 | MS.gene99127:CDS |
| TACCATGAAAGAGAAGTAGC+AGG | 0.579370 | 3.4:+28943414 | MS.gene99127:CDS |
| ACGCCCTTGAAGAGGATGGA+AGG | 0.580659 | 3.4:+28942045 | MS.gene99127:CDS |
| AATGCTCAGGAATGGATACA+TGG | 0.580865 | 3.4:+28940393 | MS.gene99127:intron |
| GATATAGCAATAGAACTAGT+GGG | 0.582747 | 3.4:+28940838 | MS.gene99127:CDS |
| AAATATACCTCATTGTGGAA+TGG | 0.585498 | 3.4:-28940458 | None:intergenic |
| GACCTTACACCTTCATCCAC+AGG | 0.589301 | 3.4:+28940942 | MS.gene99127:CDS |
| TCTTGACACCAAAGGAATGG+TGG | 0.594626 | 3.4:+28942702 | MS.gene99127:CDS |
| CAATCTCCAAGAGAAGTCAT+GGG | 0.596018 | 3.4:+28939740 | MS.gene99127:CDS |
| GAACAGAATCATGACATTGG+AGG | 0.596567 | 3.4:+28939617 | MS.gene99127:CDS |
| CTAGAACAGAATCATGACAT+TGG | 0.599604 | 3.4:+28939614 | MS.gene99127:CDS |
| TTCATGGTAGAACTCCTCGA+TGG | 0.601727 | 3.4:-28943400 | None:intergenic |
| TTTGTGGAAATAATTTGAAG+TGG | 0.603574 | 3.4:+28939933 | MS.gene99127:CDS |
| AAATCTCCAATATCATGAGT+AGG | 0.603660 | 3.4:-28943441 | None:intergenic |
| GGAGACATATCGAGACTCAT+GGG | 0.605682 | 3.4:+28944707 | MS.gene99127:CDS |
| TAAGTATTTCAACATGGCCA+GGG | 0.607233 | 3.4:-28939814 | None:intergenic |
| AGAACTAGTGGGAATAGCAA+AGG | 0.607437 | 3.4:+28940849 | MS.gene99127:CDS |
| TCTCTTGATACTATAACTGA+GGG | 0.608259 | 3.4:+28940892 | MS.gene99127:CDS |
| AAAAGTATTGCCATCATGGG+AGG | 0.610259 | 3.4:+28943365 | MS.gene99127:CDS |
| TTGGTTCGTCTCGGAAACCA+TGG | 0.616433 | 3.4:-28939504 | None:intergenic |
| GAGATGGAGAAAGTAAAGGG+TGG | 0.617386 | 3.4:-28942768 | None:intergenic |
| AGTGAAGTAAGGACTTTGAA+GGG | 0.617403 | 3.4:-28944754 | None:intergenic |
| TGGTTGAGCGTAATGACCAG+TGG | 0.620721 | 3.4:-28940023 | None:intergenic |
| ATATGTCTCCAAGTTAACAA+TGG | 0.636025 | 3.4:-28944694 | None:intergenic |
| GACAAATATGGTGAGAATGT+AGG | 0.639510 | 3.4:+28944615 | MS.gene99127:CDS |
| CCAAGAAAGGTAGAGACATG+AGG | 0.642980 | 3.4:+28939786 | MS.gene99127:CDS |
| AGACTCATGGGATGATGATG+AGG | 0.660730 | 3.4:+28944719 | MS.gene99127:CDS |
| GATACATAAGTATTTCAACA+TGG | 0.661901 | 3.4:-28939820 | None:intergenic |
| ATAGCAAATATACCTCATTG+TGG | 0.662065 | 3.4:-28940463 | None:intergenic |
| TCCAGAACCATTCCACAATG+AGG | 0.662680 | 3.4:+28940451 | MS.gene99127:CDS |
| ACTCTATTGTGTATTGTACA+GGG | 0.671646 | 3.4:+28942102 | MS.gene99127:CDS |
| TCTTTGAGTCCCAAGCAATG+TGG | 0.679786 | 3.4:+28943319 | MS.gene99127:CDS |
| GGTTATAGAAGATGACAGAG+TGG | 0.685485 | 3.4:+28942723 | MS.gene99127:CDS |
| TGATGATGAGGTGCTCCAAG+AGG | 0.686965 | 3.4:+28944731 | MS.gene99127:CDS |
| AGAAAGGTAGAGACATGAGG+AGG | 0.707282 | 3.4:+28939789 | MS.gene99127:CDS |
| ATCATGACATTGGAGGACAA+TGG | 0.715553 | 3.4:+28939624 | MS.gene99127:CDS |
| TTATAGAAGATGACAGAGTG+GGG | 0.721299 | 3.4:+28942725 | MS.gene99127:CDS |
| AATCTCCAAGAGAAGTCATG+GGG | 0.726188 | 3.4:+28939741 | MS.gene99127:CDS |
| GGAAATGATGAAATCCATCG+AGG | 0.746562 | 3.4:+28943386 | MS.gene99127:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATATA+GGG | + | chr3.4:28942432-28942451 | MS.gene99127:intron | 10.0% |
| !! | ATGATATTTGAATAATAATT+TGG | + | chr3.4:28941830-28941849 | MS.gene99127:intron | 10.0% |
| !! | ATTATTAATTAGAGTTATAA+AGG | + | chr3.4:28942491-28942510 | MS.gene99127:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAT+AGG | + | chr3.4:28942431-28942450 | MS.gene99127:intron | 10.0% |
| !! | TGATATTTGAATAATAATTT+GGG | + | chr3.4:28941831-28941850 | MS.gene99127:intron | 10.0% |
| !! | TTATTAATTAGAGTTATAAA+GGG | + | chr3.4:28942492-28942511 | MS.gene99127:intron | 10.0% |
| !!! | TAAGAAAATATATTTTTCTA+TGG | - | chr3.4:28943736-28943755 | None:intergenic | 10.0% |
| !!! | TTTTATTAAATAAAGTAGTT+GGG | + | chr3.4:28941696-28941715 | MS.gene99127:intron | 10.0% |
| !! | AAAATTCTTAAAATGTCATA+AGG | + | chr3.4:28943823-28943842 | MS.gene99127:intron | 15.0% |
| !! | AAATTCTTAAAATGTCATAA+GGG | + | chr3.4:28943824-28943843 | MS.gene99127:intron | 15.0% |
| !! | AATATAATATCATACGAAAA+TGG | + | chr3.4:28944278-28944297 | MS.gene99127:intron | 15.0% |
| !! | AATTAAACAAATTTGAATTG+AGG | + | chr3.4:28941511-28941530 | MS.gene99127:intron | 15.0% |
| !! | AATTATAGAGTATACTAATA+CGG | + | chr3.4:28941090-28941109 | MS.gene99127:intron | 15.0% |
| !! | ACACTTCTAATTAAAAATAT+GGG | + | chr3.4:28942927-28942946 | MS.gene99127:intron | 15.0% |
| !! | AGAAAAATGTATAAATATAG+GGG | + | chr3.4:28942433-28942452 | MS.gene99127:intron | 15.0% |
| !! | AGAACTATTAAAATTAAGTA+AGG | + | chr3.4:28941579-28941598 | MS.gene99127:intron | 15.0% |
| !! | ATAATTATATATTAATGCTC+AGG | + | chr3.4:28940380-28940399 | MS.gene99127:intron | 15.0% |
| !! | CAATTGAAAAATTAGTTATA+AGG | + | chr3.4:28942836-28942855 | MS.gene99127:intron | 15.0% |
| !! | GTAAAAAAAAAACAAAATCT+TGG | + | chr3.4:28943468-28943487 | MS.gene99127:intron | 15.0% |
| !! | GTGCATATTATAAAATTTAA+TGG | - | chr3.4:28943528-28943547 | None:intergenic | 15.0% |
| !! | TATGATGATAAAAATATAGA+AGG | + | chr3.4:28939650-28939669 | MS.gene99127:CDS | 15.0% |
| !! | TATTAATTAGAGTTATAAAG+GGG | + | chr3.4:28942493-28942512 | MS.gene99127:intron | 15.0% |
| !! | TCATCTAAAAATACTTATTT+GGG | + | chr3.4:28943991-28944010 | MS.gene99127:intron | 15.0% |
| !! | TCTATAATACATGTAAATAA+TGG | + | chr3.4:28940697-28940716 | MS.gene99127:intron | 15.0% |
| !! | TGACAATAAAAAACTATTAA+TGG | - | chr3.4:28943853-28943872 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+GGG | - | chr3.4:28941254-28941273 | None:intergenic | 15.0% |
| !! | TTCATCTAAAAATACTTATT+TGG | + | chr3.4:28943990-28944009 | MS.gene99127:intron | 15.0% |
| !!! | ATACAAGACTTTTATTTATA+TGG | + | chr3.4:28940233-28940252 | MS.gene99127:intron | 15.0% |
| !!! | ATTTTCTCATAATAAGTAAA+GGG | + | chr3.4:28940298-28940317 | MS.gene99127:intron | 15.0% |
| !!! | CTTTTATTAAATAAAGTAGT+TGG | + | chr3.4:28941695-28941714 | MS.gene99127:intron | 15.0% |
| !!! | TAGAAGTAATTTTTTTTGTA+GGG | - | chr3.4:28941194-28941213 | None:intergenic | 15.0% |
| !!! | TTAGAAGTAATTTTTTTTGT+AGG | - | chr3.4:28941195-28941214 | None:intergenic | 15.0% |
| !!! | TTTTTAACAAAACAATATCT+TGG | + | chr3.4:28943499-28943518 | MS.gene99127:intron | 15.0% |
| !! | AAAAGTGGAATATATTGAAT+TGG | + | chr3.4:28942517-28942536 | MS.gene99127:intron | 20.0% |
| !! | AAACCTATGAAAATTAAGTA+AGG | - | chr3.4:28941165-28941184 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr3.4:28942456-28942475 | MS.gene99127:intron | 20.0% |
| !! | AATTATCTGATTGTAATATG+AGG | + | chr3.4:28944417-28944436 | MS.gene99127:intron | 20.0% |
| !! | ACATTATATGAGTATTTGAA+AGG | + | chr3.4:28941921-28941940 | MS.gene99127:intron | 20.0% |
| !! | AGAGATATAATTGTGATATA+TGG | - | chr3.4:28940580-28940599 | None:intergenic | 20.0% |
| !! | ATACGAAAATGGTATTATTT+GGG | + | chr3.4:28944289-28944308 | MS.gene99127:intron | 20.0% |
| !! | ATTATAATTATCAATACCTG+TGG | - | chr3.4:28940961-28940980 | None:intergenic | 20.0% |
| !! | ATTATAGAGTATACTAATAC+GGG | + | chr3.4:28941091-28941110 | MS.gene99127:intron | 20.0% |
| !! | ATTATATTAAGTGTGGTTTA+AGG | + | chr3.4:28941044-28941063 | MS.gene99127:intron | 20.0% |
| !! | ATTGAGATAAATAATGCATA+AGG | + | chr3.4:28941722-28941741 | MS.gene99127:intron | 20.0% |
| !! | CATCTAAAAATACTTATTTG+GGG | + | chr3.4:28943992-28944011 | MS.gene99127:intron | 20.0% |
| !! | GAAAAAAATATACAAAGACT+TGG | - | chr3.4:28940259-28940278 | None:intergenic | 20.0% |
| !! | GACACTTCTAATTAAAAATA+TGG | + | chr3.4:28942926-28942945 | MS.gene99127:intron | 20.0% |
| !! | GTTCAAAAATTTAAGAGTTT+AGG | - | chr3.4:28941255-28941274 | None:intergenic | 20.0% |
| !! | TATATAGTAACGTGTTATAT+TGG | + | chr3.4:28942006-28942025 | MS.gene99127:intron | 20.0% |
| !! | TCATTTATGGAAAAATGAAA+AGG | + | chr3.4:28944540-28944559 | MS.gene99127:intron | 20.0% |
| !! | TGAATATGATATAAAGAAAC+AGG | + | chr3.4:28940127-28940146 | MS.gene99127:intron | 20.0% |
| !! | TTTATTTATATAACAGGTTG+TGG | + | chr3.4:28940786-28940805 | MS.gene99127:intron | 20.0% |
| !! | TTTGGTCACAAAAAAAAAAA+AGG | + | chr3.4:28942173-28942192 | MS.gene99127:intron | 20.0% |
| !! | TTTGTTAGATTTCAACTAAT+GGG | + | chr3.4:28943640-28943659 | MS.gene99127:intron | 20.0% |
| !!! | AATACATGTAAATAATGGAA+GGG | + | chr3.4:28940702-28940721 | MS.gene99127:intron | 20.0% |
| !!! | ACATTTGATATACATACTTT+TGG | - | chr3.4:28943253-28943272 | None:intergenic | 20.0% |
| !!! | AGAGAATGAACAATTTTAAA+AGG | - | chr3.4:28944066-28944085 | None:intergenic | 20.0% |
| !!! | ATCTAAAAGATTTTTGTGAA+TGG | + | chr3.4:28939840-28939859 | MS.gene99127:CDS | 20.0% |
| !!! | ATTTGTTAGATTTCAACTAA+TGG | + | chr3.4:28943639-28943658 | MS.gene99127:intron | 20.0% |
| !!! | ATTTTTCAATTGCTGATTTT+AGG | - | chr3.4:28942828-28942847 | None:intergenic | 20.0% |
| !!! | CATTTTCTCATAATAAGTAA+AGG | + | chr3.4:28940297-28940316 | MS.gene99127:intron | 20.0% |
| !!! | GAGAATGAACAATTTTAAAA+GGG | - | chr3.4:28944065-28944084 | None:intergenic | 20.0% |
| !!! | TAATACATGTAAATAATGGA+AGG | + | chr3.4:28940701-28940720 | MS.gene99127:intron | 20.0% |
| !!! | TGTTTTTGAAATTCATCAAT+TGG | + | chr3.4:28942647-28942666 | MS.gene99127:intron | 20.0% |
| !!! | TTAGGTTAATTACCTTTTTA+GGG | - | chr3.4:28942810-28942829 | None:intergenic | 20.0% |
| !!! | TTCATTTTTCCATAAATGAA+TGG | - | chr3.4:28944539-28944558 | None:intergenic | 20.0% |
| !!! | TTTAGGTTAATTACCTTTTT+AGG | - | chr3.4:28942811-28942830 | None:intergenic | 20.0% |
| ! | AAAAGATTCAAAACAAATCG+AGG | - | chr3.4:28943913-28943932 | None:intergenic | 25.0% |
| ! | AAACAAATTTGAATTGAGGA+GGG | + | chr3.4:28941515-28941534 | MS.gene99127:intron | 25.0% |
| ! | AAAGATTCAAAACAAATCGA+GGG | - | chr3.4:28943912-28943931 | None:intergenic | 25.0% |
| ! | AAATATCATCTCTCTTTAAC+AGG | + | chr3.4:28941978-28941997 | MS.gene99127:intron | 25.0% |
| ! | AAATCCCACTAATTTGAAAA+GGG | - | chr3.4:28943623-28943642 | None:intergenic | 25.0% |
| ! | AAGTAAGGACTAAACTTAAA+AGG | + | chr3.4:28941594-28941613 | MS.gene99127:intron | 25.0% |
| ! | AATAAGTGTGAAATGAATCA+AGG | - | chr3.4:28942412-28942431 | None:intergenic | 25.0% |
| ! | AATACTAGGGTTAATTATGT+TGG | + | chr3.4:28939890-28939909 | MS.gene99127:CDS | 25.0% |
| ! | AATATCATCTCTCTTTAACA+GGG | + | chr3.4:28941979-28941998 | MS.gene99127:intron | 25.0% |
| ! | AATTAACTCCATTGTTAACT+TGG | + | chr3.4:28944686-28944705 | MS.gene99127:CDS | 25.0% |
| ! | AGGACTAAAGAAATAGTATT+TGG | + | chr3.4:28942155-28942174 | MS.gene99127:intron | 25.0% |
| ! | ATAAGTGTGAAATGAATCAA+GGG | - | chr3.4:28942411-28942430 | None:intergenic | 25.0% |
| ! | ATATAAAGAAACAGGAAGAA+AGG | + | chr3.4:28940135-28940154 | MS.gene99127:intron | 25.0% |
| ! | ATTTACATGTATTATAGAGC+AGG | - | chr3.4:28940695-28940714 | None:intergenic | 25.0% |
| ! | CATAACTACTTTACTCTAAA+AGG | - | chr3.4:28942356-28942375 | None:intergenic | 25.0% |
| ! | CATACGAAAATGGTATTATT+TGG | + | chr3.4:28944288-28944307 | MS.gene99127:intron | 25.0% |
| ! | CTTCATACCGAATATATAAA+TGG | + | chr3.4:28942874-28942893 | MS.gene99127:intron | 25.0% |
| ! | GAATGAGAAATTCAAGATAT+TGG | - | chr3.4:28940086-28940105 | None:intergenic | 25.0% |
| ! | GATACATAAGTATTTCAACA+TGG | - | chr3.4:28939823-28939842 | None:intergenic | 25.0% |
| ! | GCAGAAGAAAAAAAACTTAA+GGG | + | chr3.4:28941551-28941570 | MS.gene99127:intron | 25.0% |
| ! | GTCATAGAGAAATTCTAATA+TGG | + | chr3.4:28942128-28942147 | MS.gene99127:intron | 25.0% |
| ! | GTTAACAATGGAGTTAATTA+TGG | - | chr3.4:28944685-28944704 | None:intergenic | 25.0% |
| ! | TAAAAATACTTATTTGGGGA+AGG | + | chr3.4:28943996-28944015 | MS.gene99127:intron | 25.0% |
| ! | TAAACAAATTTGAATTGAGG+AGG | + | chr3.4:28941514-28941533 | MS.gene99127:intron | 25.0% |
| ! | TATATATTAATGCTCAGGAA+TGG | + | chr3.4:28940385-28940404 | MS.gene99127:intron | 25.0% |
| ! | TCAGAAGCCATTTATATATT+CGG | - | chr3.4:28942884-28942903 | None:intergenic | 25.0% |
| ! | TGCAGAAGAAAAAAAACTTA+AGG | + | chr3.4:28941550-28941569 | MS.gene99127:intron | 25.0% |
| ! | TTGTTAGATTTCAACTAATG+GGG | + | chr3.4:28943641-28943660 | MS.gene99127:intron | 25.0% |
| ! | TTTATAATGTAATACTCCAG+AGG | + | chr3.4:28940161-28940180 | MS.gene99127:intron | 25.0% |
| ! | TTTGTGGAAATAATTTGAAG+TGG | + | chr3.4:28939933-28939952 | MS.gene99127:CDS | 25.0% |
| !! | AAACAAACTTTGTTGTAACA+AGG | - | chr3.4:28941225-28941244 | None:intergenic | 25.0% |
| !! | AAAGATTTTTGTGAATGGTT+TGG | + | chr3.4:28939845-28939864 | MS.gene99127:CDS | 25.0% |
| !! | AAGATTTTTGTGAATGGTTT+GGG | + | chr3.4:28939846-28939865 | MS.gene99127:CDS | 25.0% |
| !! | AGTAGGGTTAAATATGTTTT+TGG | - | chr3.4:28941637-28941656 | None:intergenic | 25.0% |
| !! | AGTCCTTACTTAATTTTCAT+AGG | + | chr3.4:28941159-28941178 | MS.gene99127:intron | 25.0% |
| !! | TAAAAGGTCCCAATTTTATA+GGG | + | chr3.4:28941610-28941629 | MS.gene99127:intron | 25.0% |
| !! | TTAAAAGGTCCCAATTTTAT+AGG | + | chr3.4:28941609-28941628 | MS.gene99127:intron | 25.0% |
| !! | TTGTGGAAATAATTTGAAGT+GGG | + | chr3.4:28939934-28939953 | MS.gene99127:CDS | 25.0% |
| !!! | TAAAAGTTCCCAGTTTTATA+GGG | - | chr3.4:28941134-28941153 | None:intergenic | 25.0% |
| !!! | TGCATACTTTTTAGTTTCAA+TGG | + | chr3.4:28943222-28943241 | MS.gene99127:intron | 25.0% |
| !!! | TTAAAAGTTCCCAGTTTTAT+AGG | - | chr3.4:28941135-28941154 | None:intergenic | 25.0% |
| !!! | TTTATGACAATTTTTTGCAG+AGG | + | chr3.4:28941423-28941442 | MS.gene99127:intron | 25.0% |
| !!! | TTTTTGGTCCCTATAAAATT+GGG | - | chr3.4:28941621-28941640 | None:intergenic | 25.0% |
| AAATATACCTCATTGTGGAA+TGG | - | chr3.4:28940461-28940480 | None:intergenic | 30.0% | |
| AAATCTCCAATATCATGAGT+AGG | - | chr3.4:28943444-28943463 | None:intergenic | 30.0% | |
| AAATGCATAGTCACATTTAC+AGG | + | chr3.4:28940426-28940445 | MS.gene99127:CDS | 30.0% | |
| AAGATTCAAAACAAATCGAG+GGG | - | chr3.4:28943911-28943930 | None:intergenic | 30.0% | |
| AATCAAGGGCTCAATTAATT+CGG | - | chr3.4:28942397-28942416 | None:intergenic | 30.0% | |
| ACTCTATTGTGTATTGTACA+GGG | + | chr3.4:28942102-28942121 | MS.gene99127:CDS | 30.0% | |
| AGAAAAGAGTTTCTACCTAA+AGG | - | chr3.4:28939683-28939702 | None:intergenic | 30.0% | |
| AGAAATTCTAATATGGTCAC+AGG | + | chr3.4:28942135-28942154 | MS.gene99127:intron | 30.0% | |
| AGATATAGCAATAGAACTAG+TGG | + | chr3.4:28940837-28940856 | MS.gene99127:CDS | 30.0% | |
| AGATGATAAGGTTCAATACT+AGG | + | chr3.4:28939876-28939895 | MS.gene99127:CDS | 30.0% | |
| AGTAAATGACTCAGTTAATC+CGG | + | chr3.4:28942600-28942619 | MS.gene99127:intron | 30.0% | |
| ATAGCAAATATACCTCATTG+TGG | - | chr3.4:28940466-28940485 | None:intergenic | 30.0% | |
| ATATCATCTCTCTTTAACAG+GGG | + | chr3.4:28941980-28941999 | MS.gene99127:intron | 30.0% | |
| ATATGTCTCCAAGTTAACAA+TGG | - | chr3.4:28944697-28944716 | None:intergenic | 30.0% | |
| ATCTCTATAAATTATCCACG+TGG | + | chr3.4:28940623-28940642 | MS.gene99127:intron | 30.0% | |
| ATCTCTTGATACTATAACTG+AGG | + | chr3.4:28940891-28940910 | MS.gene99127:CDS | 30.0% | |
| ATGCCTATAAAAGTAAGAGA+TGG | - | chr3.4:28942787-28942806 | None:intergenic | 30.0% | |
| ATTTATATAACAGGTTGTGG+TGG | + | chr3.4:28940789-28940808 | MS.gene99127:intron | 30.0% | |
| CAAATCCCACTAATTTGAAA+AGG | - | chr3.4:28943624-28943643 | None:intergenic | 30.0% | |
| CTGTCTCATTATATTAAGTG+TGG | + | chr3.4:28941037-28941056 | MS.gene99127:intron | 30.0% | |
| GAAAAGAGTTTCTACCTAAA+GGG | - | chr3.4:28939682-28939701 | None:intergenic | 30.0% | |
| GAAAATCATGTCACCTTTAA+TGG | - | chr3.4:28940059-28940078 | None:intergenic | 30.0% | |
| GAAGCCATCTATGTATAAAT+AGG | - | chr3.4:28943550-28943569 | None:intergenic | 30.0% | |
| GAGTTTGTCATCATAATTAG+AGG | + | chr3.4:28941806-28941825 | MS.gene99127:intron | 30.0% | |
| GATATAGCAATAGAACTAGT+GGG | + | chr3.4:28940838-28940857 | MS.gene99127:CDS | 30.0% | |
| GATGATAAGGTTCAATACTA+GGG | + | chr3.4:28939877-28939896 | MS.gene99127:CDS | 30.0% | |
| GTGCATGATTGAATAAGATA+TGG | + | chr3.4:28944454-28944473 | MS.gene99127:intron | 30.0% | |
| GTTTGTATATGAGTATGAGT+AGG | + | chr3.4:28943155-28943174 | MS.gene99127:intron | 30.0% | |
| TAAGAGATGGAGAAAGTAAA+GGG | - | chr3.4:28942774-28942793 | None:intergenic | 30.0% | |
| TACACCAATAATTCTGATGT+AGG | - | chr3.4:28944494-28944513 | None:intergenic | 30.0% | |
| TAGCAAAACCCATTAACTAT+TGG | + | chr3.4:28940195-28940214 | MS.gene99127:intron | 30.0% | |
| TAGTCCTACATCAGAATTAT+TGG | + | chr3.4:28944487-28944506 | MS.gene99127:intron | 30.0% | |
| TCTCTTGATACTATAACTGA+GGG | + | chr3.4:28940892-28940911 | MS.gene99127:CDS | 30.0% | |
| TGCACCTATTTATACATAGA+TGG | + | chr3.4:28943543-28943562 | MS.gene99127:intron | 30.0% | |
| TGTATAAATATAGGGGAAAG+TGG | + | chr3.4:28942440-28942459 | MS.gene99127:intron | 30.0% | |
| TGTTAGATTTCAACTAATGG+GGG | + | chr3.4:28943642-28943661 | MS.gene99127:intron | 30.0% | |
| TGTTCATTCTCTTATCTCAA+CGG | + | chr3.4:28944074-28944093 | MS.gene99127:intron | 30.0% | |
| TTCTTGCACCAATAGTTAAT+GGG | - | chr3.4:28940206-28940225 | None:intergenic | 30.0% | |
| TTGAATAAGATATGGTCCAT+TGG | + | chr3.4:28944462-28944481 | MS.gene99127:intron | 30.0% | |
| TTGCAGTATTGTGACAAATA+TGG | + | chr3.4:28944603-28944622 | MS.gene99127:intron | 30.0% | |
| TTTCTTGCACCAATAGTTAA+TGG | - | chr3.4:28940207-28940226 | None:intergenic | 30.0% | |
| ! | ACTTTTCTCCATTCTTGTAA+TGG | - | chr3.4:28944648-28944667 | None:intergenic | 30.0% |
| ! | ATGAGTGTACTACAGATTTT+AGG | + | chr3.4:28943288-28943307 | MS.gene99127:intron | 30.0% |
| ! | ATTAAGTGTGGTTTAAGGTT+AGG | + | chr3.4:28941049-28941068 | MS.gene99127:intron | 30.0% |
| ! | TAGGTACTTGGTAGATTTTA+AGG | + | chr3.4:28943174-28943193 | MS.gene99127:intron | 30.0% |
| ! | TCATATGTGTTAGCGTTTTA+TGG | + | chr3.4:28943054-28943073 | MS.gene99127:intron | 30.0% |
| ! | TCATGATATTGGAGATTTTG+AGG | + | chr3.4:28943446-28943465 | MS.gene99127:CDS | 30.0% |
| ! | TTGTCATGTCTAACTTTTCT+AGG | + | chr3.4:28943867-28943886 | MS.gene99127:intron | 30.0% |
| ! | TTTCCATTTTCTACCAAGAA+AGG | + | chr3.4:28939773-28939792 | MS.gene99127:CDS | 30.0% |
| ! | TTTTATAGGCATCCCTAAAA+AGG | + | chr3.4:28942795-28942814 | MS.gene99127:CDS | 30.0% |
| ! | TTTTTCTCAAATAGACGTGT+CGG | + | chr3.4:28943016-28943035 | MS.gene99127:intron | 30.0% |
| !! | ATACGGGCTAAATATGTTTT+TGG | + | chr3.4:28941107-28941126 | MS.gene99127:intron | 30.0% |
| !! | CTAGTTCTATTGCTATATCT+TGG | - | chr3.4:28940837-28940856 | None:intergenic | 30.0% |
| !! | GAAAAAAGTATTGCCATCAT+GGG | + | chr3.4:28943362-28943381 | MS.gene99127:CDS | 30.0% |
| !! | TCATCAATTGGTTGTTTTGT+AGG | + | chr3.4:28942659-28942678 | MS.gene99127:intron | 30.0% |
| !! | TCTCCATCTCTTACTTTTAT+AGG | + | chr3.4:28942781-28942800 | MS.gene99127:CDS | 30.0% |
| !! | TTTTTGGTCCCTATAAAACT+GGG | + | chr3.4:28941123-28941142 | MS.gene99127:intron | 30.0% |
| !!! | GGTTTAAGCACTTTTTAAGT+CGG | - | chr3.4:28944168-28944187 | None:intergenic | 30.0% |
| !!! | GTTTAAGCACTTTTTAAGTC+GGG | - | chr3.4:28944167-28944186 | None:intergenic | 30.0% |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | - | chr3.4:28941622-28941641 | None:intergenic | 30.0% |
| AAATACTTATTTGGGGAAGG+TGG | + | chr3.4:28943999-28944018 | MS.gene99127:intron | 35.0% | |
| AGTGAAGTAAGGACTTTGAA+GGG | - | chr3.4:28944757-28944776 | None:intergenic | 35.0% | |
| AGTTAACTCACGCTGAATTA+AGG | + | chr3.4:28944239-28944258 | MS.gene99127:intron | 35.0% | |
| ATAAGTATTTCAACATGGCC+AGG | - | chr3.4:28939818-28939837 | None:intergenic | 35.0% | |
| ATCAAGGGCTCAATTAATTC+GGG | - | chr3.4:28942396-28942415 | None:intergenic | 35.0% | |
| ATCATGTCACCTTTAATGGA+TGG | - | chr3.4:28940055-28940074 | None:intergenic | 35.0% | |
| ATGGAGCGGGTAATAATTAA+AGG | + | chr3.4:28942624-28942643 | MS.gene99127:intron | 35.0% | |
| CAAAGAGAAGGATTGTGATA+AGG | + | chr3.4:28939967-28939986 | MS.gene99127:CDS | 35.0% | |
| CCAAAATTGCCATCCATTAA+AGG | + | chr3.4:28940043-28940062 | MS.gene99127:CDS | 35.0% | |
| CTACCTTTCTTGGTAGAAAA+TGG | - | chr3.4:28939779-28939798 | None:intergenic | 35.0% | |
| CTAGAACAGAATCATGACAT+TGG | + | chr3.4:28939614-28939633 | MS.gene99127:CDS | 35.0% | |
| CTATGGTTGATTGTGCTTAA+TGG | - | chr3.4:28943719-28943738 | None:intergenic | 35.0% | |
| GACAAATATGGTGAGAATGT+AGG | + | chr3.4:28944615-28944634 | MS.gene99127:CDS | 35.0% | |
| GACTCTATTGTGTATTGTAC+AGG | + | chr3.4:28942101-28942120 | MS.gene99127:CDS | 35.0% | |
| GAGTTATAAAGGGGAAAAAG+TGG | + | chr3.4:28942502-28942521 | MS.gene99127:intron | 35.0% | |
| GCAAGAGAGATAAGAAAAGA+AGG | + | chr3.4:28939575-28939594 | MS.gene99127:CDS | 35.0% | |
| GCATACATCTGATCTTGATT+TGG | - | chr3.4:28944352-28944371 | None:intergenic | 35.0% | |
| GTAAATGACTCAGTTAATCC+GGG | + | chr3.4:28942601-28942620 | MS.gene99127:intron | 35.0% | |
| GTAAGAGATGGAGAAAGTAA+AGG | - | chr3.4:28942775-28942794 | None:intergenic | 35.0% | |
| GTTATAGAAGATGACAGAGT+GGG | + | chr3.4:28942724-28942743 | MS.gene99127:CDS | 35.0% | |
| TAAGTATTTCAACATGGCCA+GGG | - | chr3.4:28939817-28939836 | None:intergenic | 35.0% | |
| TATGAGAAAATGTCGCACAT+CGG | - | chr3.4:28940289-28940308 | None:intergenic | 35.0% | |
| TATGAGTATGAGTAGGTACT+TGG | + | chr3.4:28943162-28943181 | MS.gene99127:intron | 35.0% | |
| TCCATAAATGAATGGAGCTA+CGG | - | chr3.4:28944531-28944550 | None:intergenic | 35.0% | |
| TCGAAGAATGTGTGTGTAAT+CGG | + | chr3.4:28939527-28939546 | MS.gene99127:CDS | 35.0% | |
| TTACACACACATTCTTCGAT+TGG | - | chr3.4:28939526-28939545 | None:intergenic | 35.0% | |
| TTATAGAAGATGACAGAGTG+GGG | + | chr3.4:28942725-28942744 | MS.gene99127:CDS | 35.0% | |
| TTATCAATACCTGTGGATGA+AGG | - | chr3.4:28940954-28940973 | None:intergenic | 35.0% | |
| TTCTATAACCACCATTCCTT+TGG | - | chr3.4:28942713-28942732 | None:intergenic | 35.0% | |
| TTCTCCATTCTTGTAATGGT+GGG | - | chr3.4:28944644-28944663 | None:intergenic | 35.0% | |
| TTGGGTTAAGAGAGATGATA+AGG | + | chr3.4:28939864-28939883 | MS.gene99127:CDS | 35.0% | |
| TTTCTCCATTCTTGTAATGG+TGG | - | chr3.4:28944645-28944664 | None:intergenic | 35.0% | |
| ! | ACACTCCCTTTTCAAATTAG+TGG | + | chr3.4:28943615-28943634 | MS.gene99127:intron | 35.0% |
| ! | CACTCCCTTTTCAAATTAGT+GGG | + | chr3.4:28943616-28943635 | MS.gene99127:intron | 35.0% |
| ! | CTTGATGATTATCGTGTTTG+TGG | + | chr3.4:28939917-28939936 | MS.gene99127:CDS | 35.0% |
| ! | CTTTTGACAGCTTGATTTAC+TGG | - | chr3.4:28942205-28942224 | None:intergenic | 35.0% |
| ! | GGAAGGGTAATTTTCATAGA+TGG | + | chr3.4:28942062-28942081 | MS.gene99127:CDS | 35.0% |
| ! | TTTTCTTGACACCAAAGGAA+TGG | + | chr3.4:28942699-28942718 | MS.gene99127:CDS | 35.0% |
| !! | ACAAAAGCTTTGGAAGCTTT+AGG | + | chr3.4:28940728-28940747 | MS.gene99127:intron | 35.0% |
| !! | ATTCCTTTGGTGTCAAGAAA+AGG | - | chr3.4:28942700-28942719 | None:intergenic | 35.0% |
| !! | CAAAAGCTTTGGAAGCTTTA+GGG | + | chr3.4:28940729-28940748 | MS.gene99127:intron | 35.0% |
| !! | CCTTTAATGGATGGCAATTT+TGG | - | chr3.4:28940046-28940065 | None:intergenic | 35.0% |
| !! | GGAAAAAAGTATTGCCATCA+TGG | + | chr3.4:28943361-28943380 | MS.gene99127:CDS | 35.0% |
| !! | TACATCTGATCTTGATTTGG+CGG | - | chr3.4:28944349-28944368 | None:intergenic | 35.0% |
| !! | TTCCTTTGGTGTCAAGAAAA+GGG | - | chr3.4:28942699-28942718 | None:intergenic | 35.0% |
| !!! | CACACTAGCACTTTTAAGAT+TGG | - | chr3.4:28944189-28944208 | None:intergenic | 35.0% |
| !!! | GTTTTTGGTCCCTATAAAAC+TGG | + | chr3.4:28941122-28941141 | MS.gene99127:intron | 35.0% |
| !!! | TCTAATTACTTTTTGCCACG+TGG | - | chr3.4:28940641-28940660 | None:intergenic | 35.0% |
| AACGGAAGTTAACTCACGTT+CGG | + | chr3.4:28944092-28944111 | MS.gene99127:intron | 40.0% | |
| AATCTCCAAGAGAAGTCATG+GGG | + | chr3.4:28939741-28939760 | MS.gene99127:CDS | 40.0% | |
| AATGCTCAGGAATGGATACA+TGG | + | chr3.4:28940393-28940412 | MS.gene99127:intron | 40.0% | |
| ACAATCTCCAAGAGAAGTCA+TGG | + | chr3.4:28939739-28939758 | MS.gene99127:CDS | 40.0% | |
| AGAACTAGTGGGAATAGCAA+AGG | + | chr3.4:28940849-28940868 | MS.gene99127:CDS | 40.0% | |
| AGTCCTTACTTCACTCAACT+TGG | + | chr3.4:28944762-28944781 | MS.gene99127:CDS | 40.0% | |
| ATAGAAGGTGAAGACCCTTT+AGG | + | chr3.4:28939665-28939684 | MS.gene99127:CDS | 40.0% | |
| ATCATGACATTGGAGGACAA+TGG | + | chr3.4:28939624-28939643 | MS.gene99127:CDS | 40.0% | |
| ATTGAGCTATCCACATTGCT+TGG | - | chr3.4:28943332-28943351 | None:intergenic | 40.0% | |
| ATTGCTTGGGACTCAAAGAA+AGG | - | chr3.4:28943318-28943337 | None:intergenic | 40.0% | |
| CAATCATGCACTTGTAGATC+TGG | - | chr3.4:28944445-28944464 | None:intergenic | 40.0% | |
| CAATCTCCAAGAGAAGTCAT+GGG | + | chr3.4:28939740-28939759 | MS.gene99127:CDS | 40.0% | |
| CCATAAATGAATGGAGCTAC+GGG | - | chr3.4:28944530-28944549 | None:intergenic | 40.0% | |
| GAACAGAATCATGACATTGG+AGG | + | chr3.4:28939617-28939636 | MS.gene99127:CDS | 40.0% | |
| GAAGGATTGTGATAAGGTTG+TGG | + | chr3.4:28939973-28939992 | MS.gene99127:CDS | 40.0% | |
| GAGTGAAGTAAGGACTTTGA+AGG | - | chr3.4:28944758-28944777 | None:intergenic | 40.0% | |
| GGAAATGATGAAATCCATCG+AGG | + | chr3.4:28943386-28943405 | MS.gene99127:CDS | 40.0% | |
| GGATAGCTCAATTGCTTTCT+GGG | + | chr3.4:28943340-28943359 | MS.gene99127:CDS | 40.0% | |
| GGCATTCCTACTCATGATAT+TGG | + | chr3.4:28943435-28943454 | MS.gene99127:CDS | 40.0% | |
| GGTTATAGAAGATGACAGAG+TGG | + | chr3.4:28942723-28942742 | MS.gene99127:CDS | 40.0% | |
| GGTTGTTAGAAGCAAAGAGA+AGG | + | chr3.4:28939955-28939974 | MS.gene99127:CDS | 40.0% | |
| GTATTATAGAGCAGGACTGT+CGG | - | chr3.4:28940687-28940706 | None:intergenic | 40.0% | |
| GTCAAGAAAAGGGAAGCTAT+AGG | - | chr3.4:28942689-28942708 | None:intergenic | 40.0% | |
| GTGGTTGGAAATTCCTATAG+TGG | + | chr3.4:28940811-28940830 | MS.gene99127:CDS | 40.0% | |
| TACCATGAAAGAGAAGTAGC+AGG | + | chr3.4:28943414-28943433 | MS.gene99127:CDS | 40.0% | |
| TATATAACAGGTTGTGGTGG+TGG | + | chr3.4:28940792-28940811 | MS.gene99127:intron | 40.0% | |
| TGCTATATCTTGGCCACTAT+AGG | - | chr3.4:28940827-28940846 | None:intergenic | 40.0% | |
| TGGATAGCTCAATTGCTTTC+TGG | + | chr3.4:28943339-28943358 | MS.gene99127:CDS | 40.0% | |
| TTATCTCTCTTGCTGCTACT+AGG | - | chr3.4:28939568-28939587 | None:intergenic | 40.0% | |
| TTCATCATTTCCTCCCATGA+TGG | - | chr3.4:28943378-28943397 | None:intergenic | 40.0% | |
| TTGAGCTATCCACATTGCTT+GGG | - | chr3.4:28943331-28943350 | None:intergenic | 40.0% | |
| TTGCTTGGGACTCAAAGAAA+GGG | - | chr3.4:28943317-28943336 | None:intergenic | 40.0% | |
| TTGTGATAAGGTTGTGGAAG+AGG | + | chr3.4:28939979-28939998 | MS.gene99127:CDS | 40.0% | |
| ! | AGTCCAAGTTGAGTGAAGTA+AGG | - | chr3.4:28944768-28944787 | None:intergenic | 40.0% |
| ! | TGGAAAGTGTGCTCATACAA+AGG | - | chr3.4:28942751-28942770 | None:intergenic | 40.0% |
| ! | TTCCCTTTTCTTGACACCAA+AGG | + | chr3.4:28942694-28942713 | MS.gene99127:CDS | 40.0% |
| !! | AAAAGTATTGCCATCATGGG+AGG | + | chr3.4:28943365-28943384 | MS.gene99127:CDS | 40.0% |
| !! | ATTCTTCGATTGGTTCGTCT+CGG | - | chr3.4:28939516-28939535 | None:intergenic | 40.0% |
| AATGTGTGTGTAATCGGTGC+TGG | + | chr3.4:28939533-28939552 | MS.gene99127:CDS | 45.0% | |
| AATTATTACCCGCTCCATCC+CGG | - | chr3.4:28942622-28942641 | None:intergenic | 45.0% | |
| ACCTCATTGTGGAATGGTTC+TGG | - | chr3.4:28940455-28940474 | None:intergenic | 45.0% | |
| AGAAAGGTAGAGACATGAGG+AGG | + | chr3.4:28939789-28939808 | MS.gene99127:CDS | 45.0% | |
| AGGGCTCAATTAATTCGGGA+CGG | - | chr3.4:28942392-28942411 | None:intergenic | 45.0% | |
| ATGACTCAGTTAATCCGGGA+TGG | + | chr3.4:28942605-28942624 | MS.gene99127:intron | 45.0% | |
| CCAAGAAAGGTAGAGACATG+AGG | + | chr3.4:28939786-28939805 | MS.gene99127:CDS | 45.0% | |
| CCCGTAGCTCCATTCATTTA+TGG | + | chr3.4:28944527-28944546 | MS.gene99127:intron | 45.0% | |
| CCTCATGTCTCTACCTTTCT+TGG | - | chr3.4:28939789-28939808 | None:intergenic | 45.0% | |
| CTGATGTAGGACTAGACCAA+TGG | - | chr3.4:28944481-28944500 | None:intergenic | 45.0% | |
| GACTCCCACCATTACAAGAA+TGG | + | chr3.4:28944637-28944656 | MS.gene99127:CDS | 45.0% | |
| GAGATGGAGAAAGTAAAGGG+TGG | - | chr3.4:28942771-28942790 | None:intergenic | 45.0% | |
| GGAGACATATCGAGACTCAT+GGG | + | chr3.4:28944707-28944726 | MS.gene99127:CDS | 45.0% | |
| TAAATGAATGGAGCTACGGG+TGG | - | chr3.4:28944527-28944546 | None:intergenic | 45.0% | |
| TACCCTTCCATCCTCTTCAA+GGG | - | chr3.4:28942051-28942070 | None:intergenic | 45.0% | |
| TCCAGAACCATTCCACAATG+AGG | + | chr3.4:28940451-28940470 | MS.gene99127:CDS | 45.0% | |
| TCTTGACACCAAAGGAATGG+TGG | + | chr3.4:28942702-28942721 | MS.gene99127:CDS | 45.0% | |
| TCTTTGAGTCCCAAGCAATG+TGG | + | chr3.4:28943319-28943338 | MS.gene99127:CDS | 45.0% | |
| TGGAGACATATCGAGACTCA+TGG | + | chr3.4:28944706-28944725 | MS.gene99127:CDS | 45.0% | |
| TTACCCTTCCATCCTCTTCA+AGG | - | chr3.4:28942052-28942071 | None:intergenic | 45.0% | |
| TTCATGGTAGAACTCCTCGA+TGG | - | chr3.4:28943403-28943422 | None:intergenic | 45.0% | |
| ! | AGACTCATGGGATGATGATG+AGG | + | chr3.4:28944719-28944738 | MS.gene99127:CDS | 45.0% |
| ! | GGAAGAGGTTTTTGATGCAG+TGG | + | chr3.4:28939994-28940013 | MS.gene99127:CDS | 45.0% |
| ! | GGAAGGGCATACAAAAGCTT+TGG | + | chr3.4:28940718-28940737 | MS.gene99127:intron | 45.0% |
| ! | TACCTGTGGATGAAGGTGTA+AGG | - | chr3.4:28940947-28940966 | None:intergenic | 45.0% |
| ! | TGCCTGCTACTTCTCTTTCA+TGG | - | chr3.4:28943419-28943438 | None:intergenic | 45.0% |
| !! | AATATAAAATTAACAAAATT+TGG | + | chr3.4:28941385-28941404 | MS.gene99127:intron | 5.0% |
| !! | TTAATTAATAAATATTAGTA+GGG | - | chr3.4:28941653-28941672 | None:intergenic | 5.0% |
| !! | TTTAATTAATAAATATTAGT+AGG | - | chr3.4:28941654-28941673 | None:intergenic | 5.0% |
| !!! | TATTTTTTTCTTTATTTTAT+TGG | + | chr3.4:28941872-28941891 | MS.gene99127:intron | 5.0% |
| !!! | TTTTTTTTTATTTATATAAC+AGG | + | chr3.4:28940780-28940799 | MS.gene99127:intron | 5.0% |
| ATAGACGCCCTTGAAGAGGA+TGG | + | chr3.4:28942041-28942060 | MS.gene99127:CDS | 50.0% | |
| GACCTTACACCTTCATCCAC+AGG | + | chr3.4:28940942-28940961 | MS.gene99127:CDS | 50.0% | |
| GTGAACCCCATGACTTCTCT+TGG | - | chr3.4:28939749-28939768 | None:intergenic | 50.0% | |
| TCAGTTAATCCGGGATGGAG+CGG | + | chr3.4:28942610-28942629 | MS.gene99127:intron | 50.0% | |
| TGGTTGAGCGTAATGACCAG+TGG | - | chr3.4:28940026-28940045 | None:intergenic | 50.0% | |
| TGTCCAGTGATTTCGCTGTG+CGG | + | chr3.4:28942296-28942315 | MS.gene99127:intron | 50.0% | |
| ! | AAGGACTTTGAAGGGCCTCT+TGG | - | chr3.4:28944749-28944768 | None:intergenic | 50.0% |
| ! | TGATGATGAGGTGCTCCAAG+AGG | + | chr3.4:28944731-28944750 | MS.gene99127:CDS | 50.0% |
| !! | TAACAGGTTGTGGTGGTGGT+TGG | + | chr3.4:28940796-28940815 | MS.gene99127:intron | 50.0% |
| ACGCCCTTGAAGAGGATGGA+AGG | + | chr3.4:28942045-28942064 | MS.gene99127:CDS | 55.0% | |
| AGAGACATGAGGAGGTTCCC+TGG | + | chr3.4:28939797-28939816 | MS.gene99127:CDS | 55.0% | |
| AGTCCGCACAGCGAAATCAC+TGG | - | chr3.4:28942302-28942321 | None:intergenic | 55.0% | |
| CAGTTAATCCGGGATGGAGC+GGG | + | chr3.4:28942611-28942630 | MS.gene99127:intron | 55.0% | |
| CGCCCTTGAAGAGGATGGAA+GGG | + | chr3.4:28942046-28942065 | MS.gene99127:CDS | 55.0% | |
| GATGCAGTGGTTGTTGCCAC+TGG | + | chr3.4:28940007-28940026 | MS.gene99127:CDS | 55.0% | |
| GCAGATAGACGCCCTTGAAG+AGG | + | chr3.4:28942037-28942056 | MS.gene99127:intron | 55.0% | |
| CTTGCTGCTACTAGGCCTGC+TGG | - | chr3.4:28939560-28939579 | None:intergenic | 60.0% | |
| TGCTAGCGACGCGTTACCTC+TGG | - | chr3.4:28940180-28940199 | None:intergenic | 60.0% | |
| !! | GTAATCGGTGCTGGACCAGC+AGG | + | chr3.4:28939542-28939561 | MS.gene99127:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 28939506 | 28944797 | 28939506 | ID=MS.gene99127 |
| chr3.4 | mRNA | 28939506 | 28944797 | 28939506 | ID=MS.gene99127.t1;Parent=MS.gene99127 |
| chr3.4 | exon | 28939506 | 28940064 | 28939506 | ID=MS.gene99127.t1.exon1;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28939506 | 28940064 | 28939506 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| chr3.4 | exon | 28940402 | 28940472 | 28940402 | ID=MS.gene99127.t1.exon2;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28940402 | 28940472 | 28940402 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| chr3.4 | exon | 28940802 | 28940963 | 28940802 | ID=MS.gene99127.t1.exon3;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28940802 | 28940963 | 28940802 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| chr3.4 | exon | 28942041 | 28942123 | 28942041 | ID=MS.gene99127.t1.exon4;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28942041 | 28942123 | 28942041 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| chr3.4 | exon | 28942681 | 28942816 | 28942681 | ID=MS.gene99127.t1.exon5;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28942681 | 28942816 | 28942681 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| chr3.4 | exon | 28943303 | 28943467 | 28943303 | ID=MS.gene99127.t1.exon6;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28943303 | 28943467 | 28943303 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| chr3.4 | exon | 28944609 | 28944797 | 28944609 | ID=MS.gene99127.t1.exon7;Parent=MS.gene99127.t1 |
| chr3.4 | CDS | 28944609 | 28944797 | 28944609 | ID=cds.MS.gene99127.t1;Parent=MS.gene99127.t1 |
| Gene Sequence |
| Protein sequence |
