Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015941.t1 | XP_003588682.1 | 98.8 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 1.50E-279 | 971.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015941.t1 | Q93YV6 | 72.3 | 502 | 125 | 3 | 1 | 494 | 1 | 496 | 6.1e-213 | 741.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015941.t1 | G7I6A8 | 98.8 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 1.1e-279 | 971.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029756 | MS.gene015941 | PPI |
| MS.gene035014 | MS.gene015941 | PPI |
| MS.gene70740 | MS.gene015941 | PPI |
| MS.gene25819 | MS.gene015941 | PPI |
| MS.gene067043 | MS.gene015941 | PPI |
| MS.gene47441 | MS.gene015941 | PPI |
| MS.gene015941 | MS.gene051425 | PPI |
| MS.gene044183 | MS.gene015941 | PPI |
| MS.gene015941 | MS.gene22385 | PPI |
| MS.gene79120 | MS.gene015941 | PPI |
| MS.gene007562 | MS.gene015941 | PPI |
| MS.gene015941 | MS.gene75564 | PPI |
| MS.gene015941 | MS.gene020631 | PPI |
| MS.gene045221 | MS.gene015941 | PPI |
| MS.gene007383 | MS.gene015941 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015941.t1 | MTR_1g011460 | 98.785 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1003 |
| MS.gene015941.t1 | MTR_3g107980 | 79.400 | 500 | 94 | 4 | 1 | 492 | 1 | 499 | 0.0 | 818 |
| MS.gene015941.t1 | MTR_4g113020 | 59.281 | 501 | 188 | 4 | 1 | 489 | 1 | 497 | 0.0 | 628 |
| MS.gene015941.t1 | MTR_6g022720 | 53.711 | 512 | 211 | 4 | 1 | 491 | 1 | 507 | 0.0 | 553 |
| MS.gene015941.t1 | MTR_3g086010 | 53.502 | 514 | 213 | 4 | 1 | 490 | 1 | 512 | 0.0 | 546 |
| MS.gene015941.t1 | MTR_3g080070 | 58.079 | 458 | 191 | 1 | 33 | 490 | 67 | 523 | 0.0 | 540 |
| MS.gene015941.t1 | MTR_1g062950 | 57.783 | 469 | 195 | 3 | 14 | 481 | 14 | 480 | 0.0 | 533 |
| MS.gene015941.t1 | MTR_4g113020 | 61.578 | 393 | 136 | 3 | 1 | 382 | 1 | 389 | 1.94e-180 | 511 |
| MS.gene015941.t1 | MTR_1g111570 | 51.313 | 495 | 229 | 6 | 1 | 490 | 1 | 488 | 2.60e-171 | 492 |
| MS.gene015941.t1 | MTR_6g022720 | 54.364 | 401 | 158 | 3 | 1 | 380 | 1 | 397 | 1.39e-152 | 441 |
| MS.gene015941.t1 | MTR_7g102900 | 57.784 | 379 | 148 | 4 | 11 | 388 | 3 | 370 | 4.59e-146 | 423 |
| MS.gene015941.t1 | MTR_1g112940 | 41.500 | 400 | 227 | 3 | 80 | 477 | 40 | 434 | 5.78e-119 | 357 |
| MS.gene015941.t1 | MTR_7g102920 | 61.224 | 98 | 38 | 0 | 380 | 477 | 22 | 119 | 3.19e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015941.t1 | AT5G25510 | 72.655 | 501 | 125 | 3 | 1 | 494 | 1 | 496 | 0.0 | 761 |
| MS.gene015941.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene015941.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene015941.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene015941.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene015941.t1 | AT1G13460 | 65.550 | 418 | 143 | 1 | 62 | 479 | 71 | 487 | 0.0 | 571 |
| MS.gene015941.t1 | AT1G13460 | 65.550 | 418 | 143 | 1 | 62 | 479 | 71 | 487 | 0.0 | 571 |
| MS.gene015941.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene015941.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene015941.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene015941.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene015941.t1 | AT3G21650 | 53.458 | 535 | 195 | 6 | 1 | 489 | 1 | 527 | 0.0 | 561 |
| MS.gene015941.t1 | AT3G21650 | 53.458 | 535 | 195 | 6 | 1 | 489 | 1 | 527 | 0.0 | 561 |
| MS.gene015941.t1 | AT3G09880 | 55.960 | 495 | 203 | 3 | 1 | 484 | 1 | 491 | 0.0 | 542 |
| MS.gene015941.t1 | AT5G03470 | 53.388 | 487 | 210 | 5 | 1 | 475 | 1 | 482 | 0.0 | 520 |
| MS.gene015941.t1 | AT3G26030 | 51.681 | 476 | 222 | 4 | 1 | 474 | 1 | 470 | 7.43e-173 | 495 |
| MS.gene015941.t1 | AT3G26020 | 48.551 | 552 | 176 | 7 | 1 | 474 | 1 | 522 | 1.30e-167 | 484 |
| MS.gene015941.t1 | AT3G54930 | 50.641 | 468 | 220 | 3 | 12 | 478 | 37 | 494 | 7.15e-165 | 476 |
| MS.gene015941.t1 | AT3G54930 | 50.641 | 468 | 220 | 3 | 12 | 478 | 37 | 494 | 7.15e-165 | 476 |
| MS.gene015941.t1 | AT3G26020 | 48.972 | 535 | 182 | 9 | 1 | 474 | 1 | 505 | 2.86e-161 | 467 |
| MS.gene015941.t1 | AT3G26020 | 48.972 | 535 | 182 | 9 | 1 | 474 | 1 | 505 | 2.86e-161 | 467 |
| MS.gene015941.t1 | AT3G26020 | 48.972 | 535 | 182 | 9 | 1 | 474 | 1 | 505 | 2.86e-161 | 467 |
| MS.gene015941.t1 | AT4G15415 | 56.608 | 401 | 151 | 4 | 1 | 381 | 1 | 398 | 5.01e-158 | 456 |
| MS.gene015941.t1 | AT3G54930 | 48.787 | 371 | 179 | 3 | 12 | 381 | 37 | 397 | 1.85e-120 | 359 |
Find 91 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCGTTGGTGCCATTTA+AGG | 0.176241 | 1.1:-9181413 | MS.gene015941:CDS |
| TATTAACAGCCTACACTTTC+AGG | 0.179997 | 1.1:-9180477 | MS.gene015941:intron |
| ATCTTGTCATACTAACTTTA+AGG | 0.180792 | 1.1:-9179601 | MS.gene015941:CDS |
| TTTCCTGCCAGCATGGTTTC+TGG | 0.193282 | 1.1:-9181439 | MS.gene015941:CDS |
| CCATGCCTCCTTTCGCTTCT+CGG | 0.228238 | 1.1:+9179551 | None:intergenic |
| GCATTTGGAACATCCTTAAA+TGG | 0.232790 | 1.1:+9181400 | None:intergenic |
| CTTGCACAAGCCTAAATCTT+TGG | 0.243418 | 1.1:-9180720 | MS.gene015941:CDS |
| GGGTGAATTGGAAGAAATTT+TGG | 0.250951 | 1.1:-9180564 | MS.gene015941:CDS |
| GCCAGTCTCAAACCTGTAAT+TGG | 0.271717 | 1.1:-9179510 | MS.gene015941:CDS |
| TCTTTCTGACTATTTGTTAC+TGG | 0.282188 | 1.1:+9180599 | None:intergenic |
| TTGCACAAGCCTAAATCTTT+GGG | 0.291105 | 1.1:-9180719 | MS.gene015941:CDS |
| CCACCTAATTATAGGGCTAA+TGG | 0.304137 | 1.1:-9181166 | MS.gene015941:CDS |
| ACAGCAGTATTTCCAATTAC+AGG | 0.308627 | 1.1:+9179498 | None:intergenic |
| TAAGCGGTTTGTTAAAATAC+TGG | 0.331723 | 1.1:-9180622 | MS.gene015941:CDS |
| ACACCATTAGCCCTATAATT+AGG | 0.353783 | 1.1:+9181163 | None:intergenic |
| TGAGTTAAGTTTACAACTGC+TGG | 0.364055 | 1.1:+9179669 | None:intergenic |
| CAGCGGCACCCTGCGGTCGC+TGG | 0.367997 | 1.1:+9181494 | None:intergenic |
| TAATATCAGAAAGATGTTCT+TGG | 0.368168 | 1.1:-9179646 | MS.gene015941:CDS |
| TGGTGCATAGACCCGTTATT+CGG | 0.388557 | 1.1:-9180898 | MS.gene015941:CDS |
| TCGAGACGGCTCATCCGAAT+AGG | 0.409983 | 1.1:+9181549 | None:intergenic |
| ATTAATCGATTTCCGAATAA+CGG | 0.413381 | 1.1:+9180886 | None:intergenic |
| GAAGACATCGAAAACCTATT+CGG | 0.423211 | 1.1:-9181563 | MS.gene015941:CDS |
| TAACGGGATTGCTGAGTTGT+TGG | 0.427203 | 1.1:-9180825 | MS.gene015941:CDS |
| ATAACAATGCTTGCTAGCTT+CGG | 0.430662 | 1.1:+9180644 | None:intergenic |
| TTGATATTCTTATCTAGTGC+TGG | 0.438360 | 1.1:+9179705 | None:intergenic |
| TTAATCGATTTCCGAATAAC+GGG | 0.445669 | 1.1:+9180887 | None:intergenic |
| ATCCTATGTTTGATCCTGCT+TGG | 0.447732 | 1.1:-9181108 | MS.gene015941:CDS |
| ACAGTGGAACCATGATCCTT+TGG | 0.451226 | 1.1:+9180519 | None:intergenic |
| TAGGGTTTATGGGAAGTTCA+TGG | 0.454043 | 1.1:-9180918 | MS.gene015941:CDS |
| ATCTAGTGCTGGAAATATGA+TGG | 0.458021 | 1.1:+9179716 | None:intergenic |
| CGGCACCCTGCGGTCGCTGG+TGG | 0.458815 | 1.1:+9181497 | None:intergenic |
| AGATGTGAAAAGGAAAACTT+TGG | 0.460993 | 1.1:-9181290 | MS.gene015941:CDS |
| TCCAATTACAGGTTTGAGAC+TGG | 0.462838 | 1.1:+9179509 | None:intergenic |
| GGTCGTTGTTCCATAAGAAA+AGG | 0.470485 | 1.1:+9179781 | None:intergenic |
| CAGAAAGATGTTCTTGGAGA+TGG | 0.481131 | 1.1:-9179640 | MS.gene015941:CDS |
| TTCAAACAATCTCTTTCTCT+AGG | 0.484649 | 1.1:+9180953 | None:intergenic |
| AGTTGCAAATGTGGCCAAGC+AGG | 0.488605 | 1.1:+9181094 | None:intergenic |
| TAAAAGCCACCAGCGACCGC+AGG | 0.490732 | 1.1:-9181503 | MS.gene015941:CDS |
| TATTACGCAGTTCTTAGAAA+AGG | 0.492907 | 1.1:-9180669 | MS.gene015941:CDS |
| AGCTGTGTTTCCTGCCAGCA+TGG | 0.495905 | 1.1:-9181446 | MS.gene015941:CDS |
| ATCAAACAATTCAAGCAACT+TGG | 0.497011 | 1.1:+9180985 | None:intergenic |
| ACATTTGATTTCACTGATCC+TGG | 0.499527 | 1.1:-9181331 | MS.gene015941:CDS |
| CTACACATTGCAAGAATAGC+AGG | 0.504754 | 1.1:+9181220 | None:intergenic |
| TTCTCAGCAACATTCTTACC+AGG | 0.517344 | 1.1:+9181313 | None:intergenic |
| GTGCTGGAAATATGATGGGC+AGG | 0.517705 | 1.1:+9179721 | None:intergenic |
| TCATAAACAAGTTGCAAATG+TGG | 0.518027 | 1.1:+9181085 | None:intergenic |
| GGTTTCTGGTATTGAACCGT+TGG | 0.524898 | 1.1:-9181425 | MS.gene015941:CDS |
| GCTTGAATTGTTTGATTCTG+AGG | 0.525615 | 1.1:-9180978 | MS.gene015941:CDS |
| AAGATTTAGGCTTGTGCAAG+GGG | 0.529195 | 1.1:+9180723 | None:intergenic |
| GAGTTAAGTTTACAACTGCT+GGG | 0.529784 | 1.1:+9179670 | None:intergenic |
| TTCAACGTGTCTTGATGCTA+AGG | 0.531979 | 1.1:-9181041 | MS.gene015941:CDS |
| TCTCAGTTTCAATCACGAAT+CGG | 0.533096 | 1.1:+9180852 | None:intergenic |
| GTCGTTGTTCCATAAGAAAA+GGG | 0.533170 | 1.1:+9179782 | None:intergenic |
| ATTGAAACTGAGAAACATAA+CGG | 0.535729 | 1.1:-9180842 | MS.gene015941:CDS |
| ATTTGCTCTACCTTTGAAAG+AGG | 0.540618 | 1.1:-9180777 | MS.gene015941:CDS |
| TTGCTGAGAAAGATGTGAAA+AGG | 0.544023 | 1.1:-9181300 | MS.gene015941:CDS |
| AGTAACAAATAGTCAGAAAG+AGG | 0.549106 | 1.1:-9180597 | MS.gene015941:CDS |
| TTGAAACTGAGAAACATAAC+GGG | 0.549613 | 1.1:-9180841 | MS.gene015941:CDS |
| CCGAGAAGCGAAAGGAGGCA+TGG | 0.554722 | 1.1:-9179551 | MS.gene015941:CDS |
| ATAAGAATATCAAAAGCCAC+TGG | 0.557117 | 1.1:-9179695 | MS.gene015941:CDS |
| ATACCAGAAACCATGCTGGC+AGG | 0.558392 | 1.1:+9181436 | None:intergenic |
| TGATGGGCAGGATCACTTGA+CGG | 0.559231 | 1.1:+9179733 | None:intergenic |
| AAAGATTTAGGCTTGTGCAA+GGG | 0.560195 | 1.1:+9180722 | None:intergenic |
| GGTAGAGTTCCAAAGGATCA+TGG | 0.560709 | 1.1:-9180528 | MS.gene015941:CDS |
| TGCACAAGCCTAAATCTTTG+GGG | 0.562777 | 1.1:-9180718 | MS.gene015941:CDS |
| TCTAGTGCTGGAAATATGAT+GGG | 0.566737 | 1.1:+9179717 | None:intergenic |
| CAAAGATTTAGGCTTGTGCA+AGG | 0.572618 | 1.1:+9180721 | None:intergenic |
| GACTATTTCAGGTAGCTGAA+AGG | 0.579450 | 1.1:-9179806 | MS.gene015941:intron |
| CATGCAGTTCATGTCATCAA+AGG | 0.580056 | 1.1:+9179465 | None:intergenic |
| TTACAACTGCTGGGTTCCAG+TGG | 0.582552 | 1.1:+9179679 | None:intergenic |
| CTAGCAAGCATTGTTATAAG+CGG | 0.585033 | 1.1:-9180638 | MS.gene015941:CDS |
| AATGGTGTTGTTGCTAGTGG+TGG | 0.597850 | 1.1:-9181148 | MS.gene015941:CDS |
| TTAACATGGTAGAGTTCCAA+AGG | 0.605900 | 1.1:-9180535 | MS.gene015941:CDS |
| AAAAGCCACCAGCGACCGCA+GGG | 0.608551 | 1.1:-9181502 | MS.gene015941:CDS |
| GCACAAGCCTAAATCTTTGG+GGG | 0.609126 | 1.1:-9180717 | MS.gene015941:CDS |
| TAAGAACTGCGTAATACAGA+AGG | 0.612374 | 1.1:+9180676 | None:intergenic |
| GCTAATGGTGTTGTTGCTAG+TGG | 0.615309 | 1.1:-9181151 | MS.gene015941:CDS |
| CTCAGAAGCCGAGAAGCGAA+AGG | 0.616754 | 1.1:-9179559 | MS.gene015941:CDS |
| AGGAACACAAAATCTTCTTG+TGG | 0.618445 | 1.1:-9180757 | MS.gene015941:CDS |
| TTCAATACCAGAAACCATGC+TGG | 0.620617 | 1.1:+9181432 | None:intergenic |
| TTGTCATACTAACTTTAAGG+AGG | 0.630616 | 1.1:-9179598 | MS.gene015941:CDS |
| GAGCAATCAAATTTACAATG+TGG | 0.630738 | 1.1:+9179760 | None:intergenic |
| AGCTCGTTTCAACGAAGCAG+CGG | 0.634286 | 1.1:+9181477 | None:intergenic |
| CCATTAGCCCTATAATTAGG+TGG | 0.638080 | 1.1:+9181166 | None:intergenic |
| AGAAGCCGAGAAGCGAAAGG+AGG | 0.640183 | 1.1:-9179556 | MS.gene015941:CDS |
| AATCAAATGTCACACAACAA+AGG | 0.641518 | 1.1:+9181344 | None:intergenic |
| AATTACAGGTTTGAGACTGG+CGG | 0.648674 | 1.1:+9179512 | None:intergenic |
| AACGAAGCAGCGGCACCCTG+CGG | 0.649669 | 1.1:+9181487 | None:intergenic |
| ACATCCTTAAATGGCACCAA+CGG | 0.658669 | 1.1:+9181409 | None:intergenic |
| CGTGATGAATCAACTCGAGA+CGG | 0.663233 | 1.1:+9181535 | None:intergenic |
| GGCCAAGCAGGATCAAACAT+AGG | 0.678457 | 1.1:+9181106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTAAAGTAAATATAAT+TGG | + | chr1.1:9180789-9180808 | None:intergenic | 10.0% |
| !!! | TTTGAAAACAATTTTACATA+GGG | - | chr1.1:9180132-9180151 | MS.gene015941:intron | 15.0% |
| !! | ACTTATAATGACATATAGTT+GGG | + | chr1.1:9180822-9180841 | None:intergenic | 20.0% |
| !! | TAAATCATTTACTCAAACTA+AGG | + | chr1.1:9181079-9181098 | None:intergenic | 20.0% |
| !!! | GTTTGAAAACAATTTTACAT+AGG | - | chr1.1:9180131-9180150 | MS.gene015941:intron | 20.0% |
| !!! | TTTTAAAAAGTGCCAAAATA+CGG | + | chr1.1:9181176-9181195 | None:intergenic | 20.0% |
| ! | ACCATGTATTATACATTCAA+GGG | + | chr1.1:9180848-9180867 | None:intergenic | 25.0% |
| ! | ATCTTGTCATACTAACTTTA+AGG | - | chr1.1:9181467-9181486 | MS.gene015941:CDS | 25.0% |
| ! | ATTGAAACTGAGAAACATAA+CGG | - | chr1.1:9180226-9180245 | MS.gene015941:intron | 25.0% |
| ! | CAACTATATGTCATTATAAG+TGG | - | chr1.1:9180821-9180840 | MS.gene015941:CDS | 25.0% |
| ! | CACTTATAATGACATATAGT+TGG | + | chr1.1:9180823-9180842 | None:intergenic | 25.0% |
| ! | TAATATCAGAAAGATGTTCT+TGG | - | chr1.1:9181422-9181441 | MS.gene015941:CDS | 25.0% |
| !! | AATACATGGTGAATCTTTTT+GGG | - | chr1.1:9180858-9180877 | MS.gene015941:CDS | 25.0% |
| !! | ACAATTTTACATAGGGTTTA+TGG | - | chr1.1:9180139-9180158 | MS.gene015941:intron | 25.0% |
| !! | AGTTTTTCCACCTAATTATA+GGG | - | chr1.1:9179895-9179914 | MS.gene015941:intron | 25.0% |
| !! | ATTAATCGATTTCCGAATAA+CGG | + | chr1.1:9180185-9180204 | None:intergenic | 25.0% |
| !! | CAATTTTACATAGGGTTTAT+GGG | - | chr1.1:9180140-9180159 | MS.gene015941:intron | 25.0% |
| !! | TAATACATGGTGAATCTTTT+TGG | - | chr1.1:9180857-9180876 | MS.gene015941:CDS | 25.0% |
| !!! | AATTTTGGAAGCAATTAACA+TGG | - | chr1.1:9180519-9180538 | MS.gene015941:CDS | 25.0% |
| !!! | AGTTGGATTTTAATCTATTC+TGG | - | chr1.1:9180952-9180971 | MS.gene015941:CDS | 25.0% |
| !!! | ATGTTGTTTTTCCATTCAAA+AGG | - | chr1.1:9180672-9180691 | MS.gene015941:CDS | 25.0% |
| !!! | ATTCTTTTTTCTGTTCATCA+TGG | - | chr1.1:9181240-9181259 | MS.gene015941:CDS | 25.0% |
| !!! | TTTAAAAAGTGCCAAAATAC+GGG | + | chr1.1:9181175-9181194 | None:intergenic | 25.0% |
| AATCAAATGTCACACAACAA+AGG | + | chr1.1:9179727-9179746 | None:intergenic | 30.0% | |
| AGATGTGAAAAGGAAAACTT+TGG | - | chr1.1:9179778-9179797 | MS.gene015941:CDS | 30.0% | |
| AGTAACAAATAGTCAGAAAG+AGG | - | chr1.1:9180471-9180490 | MS.gene015941:intron | 30.0% | |
| ATAAGAATATCAAAAGCCAC+TGG | - | chr1.1:9181373-9181392 | MS.gene015941:CDS | 30.0% | |
| ATAATGACATATAGTTGGGT+AGG | + | chr1.1:9180818-9180837 | None:intergenic | 30.0% | |
| ATCAAACAATTCAAGCAACT+TGG | + | chr1.1:9180086-9180105 | None:intergenic | 30.0% | |
| CACCATGTATTATACATTCA+AGG | + | chr1.1:9180849-9180868 | None:intergenic | 30.0% | |
| GAGCAATCAAATTTACAATG+TGG | + | chr1.1:9181311-9181330 | None:intergenic | 30.0% | |
| TATTACGCAGTTCTTAGAAA+AGG | - | chr1.1:9180399-9180418 | MS.gene015941:intron | 30.0% | |
| TCATAAACAAGTTGCAAATG+TGG | + | chr1.1:9179986-9180005 | None:intergenic | 30.0% | |
| TCCCTTGAATGTATAATACA+TGG | - | chr1.1:9180844-9180863 | MS.gene015941:CDS | 30.0% | |
| TTCAAACAATCTCTTTCTCT+AGG | + | chr1.1:9180118-9180137 | None:intergenic | 30.0% | |
| TTGAAACTGAGAAACATAAC+GGG | - | chr1.1:9180227-9180246 | MS.gene015941:intron | 30.0% | |
| TTGATATTCTTATCTAGTGC+TGG | + | chr1.1:9181366-9181385 | None:intergenic | 30.0% | |
| ! | AAGTTCATCTTTTCAGCATT+TGG | + | chr1.1:9179686-9179705 | None:intergenic | 30.0% |
| ! | ATACATGGTGAATCTTTTTG+GGG | - | chr1.1:9180859-9180878 | MS.gene015941:CDS | 30.0% |
| ! | ATTTTGTGTTCCTCTTTCAA+AGG | + | chr1.1:9180304-9180323 | None:intergenic | 30.0% |
| ! | GAGTTTTTCCACCTAATTAT+AGG | - | chr1.1:9179894-9179913 | MS.gene015941:intron | 30.0% |
| ! | TCTTTCTGACTATTTGTTAC+TGG | + | chr1.1:9180472-9180491 | None:intergenic | 30.0% |
| ! | TTAATCGATTTCCGAATAAC+GGG | + | chr1.1:9180184-9180203 | None:intergenic | 30.0% |
| ! | TTATGCATCTGTAGCATTTT+TGG | - | chr1.1:9181125-9181144 | MS.gene015941:CDS | 30.0% |
| ! | TTGTCATACTAACTTTAAGG+AGG | - | chr1.1:9181470-9181489 | MS.gene015941:CDS | 30.0% |
| !! | ACAATTTTACCTGAAAGTGT+AGG | + | chr1.1:9180603-9180622 | None:intergenic | 30.0% |
| !! | TAAGCGGTTTGTTAAAATAC+TGG | - | chr1.1:9180446-9180465 | MS.gene015941:intron | 30.0% |
| AAAGATTTAGGCTTGTGCAA+GGG | + | chr1.1:9180349-9180368 | None:intergenic | 35.0% | |
| AATACGGGCAAAAGATTACT+AGG | + | chr1.1:9181160-9181179 | None:intergenic | 35.0% | |
| ACACCATTAGCCCTATAATT+AGG | + | chr1.1:9179908-9179927 | None:intergenic | 35.0% | |
| ACAGCAGTATTTCCAATTAC+AGG | + | chr1.1:9181573-9181592 | None:intergenic | 35.0% | |
| ACCATGCAAACTATAGATCA+AGG | + | chr1.1:9180710-9180729 | None:intergenic | 35.0% | |
| AGGAACACAAAATCTTCTTG+TGG | - | chr1.1:9180311-9180330 | MS.gene015941:intron | 35.0% | |
| ATACGGGCAAAAGATTACTA+GGG | + | chr1.1:9181159-9181178 | None:intergenic | 35.0% | |
| ATGCTACAGATGCATAAAGA+TGG | + | chr1.1:9181122-9181141 | None:intergenic | 35.0% | |
| GAAGACATCGAAAACCTATT+CGG | - | chr1.1:9179505-9179524 | MS.gene015941:CDS | 35.0% | |
| GAGTTAAGTTTACAACTGCT+GGG | + | chr1.1:9181401-9181420 | None:intergenic | 35.0% | |
| GCAAACTATAGATCAAGGAA+TGG | + | chr1.1:9180705-9180724 | None:intergenic | 35.0% | |
| GCTTGAATTGTTTGATTCTG+AGG | - | chr1.1:9180090-9180109 | MS.gene015941:intron | 35.0% | |
| GTCGTTGTTCCATAAGAAAA+GGG | + | chr1.1:9181289-9181308 | None:intergenic | 35.0% | |
| TAAGAACTGCGTAATACAGA+AGG | + | chr1.1:9180395-9180414 | None:intergenic | 35.0% | |
| TATTAACAGCCTACACTTTC+AGG | - | chr1.1:9180591-9180610 | MS.gene015941:CDS | 35.0% | |
| TCTCAGTTTCAATCACGAAT+CGG | + | chr1.1:9180219-9180238 | None:intergenic | 35.0% | |
| TGAGTTAAGTTTACAACTGC+TGG | + | chr1.1:9181402-9181421 | None:intergenic | 35.0% | |
| TGCTACAGATGCATAAAGAT+GGG | + | chr1.1:9181121-9181140 | None:intergenic | 35.0% | |
| TTAACAGACTAGCATGTCAA+CGG | + | chr1.1:9181210-9181229 | None:intergenic | 35.0% | |
| TTAACATGGTAGAGTTCCAA+AGG | - | chr1.1:9180533-9180552 | MS.gene015941:CDS | 35.0% | |
| TTGCACAAGCCTAAATCTTT+GGG | - | chr1.1:9180349-9180368 | MS.gene015941:intron | 35.0% | |
| TTGCTGAGAAAGATGTGAAA+AGG | - | chr1.1:9179768-9179787 | MS.gene015941:CDS | 35.0% | |
| ! | AAATTTTCAACAAGCTTCCC+CGG | - | chr1.1:9179483-9179502 | MS.gene015941:CDS | 35.0% |
| ! | AATAGGTTTTCGATGTCTTC+CGG | + | chr1.1:9179505-9179524 | None:intergenic | 35.0% |
| ! | ACATTTGATTTCACTGATCC+TGG | - | chr1.1:9179737-9179756 | MS.gene015941:CDS | 35.0% |
| ! | ATAACAATGCTTGCTAGCTT+CGG | + | chr1.1:9180427-9180446 | None:intergenic | 35.0% |
| ! | ATCTAGTGCTGGAAATATGA+TGG | + | chr1.1:9181355-9181374 | None:intergenic | 35.0% |
| ! | ATGGATCTGATCCTTTTGAA+TGG | + | chr1.1:9180686-9180705 | None:intergenic | 35.0% |
| ! | ATTTGCTCTACCTTTGAAAG+AGG | - | chr1.1:9180291-9180310 | MS.gene015941:intron | 35.0% |
| ! | CAGAAAGAGGTGATGTTTTT+GGG | - | chr1.1:9180484-9180503 | MS.gene015941:CDS | 35.0% |
| ! | CTAGCAAGCATTGTTATAAG+CGG | - | chr1.1:9180430-9180449 | MS.gene015941:intron | 35.0% |
| ! | GCATTTGGAACATCCTTAAA+TGG | + | chr1.1:9179671-9179690 | None:intergenic | 35.0% |
| ! | GGGTGAATTGGAAGAAATTT+TGG | - | chr1.1:9180504-9180523 | MS.gene015941:CDS | 35.0% |
| ! | GTAATCTTTTGCCCGTATTT+TGG | - | chr1.1:9181161-9181180 | MS.gene015941:CDS | 35.0% |
| ! | TCAGAAAGAGGTGATGTTTT+TGG | - | chr1.1:9180483-9180502 | MS.gene015941:CDS | 35.0% |
| ! | TCCTTGATCTATAGTTTGCA+TGG | - | chr1.1:9180706-9180725 | MS.gene015941:CDS | 35.0% |
| ! | TCTAGTGCTGGAAATATGAT+GGG | + | chr1.1:9181354-9181373 | None:intergenic | 35.0% |
| ! | TGTTCATCATGGACTATTTC+AGG | - | chr1.1:9181251-9181270 | MS.gene015941:CDS | 35.0% |
| !!! | GGTTGAACTTGTTGATTTTG+TGG | - | chr1.1:9179799-9179818 | MS.gene015941:intron | 35.0% |
| AAGATTTAGGCTTGTGCAAG+GGG | + | chr1.1:9180348-9180367 | None:intergenic | 40.0% | |
| AAGTAGACCCCCAAAGATTT+AGG | + | chr1.1:9180361-9180380 | None:intergenic | 40.0% | |
| ACATCCTTAAATGGCACCAA+CGG | + | chr1.1:9179662-9179681 | None:intergenic | 40.0% | |
| ATCCTATGTTTGATCCTGCT+TGG | - | chr1.1:9179960-9179979 | MS.gene015941:intron | 40.0% | |
| CAAAGATTTAGGCTTGTGCA+AGG | + | chr1.1:9180350-9180369 | None:intergenic | 40.0% | |
| CAGAAAGATGTTCTTGGAGA+TGG | - | chr1.1:9181428-9181447 | MS.gene015941:CDS | 40.0% | |
| CCACCTAATTATAGGGCTAA+TGG | - | chr1.1:9179902-9179921 | MS.gene015941:intron | 40.0% | |
| CCATTAGCCCTATAATTAGG+TGG | + | chr1.1:9179905-9179924 | None:intergenic | 40.0% | |
| CTACACATTGCAAGAATAGC+AGG | + | chr1.1:9179851-9179870 | None:intergenic | 40.0% | |
| CTTGCACAAGCCTAAATCTT+TGG | - | chr1.1:9180348-9180367 | MS.gene015941:intron | 40.0% | |
| GAGATTTGCAGTTGCTTCAT+TGG | - | chr1.1:9180881-9180900 | MS.gene015941:CDS | 40.0% | |
| GGTCGTTGTTCCATAAGAAA+AGG | + | chr1.1:9181290-9181309 | None:intergenic | 40.0% | |
| TAGGGTTTATGGGAAGTTCA+TGG | - | chr1.1:9180150-9180169 | MS.gene015941:intron | 40.0% | |
| TGCACAAGCCTAAATCTTTG+GGG | - | chr1.1:9180350-9180369 | MS.gene015941:intron | 40.0% | |
| TTCAACGTGTCTTGATGCTA+AGG | - | chr1.1:9180027-9180046 | MS.gene015941:intron | 40.0% | |
| TTCAATACCAGAAACCATGC+TGG | + | chr1.1:9179639-9179658 | None:intergenic | 40.0% | |
| TTCTCAGCAACATTCTTACC+AGG | + | chr1.1:9179758-9179777 | None:intergenic | 40.0% | |
| TTCTTAAAACTCCTCGATCC+TGG | - | chr1.1:9181022-9181041 | MS.gene015941:CDS | 40.0% | |
| TTTCACTCCATAGAGATTCC+AGG | + | chr1.1:9181043-9181062 | None:intergenic | 40.0% | |
| ! | AATTACAGGTTTGAGACTGG+CGG | + | chr1.1:9181559-9181578 | None:intergenic | 40.0% |
| ! | ATAGGTTTTCGATGTCTTCC+GGG | + | chr1.1:9179504-9179523 | None:intergenic | 40.0% |
| ! | CTGAAAGGACCCTTTTCTTA+TGG | - | chr1.1:9181277-9181296 | MS.gene015941:CDS | 40.0% |
| ! | CTGAGTTGTTGGAGATTTTC+GGG | - | chr1.1:9180254-9180273 | MS.gene015941:intron | 40.0% |
| ! | GACTATTTCAGGTAGCTGAA+AGG | - | chr1.1:9181262-9181281 | MS.gene015941:CDS | 40.0% |
| ! | GCTGAGTTGTTGGAGATTTT+CGG | - | chr1.1:9180253-9180272 | MS.gene015941:intron | 40.0% |
| ! | TCCAACTTGAGTTTTCAACC+AGG | + | chr1.1:9180939-9180958 | None:intergenic | 40.0% |
| ! | TCCAATTACAGGTTTGAGAC+TGG | + | chr1.1:9181562-9181581 | None:intergenic | 40.0% |
| ! | TTGAGTTTTCAACCAGGCAA+AGG | + | chr1.1:9180933-9180952 | None:intergenic | 40.0% |
| !! | ATTTTCGGGAGTGTGATTAG+TGG | - | chr1.1:9180268-9180287 | MS.gene015941:intron | 40.0% |
| !!! | CTTGTTGATTTTGTGGCTTG+TGG | - | chr1.1:9179806-9179825 | MS.gene015941:intron | 40.0% |
| !!! | GGTGATGTTTTTGGGTGAAT+TGG | - | chr1.1:9180492-9180511 | MS.gene015941:CDS | 40.0% |
| !!! | TCATGGTTCCACTGTTTTTG+CGG | - | chr1.1:9180557-9180576 | MS.gene015941:CDS | 40.0% |
| ACAGTGGAACCATGATCCTT+TGG | + | chr1.1:9180552-9180571 | None:intergenic | 45.0% | |
| CGTGATGAATCAACTCGAGA+CGG | + | chr1.1:9179536-9179555 | None:intergenic | 45.0% | |
| GCACAAGCCTAAATCTTTGG+GGG | - | chr1.1:9180351-9180370 | MS.gene015941:intron | 45.0% | |
| GCCAGTCTCAAACCTGTAAT+TGG | - | chr1.1:9181558-9181577 | MS.gene015941:CDS | 45.0% | |
| GCCTGGTTGAAAACTCAAGT+TGG | - | chr1.1:9180935-9180954 | MS.gene015941:CDS | 45.0% | |
| GGTAGAGTTCCAAAGGATCA+TGG | - | chr1.1:9180540-9180559 | MS.gene015941:CDS | 45.0% | |
| TAACGGGATTGCTGAGTTGT+TGG | - | chr1.1:9180243-9180262 | MS.gene015941:intron | 45.0% | |
| TGGTGCATAGACCCGTTATT+CGG | - | chr1.1:9180170-9180189 | MS.gene015941:intron | 45.0% | |
| ! | GTTTTCAACCAGGCAAAGGA+CGG | + | chr1.1:9180929-9180948 | None:intergenic | 45.0% |
| ! | TAGGTTTTCGATGTCTTCCG+GGG | + | chr1.1:9179503-9179522 | None:intergenic | 45.0% |
| !! | AATGGTGTTGTTGCTAGTGG+TGG | - | chr1.1:9179920-9179939 | MS.gene015941:intron | 45.0% |
| !! | GCTAATGGTGTTGTTGCTAG+TGG | - | chr1.1:9179917-9179936 | MS.gene015941:intron | 45.0% |
| !! | GGTTTCTGGTATTGAACCGT+TGG | - | chr1.1:9179643-9179662 | MS.gene015941:CDS | 45.0% |
| !! | TGAACCGTTGGTGCCATTTA+AGG | - | chr1.1:9179655-9179674 | MS.gene015941:CDS | 45.0% |
| !!! | GTTCCACTGTTTTTGCGGAT+CGG | - | chr1.1:9180562-9180581 | MS.gene015941:CDS | 45.0% |
| !!! | TTCCACTGTTTTTGCGGATC+GGG | - | chr1.1:9180563-9180582 | MS.gene015941:CDS | 45.0% |
| AGCTCGTTTCAACGAAGCAG+CGG | + | chr1.1:9179594-9179613 | None:intergenic | 50.0% | |
| AGTTGCAAATGTGGCCAAGC+AGG | + | chr1.1:9179977-9179996 | None:intergenic | 50.0% | |
| ATACCAGAAACCATGCTGGC+AGG | + | chr1.1:9179635-9179654 | None:intergenic | 50.0% | |
| CCATAGAGATTCCAGGATCG+AGG | + | chr1.1:9181036-9181055 | None:intergenic | 50.0% | |
| CCTCGATCCTGGAATCTCTA+TGG | - | chr1.1:9181033-9181052 | MS.gene015941:CDS | 50.0% | |
| GGCCAAGCAGGATCAAACAT+AGG | + | chr1.1:9179965-9179984 | None:intergenic | 50.0% | |
| TTACAACTGCTGGGTTCCAG+TGG | + | chr1.1:9181392-9181411 | None:intergenic | 50.0% | |
| TTTCCTGCCAGCATGGTTTC+TGG | - | chr1.1:9179629-9179648 | MS.gene015941:CDS | 50.0% | |
| ! | TGATGGGCAGGATCACTTGA+CGG | + | chr1.1:9181338-9181357 | None:intergenic | 50.0% |
| !! | GTGCTGGAAATATGATGGGC+AGG | + | chr1.1:9181350-9181369 | None:intergenic | 50.0% |
| AGAAGCCGAGAAGCGAAAGG+AGG | - | chr1.1:9181512-9181531 | MS.gene015941:CDS | 55.0% | |
| AGCTGTGTTTCCTGCCAGCA+TGG | - | chr1.1:9179622-9179641 | MS.gene015941:CDS | 55.0% | |
| CACCCGATCCGCAAAAACAG+TGG | + | chr1.1:9180568-9180587 | None:intergenic | 55.0% | |
| CCATGCCTCCTTTCGCTTCT+CGG | + | chr1.1:9181520-9181539 | None:intergenic | 55.0% | |
| CTCAGAAGCCGAGAAGCGAA+AGG | - | chr1.1:9181509-9181528 | MS.gene015941:CDS | 55.0% | |
| TCGAGACGGCTCATCCGAAT+AGG | + | chr1.1:9179522-9179541 | None:intergenic | 55.0% | |
| AAAAGCCACCAGCGACCGCA+GGG | - | chr1.1:9179566-9179585 | MS.gene015941:CDS | 60.0% | |
| CCGAGAAGCGAAAGGAGGCA+TGG | - | chr1.1:9181517-9181536 | MS.gene015941:CDS | 60.0% | |
| TAAAAGCCACCAGCGACCGC+AGG | - | chr1.1:9179565-9179584 | MS.gene015941:CDS | 60.0% | |
| TCATCGCACCGTCCTTTGCC+TGG | - | chr1.1:9180918-9180937 | MS.gene015941:CDS | 60.0% | |
| AACGAAGCAGCGGCACCCTG+CGG | + | chr1.1:9179584-9179603 | None:intergenic | 65.0% | |
| ! | CAGCGGCACCCTGCGGTCGC+TGG | + | chr1.1:9179577-9179596 | None:intergenic | 80.0% |
| ! | CGGCACCCTGCGGTCGCTGG+TGG | + | chr1.1:9179574-9179593 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 9179473 | 9181617 | 9179473 | ID=MS.gene015941 |
| chr1.1 | mRNA | 9179473 | 9181617 | 9179473 | ID=MS.gene015941.t1;Parent=MS.gene015941 |
| chr1.1 | exon | 9180478 | 9181617 | 9180478 | ID=MS.gene015941.t1.exon1;Parent=MS.gene015941.t1 |
| chr1.1 | CDS | 9180478 | 9181617 | 9180478 | ID=cds.MS.gene015941.t1;Parent=MS.gene015941.t1 |
| chr1.1 | exon | 9179473 | 9179817 | 9179473 | ID=MS.gene015941.t1.exon2;Parent=MS.gene015941.t1 |
| chr1.1 | CDS | 9179473 | 9179817 | 9179473 | ID=cds.MS.gene015941.t1;Parent=MS.gene015941.t1 |
| Gene Sequence |
| Protein sequence |
