AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016478


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016478.t1 MTR_8g041740 94.567 497 27 0 1 497 1 497 0.0 941
MS.gene016478.t1 MTR_8g045440 91.348 497 43 0 1 497 1 497 0.0 895
MS.gene016478.t1 MTR_8g045463 88.032 493 57 1 7 497 7 499 0.0 860
MS.gene016478.t1 MTR_8g045470 88.032 493 57 1 7 497 7 499 0.0 860
MS.gene016478.t1 MTR_8g045440 93.797 403 25 0 1 403 1 403 0.0 745
MS.gene016478.t1 MTR_5g069620 73.256 86 23 0 38 123 8 93 2.26e-37 132
MS.gene016478.t1 MTR_7g086360 22.189 338 203 11 29 362 61 342 2.69e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016478.t1 AT3G21060 70.842 487 137 3 1 487 1 482 0.0 673

Find 130 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGTGGCATAGTTTATATC+TGG 0.203041 8.2:-59040084 MS.gene016478:CDS
GCTACCACTTCTTCCGAAAA+TGG 0.216044 8.2:+59039663 None:intergenic
AGAAGTGATAGAAGAATATT+TGG 0.247963 8.2:-59042028 MS.gene016478:CDS
AAATATTCTTCTATCACTTC+TGG 0.279839 8.2:+59042030 None:intergenic
CTCTTCATCACCACTGAAAC+AGG 0.280016 8.2:+59040258 None:intergenic
TTCATATCCTTGCAGGTAAA+AGG 0.287426 8.2:-59039876 MS.gene016478:intron
AGTGCTCTAACTTCATCTTT+TGG 0.292327 8.2:+59040406 None:intergenic
CCAGTTCTCAATGTAATCTT+TGG 0.299795 8.2:+59040060 None:intergenic
TTCCTCAATCTCTTTGAAAT+CGG 0.303113 8.2:+59040024 None:intergenic
ACCGATAATGGAGTTGTTCA+TGG 0.343174 8.2:+59042240 None:intergenic
GATGCCACGCTAAATCAATA+AGG 0.351990 8.2:+59040137 None:intergenic
TAGTAAGTTCTTCAAAGATT+GGG 0.363138 8.2:-59039707 MS.gene016478:CDS
ACCGAGGTTCTCGTTAAGTT+TGG 0.366262 8.2:+59040381 None:intergenic
AGGGGAAAACTAACCGATAA+TGG 0.374362 8.2:+59042228 None:intergenic
TTTACTAGCTCGTCTTCATC+CGG 0.374685 8.2:-59040818 MS.gene016478:CDS
TCCTCAATCTCTTTGAAATC+GGG 0.376572 8.2:+59040025 None:intergenic
GGCATGACATTACCTTCAAC+TGG 0.397119 8.2:+59039609 None:intergenic
TTAGTAAGTTCTTCAAAGAT+TGG 0.397157 8.2:-59039708 MS.gene016478:CDS
AATATTCTTCTATCACTTCT+GGG 0.397781 8.2:+59042031 None:intergenic
ATGATGGAAGCTGTGTTGTC+TGG 0.398052 8.2:-59041023 MS.gene016478:CDS
ACTCAAATGATAGAGTTATC+AGG 0.399586 8.2:-59040450 MS.gene016478:CDS
ACCATGAACAACTCCATTAT+CGG 0.399710 8.2:-59042241 MS.gene016478:intron
CTGTCGCGATGTTCCTGAAC+AGG 0.403372 8.2:-59039742 MS.gene016478:CDS
CGTGCCATGGTTCCTATCTC+TGG 0.411940 8.2:-59040529 MS.gene016478:CDS
TTACTAAAACATGCAGCAAT+AGG 0.415676 8.2:+59040625 None:intergenic
GAACACTTGTTGCGTGAGGC+AGG 0.420528 8.2:+59040670 None:intergenic
GTGTTTAAGTCAACAATCAT+TGG 0.420732 8.2:+59040748 None:intergenic
GGTGATGAAGAGTGGGTTGT+TGG 0.425642 8.2:-59040247 MS.gene016478:CDS
GGGCTTCCTTAGGCCCTTCA+AGG 0.426153 8.2:+59040158 None:intergenic
AAAGAAACAGATACAACAAT+TGG 0.427149 8.2:+59040106 None:intergenic
CAAAGAGATTGAGGAAAATG+AGG 0.433376 8.2:-59040017 MS.gene016478:CDS
ACACTTTGACCAACATATAC+TGG 0.434902 8.2:+59040939 None:intergenic
ACTACTGAACCACCAGAGAT+AGG 0.439225 8.2:+59040517 None:intergenic
TGAGGAAAATGAGGAGTATG+TGG 0.443627 8.2:-59040008 MS.gene016478:CDS
TTACTAGCTCGTCTTCATCC+GGG 0.444533 8.2:-59040817 MS.gene016478:CDS
TTGTTGCGTGAGGCAGGGTT+TGG 0.448991 8.2:+59040676 None:intergenic
ATTGTAATTGACAGTAAAGA+TGG 0.450487 8.2:-59040559 MS.gene016478:CDS
GGGATGTCATGAGTGGTAAA+AGG 0.453340 8.2:-59040870 MS.gene016478:CDS
CTGTTCAGGAACATCGCGAC+AGG 0.457264 8.2:+59039743 None:intergenic
GATGAAGACGAGCTAGTAAA+GGG 0.459913 8.2:+59040821 None:intergenic
CCAAAGATTACATTGAGAAC+TGG 0.469225 8.2:-59040060 MS.gene016478:CDS
CTCAAAACCATCTCTCTGCT+TGG 0.473149 8.2:-59040791 MS.gene016478:CDS
GAGAGCACAAGATTTACATA+TGG 0.478073 8.2:-59040207 MS.gene016478:CDS
CGTCGCGGTACCCTTCTTGC+TGG 0.478409 8.2:-59041973 MS.gene016478:intron
TCGGAAGAAGTGGTAGCAAA+TGG 0.478453 8.2:-59039657 MS.gene016478:CDS
GAATCAGCTGGCTGCAATGA+TGG 0.479058 8.2:-59041039 MS.gene016478:intron
CATCTTGTGAAAATCCTTGA+AGG 0.482006 8.2:-59040172 MS.gene016478:CDS
GTTGTATCTGTTTCTTTGAG+TGG 0.483708 8.2:-59040100 MS.gene016478:CDS
TCCCGATTTCAAAGAGATTG+AGG 0.485051 8.2:-59040026 MS.gene016478:CDS
TTTGATTTGAATCCCGAGAC+TGG 0.485568 8.2:-59039971 MS.gene016478:CDS
TTCACATACCTTACCAGTCT+CGG 0.486703 8.2:+59039958 None:intergenic
GTATGGAAACCTGGTTTATG+TGG 0.490370 8.2:-59040602 MS.gene016478:CDS
GAGTGGCATAGTTTATATCT+GGG 0.492751 8.2:-59040083 MS.gene016478:CDS
ATGCAATCACGAAGGTGCAC+TGG 0.494469 8.2:-59040288 MS.gene016478:CDS
GAGAACCTCGGTGATCTAAA+CGG 0.495173 8.2:-59040370 MS.gene016478:CDS
GATGAAGAGTGGGTTGTTGG+TGG 0.500081 8.2:-59040244 MS.gene016478:CDS
ATGCCACGCTAAATCAATAA+GGG 0.511908 8.2:+59040138 None:intergenic
GTTGAGAAGTTGAAGGCTGC+AGG 0.512395 8.2:-59040346 MS.gene016478:CDS
TCACATACCTTACCAGTCTC+GGG 0.512885 8.2:+59039959 None:intergenic
TGACCAACATATACTGGTGA+TGG 0.514154 8.2:+59040945 None:intergenic
CGAGCTAGTAAAGGGGTTTG+CGG 0.516700 8.2:+59040829 None:intergenic
ACATCGCGACAGGGAGATGC+TGG 0.520821 8.2:+59039753 None:intergenic
GAGGCAGGGTTTGGTCCACT+TGG 0.522870 8.2:+59040685 None:intergenic
AAATCAATAAGGGCTTCCTT+AGG 0.523475 8.2:+59040148 None:intergenic
GATACAACAATTGGACGTAC+AGG 0.524448 8.2:+59040115 None:intergenic
GGATGAAGACGAGCTAGTAA+AGG 0.525546 8.2:+59040820 None:intergenic
ATTGGGGACATCAATAACTC+TGG 0.526397 8.2:-59039690 MS.gene016478:CDS
ATATCAGAGTCGCTGAAAGC+AGG 0.527495 8.2:+59039801 None:intergenic
TGAAGAACATTGTATTCAGC+AGG 0.527995 8.2:-59040495 MS.gene016478:CDS
GTTGGTGGTTCTGCTAGTAA+AGG 0.529338 8.2:-59040229 MS.gene016478:CDS
TAGATAACATAGCTCTTCCT+CGG 0.532346 8.2:+59039776 None:intergenic
TAGAAGAATATTTGGAACAT+GGG 0.533699 8.2:-59042020 MS.gene016478:CDS
CATGCCTCAAGTCCAGTTGA+AGG 0.538226 8.2:-59039621 MS.gene016478:CDS
TGATGGAAGCTGTGTTGTCT+GGG 0.542561 8.2:-59041022 MS.gene016478:CDS
TCACGCAACAAGTGTTCTGA+TGG 0.542864 8.2:-59040664 MS.gene016478:CDS
AGTAAGTTCTTCAAAGATTG+GGG 0.545053 8.2:-59039706 MS.gene016478:CDS
AACACTTGTTGCGTGAGGCA+GGG 0.547477 8.2:+59040671 None:intergenic
AGAGAGAGTTACCAGCAAGA+AGG 0.548995 8.2:+59041962 None:intergenic
AAACGGTGTTGAGAAGTTGA+AGG 0.549513 8.2:-59040353 MS.gene016478:CDS
GAGAGAGTTACCAGCAAGAA+GGG 0.549938 8.2:+59041963 None:intergenic
ATGTTCCTGAACAGGAAGAC+AGG 0.551883 8.2:-59039734 MS.gene016478:CDS
AGAGCACAAGATTTACATAT+GGG 0.555323 8.2:-59040206 MS.gene016478:CDS
GAAAATCCTTGAAGGGCCTA+AGG 0.556664 8.2:-59040164 MS.gene016478:CDS
TTTGAATCCCGAGACTGGTA+AGG 0.560789 8.2:-59039966 MS.gene016478:intron
ATTACCTTCAACTGGACTTG+AGG 0.561076 8.2:+59039617 None:intergenic
GTTTCAGTGGTGATGAAGAG+TGG 0.563391 8.2:-59040255 MS.gene016478:CDS
TACTAGCTCGTCTTCATCCG+GGG 0.567258 8.2:-59040816 MS.gene016478:CDS
AAGCTCTTTAGCAATGCCCC+TGG 0.567723 8.2:+59040990 None:intergenic
TACCACTCATGACATCCCAC+AGG 0.572721 8.2:+59040875 None:intergenic
GATTATGAAGATCCGTTGCA+AGG 0.573855 8.2:-59042060 MS.gene016478:intron
AGATGGCGAGGTGCGTGCCA+TGG 0.575964 8.2:-59040542 MS.gene016478:CDS
TGGAAGGCACCCTGTTTCAG+TGG 0.579970 8.2:-59040268 MS.gene016478:CDS
ACATGCAGCAATAGGTGTGA+AGG 0.580009 8.2:+59040633 None:intergenic
ATTTACATATGGGATAGAGC+TGG 0.580981 8.2:-59040196 MS.gene016478:CDS
GGACACGCCAAGCAGAGAGA+TGG 0.582568 8.2:+59040784 None:intergenic
CTCCCATCACCAGTATATGT+TGG 0.587070 8.2:-59040948 MS.gene016478:CDS
TCGAGTTTCCCACATAAACC+AGG 0.588345 8.2:+59040593 None:intergenic
ATAGAAGAATATTTGGAACA+TGG 0.588595 8.2:-59042021 MS.gene016478:CDS
GACCAACATATACTGGTGAT+GGG 0.590282 8.2:+59040946 None:intergenic
TTTCAGTGGTGATGAAGAGT+GGG 0.592635 8.2:-59040254 MS.gene016478:CDS
AACATTGTATTCAGCAGGAA+CGG 0.597939 8.2:-59040490 MS.gene016478:CDS
TGACATTGTGACAGTTGAGA+AGG 0.599139 8.2:-59039826 MS.gene016478:CDS
ATCTTGTGAAAATCCTTGAA+GGG 0.602213 8.2:-59040171 MS.gene016478:CDS
AGATAACATAGCTCTTCCTC+GGG 0.604976 8.2:+59039777 None:intergenic
ATCAGAACACTTGTTGCGTG+AGG 0.606314 8.2:+59040666 None:intergenic
TATGGAAACCTGGTTTATGT+GGG 0.609917 8.2:-59040601 MS.gene016478:CDS
GCCATGGTTCCTATCTCTGG+TGG 0.613251 8.2:-59040526 MS.gene016478:CDS
TGACAAGTCGTTATCCCTGT+GGG 0.614779 8.2:-59040890 MS.gene016478:CDS
CTGACAAGTCGTTATCCCTG+TGG 0.627369 8.2:-59040891 MS.gene016478:CDS
GTTTATGTGGGAAACTCGAA+AGG 0.631466 8.2:-59040589 MS.gene016478:CDS
TGATTGCATCTTGAAACTCA+CGG 0.633891 8.2:+59040302 None:intergenic
ATCATTGGAGCACATGAGAG+AGG 0.635797 8.2:+59040763 None:intergenic
TCTGGGAAATCACCTTGCAA+CGG 0.637632 8.2:+59042048 None:intergenic
TCTTCATCACCACTGAAACA+GGG 0.640101 8.2:+59040259 None:intergenic
TCTGTCTCTGAGAAACCAAG+TGG 0.649281 8.2:-59040700 MS.gene016478:CDS
ACCACTCATGACATCCCACA+GGG 0.650263 8.2:+59040876 None:intergenic
AAGCCCTTATTGATTTAGCG+TGG 0.655079 8.2:-59040141 MS.gene016478:CDS
TGCAGCAATAGGTGTGAAGG+AGG 0.657772 8.2:+59040636 None:intergenic
AATCACGAAGGTGCACTGGA+AGG 0.658692 8.2:-59040284 MS.gene016478:CDS
AGTATATGTTGGTCAAAGTG+TGG 0.660275 8.2:-59040937 MS.gene016478:CDS
CAGCGACTCTGATATGCCCG+AGG 0.663338 8.2:-59039793 MS.gene016478:CDS
TGTTCAGGAACATCGCGACA+GGG 0.664733 8.2:+59039744 None:intergenic
ACCACCAGAGATAGGAACCA+TGG 0.676109 8.2:+59040525 None:intergenic
AATTGACAGTAAAGATGGCG+AGG 0.678617 8.2:-59040554 MS.gene016478:CDS
TCCCTGTGGGATGTCATGAG+TGG 0.693869 8.2:-59040877 MS.gene016478:CDS
TGTATTGCTTTCAATCGTCG+CGG 0.697076 8.2:-59041988 MS.gene016478:CDS
GCCAAACTTAACGAGAACCT+CGG 0.703007 8.2:-59040382 MS.gene016478:CDS
ATGAAGACGAGCTAGTAAAG+GGG 0.710400 8.2:+59040822 None:intergenic
GTTTCAAGATGCAATCACGA+AGG 0.735993 8.2:-59040296 MS.gene016478:CDS
CAACACCGTTTAGATCACCG+AGG 0.770889 8.2:+59040365 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATTAATATTAATTA+TGG - chr8.2:59039740-59039759 MS.gene016478:CDS 0.0%
!!! AATAATAAGTATTGAAAAAT+TGG + chr8.2:59039635-59039654 None:intergenic 10.0%
!!! ATAATAAGTATTGAAAAATT+GGG + chr8.2:59039634-59039653 None:intergenic 10.0%
!!! ATTTTTCAATACTTATTATT+AGG - chr8.2:59039635-59039654 MS.gene016478:CDS 10.0%
!!! TTTTTCAATACTTATTATTA+GGG - chr8.2:59039636-59039655 MS.gene016478:CDS 10.0%
!! TGTAGTTATATCAAATTTAT+AGG - chr8.2:59039972-59039991 MS.gene016478:CDS 15.0%
!!! ACTTTATTTATTTTCATTGT+GGG - chr8.2:59040547-59040566 MS.gene016478:CDS 15.0%
!!! TACTTTATTTATTTTCATTG+TGG - chr8.2:59040546-59040565 MS.gene016478:CDS 15.0%
!! TAAAAAACGTTTAGAAGAAT+AGG + chr8.2:59039673-59039692 None:intergenic 20.0%
!! TGATAAAAAGATTAGAAGAA+CGG + chr8.2:59040389-59040408 None:intergenic 20.0%
!!! GGTATTTTCAAAAAATCATT+AGG - chr8.2:59040267-59040286 MS.gene016478:CDS 20.0%
!!! TTCTTTCATTTTCCATTTTA+TGG - chr8.2:59041918-59041937 MS.gene016478:intron 20.0%
! AAAGAAACAGATACAACAAT+TGG + chr8.2:59041725-59041744 None:intergenic 25.0%
! AAATATTCTTCTATCACTTC+TGG + chr8.2:59039801-59039820 None:intergenic 25.0%
! AATATTCTTCTATCACTTCT+GGG + chr8.2:59039800-59039819 None:intergenic 25.0%
! AGAAGTGATAGAAGAATATT+TGG - chr8.2:59039800-59039819 MS.gene016478:CDS 25.0%
! ATTGTAATTGACAGTAAAGA+TGG - chr8.2:59041269-59041288 MS.gene016478:intron 25.0%
! ATTTGATAAATTGAATCAGC+TGG - chr8.2:59040777-59040796 MS.gene016478:CDS 25.0%
! GTAGTTGACAAAAAAGAAAT+AGG + chr8.2:59040416-59040435 None:intergenic 25.0%
! GTTTGAACCTTATGAATATT+CGG - chr8.2:59040128-59040147 MS.gene016478:CDS 25.0%
! TAAATCTATACCATCGTTAA+TGG + chr8.2:59040339-59040358 None:intergenic 25.0%
! TAAATTTGCATTTGAATGTG+TGG - chr8.2:59040665-59040684 MS.gene016478:CDS 25.0%
! TAGTAAGTTCTTCAAAGATT+GGG - chr8.2:59042121-59042140 MS.gene016478:intron 25.0%
! TTAGTAAGTTCTTCAAAGAT+TGG - chr8.2:59042120-59042139 MS.gene016478:intron 25.0%
! TTTGAACCTTATGAATATTC+GGG - chr8.2:59040129-59040148 MS.gene016478:CDS 25.0%
!! AAATTTATAGGATTTTACCG+AGG - chr8.2:59039984-59040003 MS.gene016478:CDS 25.0%
!! ATAGAAGAATATTTGGAACA+TGG - chr8.2:59039807-59039826 MS.gene016478:CDS 25.0%
!! GTATACTCAGAAAGTTTTTA+CGG + chr8.2:59040529-59040548 None:intergenic 25.0%
!! TAGAAGAATATTTGGAACAT+GGG - chr8.2:59039808-59039827 MS.gene016478:CDS 25.0%
!!! TTTTTTGAAAATACCGAAGT+TGG + chr8.2:59040262-59040281 None:intergenic 25.0%
AAAAATTGGGAGAAGAAAAG+GGG + chr8.2:59039621-59039640 None:intergenic 30.0%
AAACGTTTAGAAGAATAGGA+AGG + chr8.2:59039669-59039688 None:intergenic 30.0%
AAACTCATCTCAAAAGGTTT+AGG + chr8.2:59040438-59040457 None:intergenic 30.0%
ACTCAAATGATAGAGTTATC+AGG - chr8.2:59041378-59041397 MS.gene016478:intron 30.0%
AGAGCACAAGATTTACATAT+GGG - chr8.2:59041622-59041641 MS.gene016478:intron 30.0%
AGTAAGTTCTTCAAAGATTG+GGG - chr8.2:59042122-59042141 MS.gene016478:intron 30.0%
ATCTTGTGAAAATCCTTGAA+GGG - chr8.2:59041657-59041676 MS.gene016478:intron 30.0%
CTTAGTCATGTTTATGACAA+TGG - chr8.2:59040198-59040217 MS.gene016478:CDS 30.0%
GAAAAATTGGGAGAAGAAAA+GGG + chr8.2:59039622-59039641 None:intergenic 30.0%
GTGTTTAAGTCAACAATCAT+TGG + chr8.2:59041083-59041102 None:intergenic 30.0%
TAAGGTATGTGAACGTTATA+TGG - chr8.2:59041880-59041899 MS.gene016478:intron 30.0%
TGAAAAATTGGGAGAAGAAA+AGG + chr8.2:59039623-59039642 None:intergenic 30.0%
TTACTAAAACATGCAGCAAT+AGG + chr8.2:59041206-59041225 None:intergenic 30.0%
TTAGGCTGTAAACATTCAAA+TGG - chr8.2:59040285-59040304 MS.gene016478:CDS 30.0%
TTAGTGAGTGTATATCTTTC+TGG - chr8.2:59040591-59040610 MS.gene016478:CDS 30.0%
! TTTTAGTAAGTATGGAAACC+TGG - chr8.2:59041217-59041236 MS.gene016478:intron 30.0%
!! AGAGATTTGTTCTCGTTTTA+CGG - chr8.2:59040232-59040251 MS.gene016478:CDS 30.0%
!! TAGTTGGTTTGGAAAGAATT+AGG - chr8.2:59039936-59039955 MS.gene016478:intron 30.0%
!! TTCCTCAATCTCTTTGAAAT+CGG + chr8.2:59041807-59041826 None:intergenic 30.0%
!!! TAAACCTTTTGAGATGAGTT+TGG - chr8.2:59040437-59040456 MS.gene016478:CDS 30.0%
AAATCAATAAGGGCTTCCTT+AGG + chr8.2:59041683-59041702 None:intergenic 35.0%
AACATTGTATTCAGCAGGAA+CGG - chr8.2:59041338-59041357 MS.gene016478:intron 35.0%
ACACTTTGACCAACATATAC+TGG + chr8.2:59040892-59040911 None:intergenic 35.0%
ACTTGGTTGAGACCATAAAA+TGG + chr8.2:59041933-59041952 None:intergenic 35.0%
AGTAACATGAGTGAGAAAGT+TGG + chr8.2:59040755-59040774 None:intergenic 35.0%
AGTATATGTTGGTCAAAGTG+TGG - chr8.2:59040891-59040910 MS.gene016478:CDS 35.0%
ATGCCACGCTAAATCAATAA+GGG + chr8.2:59041693-59041712 None:intergenic 35.0%
ATTTACATATGGGATAGAGC+TGG - chr8.2:59041632-59041651 MS.gene016478:intron 35.0%
CAAAGAGATTGAGGAAAATG+AGG - chr8.2:59041811-59041830 MS.gene016478:intron 35.0%
CAGAAACCCGAATATTCATA+AGG + chr8.2:59040138-59040157 None:intergenic 35.0%
CATCTTGTGAAAATCCTTGA+AGG - chr8.2:59041656-59041675 MS.gene016478:intron 35.0%
CCAAAGATTACATTGAGAAC+TGG - chr8.2:59041768-59041787 MS.gene016478:intron 35.0%
CCAGTTCTCAATGTAATCTT+TGG + chr8.2:59041771-59041790 None:intergenic 35.0%
GAGTGGCATAGTTTATATCT+GGG - chr8.2:59041745-59041764 MS.gene016478:intron 35.0%
TACTGTGACAGCAACAATAA+TGG - chr8.2:59040106-59040125 MS.gene016478:CDS 35.0%
TAGATAACATAGCTCTTCCT+CGG + chr8.2:59042055-59042074 None:intergenic 35.0%
TATGGAAACCTGGTTTATGT+GGG - chr8.2:59041227-59041246 MS.gene016478:intron 35.0%
TCATTGTGGGATTAGATTTC+AGG - chr8.2:59040560-59040579 MS.gene016478:CDS 35.0%
TGAAGAACATTGTATTCAGC+AGG - chr8.2:59041333-59041352 MS.gene016478:intron 35.0%
TGAGTGGCATAGTTTATATC+TGG - chr8.2:59041744-59041763 MS.gene016478:intron 35.0%
TGATTGCATCTTGAAACTCA+CGG + chr8.2:59041529-59041548 None:intergenic 35.0%
TTCATATCCTTGCAGGTAAA+AGG - chr8.2:59041952-59041971 MS.gene016478:intron 35.0%
TTCTGTGATACCATTAACGA+TGG - chr8.2:59040326-59040345 MS.gene016478:CDS 35.0%
TTGACCAAACTCATCTCAAA+AGG + chr8.2:59040444-59040463 None:intergenic 35.0%
TTGCATTTGAATGTGTGGAT+TGG - chr8.2:59040670-59040689 MS.gene016478:CDS 35.0%
! AGTGCTCTAACTTCATCTTT+TGG + chr8.2:59041425-59041444 None:intergenic 35.0%
! GAGAGCACAAGATTTACATA+TGG - chr8.2:59041621-59041640 MS.gene016478:intron 35.0%
! GTTGTATCTGTTTCTTTGAG+TGG - chr8.2:59041728-59041747 MS.gene016478:intron 35.0%
! GTTTTACGGTAATCCAACTT+CGG - chr8.2:59040246-59040265 MS.gene016478:CDS 35.0%
! TAACTCTGGATCACCATTTT+CGG - chr8.2:59042152-59042171 MS.gene016478:intron 35.0%
! TTTTACCGAGGTTTATGTTG+TGG - chr8.2:59039996-59040015 MS.gene016478:CDS 35.0%
!! TCCTCAATCTCTTTGAAATC+GGG + chr8.2:59041806-59041825 None:intergenic 35.0%
!!! GCTGCATGTTTTAGTAAGTA+TGG - chr8.2:59041209-59041228 MS.gene016478:intron 35.0%
AAAAACCTGTCTTCCTGTTC+AGG + chr8.2:59042102-59042121 None:intergenic 40.0%
AACCAAGTTCATATCCTTGC+AGG - chr8.2:59041945-59041964 MS.gene016478:intron 40.0%
AATTGACAGTAAAGATGGCG+AGG - chr8.2:59041274-59041293 MS.gene016478:intron 40.0%
AGATAACATAGCTCTTCCTC+GGG + chr8.2:59042054-59042073 None:intergenic 40.0%
AGGGGAAAACTAACCGATAA+TGG + chr8.2:59039603-59039622 None:intergenic 40.0%
ATGAAGACGAGCTAGTAAAG+GGG + chr8.2:59041009-59041028 None:intergenic 40.0%
ATTACCTTCAACTGGACTTG+AGG + chr8.2:59042214-59042233 None:intergenic 40.0%
ATTGGGGACATCAATAACTC+TGG - chr8.2:59042138-59042157 MS.gene016478:intron 40.0%
CTTCACATCGTTGAGAATTG+TGG - chr8.2:59040032-59040051 MS.gene016478:CDS 40.0%
GACCAACATATACTGGTGAT+GGG + chr8.2:59040885-59040904 None:intergenic 40.0%
GATACAACAATTGGACGTAC+AGG + chr8.2:59041716-59041735 None:intergenic 40.0%
GATGAAGACGAGCTAGTAAA+GGG + chr8.2:59041010-59041029 None:intergenic 40.0%
GATGCCACGCTAAATCAATA+AGG + chr8.2:59041694-59041713 None:intergenic 40.0%
GATTATGAAGATCCGTTGCA+AGG - chr8.2:59039768-59039787 MS.gene016478:CDS 40.0%
GGGTTTCTGCTTATGATTGT+GGG - chr8.2:59040149-59040168 MS.gene016478:CDS 40.0%
GTATGGAAACCTGGTTTATG+TGG - chr8.2:59041226-59041245 MS.gene016478:intron 40.0%
GTTTATGTGGGAAACTCGAA+AGG - chr8.2:59041239-59041258 MS.gene016478:intron 40.0%
GTTTCAAGATGCAATCACGA+AGG - chr8.2:59041532-59041551 MS.gene016478:intron 40.0%
TACCTGCAAGGATATGAACT+TGG + chr8.2:59041950-59041969 None:intergenic 40.0%
TCCCGATTTCAAAGAGATTG+AGG - chr8.2:59041802-59041821 MS.gene016478:intron 40.0%
TCTTCATCACCACTGAAACA+GGG + chr8.2:59041572-59041591 None:intergenic 40.0%
TGACATTGTGACAGTTGAGA+AGG - chr8.2:59042002-59042021 MS.gene016478:CDS 40.0%
TGACCAACATATACTGGTGA+TGG + chr8.2:59040886-59040905 None:intergenic 40.0%
TGTATTGCTTTCAATCGTCG+CGG - chr8.2:59039840-59039859 MS.gene016478:CDS 40.0%
TTCACATACCTTACCAGTCT+CGG + chr8.2:59041873-59041892 None:intergenic 40.0%
TTCCAAACCAACTACAGCAA+GGG + chr8.2:59039930-59039949 None:intergenic 40.0%
TTGTGGGATTAGATTTCAGG+AGG - chr8.2:59040563-59040582 MS.gene016478:CDS 40.0%
TTTACTAGCTCGTCTTCATC+CGG - chr8.2:59041010-59041029 MS.gene016478:CDS 40.0%
TTTCCAAACCAACTACAGCA+AGG + chr8.2:59039931-59039950 None:intergenic 40.0%
! AAACGGTGTTGAGAAGTTGA+AGG - chr8.2:59041475-59041494 MS.gene016478:intron 40.0%
! ATCACCATTTTCGGAAGAAG+TGG - chr8.2:59042161-59042180 MS.gene016478:intron 40.0%
! ATCAGATCCTTTTACCTGCA+AGG + chr8.2:59041962-59041981 None:intergenic 40.0%
! CAAAATACCCTTGCTGTAGT+TGG - chr8.2:59039920-59039939 MS.gene016478:intron 40.0%
! GCTCTAACTTCATCTTTTGG+AGG + chr8.2:59041422-59041441 None:intergenic 40.0%
! TGAGGAAAATGAGGAGTATG+TGG - chr8.2:59041820-59041839 MS.gene016478:intron 40.0%
! TTTCAGTGGTGATGAAGAGT+GGG - chr8.2:59041574-59041593 MS.gene016478:intron 40.0%
!! AAGCCCTTATTGATTTAGCG+TGG - chr8.2:59041687-59041706 MS.gene016478:intron 40.0%
!! TTTGATTTGAATCCCGAGAC+TGG - chr8.2:59041857-59041876 MS.gene016478:intron 40.0%
!!! CAACTACAGCAAGGGTATTT+TGG + chr8.2:59039922-59039941 None:intergenic 40.0%
!!! TGTCTGGGATTTTGAAACCA+GGG - chr8.2:59040821-59040840 MS.gene016478:CDS 40.0%
!!! TTGTCTGGGATTTTGAAACC+AGG - chr8.2:59040820-59040839 MS.gene016478:CDS 40.0%
ACATGCAGCAATAGGTGTGA+AGG + chr8.2:59041198-59041217 None:intergenic 45.0%
ACCGAGGTTCTCGTTAAGTT+TGG + chr8.2:59041450-59041469 None:intergenic 45.0%
ACTACTGAACCACCAGAGAT+AGG + chr8.2:59041314-59041333 None:intergenic 45.0%
AGAGAGAGTTACCAGCAAGA+AGG + chr8.2:59039869-59039888 None:intergenic 45.0%
ATATCAGAGTCGCTGAAAGC+AGG + chr8.2:59042030-59042049 None:intergenic 45.0%
ATCATTGGAGCACATGAGAG+AGG + chr8.2:59041068-59041087 None:intergenic 45.0%
ATGTTCCTGAACAGGAAGAC+AGG - chr8.2:59042094-59042113 MS.gene016478:intron 45.0%
CGCAACCACAACATAAACCT+CGG + chr8.2:59040004-59040023 None:intergenic 45.0%
CGGGTTTCTGCTTATGATTG+TGG - chr8.2:59040148-59040167 MS.gene016478:CDS 45.0%
CTCAAAACCATCTCTCTGCT+TGG - chr8.2:59041037-59041056 MS.gene016478:intron 45.0%
CTCCCATCACCAGTATATGT+TGG - chr8.2:59040880-59040899 MS.gene016478:CDS 45.0%
CTCTTCATCACCACTGAAAC+AGG + chr8.2:59041573-59041592 None:intergenic 45.0%
GAAAATCCTTGAAGGGCCTA+AGG - chr8.2:59041664-59041683 MS.gene016478:intron 45.0%
GAGAACCTCGGTGATCTAAA+CGG - chr8.2:59041458-59041477 MS.gene016478:intron 45.0%
GAGAGAGTTACCAGCAAGAA+GGG + chr8.2:59039868-59039887 None:intergenic 45.0%
GCCAAACTTAACGAGAACCT+CGG - chr8.2:59041446-59041465 MS.gene016478:intron 45.0%
GCTACCACTTCTTCCGAAAA+TGG + chr8.2:59042168-59042187 None:intergenic 45.0%
GGATGAAGACGAGCTAGTAA+AGG + chr8.2:59041011-59041030 None:intergenic 45.0%
GGCATGACATTACCTTCAAC+TGG + chr8.2:59042222-59042241 None:intergenic 45.0%
GGGATGTCATGAGTGGTAAA+AGG - chr8.2:59040958-59040977 MS.gene016478:CDS 45.0%
GGTTTATGTTGTGGTTGCGT+CGG - chr8.2:59040005-59040024 MS.gene016478:CDS 45.0%
TCACATACCTTACCAGTCTC+GGG + chr8.2:59041872-59041891 None:intergenic 45.0%
TCACGCAACAAGTGTTCTGA+TGG - chr8.2:59041164-59041183 MS.gene016478:intron 45.0%
TCGAGTTTCCCACATAAACC+AGG + chr8.2:59041238-59041257 None:intergenic 45.0%
TCGGAAGAAGTGGTAGCAAA+TGG - chr8.2:59042171-59042190 MS.gene016478:intron 45.0%
TCTGGGAAATCACCTTGCAA+CGG + chr8.2:59039783-59039802 None:intergenic 45.0%
TGACAAGTCGTTATCCCTGT+GGG - chr8.2:59040938-59040957 MS.gene016478:CDS 45.0%
TGATGGAAGCTGTGTTGTCT+GGG - chr8.2:59040806-59040825 MS.gene016478:CDS 45.0%
TTACTAGCTCGTCTTCATCC+GGG - chr8.2:59041011-59041030 MS.gene016478:CDS 45.0%
TTTGAATCCCGAGACTGGTA+AGG - chr8.2:59041862-59041881 MS.gene016478:intron 45.0%
! ATCAGAACACTTGTTGCGTG+AGG + chr8.2:59041165-59041184 None:intergenic 45.0%
! ATGATGGAAGCTGTGTTGTC+TGG - chr8.2:59040805-59040824 MS.gene016478:CDS 45.0%
! GTTTCAGTGGTGATGAAGAG+TGG - chr8.2:59041573-59041592 MS.gene016478:intron 45.0%
! TACCCTTGCTGTAGTTGGTT+TGG - chr8.2:59039925-59039944 MS.gene016478:intron 45.0%
! TCTGTCTCTGAGAAACCAAG+TGG - chr8.2:59041128-59041147 MS.gene016478:intron 45.0%
!! CAAGCAGAGAGATGGTTTTG+AGG + chr8.2:59041039-59041058 None:intergenic 45.0%
!! GTTGGTGGTTCTGCTAGTAA+AGG - chr8.2:59041599-59041618 MS.gene016478:intron 45.0%
!!! GTCTGGGATTTTGAAACCAG+GGG - chr8.2:59040822-59040841 MS.gene016478:CDS 45.0%
AAGCTCTTTAGCAATGCCCC+TGG + chr8.2:59040841-59040860 None:intergenic 50.0%
ACCACCAGAGATAGGAACCA+TGG + chr8.2:59041306-59041325 None:intergenic 50.0%
ACCACTCATGACATCCCACA+GGG + chr8.2:59040955-59040974 None:intergenic 50.0%
ATTGTGGTCGAATGACGCAG+TGG - chr8.2:59040048-59040067 MS.gene016478:CDS 50.0%
CAACACCGTTTAGATCACCG+AGG + chr8.2:59041466-59041485 None:intergenic 50.0%
CATGCCTCAAGTCCAGTTGA+AGG - chr8.2:59042207-59042226 MS.gene016478:intron 50.0%
CGAGCTAGTAAAGGGGTTTG+CGG + chr8.2:59041002-59041021 None:intergenic 50.0%
CTGACAAGTCGTTATCCCTG+TGG - chr8.2:59040937-59040956 MS.gene016478:CDS 50.0%
GAATCAGCTGGCTGCAATGA+TGG - chr8.2:59040789-59040808 MS.gene016478:CDS 50.0%
GTTGAGAAGTTGAAGGCTGC+AGG - chr8.2:59041482-59041501 MS.gene016478:intron 50.0%
TACCACTCATGACATCCCAC+AGG + chr8.2:59040956-59040975 None:intergenic 50.0%
TACTAGCTCGTCTTCATCCG+GGG - chr8.2:59041012-59041031 MS.gene016478:CDS 50.0%
TGCAGCAATAGGTGTGAAGG+AGG + chr8.2:59041195-59041214 None:intergenic 50.0%
TGTTCAGGAACATCGCGACA+GGG + chr8.2:59042087-59042106 None:intergenic 50.0%
! AACACTTGTTGCGTGAGGCA+GGG + chr8.2:59041160-59041179 None:intergenic 50.0%
! AATCACGAAGGTGCACTGGA+AGG - chr8.2:59041544-59041563 MS.gene016478:intron 50.0%
! ATGCAATCACGAAGGTGCAC+TGG - chr8.2:59041540-59041559 MS.gene016478:intron 50.0%
!! GATGAAGAGTGGGTTGTTGG+TGG - chr8.2:59041584-59041603 MS.gene016478:intron 50.0%
!! GGTGATGAAGAGTGGGTTGT+TGG - chr8.2:59041581-59041600 MS.gene016478:intron 50.0%
!!! AGAGATGGTTTTGAGGACCC+CGG + chr8.2:59041032-59041051 None:intergenic 50.0%
ATGACGCAGTGGCGTTGCAA+TGG - chr8.2:59040059-59040078 MS.gene016478:CDS 55.0%
CGTGCCATGGTTCCTATCTC+TGG - chr8.2:59041299-59041318 MS.gene016478:intron 55.0%
CTGTCGCGATGTTCCTGAAC+AGG - chr8.2:59042086-59042105 MS.gene016478:intron 55.0%
CTGTTCAGGAACATCGCGAC+AGG + chr8.2:59042088-59042107 None:intergenic 55.0%
GCCATGGTTCCTATCTCTGG+TGG - chr8.2:59041302-59041321 MS.gene016478:intron 55.0%
TCCCTGTGGGATGTCATGAG+TGG - chr8.2:59040951-59040970 MS.gene016478:CDS 55.0%
TTGTTGCGTGAGGCAGGGTT+TGG + chr8.2:59041155-59041174 None:intergenic 55.0%
! GAACACTTGTTGCGTGAGGC+AGG + chr8.2:59041161-59041180 None:intergenic 55.0%
!! TGGAAGGCACCCTGTTTCAG+TGG - chr8.2:59041560-59041579 MS.gene016478:intron 55.0%
ACATCGCGACAGGGAGATGC+TGG + chr8.2:59042078-59042097 None:intergenic 60.0%
CAGCGACTCTGATATGCCCG+AGG - chr8.2:59042035-59042054 MS.gene016478:CDS 60.0%
GGACACGCCAAGCAGAGAGA+TGG + chr8.2:59041047-59041066 None:intergenic 60.0%
GGGCTTCCTTAGGCCCTTCA+AGG + chr8.2:59041673-59041692 None:intergenic 60.0%
! GAGGCAGGGTTTGGTCCACT+TGG + chr8.2:59041146-59041165 None:intergenic 60.0%
AGATGGCGAGGTGCGTGCCA+TGG - chr8.2:59041286-59041305 MS.gene016478:intron 65.0%
CGTCGCGGTACCCTTCTTGC+TGG - chr8.2:59039855-59039874 MS.gene016478:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 59039590 59042260 59039590 ID=MS.gene016478
chr8.2 mRNA 59039590 59042260 59039590 ID=MS.gene016478.t1;Parent=MS.gene016478
chr8.2 exon 59042242 59042260 59042242 ID=MS.gene016478.t1.exon1;Parent=MS.gene016478.t1
chr8.2 CDS 59042242 59042260 59042242 ID=cds.MS.gene016478.t1;Parent=MS.gene016478.t1
chr8.2 exon 59041974 59042072 59041974 ID=MS.gene016478.t1.exon2;Parent=MS.gene016478.t1
chr8.2 CDS 59041974 59042072 59041974 ID=cds.MS.gene016478.t1;Parent=MS.gene016478.t1
chr8.2 exon 59039967 59041054 59039967 ID=MS.gene016478.t1.exon3;Parent=MS.gene016478.t1
chr8.2 CDS 59039967 59041054 59039967 ID=cds.MS.gene016478.t1;Parent=MS.gene016478.t1
chr8.2 exon 59039590 59039883 59039590 ID=MS.gene016478.t1.exon4;Parent=MS.gene016478.t1
chr8.2 CDS 59039590 59039883 59039590 ID=cds.MS.gene016478.t1;Parent=MS.gene016478.t1
Gene Sequence

>MS.gene016478

ATGAACAACTCCATTATCGGTTAGTTTTCCCCTTTTCTTCTCCCAATTTTTCAATACTTATTATTAGGGCACAATTCCTTCCTATTCTTCTAAACGTTTTTTAATTTCTAGTTAATTTCGTTATTATTTTTATGCTAAGTTCTGATAATGTTATTAATTAATATTAATTATGGTTTTCGATTATGAAGATCCGTTGCAAGGTGATTTCCCAGAAGTGATAGAAGAATATTTGGAACATGGGATTATGAAATGTATTGCTTTCAATCGTCGCGGTACCCTTCTTGCTGGTAACTCTCTCTGTCTTTTTCATACATTGTGTATTTCAGTGACCAAAATACCCTTGCTGTAGTTGGTTTGGAAAGAATTAGGTTTAATTTTATGTTGTAGTTATATCAAATTTATAGGATTTTACCGAGGTTTATGTTGTGGTTGCGTCGGAATTCTTCACATCGTTGAGAATTGTGGTCGAATGACGCAGTGGCGTTGCAATGGCAGACGCATCAAAATATTTGATGTTACTGTGACAGCAACAATAATGGTTTGAACCTTATGAATATTCGGGTTTCTGCTTATGATTGTGGGAGTCTGTGTTTGAATTCTAGTTGATGCTTAGTCATGTTTATGACAATGGTAATTAATTGAAGAGATTTGTTCTCGTTTTACGGTAATCCAACTTCGGTATTTTCAAAAAATCATTAGGCTGTAAACATTCAAATGGTTATAATGCATTGCACTGTTCTGTGATACCATTAACGATGGTATAGATTTATAAGTGTGAATTCATACTTGAAATTGTCCGTTCTTCTAATCTTTTTATCATTTGCCTATTTCTTTTTTGTCAACTACCTAAACCTTTTGAGATGAGTTTGGTCAACACGTATGTGTGTTGCATGTAATTTATTTAGAAAAGAAAAATTTAGCGCTTTCAAGTATTTACCGTAAAAACTTTCTGAGTATACTTTATTTATTTTCATTGTGGGATTAGATTTCAGGAGGTAATATTAGTGAGTGTATATCTTTCTGGTCAACACGTTTTTTTTTATTTTTATTTTTTTTACTTTGAAGCATATATGCTTAAATTTGCATTTGAATGTGTGGATTGGATTAAAATATAGCATGTGTTGCTCTTTTATGAATTATTTACTCAACGTATTCTACATTACCAACTTTCTCACTCATGTTACTTGATTTGATAAATTGAATCAGCTGGCTGCAATGATGGAAGCTGTGTTGTCTGGGATTTTGAAACCAGGGGCATTGCTAAAGAGCTTCGAGATAATGAATGTTCTTCTCCCATCACCAGTATATGTTGGTCAAAGTGTGGCAATCGAATTCTTGTATCTGCTGCTGACAAGTCGTTATCCCTGTGGGATGTCATGAGTGGTAAAAGGATAACAAGAAGAGTTTTGCCGCAAACCCCTTTACTAGCTCGTCTTCATCCGGGGTCCTCAAAACCATCTCTCTGCTTGGCGTGTCCTCTCTCATGTGCTCCAATGATTGTTGACTTAAACACTGAAAATACAACTTATCTTCAAGTTTCTGTCTCTGAGAAACCAAGTGGACCAAACCCTGCCTCACGCAACAAGTGTTCTGATGGAAGTACCTCCTTCACACCTATTGCTGCATGTTTTAGTAAGTATGGAAACCTGGTTTATGTGGGAAACTCGAAAGGTGAAATTATTGTAATTGACAGTAAAGATGGCGAGGTGCGTGCCATGGTTCCTATCTCTGGTGGTTCAGTAGTGAAGAACATTGTATTCAGCAGGAACGGACAGTATCTTCTAACAAACTCAAATGATAGAGTTATCAGGATCTATGAAAATCTTCTTCCTCCAAAAGATGAAGTTAGAGCACTAGCCAAACTTAACGAGAACCTCGGTGATCTAAACGGTGTTGAGAAGTTGAAGGCTGCAGGATCAAAATGTTTAACTTTGTTCCGTGAGTTTCAAGATGCAATCACGAAGGTGCACTGGAAGGCACCCTGTTTCAGTGGTGATGAAGAGTGGGTTGTTGGTGGTTCTGCTAGTAAAGGAGAGCACAAGATTTACATATGGGATAGAGCTGGACATCTTGTGAAAATCCTTGAAGGGCCTAAGGAAGCCCTTATTGATTTAGCGTGGCATCCTGTACGTCCAATTGTTGTATCTGTTTCTTTGAGTGGCATAGTTTATATCTGGGCCAAAGATTACATTGAGAACTGGAGTGCTTTTGCTCCCGATTTCAAAGAGATTGAGGAAAATGAGGAGTATGTGGAGCGAGAAGATGAATTTGATTTGAATCCCGAGACTGGTAAGGTATGTGAACGTTATATGGTCATAGTACTAACTATTCTTTCATTTTCCATTTTATGGTCTCAACCAAGTTCATATCCTTGCAGGTAAAAGGATCTGATGTCAATGAAGACGACGACGTTGACATTGTGACAGTTGAGAAGGATCCTGCTTTCAGCGACTCTGATATGCCCGAGGAAGAGCTATGTTATCTACCAGCATCTCCCTGTCGCGATGTTCCTGAACAGGAAGACAGGTTTTTAGTAAGTTCTTCAAAGATTGGGGACATCAATAACTCTGGATCACCATTTTCGGAAGAAGTGGTAGCAAATGGACATATGATGAGTCATGCCTCAAGTCCAGTTGAAGGTAATGTCATGCCATTCAAAATATGCTTGTAA

Protein sequence

>MS.gene016478.t1

MNNSIIDPLQGDFPEVIEEYLEHGIMKCIAFNRRGTLLAAGCNDGSCVVWDFETRGIAKELRDNECSSPITSICWSKCGNRILVSAADKSLSLWDVMSGKRITRRVLPQTPLLARLHPGSSKPSLCLACPLSCAPMIVDLNTENTTYLQVSVSEKPSGPNPASRNKCSDGSTSFTPIAACFSKYGNLVYVGNSKGEIIVIDSKDGEVRAMVPISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEVRALAKLNENLGDLNGVEKLKAAGSKCLTLFREFQDAITKVHWKAPCFSGDEEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLSGIVYIWAKDYIENWSAFAPDFKEIEENEEYVEREDEFDLNPETGKVKGSDVNEDDDVDIVTVEKDPAFSDSDMPEEELCYLPASPCRDVPEQEDRFLVSSSKIGDINNSGSPFSEEVVANGHMMSHASSPVEGNVMPFKICL