AlfalfaGEDB | MS.gene90863

M. sativa cultivar XinJiangDaYe / MS.gene90863

KEGG: K11373
GO: GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF04762.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90863.t1	XP_013470430.1	97.1	1322	38	0	1	1322	1	1322	0.00E+00	2527.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90863.t1	Q9FNA4	58.0	1331	535	11	1	1320	1	1318	0.0e+00	1483.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90863.t1	A0A072VSS4	97.1	1322	38	0	1	1322	1	1322	0.0e+00	2527.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene90863	0.801911	7.20E-49	-1.69E-46
MS.gene049207	MS.gene90863	0.851737	7.30E-61	-1.69E-46
MS.gene049283	MS.gene90863	0.819304	1.25E-52	-1.69E-46
MS.gene049666	MS.gene90863	0.826632	2.44E-54	-1.69E-46
MS.gene049824	MS.gene90863	0.856224	3.72E-62	-1.69E-46
MS.gene049825	MS.gene90863	0.821668	3.57E-53	-1.69E-46
MS.gene049873	MS.gene90863	0.804902	1.73E-49	-1.69E-46
MS.gene050427	MS.gene90863	0.808297	3.32E-50	-1.69E-46
MS.gene050885	MS.gene90863	0.857073	2.09E-62	-1.69E-46
MS.gene050945	MS.gene90863	0.854199	1.44E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011065	MS.gene90863	PPI
MS.gene015202	MS.gene90863	PPI
MS.gene015206	MS.gene90863	PPI
MS.gene016334	MS.gene90863	PPI
MS.gene016478	MS.gene90863	PPI
MS.gene024821	MS.gene90863	PPI
MS.gene026677	MS.gene90863	PPI
MS.gene029611	MS.gene90863	PPI
MS.gene058069	MS.gene90863	PPI
MS.gene058388	MS.gene90863	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90863.t1	MTR_1g115300	97.277	1322	36	0	1	1322	1	1322	0.0	2665
MS.gene90863.t1	MTR_1g115300	97.302	1149	31	0	174	1322	1	1149	0.0	2315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90863.t1	AT5G13680	58.458	1336	521	14	1	1320	1	1318	0.0	1547

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Find 283 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCCTGGATTACTG+TGG	0.690388	1.4:+87422413	MS.gene90863:CDS
AAACACTGTTTCAGTATGAG+AGG	0.584971	1.4:-87420521	None:intergenic
AAACGAGTATGCACATACTT+TGG	0.480825	1.4:+87424088	MS.gene90863:CDS
AAACTTGGGAAGAACTAGAG+GGG	0.708599	1.4:+87420479	MS.gene90863:CDS
AAACTTTCAATTGTCTCAGA+TGG	0.522114	1.4:+87424022	MS.gene90863:CDS
AAAGCATCTTCAAGTAATGG+AGG	0.600148	1.4:-87421738	None:intergenic
AAATGCAGCTAACTGGTTCT+TGG	0.362564	1.4:-87420413	None:intergenic
AAATTACCCCATAGACAACA+AGG	0.668564	1.4:+87421614	MS.gene90863:CDS
AAATTTATTAATTTCTGCAA+GGG	0.541462	1.4:+87422454	MS.gene90863:CDS
AACATCTCCACAGTAATCCA+GGG	0.635223	1.4:-87422420	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTAGGTAAAATTGAAC+AGG	-	chr1.4:87423457-87423476	None:intergenic	30.0%
AAACTTTCAATTGTCTCAGA+TGG	+	chr1.4:87424022-87424041	MS.gene90863:CDS	30.0%
AAATATTATCCAGACTTGGA+CGG	-	chr1.4:87423337-87423356	None:intergenic	30.0%
AGTAAAAAGTTGAAGAGACA+AGG	-	chr1.4:87422135-87422154	None:intergenic	30.0%
AGTATCTAATTTCATGCTTC+AGG	-	chr1.4:87420135-87420154	None:intergenic	30.0%
AGTTGAAGGTGATTTATGTT+TGG	+	chr1.4:87418748-87418767	MS.gene90863:intron	30.0%
ATCACGGAAACTTAAGATTT+GGG	+	chr1.4:87419802-87419821	MS.gene90863:CDS	30.0%
ATCATCATAATAAGAATCGC+CGG	-	chr1.4:87422075-87422094	None:intergenic	30.0%
ATTAATTTCTGCAAGGGATT+GGG	+	chr1.4:87422460-87422479	MS.gene90863:CDS	30.0%
ATTGCTACACAAAAAATCTC+AGG	-	chr1.4:87423770-87423789	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	87418139	87424196	87418139	ID=MS.gene90863
chr1.4	mRNA	87418139	87424196	87418139	ID=MS.gene90863.t1;Parent=MS.gene90863
chr1.4	exon	87418139	87418643	87418139	ID=MS.gene90863.t1.exon1;Parent=MS.gene90863.t1
chr1.4	CDS	87418139	87418643	87418139	ID=cds.MS.gene90863.t1;Parent=MS.gene90863.t1
chr1.4	exon	87419714	87422759	87419714	ID=MS.gene90863.t1.exon2;Parent=MS.gene90863.t1
chr1.4	CDS	87419714	87422759	87419714	ID=cds.MS.gene90863.t1;Parent=MS.gene90863.t1
chr1.4	exon	87423659	87423757	87423659	ID=MS.gene90863.t1.exon3;Parent=MS.gene90863.t1
chr1.4	CDS	87423659	87423757	87423659	ID=cds.MS.gene90863.t1;Parent=MS.gene90863.t1
chr1.4	exon	87423878	87424196	87423878	ID=MS.gene90863.t1.exon4;Parent=MS.gene90863.t1
chr1.4	CDS	87423878	87424196	87423878	ID=cds.MS.gene90863.t1;Parent=MS.gene90863.t1

Gene Sequence

>MS.gene90863

ATGAAAAACCTAAAACTCTTCCGTGAAGTTCCTTTACTTCTCCGATTAAACTCCGACGACGAAACTTTCCGATTCTCCGCCTTAGACATCGAACGCAACCGTCTCTTCTTCCTCTCTTCCCACAATTTCATCTACACTTCCCATCTCTCTTCCTTCCACCAAAAACAAGCTTGGAGTAACAACAACTCGTCATTATCTACTACTCATGCCATCGTTGATCTTGAACCTGATGATACCGTTACTTCCTTCGATTATCTCATGGAGAAAGAAGCGCTTCTACTTGGAACTTCGAACGGGCTTTTGTTGCTATTTGATGTTGATGCGAACGTGACTCAAGTTGTTGGTAATGTTGATGGCGGTGTTAATTGTATTTCGCTTAGTCCTGATGGTGAAGTTATTGCTGTAGTTACTGGTTTTGGTCAGGTTTTGGTCATGACTCATGATTGGGATTTGCTGTATGAAATATCACTCTTCGATGACAATGATGATGAAGGTCATCACGTAAGTAAGGACTATTCACCTTTCTTTCAAATTTTATTAAGTGTATGTTTGGTTTTGTGACAATATTGATTTTGAGTAAATTGATTGATTTGATTCTGGCTAAAAGTAAGTTGAAGGTGATTTATGTTTGGATTGATTTATGTTAAAGGAGTTAGAACAGTAAATTTGAGTGCAAACTTCAATTCTAGAATCAGAGGCTACAATTACTGGCTTCAAGTTAGAATCAATATGGAGGCAAAATTAATTCTACTTGAGAGCAACTAAACATGTCAAAATCCAATTATATACCTCCTAAATTAATTTTGGCTCCTCCGGAAGTGAAACCAAGGTGTAATTTGTATGATAATTTGTCCTTTTATGTTGTTTTTTACTTTCGATTCAATTGGCTTTATAACTCATAGAATTCTCTCAATTAATTAAAATAAGTCTGTTCGGATAAACAACTTAATTAAACTTTTATAGCATAAACACTTACCGTGTAAGTGCTTTTATAATTGTATAAGCTATTTCTATATAAAAAAACGATGTAACAAAGACATACTGTTTTCATATAAGCTATAACCTGTTTTTTTCGTAAGCTACAGTGGAGTACTGCTTATGGAAATAAGTTAAAAACAACTTGTGGACTTGTCATTAGTTGTTTCCTGAACAGTCTCACATGTGTTTATGCCAATAGATAAGCTCAAATAAGTTAGTCCAAAGAGACCATAAGTTTATGGTGGTTCAGTTACCGGGAAGTTTTTATAAGCTTATATGTGGCCGATAGAAGTTAACTAGAGTTCATGAAAAAAAATTGAGATGCAGAAGCAAGTTTCAACTTATACGAGAAGTTTCTGTTTAAAGAACTTATAGTAATTGTAAGACTGTTTTAATATTTCTTTTACATAAGTGTTTGAAAGAAGTTTATCTAAATTGGATCTATATATATTTGTATTTAGGATTTTTTTACTACTCGCATATAGTACAAGTGAATGTCTGTGCCTTATAGCTGTATTCTTATTTGCAAATTTGGTGTTTGAGTTCTCTCTTTATGTAGAGCTGGTTCAAAGTAGTGATTGTATTACTGTTTTTCAGATGGAGAAAACTTTATGGAGCAACATCCTATATCATGGCGAGGAGATGGAAAATACTTTGCTACGATGAGTATGTGTGGTTCTAATTTATCACGGAAACTTAAGATTTGGGAACGAGATTCAGGAGCATTACTTGCCTCTTCAGAGGAAAAAGCTTTTGCAGGAGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTATATGATAGAAAAGCTGAAAATGAATCCCCCTCCGTTGTTTTCTTTGAGAGAAATGGATTAGAAAGAAGCAAATTTAGTGTTGGTGAAGGAATTAATGCGAAAGTAAGATTTCTGAAGTGGAATTGCAGTTCTGATCTTCTTGCTGGTGTTGTTGAATGTGAAAATTATGAGGCTCTAAAGATATGGTATTTTAGCAACAATCATTGGTACCTGAAGCATGAAATTAGATACTTAAAGCAAGACGAAGTCAGGTTCATGTGGAATCAAGAAAAACCTTTGCAGTTGATTTGTTGGACTCTTGGTGGTCAGGTTACAGTTTACAATTTTGTTTGGATCACGGCTATTACGGACAATTCCGTTGCACTAGTCATCGATGGCTCCAATATTCATGTAACACCACTTTCCTTATCCTTAATGCCGCCTCCTATGTACTTATTTAGCCTAACATTTTCTTCTCATGTACGGGGTATGGCAGTATACTGTAAAAACTCCAAGAACCAGTTAGCTGCATTTCTTTCAGATGGTAGTTTATGTGTTGTAGAGCTTCCATCAATTGAAACTTGGGAAGAACTAGAGGGGCAAGAATTCAGTGTTGAAGCCTCTCATACTGAAACAGTGTTTGGATCCACATTACATCTTGTATGGTTAGATTCACATACGCTGTTATCTGTTTCCCATTATGGTTTCAGTCACAGCAATGACTTATTCCAAAGCTCACTAAATGAGGGTGCACTTCGAGGCTTCTATTTGCAGGAAATAGAATTGGAATGTTCCGAGGATATTGTTCCAGGATTGCTGACATGTTCAGGTTGGAATGCAACAGTTTCTAAGCAAAATACACTTGAAGAGCTTGTTATTGGCATTGCTCCAAATCCTGCCAGTAAATATTCTGCATATATGCAGTTTTCTGATGGGAAAATCAACGAGTATTTATCGAAAATTGTCACTGGTGGCGGATCTTTGGAACAAGAATATCAAGGTTTTTCTGCAGCCTGCCCTTGGATGGATGTAGCGTTGGTCGGAAGTGCTGGCCAGTCAAAACCAGTGCTTTTTGGACTGGACGAGATTGGCAGATTGCATGCTAGCGGGGGGATAGTAGTTTGCAACAACTGCAGCAGTTTCTCATTTTACTCGAATTTGGCAGATCAAGTTGTGACACATCTAATTCTTGCAACTAAACAAGATCTGCTTTTTATTGTTGACATTGTCGATATATTTAATGGGGAGTTAGACTCAAAGTATGGGAATTTTGTCCGCAGTAACAGCAGAAAAAGGGAAGAAAATGAAAATTACATACATATATGGGAGAGAGGTGCTAAAATAGTTGGAGTTTTACATGGAGACGAAGCTGCCACTATACTACAAACTACTCGGGGAAACCTAGAATGTATATACCCTAGAAAATTGGTTTTGGTTTCTATCATTAATGCCTTAGTTCAAAAGCGATTTAGAGATGCATTACTCATGGTTAGGAGACATAGGATAGATTTCAATGTAATTGTTGATTACCGTGGTTGGCAAGCTTTTTCACAGTCAGCCTTTGAATTTGTCAGGCAGGTCAACAATTTGGGTTACATAACTGAGTTTGTTTGTTCTGTAAAGAATGAAAATGTTATAGAGACACTCTACAAAAATCATGTGTCCGTTCCCTGTTCAGAGGTTGCTAATGTTATGCTAGCTGGAGGCCTCCAAAATTACCCCATAGACAACAAGGTTTCTTCAATTCTGATGGCCATAAGAAAAGCACTTGAAGACCATTTTACAGAAAGCCCTGCTAGGGAGCTTTGCATATTAACCACACTTGCTCGGAGTGAGCCTCCATTACTTGAAGATGCTTTAAAGAGAATAAAAGTTATCCGTGAAAAGGAGTTGTCTCATGCTGATGATCACAGGAGAATGACCTACCCTTCTGCTGAAGAAGCTTTGAAACATCTGTTGTGGTTGGCCGATGGGGATGCTGTCTATGATGCTGCTTTGGGTCTTTATGATTTAAAACTCACCGCTATTGTGGCATTGAATGCCCAAAAAGATCCAAAAGAATTTCTTCCTTTCTTGCAAGAGTTGGAGCGTATGCCTACACCATTAATGCAATACAATATCGACCTTAGGCTGAAAAGGTTCGAAAAGGCTCTCAGACATATTGCTTCTGCCGGCGATTCTTATTATGATGATTGTATGACACTGGTGAAGAAAAACCCTCAACTTTTCCCCTTGTCTCTTCAACTTTTTACTGACCCTGCTAAGAGGATGTCATTCCTTGAGGCATGGGGTGATTATCTTAGCGGTGAAAAATGCTTTGAAGATGCTGCAACAATTTACTTGTCCTGTTTCAATCTGGATAAGGCTCTTAAGTCTTATCGTGCTATTAATAACTGGAGTGGGGTGCTTACAGTTGCTGGGTTCCTTAATCTGGGAAAGGATGAAGTACTGCATCTTGCCGGTGAGCTTTGCGAAGAACTTCAAGCACTTGGTAAGCCTGGTGAAGCTGCCAAAATTGCCCTGGATTACTGTGGAGATGTTAACTCTGGTGTAAATTTATTAATTTCTGCAAGGGATTGGGAGGAGGCTATGAGGGTTGTTTTTATGCATAGAAGAGAGGACTTAGTTAAGGTTGTGAAGGATGCATCTGTTGAATGTGCAAGCACACTTACCAATGAATATGAGGAAGGCTTAGAGAAAGTAGGGAAGTACTTGGCCCGTTACTTAGCTGTTCGACAAAGAAGGCTACTTCTCGCAGCAAAGCTCCAATCAGAGAAACGTGAAGGTAGTGATGTTGAAGATGATGCTGCTTCAGAGGCTAGCAGTAATTTTAGTGGAATGAGTGCATACACCACAGGGTACGTAATTTTCCTTGATCCCATATACATTGCTATATACTTTGGAAGATGTAGAACATCCATTTAACATGCTTTTGTATATATTTTGAACCGATTTTCTTTGACTCTGAGGATGGACTCCGGCCTTATAACATATTATAATGAACAAAACTGAGAGCCACAGTGGTATTTCCATAATCTTTCATGTATTAAATACTAGCAGTTAGATGCTCTGTTTTTATAATTGTAGTCTGTATCATAATATTTGCAATAAAGTAATTTATTGTTGTCATGTAGAACTATGCAACCTTTGAATTGTCCCCATTGTTACAACCTAGTGGTTTGGTTGTGAGGACATTTTGCGTGGAACCCTGAGTTCGAACCCAGTTCACCACATTCCCCCCCTCCTTGTGTCTGTCTGTTTATTTGTGTATGTGTTGGCTACTAAGCTAATAGCAAAATTTTGAATCATATAGTTATAGTTATTTGTGGGTAAAGTTTGACACTCCCTACCTCGGGATTGAAAAATCATTGTCACATTGAAACTCATGTCTCTTTCTTAGTAGCATCTGCTGCCTTTGCAGGCAGAGCTCGGCCGTCCAAGTCTGGATAATATTTGTTTTCTAACCATCCTTATTATTTGACCTGGGTGGCCATTGTGTCCACAAATGAGTTGGCCTAATGTCTCATTTCTTCAATGTGAATAGCAAAACCTCCTGTTCAATTTTACCTAGGTTTGATTTAGTCATTTAGAGACAAAAATTACTACATAAGATGATAAATTGAACCGTGTTTATTTTTCTATTCATTTTAGAAAAAGAATAACAAAGGTAATTGTTTTTACATTATTGTTTTATTTATCTCTTCTGTTATTCTTTTGTTGCGCTAAGCTTCATTTATATTCTTGATTTCATCAACAGGACCAGGAAAAGTTCTGCTGCTTCTACTCTTTCAGCTGCAACTACCAGGGCAAGAGATGCTAGGCGTCAGAGGAAAAGAGGAAAAATCCGTCCTGGGAGGTATCTTGACCTGAGATTTTTTGTGTAGCAATTTTCCCTGCTCTGTGCACCTTCATTTTTCATTAGCCACTACATATCTAAAGACTAAAGTGACAGTGTTCTCTATTCACTATTTTGCAGTGCTGATGAGGAGTTTGCGTTGGTGGATCATTTGAAAGGCATGTCTATGAGAGTGGAAGCAAGACGAGAGCTGAAATCTTTGTTGGTTTCCCTTATGATGTTTGGTGAGGGTGAAACTGCAAGGAAGCTACAGCAAATGGGGGAAAACTTTCAATTGTCTCAGATGGCAGCAGTCAGATTAGCTGAGGATACAATATCAAATGATACCATAAACGAGTATGCACATACTTTGGAGCAATATACCCGAAAAGTAAGGGATGAAATGCATGATTCAGAGGCTTTGTCGTGGCGGGTCAAAGTTTTTTTAAGCAACGAGTGA

Protein sequence

>MS.gene90863.t1

MKNLKLFREVPLLLRLNSDDETFRFSALDIERNRLFFLSSHNFIYTSHLSSFHQKQAWSNNNSSLSTTHAIVDLEPDDTVTSFDYLMEKEALLLGTSNGLLLLFDVDANVTQVVGNVDGGVNCISLSPDGEVIAVVTGFGQVLVMTHDWDLLYEISLFDDNDDEGHHVNGENFMEQHPISWRGDGKYFATMSMCGSNLSRKLKIWERDSGALLASSEEKAFAGAVLEWMPSGAKIAAVYDRKAENESPSVVFFERNGLERSKFSVGEGINAKVRFLKWNCSSDLLAGVVECENYEALKIWYFSNNHWYLKHEIRYLKQDEVRFMWNQEKPLQLICWTLGGQVTVYNFVWITAITDNSVALVIDGSNIHVTPLSLSLMPPPMYLFSLTFSSHVRGMAVYCKNSKNQLAAFLSDGSLCVVELPSIETWEELEGQEFSVEASHTETVFGSTLHLVWLDSHTLLSVSHYGFSHSNDLFQSSLNEGALRGFYLQEIELECSEDIVPGLLTCSGWNATVSKQNTLEELVIGIAPNPASKYSAYMQFSDGKINEYLSKIVTGGGSLEQEYQGFSAACPWMDVALVGSAGQSKPVLFGLDEIGRLHASGGIVVCNNCSSFSFYSNLADQVVTHLILATKQDLLFIVDIVDIFNGELDSKYGNFVRSNSRKREENENYIHIWERGAKIVGVLHGDEAATILQTTRGNLECIYPRKLVLVSIINALVQKRFRDALLMVRRHRIDFNVIVDYRGWQAFSQSAFEFVRQVNNLGYITEFVCSVKNENVIETLYKNHVSVPCSEVANVMLAGGLQNYPIDNKVSSILMAIRKALEDHFTESPARELCILTTLARSEPPLLEDALKRIKVIREKELSHADDHRRMTYPSAEEALKHLLWLADGDAVYDAALGLYDLKLTAIVALNAQKDPKEFLPFLQELERMPTPLMQYNIDLRLKRFEKALRHIASAGDSYYDDCMTLVKKNPQLFPLSLQLFTDPAKRMSFLEAWGDYLSGEKCFEDAATIYLSCFNLDKALKSYRAINNWSGVLTVAGFLNLGKDEVLHLAGELCEELQALGKPGEAAKIALDYCGDVNSGVNLLISARDWEEAMRVVFMHRREDLVKVVKDASVECASTLTNEYEEGLEKVGKYLARYLAVRQRRLLLAAKLQSEKREGSDVEDDAASEASSNFSGMSAYTTGTRKSSAASTLSAATTRARDARRQRKRGKIRPGSADEEFALVDHLKGMSMRVEARRELKSLLVSLMMFGEGETARKLQQMGENFQLSQMAAVRLAEDTISNDTINEYAHTLEQYTRKVRDEMHDSEALSWRVKVFLSNE