Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01669.t1 | XP_003593727.1 | 82.7 | 243 | 32 | 1 | 1 | 233 | 1 | 243 | 5.00E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01669.t1 | Q6NMR9 | 66.9 | 236 | 71 | 1 | 4 | 232 | 3 | 238 | 4.8e-91 | 335.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01669.t1 | G7IK96 | 82.7 | 243 | 32 | 1 | 1 | 233 | 1 | 243 | 3.6e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01669 | MS.gene48374 | PPI |
| MS.gene01669 | MS.gene008064 | PPI |
| MS.gene01669 | MS.gene057336 | PPI |
| MS.gene01669 | MS.gene69231 | PPI |
| MS.gene01669 | MS.gene56873 | PPI |
| MS.gene01669 | MS.gene031984 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01669.t1 | MTR_2g015500 | 82.716 | 243 | 32 | 1 | 1 | 233 | 1 | 243 | 3.38e-151 | 420 |
| MS.gene01669.t1 | MTR_2g015510 | 80.833 | 240 | 38 | 1 | 2 | 233 | 3 | 242 | 1.06e-146 | 409 |
| MS.gene01669.t1 | MTR_2g015480 | 70.435 | 230 | 39 | 6 | 12 | 229 | 65 | 277 | 1.20e-100 | 295 |
| MS.gene01669.t1 | MTR_4g105680 | 45.581 | 215 | 110 | 2 | 25 | 232 | 51 | 265 | 5.27e-59 | 187 |
| MS.gene01669.t1 | MTR_7g068530 | 37.864 | 206 | 120 | 2 | 4 | 205 | 6 | 207 | 9.11e-49 | 160 |
| MS.gene01669.t1 | MTR_4g016510 | 37.379 | 206 | 123 | 3 | 4 | 205 | 6 | 209 | 5.76e-48 | 159 |
| MS.gene01669.t1 | MTR_7g068550 | 37.864 | 206 | 120 | 3 | 4 | 205 | 6 | 207 | 1.66e-47 | 157 |
| MS.gene01669.t1 | MTR_7g068460 | 36.538 | 208 | 124 | 3 | 2 | 205 | 31 | 234 | 2.29e-44 | 150 |
| MS.gene01669.t1 | MTR_3g070460 | 35.577 | 208 | 124 | 3 | 4 | 205 | 6 | 209 | 1.17e-42 | 145 |
| MS.gene01669.t1 | MTR_7g068500 | 36.364 | 209 | 123 | 4 | 2 | 205 | 30 | 233 | 2.93e-42 | 145 |
| MS.gene01669.t1 | MTR_7g068470 | 34.466 | 206 | 127 | 4 | 4 | 205 | 2 | 203 | 3.39e-40 | 138 |
| MS.gene01669.t1 | MTR_7g068470 | 34.951 | 206 | 122 | 5 | 4 | 205 | 2 | 199 | 9.51e-40 | 137 |
| MS.gene01669.t1 | MTR_7g068450 | 31.646 | 237 | 148 | 3 | 4 | 229 | 2 | 235 | 4.67e-37 | 130 |
| MS.gene01669.t1 | MTR_4g016500 | 32.353 | 136 | 64 | 3 | 33 | 168 | 277 | 384 | 1.25e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01669.t1 | AT5G45920 | 66.949 | 236 | 71 | 1 | 4 | 232 | 3 | 238 | 3.64e-116 | 332 |
| MS.gene01669.t1 | AT5G45920 | 66.949 | 236 | 71 | 1 | 4 | 232 | 3 | 238 | 3.64e-116 | 332 |
| MS.gene01669.t1 | AT5G45920 | 69.613 | 181 | 48 | 1 | 4 | 177 | 3 | 183 | 1.44e-90 | 265 |
| MS.gene01669.t1 | AT5G45920 | 69.613 | 181 | 48 | 1 | 4 | 177 | 3 | 183 | 1.44e-90 | 265 |
| MS.gene01669.t1 | AT5G62930 | 52.542 | 236 | 105 | 2 | 4 | 232 | 2 | 237 | 3.50e-80 | 240 |
| MS.gene01669.t1 | AT5G62930 | 52.542 | 236 | 105 | 2 | 4 | 232 | 28 | 263 | 1.47e-79 | 240 |
| MS.gene01669.t1 | AT5G62930 | 49.438 | 178 | 87 | 1 | 58 | 232 | 2 | 179 | 1.62e-53 | 171 |
| MS.gene01669.t1 | AT2G38180 | 38.049 | 205 | 119 | 3 | 4 | 204 | 6 | 206 | 6.92e-44 | 150 |
| MS.gene01669.t1 | AT3G11210 | 34.615 | 208 | 126 | 3 | 4 | 205 | 6 | 209 | 1.36e-42 | 145 |
Find 61 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTTCATTTGTCCTTTC+AGG | 0.154934 | 2.4:+69507016 | None:intergenic |
| TTGGATCAATATCAGCTAAA+AGG | 0.242460 | 2.4:+69506521 | None:intergenic |
| AAATTCCTTTCATTGATCTT+TGG | 0.243390 | 2.4:-69506949 | MS.gene01669:CDS |
| AAGTCGTGCTTCTTCATCTA+TGG | 0.253796 | 2.4:+69507397 | None:intergenic |
| AATGCCTTCAGTGGATCATT+TGG | 0.343903 | 2.4:+69506502 | None:intergenic |
| TCCTTTGGTGTTGGAGGATG+GGG | 0.361517 | 2.4:-69509735 | MS.gene01669:CDS |
| CAAAGCAACAGGAGCAGTTT+CGG | 0.379507 | 2.4:+69508222 | None:intergenic |
| GAAAGGAATTTGACACTCAT+TGG | 0.387705 | 2.4:+69506961 | None:intergenic |
| CTATGGGAGGAGGAGTTATA+AGG | 0.399420 | 2.4:+69507414 | None:intergenic |
| TGGATCAATATCAGCTAAAA+GGG | 0.400368 | 2.4:+69506522 | None:intergenic |
| GACGGTTTGCATCTCACTAA+TGG | 0.400983 | 2.4:-69506628 | MS.gene01669:CDS |
| TCGATCACTGAAGAATCCTT+TGG | 0.438191 | 2.4:-69509750 | MS.gene01669:CDS |
| AGGGAATCAATTTGTGTTTG+AGG | 0.442405 | 2.4:-69506605 | MS.gene01669:CDS |
| ACTAAAATGCAACGGTTCCC+TGG | 0.444415 | 2.4:-69506926 | MS.gene01669:CDS |
| AAGAAAACTGTCAAAGCAAC+AGG | 0.453323 | 2.4:+69508211 | None:intergenic |
| AATCCTTTGGTGTTGGAGGA+TGG | 0.456779 | 2.4:-69509737 | MS.gene01669:CDS |
| ATCCTTTGGTGTTGGAGGAT+GGG | 0.456978 | 2.4:-69509736 | MS.gene01669:CDS |
| GTCCTTTCAGGAAGCCCCTC+CGG | 0.465657 | 2.4:+69507028 | None:intergenic |
| AAATGCAACGGTTCCCTGGA+TGG | 0.484613 | 2.4:-69506922 | MS.gene01669:CDS |
| GGCACTGAAGGTGTTGGAAA+GGG | 0.491788 | 2.4:-69508278 | MS.gene01669:intron |
| TATAACAAAACATGACTAAG+AGG | 0.493140 | 2.4:-69509797 | None:intergenic |
| ACTGAAGAATCCTTTGGTGT+TGG | 0.507462 | 2.4:-69509744 | MS.gene01669:CDS |
| TAGATGAAGAAGCACGACTT+AGG | 0.509915 | 2.4:-69507394 | MS.gene01669:intron |
| GAAGAATCCTTTGGTGTTGG+AGG | 0.526860 | 2.4:-69509741 | MS.gene01669:CDS |
| TGCCAACTATTTCTCTCGTA+CGG | 0.529977 | 2.4:-69509703 | MS.gene01669:intron |
| ATCCGGAGGGGCTTCCTGAA+AGG | 0.532035 | 2.4:-69507030 | MS.gene01669:CDS |
| TTATTTGTTTGTGAACAATC+CGG | 0.532846 | 2.4:-69507047 | MS.gene01669:CDS |
| TCACCGAAAAGATATATTTG+TGG | 0.535472 | 2.4:+69509774 | None:intergenic |
| AGTCGTGCTTCTTCATCTAT+GGG | 0.542373 | 2.4:+69507398 | None:intergenic |
| AATGCAACGGTTCCCTGGAT+GGG | 0.542822 | 2.4:-69506921 | MS.gene01669:CDS |
| GAAAGGACAAATGAAGCTGC+TGG | 0.551991 | 2.4:-69507013 | MS.gene01669:CDS |
| ATCTTTGGACTAAAATGCAA+CGG | 0.555620 | 2.4:-69506934 | MS.gene01669:CDS |
| TACCGTACGAGAGAAATAGT+TGG | 0.562274 | 2.4:+69509701 | None:intergenic |
| GGGCACTGAAGGTGTTGGAA+AGG | 0.563729 | 2.4:-69508279 | MS.gene01669:CDS |
| ATAAGGACAACATTAGTTGA+CGG | 0.572638 | 2.4:+69507431 | None:intergenic |
| GCTTCTTCATCTATGGGAGG+AGG | 0.576690 | 2.4:+69507404 | None:intergenic |
| TGTGAGTCTAGAATCTATGC+AGG | 0.579365 | 2.4:-69506554 | MS.gene01669:CDS |
| TGTTCCTCTTCATGAGTACA+AGG | 0.584094 | 2.4:-69508140 | MS.gene01669:CDS |
| TTAGTCCAAAGATCAATGAA+AGG | 0.592788 | 2.4:+69506944 | None:intergenic |
| AAAAGGAGACAATGGAGCGA+AGG | 0.597580 | 2.4:+69508113 | None:intergenic |
| ACCCCATCCTCCAACACCAA+AGG | 0.599552 | 2.4:+69509734 | None:intergenic |
| TGGTGTTCAGAGGGTATCGT+GGG | 0.600203 | 2.4:-69508315 | MS.gene01669:CDS |
| GGTTTGCATCTCACTAATGG+AGG | 0.604059 | 2.4:-69506625 | MS.gene01669:CDS |
| TTGTCCTTGTACTCATGAAG+AGG | 0.610871 | 2.4:+69508136 | None:intergenic |
| TGATCCAAATGATCCACTGA+AGG | 0.615047 | 2.4:-69506506 | MS.gene01669:CDS |
| TAACACACGATGGGCACTGA+AGG | 0.617976 | 2.4:-69508290 | MS.gene01669:CDS |
| AGGCTGATGTGGTGTTCAGA+GGG | 0.618365 | 2.4:-69508324 | MS.gene01669:CDS |
| ACGATGGGCACTGAAGGTGT+TGG | 0.625863 | 2.4:-69508284 | MS.gene01669:CDS |
| GTGGTGTTCAGAGGGTATCG+TGG | 0.629790 | 2.4:-69508316 | MS.gene01669:CDS |
| GGATCAATATCAGCTAAAAG+GGG | 0.632239 | 2.4:+69506523 | None:intergenic |
| TGCTAAAGCATGCATTTCTG+TGG | 0.632567 | 2.4:-69506984 | MS.gene01669:CDS |
| TAGGCTGATGTGGTGTTCAG+AGG | 0.635589 | 2.4:-69508325 | MS.gene01669:CDS |
| TTGTTTGTGAACAATCCGGA+GGG | 0.641948 | 2.4:-69507043 | MS.gene01669:CDS |
| TCGTGGGTATAACACACGAT+GGG | 0.646142 | 2.4:-69508299 | MS.gene01669:CDS |
| TGTTTGTGAACAATCCGGAG+GGG | 0.648290 | 2.4:-69507042 | MS.gene01669:CDS |
| CGTGCTTCTTCATCTATGGG+AGG | 0.659087 | 2.4:+69507401 | None:intergenic |
| TTTGTTTGTGAACAATCCGG+AGG | 0.659446 | 2.4:-69507044 | MS.gene01669:CDS |
| GTTTGCATCTCACTAATGGA+GGG | 0.661505 | 2.4:-69506624 | MS.gene01669:CDS |
| GATCAATATCAGCTAAAAGG+GGG | 0.672744 | 2.4:+69506524 | None:intergenic |
| ATCGTGGGTATAACACACGA+TGG | 0.679127 | 2.4:-69508300 | MS.gene01669:CDS |
| GCTCGTGTGATAGGCTGATG+TGG | 0.704764 | 2.4:-69508335 | MS.gene01669:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAATAAA+AGG | - | chr2.4:69507511-69507530 | MS.gene01669:intron | 0.0% |
| !!! | AATTAAAAAAAAATTATTTT+TGG | + | chr2.4:69507795-69507814 | None:intergenic | 0.0% |
| !! | GTATAAATAAATCATATAAT+TGG | - | chr2.4:69508791-69508810 | MS.gene01669:intron | 10.0% |
| !!! | AATAAATAAAAGGTTAATTT+TGG | - | chr2.4:69507521-69507540 | MS.gene01669:intron | 10.0% |
| !!! | CATTAGTATTTTAAATTAAA+TGG | + | chr2.4:69509472-69509491 | None:intergenic | 10.0% |
| !!! | CTTTAAAATGATTTTTTTTT+TGG | - | chr2.4:69507214-69507233 | MS.gene01669:intron | 10.0% |
| !!! | TTATTAAAATTAAAAGTGTT+TGG | - | chr2.4:69507046-69507065 | MS.gene01669:CDS | 10.0% |
| !! | AAAATTCTAAACATTTAAAG+TGG | + | chr2.4:69508725-69508744 | None:intergenic | 15.0% |
| !! | ATAAATATAAATGACGTAAA+AGG | - | chr2.4:69507093-69507112 | MS.gene01669:intron | 15.0% |
| !! | ATATGATTTATTTATACAAG+AGG | + | chr2.4:69508788-69508807 | None:intergenic | 15.0% |
| !! | ATTAAATATGCAAAGATAAT+TGG | - | chr2.4:69509517-69509536 | MS.gene01669:intron | 15.0% |
| !! | TATTATATGAATTATGAACA+AGG | - | chr2.4:69507365-69507384 | MS.gene01669:intron | 15.0% |
| !!! | AAAAATCTTATTTTAAAAGC+CGG | + | chr2.4:69508296-69508315 | None:intergenic | 15.0% |
| !!! | AATGTTTTTATTTTTCGTTA+TGG | - | chr2.4:69506728-69506747 | MS.gene01669:intron | 15.0% |
| !!! | ACATTTGATTTATCATATAA+TGG | + | chr2.4:69508563-69508582 | None:intergenic | 15.0% |
| !!! | CTTAATTTTGTTTTTTCTTT+AGG | - | chr2.4:69508640-69508659 | MS.gene01669:intron | 15.0% |
| !! | AAATCAAATGTAGAAATAGT+AGG | - | chr2.4:69508502-69508521 | MS.gene01669:intron | 20.0% |
| !! | AAATCAAATGTAGAAATTGT+AGG | - | chr2.4:69508572-69508591 | MS.gene01669:intron | 20.0% |
| !! | AACTTATTAATTAGTGAGTT+GGG | - | chr2.4:69508439-69508458 | MS.gene01669:intron | 20.0% |
| !! | AAGAAAACCTAATAAAAACA+AGG | + | chr2.4:69509140-69509159 | None:intergenic | 20.0% |
| !! | AGAAAACCTAATAAAAACAA+GGG | + | chr2.4:69509139-69509158 | None:intergenic | 20.0% |
| !! | ATAAAAAAACTAAGAGATGA+AGG | - | chr2.4:69509704-69509723 | MS.gene01669:CDS | 20.0% |
| !! | TAAAAACAATGACAAAATCA+AGG | + | chr2.4:69508934-69508953 | None:intergenic | 20.0% |
| !! | TAAAATACTAATGAACATGA+TGG | - | chr2.4:69509479-69509498 | MS.gene01669:intron | 20.0% |
| !! | TAAACATAAATGAAGAGTTA+AGG | - | chr2.4:69508267-69508286 | MS.gene01669:intron | 20.0% |
| !! | TAATAAATAAACCCGTTATT+AGG | + | chr2.4:69508346-69508365 | None:intergenic | 20.0% |
| !! | TATAGAAGTTAATCATACTT+AGG | - | chr2.4:69509189-69509208 | MS.gene01669:intron | 20.0% |
| !! | TTTCAATCTATTACAAAATC+TGG | + | chr2.4:69506681-69506700 | None:intergenic | 20.0% |
| !!! | AACAAAGAAGGTAAAATTTT+TGG | + | chr2.4:69509406-69509425 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | + | chr2.4:69508998-69509017 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr2.4:69508999-69509018 | None:intergenic | 20.0% |
| !!! | TACTTTCTCAAAAATCATTT+TGG | + | chr2.4:69507867-69507886 | None:intergenic | 20.0% |
| !!! | TGATTTTGTCATTGTTTTTA+GGG | - | chr2.4:69508934-69508953 | MS.gene01669:intron | 20.0% |
| !!! | TTGATTTTGTCATTGTTTTT+AGG | - | chr2.4:69508933-69508952 | MS.gene01669:intron | 20.0% |
| !!! | TTTGTTTTTTCTTTAGGTTT+AGG | - | chr2.4:69508646-69508665 | MS.gene01669:intron | 20.0% |
| !!! | TTTTGGAAAACATCTTTAAA+AGG | - | chr2.4:69507231-69507250 | MS.gene01669:intron | 20.0% |
| ! | AAAACATGTGAAACAGATAT+AGG | + | chr2.4:69507723-69507742 | None:intergenic | 25.0% |
| ! | AAATTCCTTTCATTGATCTT+TGG | - | chr2.4:69509332-69509351 | MS.gene01669:intron | 25.0% |
| ! | AGAAAAAACATGAAATGACA+TGG | + | chr2.4:69506642-69506661 | None:intergenic | 25.0% |
| ! | AGTGAACAAGAAATCTTTAA+AGG | - | chr2.4:69507404-69507423 | MS.gene01669:CDS | 25.0% |
| ! | AGTTAATGAAACCTAATAAC+GGG | - | chr2.4:69508332-69508351 | MS.gene01669:intron | 25.0% |
| ! | CACTATGGAAAATATTTGTT+AGG | - | chr2.4:69506900-69506919 | MS.gene01669:intron | 25.0% |
| ! | GAAATGTGCAAATTTGATAT+TGG | - | chr2.4:69508416-69508435 | MS.gene01669:intron | 25.0% |
| ! | GAACTTATTAATTAGTGAGT+TGG | - | chr2.4:69508438-69508457 | MS.gene01669:intron | 25.0% |
| ! | GAGTTAATGAAACCTAATAA+CGG | - | chr2.4:69508331-69508350 | MS.gene01669:intron | 25.0% |
| ! | TAACAATGACTAATCTATGT+TGG | + | chr2.4:69507746-69507765 | None:intergenic | 25.0% |
| ! | TAAGAGAAGATAAACAAAGA+AGG | + | chr2.4:69509418-69509437 | None:intergenic | 25.0% |
| ! | TATCTTCTCTTACAATACTT+TGG | - | chr2.4:69509426-69509445 | MS.gene01669:intron | 25.0% |
| ! | TTACCAAGTTACCTTAAAAA+AGG | + | chr2.4:69508188-69508207 | None:intergenic | 25.0% |
| ! | TTATTTGTTTGTGAACAATC+CGG | - | chr2.4:69509234-69509253 | MS.gene01669:intron | 25.0% |
| !! | ATGCTATGGTATTATAGTTT+TGG | - | chr2.4:69509596-69509615 | MS.gene01669:intron | 25.0% |
| !! | GGTGACATTTTACATTTTAA+TGG | + | chr2.4:69508542-69508561 | None:intergenic | 25.0% |
| !! | TCATCAAAATTGACTTTGTA+TGG | + | chr2.4:69509554-69509573 | None:intergenic | 25.0% |
| !!! | ACATTTCCCTTGTTTTTATT+AGG | - | chr2.4:69509130-69509149 | MS.gene01669:intron | 25.0% |
| !!! | CTTTGAGTTTTTCATTTTAG+AGG | + | chr2.4:69508473-69508492 | None:intergenic | 25.0% |
| !!! | TCAATTTTTAGTTCACACTA+TGG | - | chr2.4:69506885-69506904 | MS.gene01669:intron | 25.0% |
| !!! | TTTCATGTTTTTTCTCTTGA+TGG | - | chr2.4:69506647-69506666 | MS.gene01669:intron | 25.0% |
| AAAAAACAGCAACATTCTTG+TGG | + | chr2.4:69507479-69507498 | None:intergenic | 30.0% | |
| AAGAGGCTCAAATATCTTAT+CGG | + | chr2.4:69506847-69506866 | None:intergenic | 30.0% | |
| AATCAAAGTATGTGATGCTA+TGG | - | chr2.4:69509582-69509601 | MS.gene01669:intron | 30.0% | |
| ATAAGGACAACATTAGTTGA+CGG | + | chr2.4:69508853-69508872 | None:intergenic | 30.0% | |
| ATCTTTGGACTAAAATGCAA+CGG | - | chr2.4:69509347-69509366 | MS.gene01669:intron | 30.0% | |
| ATTTGAGCCTCTTAAATATG+TGG | - | chr2.4:69506854-69506873 | MS.gene01669:intron | 30.0% | |
| TACCTTAAAAAAGGAGACAA+TGG | + | chr2.4:69508179-69508198 | None:intergenic | 30.0% | |
| TCACCGAAAAGATATATTTG+TGG | + | chr2.4:69506510-69506529 | None:intergenic | 30.0% | |
| TGGATCAATATCAGCTAAAA+GGG | + | chr2.4:69509762-69509781 | None:intergenic | 30.0% | |
| TGTTAACTTAAATGCAGTGA+CGG | - | chr2.4:69509635-69509654 | MS.gene01669:intron | 30.0% | |
| TTAGTCCAAAGATCAATGAA+AGG | + | chr2.4:69509340-69509359 | None:intergenic | 30.0% | |
| TTGATAGAATAAGACGTGTT+TGG | + | chr2.4:69507639-69507658 | None:intergenic | 30.0% | |
| TTGGATCAATATCAGCTAAA+AGG | + | chr2.4:69509763-69509782 | None:intergenic | 30.0% | |
| ! | AGGCCACAAATATATCTTTT+CGG | - | chr2.4:69506504-69506523 | MS.gene01669:CDS | 30.0% |
| ! | TGAAAAACAGAGCATCTATT+AGG | + | chr2.4:69508118-69508137 | None:intergenic | 30.0% |
| ! | TTGCTTTGACAGTTTTCTTT+GGG | - | chr2.4:69508074-69508093 | MS.gene01669:intron | 30.0% |
| !!! | TCTCCTTTTTTAAGGTAACT+TGG | - | chr2.4:69508182-69508201 | MS.gene01669:CDS | 30.0% |
| AAACAGATATAGGCTGTGTT+TGG | + | chr2.4:69507713-69507732 | None:intergenic | 35.0% | |
| AAATGAAGAGTTAAGGAGAC+CGG | - | chr2.4:69508274-69508293 | MS.gene01669:intron | 35.0% | |
| AAATGACATGGAAACATGGT+TGG | + | chr2.4:69506630-69506649 | None:intergenic | 35.0% | |
| AACCGTAATATATGACAACC+TGG | - | chr2.4:69507428-69507447 | MS.gene01669:CDS | 35.0% | |
| AAGAAAACTGTCAAAGCAAC+AGG | + | chr2.4:69508073-69508092 | None:intergenic | 35.0% | |
| ACCCAGGTTGTCATATATTA+CGG | + | chr2.4:69507433-69507452 | None:intergenic | 35.0% | |
| ACCGTAATATATGACAACCT+GGG | - | chr2.4:69507429-69507448 | MS.gene01669:CDS | 35.0% | |
| AGAGGCTCAAATATCTTATC+GGG | + | chr2.4:69506846-69506865 | None:intergenic | 35.0% | |
| AGGGAATCAATTTGTGTTTG+AGG | - | chr2.4:69509676-69509695 | MS.gene01669:intron | 35.0% | |
| ATATATGACAACCTGGGTTA+TGG | - | chr2.4:69507435-69507454 | MS.gene01669:CDS | 35.0% | |
| CAAAAAACGCTATAAGCTAG+TGG | - | chr2.4:69507600-69507619 | MS.gene01669:intron | 35.0% | |
| CATGAAATGACATGGAAACA+TGG | + | chr2.4:69506634-69506653 | None:intergenic | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | - | chr2.4:69508983-69509002 | MS.gene01669:intron | 35.0% | |
| CTCTTGACCACATATTTAAG+AGG | + | chr2.4:69506864-69506883 | None:intergenic | 35.0% | |
| GAAAGGAATTTGACACTCAT+TGG | + | chr2.4:69509323-69509342 | None:intergenic | 35.0% | |
| GATCAATATCAGCTAAAAGG+GGG | + | chr2.4:69509760-69509779 | None:intergenic | 35.0% | |
| GATGGGAAAAAGTTTACTTG+AGG | - | chr2.4:69509377-69509396 | MS.gene01669:intron | 35.0% | |
| GGATCAATATCAGCTAAAAG+GGG | + | chr2.4:69509761-69509780 | None:intergenic | 35.0% | |
| TATATGACAACCTGGGTTAT+GGG | - | chr2.4:69507436-69507455 | MS.gene01669:CDS | 35.0% | |
| TTGCTTAACATGTGCCTTAA+GGG | + | chr2.4:69508975-69508994 | None:intergenic | 35.0% | |
| ! | CTTTTGAATTTCAGAAGCGA+TGG | - | chr2.4:69508827-69508846 | MS.gene01669:intron | 35.0% |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | + | chr2.4:69507681-69507700 | None:intergenic | 35.0% |
| ! | TGCTTTGACAGTTTTCTTTG+GGG | - | chr2.4:69508075-69508094 | MS.gene01669:intron | 35.0% |
| !! | AAGTAAACTTTTTCCCATCC+AGG | + | chr2.4:69509376-69509395 | None:intergenic | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr2.4:69509097-69509116 | MS.gene01669:intron | 35.0% |
| !! | AGTAAACTTTTTCCCATCCA+GGG | + | chr2.4:69509375-69509394 | None:intergenic | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr2.4:69509098-69509117 | MS.gene01669:intron | 35.0% |
| !! | GTTGCTTTGACAGTTTTCTT+TGG | - | chr2.4:69508073-69508092 | MS.gene01669:intron | 35.0% |
| !!! | CTCCATTGTCTCCTTTTTTA+AGG | - | chr2.4:69508174-69508193 | MS.gene01669:CDS | 35.0% |
| AAGTCGTGCTTCTTCATCTA+TGG | + | chr2.4:69508887-69508906 | None:intergenic | 40.0% | |
| AATGCCTTCAGTGGATCATT+TGG | + | chr2.4:69509782-69509801 | None:intergenic | 40.0% | |
| AGTCGTGCTTCTTCATCTAT+GGG | + | chr2.4:69508886-69508905 | None:intergenic | 40.0% | |
| ATCAAATGAGCTCGTGTGAT+AGG | - | chr2.4:69507937-69507956 | MS.gene01669:intron | 40.0% | |
| GTTGCTTAACATGTGCCTTA+AGG | + | chr2.4:69508976-69508995 | None:intergenic | 40.0% | |
| GTTTGCATCTCACTAATGGA+GGG | - | chr2.4:69509657-69509676 | MS.gene01669:intron | 40.0% | |
| TACCGTACGAGAGAAATAGT+TGG | + | chr2.4:69506583-69506602 | None:intergenic | 40.0% | |
| TAGGAGAGAGAATCCACTAT+GGG | - | chr2.4:69506919-69506938 | MS.gene01669:CDS | 40.0% | |
| TCGATCACTGAAGAATCCTT+TGG | - | chr2.4:69506531-69506550 | MS.gene01669:CDS | 40.0% | |
| TGATCCAAATGATCCACTGA+AGG | - | chr2.4:69509775-69509794 | MS.gene01669:CDS | 40.0% | |
| TGCTAAAGCATGCATTTCTG+TGG | - | chr2.4:69509297-69509316 | MS.gene01669:intron | 40.0% | |
| TGTTCCTCTTCATGAGTACA+AGG | - | chr2.4:69508141-69508160 | MS.gene01669:CDS | 40.0% | |
| TTAGGAGAGAGAATCCACTA+TGG | - | chr2.4:69506918-69506937 | MS.gene01669:CDS | 40.0% | |
| TTGTCCTTGTACTCATGAAG+AGG | + | chr2.4:69508148-69508167 | None:intergenic | 40.0% | |
| TTGTTTGTGAACAATCCGGA+GGG | - | chr2.4:69509238-69509257 | MS.gene01669:intron | 40.0% | |
| TTTACCAAACACACCCATAG+TGG | + | chr2.4:69506935-69506954 | None:intergenic | 40.0% | |
| TTTGTTTGTGAACAATCCGG+AGG | - | chr2.4:69509237-69509256 | MS.gene01669:intron | 40.0% | |
| ! | ACTGAAGAATCCTTTGGTGT+TGG | - | chr2.4:69506537-69506556 | MS.gene01669:CDS | 40.0% |
| ! | AGGGTTTTTCCAGTATCACA+TGG | - | chr2.4:69508022-69508041 | MS.gene01669:intron | 40.0% |
| ! | GTTTTTCCAGTATCACATGG+CGG | - | chr2.4:69508025-69508044 | MS.gene01669:intron | 40.0% |
| ! | TAGATGAAGAAGCACGACTT+AGG | - | chr2.4:69508887-69508906 | MS.gene01669:intron | 40.0% |
| ! | TGCCAACTATTTCTCTCGTA+CGG | - | chr2.4:69506578-69506597 | MS.gene01669:CDS | 40.0% |
| ! | TGTGAGTCTAGAATCTATGC+AGG | - | chr2.4:69509727-69509746 | MS.gene01669:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr2.4:69509115-69509134 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+AGG | - | chr2.4:69508958-69508977 | MS.gene01669:intron | 40.0% |
| AAAAGGAGACAATGGAGCGA+AGG | + | chr2.4:69508171-69508190 | None:intergenic | 45.0% | |
| ACTAAAATGCAACGGTTCCC+TGG | - | chr2.4:69509355-69509374 | MS.gene01669:intron | 45.0% | |
| ATCGTGGGTATAACACACGA+TGG | - | chr2.4:69507981-69508000 | MS.gene01669:intron | 45.0% | |
| CAAAGCAACAGGAGCAGTTT+CGG | + | chr2.4:69508062-69508081 | None:intergenic | 45.0% | |
| CTATGGGAGGAGGAGTTATA+AGG | + | chr2.4:69508870-69508889 | None:intergenic | 45.0% | |
| GAAAGGACAAATGAAGCTGC+TGG | - | chr2.4:69509268-69509287 | MS.gene01669:intron | 45.0% | |
| GAATCCACTATGGGTGTGTT+TGG | - | chr2.4:69506928-69506947 | MS.gene01669:CDS | 45.0% | |
| GACGGTTTGCATCTCACTAA+TGG | - | chr2.4:69509653-69509672 | MS.gene01669:intron | 45.0% | |
| GCAGCTTCATTTGTCCTTTC+AGG | + | chr2.4:69509268-69509287 | None:intergenic | 45.0% | |
| GGTTTGCATCTCACTAATGG+AGG | - | chr2.4:69509656-69509675 | MS.gene01669:intron | 45.0% | |
| TCGTGGGTATAACACACGAT+GGG | - | chr2.4:69507982-69508001 | MS.gene01669:intron | 45.0% | |
| TGTTTGTGAACAATCCGGAG+GGG | - | chr2.4:69509239-69509258 | MS.gene01669:intron | 45.0% | |
| !! | AATCCTTTGGTGTTGGAGGA+TGG | - | chr2.4:69506544-69506563 | MS.gene01669:CDS | 45.0% |
| !! | ATCCTTTGGTGTTGGAGGAT+GGG | - | chr2.4:69506545-69506564 | MS.gene01669:CDS | 45.0% |
| !! | GAAGAATCCTTTGGTGTTGG+AGG | - | chr2.4:69506540-69506559 | MS.gene01669:CDS | 45.0% |
| !!! | TATTTTTTAATTTCAATTAT+AGG | - | chr2.4:69508762-69508781 | MS.gene01669:intron | 5.0% |
| AAATGCAACGGTTCCCTGGA+TGG | - | chr2.4:69509359-69509378 | MS.gene01669:intron | 50.0% | |
| AATGCAACGGTTCCCTGGAT+GGG | - | chr2.4:69509360-69509379 | MS.gene01669:intron | 50.0% | |
| ACCTGGGTTATGGGTAAACG+TGG | - | chr2.4:69507445-69507464 | MS.gene01669:intron | 50.0% | |
| AGGCTGATGTGGTGTTCAGA+GGG | - | chr2.4:69507957-69507976 | MS.gene01669:intron | 50.0% | |
| CGTGCTTCTTCATCTATGGG+AGG | + | chr2.4:69508883-69508902 | None:intergenic | 50.0% | |
| GCTTCTTCATCTATGGGAGG+AGG | + | chr2.4:69508880-69508899 | None:intergenic | 50.0% | |
| TAGGCTGATGTGGTGTTCAG+AGG | - | chr2.4:69507956-69507975 | MS.gene01669:intron | 50.0% | |
| TCCACGTTTACCCATAACCC+AGG | + | chr2.4:69507449-69507468 | None:intergenic | 50.0% | |
| !! | GGCACTGAAGGTGTTGGAAA+GGG | - | chr2.4:69508003-69508022 | MS.gene01669:intron | 50.0% |
| !! | TAACACACGATGGGCACTGA+AGG | - | chr2.4:69507991-69508010 | MS.gene01669:intron | 50.0% |
| !! | TCCTTTGGTGTTGGAGGATG+GGG | - | chr2.4:69506546-69506565 | MS.gene01669:CDS | 50.0% |
| !! | TGGTGTTCAGAGGGTATCGT+GGG | - | chr2.4:69507966-69507985 | MS.gene01669:intron | 50.0% |
| ACCCCATCCTCCAACACCAA+AGG | + | chr2.4:69506550-69506569 | None:intergenic | 55.0% | |
| AGTATCACATGGCGGTGACG+AGG | - | chr2.4:69508033-69508052 | MS.gene01669:intron | 55.0% | |
| GCTCGTGTGATAGGCTGATG+TGG | - | chr2.4:69507946-69507965 | MS.gene01669:intron | 55.0% | |
| GTATCACATGGCGGTGACGA+GGG | - | chr2.4:69508034-69508053 | MS.gene01669:intron | 55.0% | |
| TCGTCACCGCCATGTGATAC+TGG | + | chr2.4:69508034-69508053 | None:intergenic | 55.0% | |
| !! | ACGATGGGCACTGAAGGTGT+TGG | - | chr2.4:69507997-69508016 | MS.gene01669:intron | 55.0% |
| !! | GGGCACTGAAGGTGTTGGAA+AGG | - | chr2.4:69508002-69508021 | MS.gene01669:intron | 55.0% |
| !! | GTGGTGTTCAGAGGGTATCG+TGG | - | chr2.4:69507965-69507984 | MS.gene01669:intron | 55.0% |
| ATCCGGAGGGGCTTCCTGAA+AGG | - | chr2.4:69509251-69509270 | MS.gene01669:intron | 60.0% | |
| GTCCTTTCAGGAAGCCCCTC+CGG | + | chr2.4:69509256-69509275 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 69506495 | 69509808 | 69506495 | ID=MS.gene01669 |
| chr2.4 | mRNA | 69506495 | 69509808 | 69506495 | ID=MS.gene01669.t1;Parent=MS.gene01669 |
| chr2.4 | exon | 69509704 | 69509808 | 69509704 | ID=MS.gene01669.t1.exon1;Parent=MS.gene01669.t1 |
| chr2.4 | CDS | 69509704 | 69509808 | 69509704 | ID=cds.MS.gene01669.t1;Parent=MS.gene01669.t1 |
| chr2.4 | exon | 69508279 | 69508344 | 69508279 | ID=MS.gene01669.t1.exon2;Parent=MS.gene01669.t1 |
| chr2.4 | CDS | 69508279 | 69508344 | 69508279 | ID=cds.MS.gene01669.t1;Parent=MS.gene01669.t1 |
| chr2.4 | exon | 69508108 | 69508248 | 69508108 | ID=MS.gene01669.t1.exon3;Parent=MS.gene01669.t1 |
| chr2.4 | CDS | 69508108 | 69508248 | 69508108 | ID=cds.MS.gene01669.t1;Parent=MS.gene01669.t1 |
| chr2.4 | exon | 69507395 | 69507462 | 69507395 | ID=MS.gene01669.t1.exon4;Parent=MS.gene01669.t1 |
| chr2.4 | CDS | 69507395 | 69507462 | 69507395 | ID=cds.MS.gene01669.t1;Parent=MS.gene01669.t1 |
| chr2.4 | exon | 69506905 | 69507069 | 69506905 | ID=MS.gene01669.t1.exon5;Parent=MS.gene01669.t1 |
| chr2.4 | CDS | 69506905 | 69507069 | 69506905 | ID=cds.MS.gene01669.t1;Parent=MS.gene01669.t1 |
| chr2.4 | exon | 69506495 | 69506651 | 69506495 | ID=MS.gene01669.t1.exon6;Parent=MS.gene01669.t1 |
| chr2.4 | CDS | 69506495 | 69506651 | 69506495 | ID=cds.MS.gene01669.t1;Parent=MS.gene01669.t1 |
| Gene Sequence |
| Protein sequence |
