Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017617.t1 | XP_024629212.1 | 97.1 | 1018 | 30 | 0 | 1 | 1018 | 1 | 1018 | 0.00E+00 | 2014.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017617.t1 | C0HJB3 | 77.9 | 987 | 210 | 3 | 33 | 1018 | 2 | 981 | 0.0e+00 | 1580.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017617.t1 | G7LB83 | 97.1 | 1018 | 30 | 0 | 1 | 1018 | 1 | 1018 | 0.0e+00 | 2014.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017617 | MS.gene065392 | PPI |
| MS.gene017617 | MS.gene024279 | PPI |
| MS.gene017617 | MS.gene73391 | PPI |
| MS.gene017617 | MS.gene033712 | PPI |
| MS.gene017617 | MS.gene033714 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017617.t1 | MTR_8g075330 | 97.053 | 1018 | 30 | 0 | 1 | 1018 | 1 | 1018 | 0.0 | 2067 |
| MS.gene017617.t1 | MTR_7g084030 | 60.336 | 1011 | 386 | 8 | 13 | 1018 | 51 | 1051 | 0.0 | 1262 |
| MS.gene017617.t1 | MTR_7g084040 | 58.893 | 1012 | 397 | 5 | 15 | 1018 | 7 | 1007 | 0.0 | 1253 |
| MS.gene017617.t1 | MTR_3g098650 | 60.460 | 999 | 377 | 9 | 29 | 1018 | 25 | 1014 | 0.0 | 1247 |
| MS.gene017617.t1 | MTR_7g084030 | 61.710 | 807 | 304 | 3 | 13 | 818 | 6 | 808 | 0.0 | 1055 |
| MS.gene017617.t1 | MTR_6g008850 | 29.419 | 860 | 489 | 28 | 44 | 827 | 138 | 955 | 3.89e-90 | 313 |
| MS.gene017617.t1 | MTR_4g071680 | 28.256 | 860 | 486 | 30 | 44 | 827 | 138 | 942 | 1.70e-78 | 279 |
| MS.gene017617.t1 | MTR_3g013720 | 67.347 | 49 | 16 | 0 | 56 | 104 | 11 | 59 | 2.05e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017617.t1 | AT5G66150 | 66.369 | 1008 | 315 | 4 | 30 | 1018 | 32 | 1034 | 0.0 | 1388 |
| MS.gene017617.t1 | AT5G66150 | 66.303 | 1009 | 315 | 5 | 30 | 1018 | 32 | 1035 | 0.0 | 1383 |
| MS.gene017617.t1 | AT3G26720 | 59.762 | 1009 | 392 | 6 | 12 | 1018 | 7 | 1003 | 0.0 | 1251 |
| MS.gene017617.t1 | AT5G13980 | 58.522 | 1015 | 401 | 7 | 14 | 1018 | 6 | 1010 | 0.0 | 1207 |
| MS.gene017617.t1 | AT5G13980 | 58.522 | 1015 | 401 | 7 | 14 | 1018 | 6 | 1010 | 0.0 | 1207 |
| MS.gene017617.t1 | AT3G26720 | 59.539 | 954 | 376 | 4 | 12 | 965 | 7 | 950 | 0.0 | 1187 |
| MS.gene017617.t1 | AT3G26720 | 59.958 | 944 | 368 | 4 | 12 | 955 | 7 | 940 | 0.0 | 1184 |
| MS.gene017617.t1 | AT3G26720 | 59.870 | 922 | 360 | 4 | 12 | 933 | 7 | 918 | 0.0 | 1156 |
| MS.gene017617.t1 | AT3G26720 | 59.870 | 922 | 360 | 4 | 12 | 933 | 7 | 918 | 0.0 | 1154 |
| MS.gene017617.t1 | AT5G13980 | 59.395 | 926 | 360 | 5 | 14 | 933 | 6 | 921 | 0.0 | 1130 |
| MS.gene017617.t1 | AT5G66150 | 63.271 | 746 | 249 | 5 | 293 | 1018 | 1 | 741 | 0.0 | 961 |
| MS.gene017617.t1 | AT5G14950 | 29.582 | 862 | 492 | 28 | 42 | 827 | 150 | 972 | 1.39e-89 | 311 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTTGTTCTTGTGTTTC+TGG | 0.042893 | 8.2:+29753258 | None:intergenic |
| ATTATATGTAAAGGCCTATT+TGG | 0.105844 | 8.2:-29748950 | MS.gene017617:CDS |
| TGGTGACTTTGTTCCCTTAC+AGG | 0.122764 | 8.2:-29751086 | MS.gene017617:intron |
| TGAAATAGAAGCCAATATTT+TGG | 0.159463 | 8.2:+29748907 | None:intergenic |
| AATCCGAACATATCGCTTTA+AGG | 0.183139 | 8.2:+29750151 | None:intergenic |
| AGAAATCACTTGAAGTTATT+TGG | 0.183366 | 8.2:-29751204 | MS.gene017617:CDS |
| AATTTACTCACCAGTCTTAT+TGG | 0.190851 | 8.2:-29746672 | MS.gene017617:CDS |
| GATTCTAAGTGGATACTATT+TGG | 0.198412 | 8.2:-29750132 | MS.gene017617:intron |
| ATGATTGACCAAACAACTTT+AGG | 0.232196 | 8.2:-29752691 | MS.gene017617:CDS |
| CTAAAGTAGCTTTGCTGAAT+TGG | 0.234744 | 8.2:+29748497 | None:intergenic |
| TTCATCAGAAGTTTAATTCT+TGG | 0.244314 | 8.2:-29748038 | MS.gene017617:CDS |
| TTAGGAGGCAAGCTGTAATT+TGG | 0.255269 | 8.2:+29746483 | None:intergenic |
| CTTCTCTTGATTTGTTACTA+TGG | 0.271293 | 8.2:-29753839 | MS.gene017617:CDS |
| CACCCATTGTCCACATGATA+TGG | 0.273078 | 8.2:+29750595 | None:intergenic |
| AATGACATCTTTAAATTTCC+CGG | 0.289249 | 8.2:+29748675 | None:intergenic |
| ACCGGGGCTGGTATTGTTAA+AGG | 0.290654 | 8.2:-29753785 | MS.gene017617:CDS |
| TTTCAAGTTCCTTACCTTAG+AGG | 0.290852 | 8.2:+29749839 | None:intergenic |
| GGTTGGCAGATTGATCCTTT+TGG | 0.295379 | 8.2:-29752625 | MS.gene017617:CDS |
| ATTAATCCACTATGTTAATA+AGG | 0.300775 | 8.2:-29750523 | MS.gene017617:intron |
| GTTTCCACTTGATAGGTATA+AGG | 0.307766 | 8.2:-29748755 | MS.gene017617:intron |
| TCTAATTCTACATAGGTTAG+AGG | 0.312818 | 8.2:-29746761 | MS.gene017617:intron |
| TGATTGACCAAACAACTTTA+GGG | 0.316065 | 8.2:-29752690 | MS.gene017617:CDS |
| CACGAGGGGTTGTATTAAAT+TGG | 0.322682 | 8.2:+29752650 | None:intergenic |
| CAAAACAAGCCCCAAAATAT+TGG | 0.322873 | 8.2:-29748918 | MS.gene017617:CDS |
| GCAAACACAAACTTTCTGTT+TGG | 0.329089 | 8.2:+29753500 | None:intergenic |
| GAAGTTTCTTACTCCAGTTT+TGG | 0.329536 | 8.2:+29748614 | None:intergenic |
| CAATTCAGCAAAGCTACTTT+AGG | 0.330227 | 8.2:-29748496 | MS.gene017617:CDS |
| AGCAGTTGTTAGCTCTTCTT+TGG | 0.334571 | 8.2:-29749718 | MS.gene017617:CDS |
| TGGCTCCAACAATTCCATTC+AGG | 0.334713 | 8.2:-29753687 | MS.gene017617:intron |
| TTTAGGGCATCGCTTTATAA+AGG | 0.337081 | 8.2:-29752674 | MS.gene017617:CDS |
| CGGATGTATAATTCCAAAAC+TGG | 0.343864 | 8.2:-29748627 | MS.gene017617:CDS |
| CACTTCACCGTCTTTGATGC+TGG | 0.350461 | 8.2:+29747082 | None:intergenic |
| CACAAGAATGACAGCAAATA+TGG | 0.350745 | 8.2:-29747661 | MS.gene017617:CDS |
| TTGGCATTGGTGTAAATAGA+TGG | 0.353346 | 8.2:+29750364 | None:intergenic |
| TTTATCAGAAAGCAGAAAAC+TGG | 0.357085 | 8.2:-29746542 | MS.gene017617:intron |
| TTATCTGTCCAGCTCAATCT+TGG | 0.357436 | 8.2:-29747167 | MS.gene017617:intron |
| TCGACTTTAGAGGATACTTT+TGG | 0.359250 | 8.2:-29749963 | MS.gene017617:CDS |
| CTCTAAAGTCGATCTCTTAC+CGG | 0.362128 | 8.2:+29749974 | None:intergenic |
| CATTCCACAGGCTAAAGATT+TGG | 0.365954 | 8.2:-29749384 | MS.gene017617:intron |
| GAAGTCAGAAATGAAGAAAA+TGG | 0.366126 | 8.2:-29745881 | MS.gene017617:CDS |
| TTATATGTAAAGGCCTATTT+GGG | 0.366264 | 8.2:-29748949 | MS.gene017617:CDS |
| GAGCACTTACTTCATTTCTA+AGG | 0.367741 | 8.2:-29748860 | MS.gene017617:CDS |
| GTCTTTGATGCTGGCTCCAC+CGG | 0.369918 | 8.2:+29747091 | None:intergenic |
| TCTTCATTTCTGACTTCTCT+TGG | 0.370190 | 8.2:+29745887 | None:intergenic |
| CGGTAAGAGATCGACTTTAG+AGG | 0.374415 | 8.2:-29749973 | MS.gene017617:CDS |
| TGGATCCATGAGAGTTCCTT+TGG | 0.376062 | 8.2:+29746503 | None:intergenic |
| TGGCGTGGCTCTAAAACATT+TGG | 0.377471 | 8.2:-29751184 | MS.gene017617:CDS |
| GAATATTGAGCATCTTCATT+TGG | 0.378827 | 8.2:+29746079 | None:intergenic |
| TCACGCTGGCGCCGTACAAC+TGG | 0.386230 | 8.2:-29746701 | MS.gene017617:CDS |
| GTCATCAGTTGTATGTTGTT+TGG | 0.389959 | 8.2:+29749887 | None:intergenic |
| ATTGGCTATTGGAGCCTCTA+AGG | 0.390158 | 8.2:-29749853 | MS.gene017617:intron |
| TGATTTCTTCTGTAGGCATC+TGG | 0.397688 | 8.2:-29748365 | MS.gene017617:intron |
| GGTTTCAACTTTGAAGTCTC+TGG | 0.401096 | 8.2:-29751106 | MS.gene017617:CDS |
| GTTAGAGGAAATTACTATAT+CGG | 0.403159 | 8.2:-29746746 | MS.gene017617:CDS |
| TGATCACCGGATTTCTTACT+AGG | 0.404936 | 8.2:+29749687 | None:intergenic |
| TACTGGTATTCTGACTATAT+CGG | 0.408684 | 8.2:+29749144 | None:intergenic |
| ACTGATCTTGAAATAATAGT+TGG | 0.409663 | 8.2:+29748311 | None:intergenic |
| CGACACAGGTTCGAGATCAT+AGG | 0.414568 | 8.2:-29747509 | MS.gene017617:intron |
| TGGAATTGTTCTTCTCCGTT+TGG | 0.414621 | 8.2:-29746357 | MS.gene017617:CDS |
| AGAGTTATCAAGGCAACATT+AGG | 0.415243 | 8.2:+29746465 | None:intergenic |
| CCCTTACCTTATTAACATAG+TGG | 0.416239 | 8.2:+29750517 | None:intergenic |
| TACTTCATTTCTAAGGCAGC+TGG | 0.419682 | 8.2:-29748853 | MS.gene017617:CDS |
| TATGCGAAACGATTGGCTAT+TGG | 0.422136 | 8.2:-29749864 | MS.gene017617:CDS |
| AACCATATCATGTGGACAAT+GGG | 0.425505 | 8.2:-29750597 | MS.gene017617:CDS |
| TTTCTTTGTTGGAACCTGTA+AGG | 0.426076 | 8.2:+29751072 | None:intergenic |
| AAAGTTTGTGTTTGCAGAGA+TGG | 0.431473 | 8.2:-29753492 | MS.gene017617:intron |
| TGAACCAAGACTCTGCATAT+TGG | 0.432026 | 8.2:+29750559 | None:intergenic |
| CCGTTTGGCACATCTATATG+AGG | 0.432117 | 8.2:-29746342 | MS.gene017617:intron |
| TGCAGCAGCTAAAGTCTTTG+TGG | 0.432176 | 8.2:+29753883 | None:intergenic |
| TATCTGTCCAGCTCAATCTT+GGG | 0.432754 | 8.2:-29747166 | MS.gene017617:intron |
| AGCGATGCCCTAAAGTTGTT+TGG | 0.434754 | 8.2:+29752683 | None:intergenic |
| AAGTGGAATTGATGCTTCAT+AGG | 0.440066 | 8.2:-29747064 | MS.gene017617:intron |
| CAGTGGCCACAACTGGTTTG+CGG | 0.443170 | 8.2:+29750336 | None:intergenic |
| CTGATGGAGCAAATGCATAC+TGG | 0.446179 | 8.2:-29750199 | MS.gene017617:CDS |
| ATTTCTAAGGCAGCTGGAAA+AGG | 0.447449 | 8.2:-29748847 | MS.gene017617:intron |
| GACAAGAACCTCAAGCAGTA+AGG | 0.456135 | 8.2:-29745834 | MS.gene017617:CDS |
| GCGGTCCAAGGTTACCTACT+TGG | 0.459802 | 8.2:-29752595 | MS.gene017617:CDS |
| TGATATGCAGGTGCCCTTCA+AGG | 0.460593 | 8.2:-29748088 | MS.gene017617:intron |
| TTGATAGGTATAAGGAGAAA+AGG | 0.463996 | 8.2:-29748747 | MS.gene017617:intron |
| GGATAGTAGTTTCCTGCTAC+AGG | 0.464263 | 8.2:+29747459 | None:intergenic |
| TGTTGTTGAGCTTGGTCCTA+TGG | 0.466620 | 8.2:-29745785 | MS.gene017617:CDS |
| TTTAAGAAAATTATATGTAA+AGG | 0.468019 | 8.2:-29748959 | MS.gene017617:CDS |
| TTTCAGAAAATCCCTTCCAT+TGG | 0.471075 | 8.2:+29747611 | None:intergenic |
| TGTGGAGCACTATAATGAAC+AGG | 0.475976 | 8.2:+29751130 | None:intergenic |
| TTCTGTTTGGATCCTTCTGA+AGG | 0.477706 | 8.2:+29753513 | None:intergenic |
| TATAACCTGAATGGAATTGT+TGG | 0.477992 | 8.2:+29753682 | None:intergenic |
| ATAAATGATTATAACCTGAA+TGG | 0.478548 | 8.2:+29753673 | None:intergenic |
| ATATACCTCAAGAGTTATCA+AGG | 0.478631 | 8.2:+29746455 | None:intergenic |
| GGGTGACAATACTGATTCTC+AGG | 0.479993 | 8.2:-29748459 | MS.gene017617:intron |
| TTCTTTGTTGGAACCTGTAA+GGG | 0.480045 | 8.2:+29751073 | None:intergenic |
| AGGAAAATTGAACGTTCACT+TGG | 0.480310 | 8.2:-29753765 | MS.gene017617:CDS |
| AAGACTCTGCATATTGGTAC+TGG | 0.486443 | 8.2:+29750565 | None:intergenic |
| TTTGACACGTTGTTCAACAT+TGG | 0.488889 | 8.2:+29750946 | None:intergenic |
| TTTGGCCTTGGAGATGCTCT+AGG | 0.491156 | 8.2:-29749945 | MS.gene017617:CDS |
| CAGCAAAGCTACTTTAGGTA+TGG | 0.493274 | 8.2:-29748491 | MS.gene017617:CDS |
| TGTGGAATGCTGTCTTCTGT+TGG | 0.496724 | 8.2:+29749398 | None:intergenic |
| TCCTTTAACAATACCAGCCC+CGG | 0.500351 | 8.2:+29753784 | None:intergenic |
| GGAATCCACAACATTGGATC+TGG | 0.501460 | 8.2:-29746725 | MS.gene017617:CDS |
| AAAGTTACTCAGCCTGTAGC+AGG | 0.503072 | 8.2:-29747471 | MS.gene017617:CDS |
| CAACCTCTGGACAACTCAAA+CGG | 0.503583 | 8.2:-29748647 | MS.gene017617:CDS |
| AGAGTCTTGGTTCAAGCAAA+TGG | 0.505251 | 8.2:-29750550 | MS.gene017617:CDS |
| AAAATGGCATGGAAGGTTGA+AGG | 0.505845 | 8.2:-29745865 | MS.gene017617:CDS |
| TCTCACCATTCTTACTGTTG+AGG | 0.506377 | 8.2:+29748712 | None:intergenic |
| GGAATGCTGTCTTCTGTTGG+AGG | 0.506724 | 8.2:+29749401 | None:intergenic |
| ACAAAGTACAACACCGGGGC+TGG | 0.507473 | 8.2:-29753797 | MS.gene017617:CDS |
| ACTCCATCATCGGTAGGAAT+CGG | 0.507609 | 8.2:+29747699 | None:intergenic |
| CGGTCCACGAATTACCTTGA+AGG | 0.508635 | 8.2:+29748074 | None:intergenic |
| AGGACGACGGTAGAGGAGTA+GGG | 0.510321 | 8.2:-29746947 | MS.gene017617:CDS |
| GAGGACGACGGTAGAGGAGT+AGG | 0.514200 | 8.2:-29746948 | MS.gene017617:CDS |
| GGTCCGATTCCTACCGATGA+TGG | 0.515528 | 8.2:-29747702 | MS.gene017617:CDS |
| TAACGTTGAAATACAGTATG+TGG | 0.517950 | 8.2:-29749004 | MS.gene017617:CDS |
| AGTACCAATATGCAGAGTCT+TGG | 0.519215 | 8.2:-29750563 | MS.gene017617:CDS |
| CAGCACCATGATGCGGTGAC+TGG | 0.519744 | 8.2:-29749915 | MS.gene017617:CDS |
| GTCTTAGTTGATCGTGCCAC+CGG | 0.520403 | 8.2:-29747110 | MS.gene017617:CDS |
| CGGCCTTAAAGCGATATGTT+CGG | 0.520755 | 8.2:-29750154 | MS.gene017617:CDS |
| GAGAACATTGACATCGGACC+GGG | 0.521614 | 8.2:-29748693 | MS.gene017617:CDS |
| AAATTTCTTGACCAGTTGTA+CGG | 0.522189 | 8.2:+29746690 | None:intergenic |
| TCTTACTGTTGAGGTGTGAG+AGG | 0.523199 | 8.2:+29748721 | None:intergenic |
| TTTAATACAACCCCTCGTGC+TGG | 0.525147 | 8.2:-29752646 | MS.gene017617:CDS |
| GAACATATCGCTTTAAGGCC+GGG | 0.527144 | 8.2:+29750156 | None:intergenic |
| TTTGGACACTCTGCGGTCCA+AGG | 0.528189 | 8.2:-29752607 | MS.gene017617:CDS |
| GCAGATAAAAGAGTTGAAAG+AGG | 0.528239 | 8.2:-29745926 | MS.gene017617:intron |
| GATAATAATAGTACATGTGA+TGG | 0.528779 | 8.2:-29746888 | MS.gene017617:CDS |
| CTTTAGGTATGGCTCTAGTG+AGG | 0.529620 | 8.2:-29748480 | MS.gene017617:CDS |
| ACTGTTGATCAATACTATGT+TGG | 0.529854 | 8.2:-29753707 | MS.gene017617:CDS |
| CAGCACCAAGTAGGTAACCT+TGG | 0.533551 | 8.2:+29752590 | None:intergenic |
| ACAAGAACCTCAAGCAGTAA+GGG | 0.535520 | 8.2:-29745833 | MS.gene017617:CDS |
| TCACACCTCAACAGTAAGAA+TGG | 0.536175 | 8.2:-29748717 | MS.gene017617:CDS |
| AATGAAGAAAATGGCATGGA+AGG | 0.536544 | 8.2:-29745872 | MS.gene017617:CDS |
| TAAGCCAACCAACATCATCA+TGG | 0.537764 | 8.2:+29753732 | None:intergenic |
| AGTTCCTTTGGTTAAATGAG+AGG | 0.539673 | 8.2:+29746515 | None:intergenic |
| TATCGGTACGATTCCATCCA+AGG | 0.540459 | 8.2:+29749161 | None:intergenic |
| GTTTAATTCTTGGATTTACC+AGG | 0.541252 | 8.2:-29748028 | MS.gene017617:intron |
| TTTATACTGATTCCAATGGA+AGG | 0.541284 | 8.2:-29747623 | MS.gene017617:CDS |
| TTTAACCAAAGGAACTCTCA+TGG | 0.542454 | 8.2:-29746508 | MS.gene017617:CDS |
| TTCGAGATCATAGGGAAGAC+TGG | 0.542554 | 8.2:-29747500 | MS.gene017617:CDS |
| ACAGGCTGAGTAACTTTAAG+TGG | 0.544000 | 8.2:+29747477 | None:intergenic |
| GTGCCCTTCAAGGTAATTCG+TGG | 0.546167 | 8.2:-29748078 | MS.gene017617:CDS |
| TTGATCGAGGACGACGGTAG+AGG | 0.546178 | 8.2:-29746954 | MS.gene017617:CDS |
| CGAACATATCGCTTTAAGGC+CGG | 0.548372 | 8.2:+29750155 | None:intergenic |
| TGTCTTCCTAGTAAGAAATC+CGG | 0.549461 | 8.2:-29749693 | MS.gene017617:CDS |
| TTATACTGATTCCAATGGAA+GGG | 0.550949 | 8.2:-29747622 | MS.gene017617:CDS |
| TTTGATGCTGGCTCCACCGG+TGG | 0.551526 | 8.2:+29747094 | None:intergenic |
| TGGACCGCAGAGTGTCCAAA+AGG | 0.554538 | 8.2:+29752610 | None:intergenic |
| GACACAGGTTCGAGATCATA+GGG | 0.555465 | 8.2:-29747508 | MS.gene017617:intron |
| ATCGGTACGATTCCATCCAA+GGG | 0.556443 | 8.2:+29749162 | None:intergenic |
| GGAGCAAATGCATACTGGAC+CGG | 0.558077 | 8.2:-29750194 | MS.gene017617:CDS |
| CTTGTGGTGAAAGATTCATC+TGG | 0.558232 | 8.2:-29749030 | MS.gene017617:CDS |
| TGTTGCCTTGATAACTCTTG+AGG | 0.559803 | 8.2:-29746460 | MS.gene017617:intron |
| AAATGGCATGGAAGGTTGAA+GGG | 0.560769 | 8.2:-29745864 | MS.gene017617:CDS |
| AAACCATATCATGTGGACAA+TGG | 0.561179 | 8.2:-29750598 | MS.gene017617:CDS |
| CAGTGCCAGTCACCGCATCA+TGG | 0.562460 | 8.2:+29749910 | None:intergenic |
| CAATCTTGGGATTTATACAA+AGG | 0.564764 | 8.2:-29747153 | MS.gene017617:CDS |
| ACAAAATCTGAAGTGCTGAC+AGG | 0.566375 | 8.2:+29745805 | None:intergenic |
| CCACACTCCCATGATGATGT+TGG | 0.566834 | 8.2:-29753740 | MS.gene017617:CDS |
| CGATGATGGAGTAGGAAAAG+AGG | 0.568194 | 8.2:-29747688 | MS.gene017617:CDS |
| TGTCAATACCTCCACTCGGA+TGG | 0.568278 | 8.2:-29748882 | MS.gene017617:CDS |
| TGATGACTATGCGAAACGAT+TGG | 0.569779 | 8.2:-29749871 | MS.gene017617:CDS |
| CGATATGTTCGGATTCTAAG+TGG | 0.570160 | 8.2:-29750143 | MS.gene017617:CDS |
| AAAATGCCGCAAACCAGTTG+TGG | 0.570790 | 8.2:-29750342 | MS.gene017617:CDS |
| AGCAAATATGGTCACAAACA+AGG | 0.571309 | 8.2:-29747649 | MS.gene017617:CDS |
| ATTTCTCATAGGTATGCTGA+TGG | 0.571547 | 8.2:-29750215 | MS.gene017617:intron |
| CAGAAATGAAGAAAATGGCA+TGG | 0.572073 | 8.2:-29745876 | MS.gene017617:CDS |
| GGACTACCCCTTACTGCTTG+AGG | 0.573385 | 8.2:+29745826 | None:intergenic |
| TTTGTTCTACCCACCATCGA+TGG | 0.574017 | 8.2:+29753283 | None:intergenic |
| TCTGTTTGGATCCTTCTGAA+GGG | 0.574391 | 8.2:+29753514 | None:intergenic |
| CATACACAAAGTACAACACC+GGG | 0.574852 | 8.2:-29753802 | MS.gene017617:CDS |
| ATTACCAAATCTTTAGCCTG+TGG | 0.575869 | 8.2:+29749380 | None:intergenic |
| GATTTGTATTCAGGTAGTTG+TGG | 0.577810 | 8.2:-29749194 | MS.gene017617:intron |
| CTACTTAAGGCGCTTGATCG+AGG | 0.577909 | 8.2:-29746967 | MS.gene017617:intron |
| GTTCATTATAGTGCTCCACA+TGG | 0.578573 | 8.2:-29751127 | MS.gene017617:CDS |
| TTTCCTACTCCATCATCGGT+AGG | 0.579151 | 8.2:+29747693 | None:intergenic |
| GGTCAATCATGTCTATGTAG+TGG | 0.580668 | 8.2:+29752704 | None:intergenic |
| TGAGAACATTGACATCGGAC+CGG | 0.580861 | 8.2:-29748694 | MS.gene017617:CDS |
| TTAGTTGATCGTGCCACCGG+TGG | 0.582532 | 8.2:-29747107 | MS.gene017617:CDS |
| TCGTGGACCGCTAGTTGATG+AGG | 0.582635 | 8.2:-29748061 | MS.gene017617:CDS |
| TCCTCACGGGAAGTAGTCAT+CGG | 0.585743 | 8.2:+29750309 | None:intergenic |
| ACTCCCATGATGATGTTGGT+TGG | 0.586522 | 8.2:-29753736 | MS.gene017617:CDS |
| ATACAACCCCTCGTGCTGGT+TGG | 0.587540 | 8.2:-29752642 | MS.gene017617:CDS |
| TATATCGGAATCCACAACAT+TGG | 0.588118 | 8.2:-29746731 | MS.gene017617:CDS |
| GGTCCACGAATTACCTTGAA+GGG | 0.588939 | 8.2:+29748075 | None:intergenic |
| GTTATCAAGGCAACATTAGG+AGG | 0.593368 | 8.2:+29746468 | None:intergenic |
| ATAATGAACAGGAAAAGTGT+TGG | 0.593523 | 8.2:+29751141 | None:intergenic |
| TGGAAGGTTGAAGGGGACAA+AGG | 0.594417 | 8.2:-29745856 | MS.gene017617:CDS |
| GAATGCTGTCTTCTGTTGGA+GGG | 0.595701 | 8.2:+29749402 | None:intergenic |
| ATAGTTGGAGAGGATTCACT+TGG | 0.596828 | 8.2:+29748326 | None:intergenic |
| AACAGAAGACAGCATTCCAC+AGG | 0.598348 | 8.2:-29749396 | MS.gene017617:CDS |
| AAGCCAACCAACATCATCAT+GGG | 0.600163 | 8.2:+29753733 | None:intergenic |
| ACATTGGAATCAAATAAAAG+AGG | 0.600165 | 8.2:+29750962 | None:intergenic |
| CATCCGTTTGAGTTGTCCAG+AGG | 0.600303 | 8.2:+29748644 | None:intergenic |
| CCTCATATAGATGTGCCAAA+CGG | 0.601534 | 8.2:+29746342 | None:intergenic |
| TCACTTGAAGTTATTTGGCG+TGG | 0.601634 | 8.2:-29751199 | MS.gene017617:CDS |
| TTTAGGTATGGCTCTAGTGA+GGG | 0.603408 | 8.2:-29748479 | MS.gene017617:CDS |
| ATGCAAACTTGTTCATCGAG+TGG | 0.604106 | 8.2:+29746921 | None:intergenic |
| TGAACAAGTTTGCATAGCAA+AGG | 0.606055 | 8.2:-29746913 | MS.gene017617:CDS |
| CTTATTGGCTTTCACACACG+AGG | 0.608767 | 8.2:-29746657 | MS.gene017617:intron |
| CAGTGTATTCAATTTCAGCA+TGG | 0.612815 | 8.2:+29747836 | None:intergenic |
| TCTTGAAATAATAGTTGGAG+AGG | 0.615123 | 8.2:+29748316 | None:intergenic |
| CAAGAACCTCAAGCAGTAAG+GGG | 0.615364 | 8.2:-29745832 | MS.gene017617:CDS |
| ATTCCTACCGATGATGGAGT+AGG | 0.617402 | 8.2:-29747696 | MS.gene017617:CDS |
| AAGTCCTCTCATTTAACCAA+AGG | 0.619829 | 8.2:-29746519 | MS.gene017617:CDS |
| AAGTGCTAAACATTGATCAC+CGG | 0.623215 | 8.2:+29749674 | None:intergenic |
| AGGAAAGTACGTATTTCCAT+AGG | 0.623538 | 8.2:+29745769 | None:intergenic |
| AATAGATGGAGTAGAATACA+AGG | 0.623885 | 8.2:+29750378 | None:intergenic |
| GCATACACAAAGTACAACAC+CGG | 0.627353 | 8.2:-29753803 | MS.gene017617:CDS |
| CAGCATCAAAGACGGTGAAG+TGG | 0.630999 | 8.2:-29747081 | MS.gene017617:CDS |
| GTGTATGCACGATGAAGCCA+CGG | 0.634772 | 8.2:-29752728 | MS.gene017617:CDS |
| TAGGTTACTAGGCTGTACAA+AGG | 0.638409 | 8.2:-29747865 | MS.gene017617:CDS |
| TCAATCTGCCAACCAGCACG+AGG | 0.638439 | 8.2:+29752634 | None:intergenic |
| TTACACGAATTCTAGCTGAC+CGG | 0.638530 | 8.2:+29753221 | None:intergenic |
| AATGGCATGGAAGGTTGAAG+GGG | 0.638747 | 8.2:-29745863 | MS.gene017617:CDS |
| TGTGTGAAAGCCAATAAGAC+TGG | 0.640370 | 8.2:+29746662 | None:intergenic |
| CAAGTGTCAATACCTCCACT+CGG | 0.641411 | 8.2:-29748886 | MS.gene017617:CDS |
| GGTGGAGCCAGCATCAAAGA+CGG | 0.641636 | 8.2:-29747089 | MS.gene017617:CDS |
| AGGTTACCTACTTGGTGCTG+AGG | 0.641981 | 8.2:-29752587 | MS.gene017617:intron |
| AGGCGCTTGATCGAGGACGA+CGG | 0.642101 | 8.2:-29746960 | MS.gene017617:CDS |
| CCAACATCATCATGGGAGTG+TGG | 0.645741 | 8.2:+29753740 | None:intergenic |
| CGAGGACAAACCATATCATG+TGG | 0.647700 | 8.2:-29750605 | MS.gene017617:CDS |
| TAAGTGCTCCATCCGAGTGG+AGG | 0.649027 | 8.2:+29748874 | None:intergenic |
| AATCTGCCAACCAGCACGAG+GGG | 0.650265 | 8.2:+29752636 | None:intergenic |
| GGTTAATGAAGCTAATCTTG+TGG | 0.650521 | 8.2:-29749046 | MS.gene017617:CDS |
| GTGAACCAGATCCAATGTTG+TGG | 0.652079 | 8.2:+29746720 | None:intergenic |
| GTGTCGGCAGAAATGGTGGT+TGG | 0.656017 | 8.2:-29752750 | MS.gene017617:intron |
| GGACGACGGTAGAGGAGTAG+GGG | 0.657442 | 8.2:-29746946 | MS.gene017617:CDS |
| TGATGTGTCGGCAGAAATGG+TGG | 0.661957 | 8.2:-29752754 | MS.gene017617:intron |
| CAATTCCTAGAGCATCTCCA+AGG | 0.662980 | 8.2:+29749940 | None:intergenic |
| CAATCTGCCAACCAGCACGA+GGG | 0.663990 | 8.2:+29752635 | None:intergenic |
| TGAAATACAGTATGTGGACG+TGG | 0.665342 | 8.2:-29748998 | MS.gene017617:CDS |
| AGCATGTGTTGAGAATGTGT+TGG | 0.668971 | 8.2:-29753552 | MS.gene017617:CDS |
| TTGGAGAGGATTCACTTGGG+CGG | 0.670985 | 8.2:+29748330 | None:intergenic |
| CATGTCTATGTAGTGGACCG+TGG | 0.674129 | 8.2:+29752711 | None:intergenic |
| AATTGCACAGCACCATGATG+CGG | 0.678930 | 8.2:-29749922 | MS.gene017617:CDS |
| TACCGACCTCAGCACCAAGT+AGG | 0.684400 | 8.2:+29752581 | None:intergenic |
| ACTTCAAAGTTGAAACCATG+TGG | 0.684452 | 8.2:+29751112 | None:intergenic |
| AAGTAAGTGCTCCATCCGAG+TGG | 0.685230 | 8.2:+29748871 | None:intergenic |
| TGATGAACCTCATCAACTAG+CGG | 0.689176 | 8.2:+29748054 | None:intergenic |
| ACATTGGATCTGGTTCACGC+TGG | 0.696199 | 8.2:-29746715 | MS.gene017617:CDS |
| TATTATAGGCGAATGTGACG+AGG | 0.698266 | 8.2:-29750623 | MS.gene017617:intron |
| TCGGTACGATTCCATCCAAG+GGG | 0.704865 | 8.2:+29749163 | None:intergenic |
| AATGGTGAGAACATTGACAT+CGG | 0.709922 | 8.2:-29748699 | MS.gene017617:CDS |
| TAGTTGGAGAGGATTCACTT+GGG | 0.720673 | 8.2:+29748327 | None:intergenic |
| CGGTACGATTCCATCCAAGG+GGG | 0.786068 | 8.2:+29749164 | None:intergenic |
| CATATCGCTTTAAGGCCGGG+CGG | 0.789083 | 8.2:+29750159 | None:intergenic |
| ATACACAAAGTACAACACCG+GGG | 0.864914 | 8.2:-29753801 | MS.gene017617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 29745756 | 29753912 | 29745756 | ID=MS.gene017617 |
| chr8.2 | mRNA | 29745756 | 29753912 | 29745756 | ID=MS.gene017617.t1;Parent=MS.gene017617 |
| chr8.2 | exon | 29753688 | 29753912 | 29753688 | ID=MS.gene017617.t1.exon1;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29753688 | 29753912 | 29753688 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29753493 | 29753576 | 29753493 | ID=MS.gene017617.t1.exon2;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29753493 | 29753576 | 29753493 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29753225 | 29753313 | 29753225 | ID=MS.gene017617.t1.exon3;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29753225 | 29753313 | 29753225 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29752588 | 29752762 | 29752588 | ID=MS.gene017617.t1.exon4;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29752588 | 29752762 | 29752588 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29751087 | 29751290 | 29751087 | ID=MS.gene017617.t1.exon5;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29751087 | 29751290 | 29751087 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29750919 | 29750990 | 29750919 | ID=MS.gene017617.t1.exon6;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29750919 | 29750990 | 29750919 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29750524 | 29750637 | 29750524 | ID=MS.gene017617.t1.exon7;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29750524 | 29750637 | 29750524 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29750316 | 29750416 | 29750316 | ID=MS.gene017617.t1.exon8;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29750316 | 29750416 | 29750316 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29750133 | 29750226 | 29750133 | ID=MS.gene017617.t1.exon9;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29750133 | 29750226 | 29750133 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29749854 | 29750021 | 29749854 | ID=MS.gene017617.t1.exon10;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29749854 | 29750021 | 29749854 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29749656 | 29749745 | 29749656 | ID=MS.gene017617.t1.exon11;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29749656 | 29749745 | 29749656 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29749385 | 29749450 | 29749385 | ID=MS.gene017617.t1.exon12;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29749385 | 29749450 | 29749385 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29749147 | 29749203 | 29749147 | ID=MS.gene017617.t1.exon13;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29749147 | 29749203 | 29749147 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29748848 | 29749067 | 29748848 | ID=MS.gene017617.t1.exon14;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29748848 | 29749067 | 29748848 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29748626 | 29748762 | 29748626 | ID=MS.gene017617.t1.exon15;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29748626 | 29748762 | 29748626 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29748460 | 29748528 | 29748460 | ID=MS.gene017617.t1.exon16;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29748460 | 29748528 | 29748460 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29748313 | 29748372 | 29748313 | ID=MS.gene017617.t1.exon17;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29748313 | 29748372 | 29748313 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29748029 | 29748100 | 29748029 | ID=MS.gene017617.t1.exon18;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29748029 | 29748100 | 29748029 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29747837 | 29747884 | 29747837 | ID=MS.gene017617.t1.exon19;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29747837 | 29747884 | 29747837 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29747608 | 29747727 | 29747608 | ID=MS.gene017617.t1.exon20;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29747608 | 29747727 | 29747608 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29747458 | 29747523 | 29747458 | ID=MS.gene017617.t1.exon21;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29747458 | 29747523 | 29747458 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29747065 | 29747177 | 29747065 | ID=MS.gene017617.t1.exon22;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29747065 | 29747177 | 29747065 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29746881 | 29746980 | 29746881 | ID=MS.gene017617.t1.exon23;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29746881 | 29746980 | 29746881 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29746658 | 29746768 | 29746658 | ID=MS.gene017617.t1.exon24;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29746658 | 29746768 | 29746658 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29746461 | 29746556 | 29746461 | ID=MS.gene017617.t1.exon25;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29746461 | 29746556 | 29746461 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29746343 | 29746390 | 29746343 | ID=MS.gene017617.t1.exon26;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29746343 | 29746390 | 29746343 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29746033 | 29746101 | 29746033 | ID=MS.gene017617.t1.exon27;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29746033 | 29746101 | 29746033 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| chr8.2 | exon | 29745756 | 29745944 | 29745756 | ID=MS.gene017617.t1.exon28;Parent=MS.gene017617.t1 |
| chr8.2 | CDS | 29745756 | 29745944 | 29745756 | ID=cds.MS.gene017617.t1;Parent=MS.gene017617.t1 |
| Gene Sequence |
| Protein sequence |
