AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017981

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017981.t1 MTR_7g093200 99.219 384 3 0 1 384 51 434 0.0 795
MS.gene017981.t1 MTR_1g054035 79.740 385 76 2 1 384 1 384 0.0 633
MS.gene017981.t1 MTR_1g111880 66.667 384 106 4 1 384 5 366 0.0 514
MS.gene017981.t1 MTR_5g071170 38.415 328 181 6 25 349 38 347 2.95e-66 215
MS.gene017981.t1 MTR_7g068780 38.462 325 179 7 25 346 92 398 4.27e-62 206
MS.gene017981.t1 MTR_3g464330 36.657 341 192 7 12 349 19 338 1.07e-60 201
MS.gene017981.t1 MTR_4g015630 38.769 325 178 7 25 346 86 392 2.39e-59 199
MS.gene017981.t1 MTR_7g068780 33.456 272 157 6 25 295 92 340 1.89e-35 133
MS.gene017981.t1 MTR_2g460790 26.792 265 165 8 87 344 153 395 2.22e-18 86.7
MS.gene017981.t1 MTR_4g130980 23.913 322 219 9 31 344 91 394 2.41e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017981.t1 AT3G12120 78.590 383 81 1 1 383 1 382 0.0 647
MS.gene017981.t1 AT3G12120 78.590 383 81 1 1 383 1 382 0.0 647
MS.gene017981.t1 AT2G29980 39.255 349 190 8 6 350 8 338 3.45e-66 215
MS.gene017981.t1 AT5G05580 39.039 333 184 8 16 346 74 389 1.43e-64 212
MS.gene017981.t1 AT3G11170 37.425 334 187 7 17 346 81 396 1.74e-63 209
MS.gene017981.t1 AT5G05580 37.578 322 182 8 16 335 74 378 7.41e-58 193
MS.gene017981.t1 AT2G29980 33.898 295 170 7 6 298 8 279 5.43e-40 144
MS.gene017981.t1 AT4G30950 25.141 354 218 13 10 347 76 398 3.71e-17 83.2

Find 138 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCAATAAAACCAATTT+TGG 0.087341 7.1:-14435878 MS.gene017981:CDS
GCCTGGGTTGTGTGTGTTTA+TGG 0.133830 7.1:-14436132 MS.gene017981:CDS
TCCTCGCCCTCTCTCTTTCT+TGG 0.168598 7.1:-14436649 MS.gene017981:CDS
TACTTGGCTCTCAATGTTTC+AGG 0.193124 7.1:-14436300 MS.gene017981:CDS
TCTTGGCCTGGCCTGCCTAC+TGG 0.193886 7.1:-14436632 MS.gene017981:CDS
CGATAATAATCTCCCAAAAT+TGG 0.209462 7.1:+14435865 None:intergenic
TGGGTTGTTGCTAAGGTATT+TGG 0.245996 7.1:+14436374 None:intergenic
TTGATCTGGCTGAGAGTAAA+TGG 0.252409 7.1:+14436792 None:intergenic
ACGTTCACGATCTGAGTAAA+TGG 0.257106 7.1:+14436233 None:intergenic
CTCCATAATGCCTTGTAAAA+TGG 0.258267 7.1:+14435829 None:intergenic
GGAATACTTGCAGTGTGCTT+TGG 0.282634 7.1:-14436186 MS.gene017981:CDS
CCATGGCCAAAGGTCTTGCC+TGG 0.293848 7.1:-14436149 MS.gene017981:CDS
GAAGAGCAGAGTGGAGAATA+AGG 0.302342 7.1:+14436511 None:intergenic
GAATACTTGCAGTGTGCTTT+GGG 0.308616 7.1:-14436185 MS.gene017981:CDS
CTTGGCCTGGCCTGCCTACT+GGG 0.311440 7.1:-14436631 MS.gene017981:CDS
TCTTGGCTGGCCCCTTTACT+TGG 0.313856 7.1:-14436316 MS.gene017981:CDS
GTTGCATCCTTACCGGTGTT+TGG 0.320757 7.1:-14436599 MS.gene017981:CDS
ATAGATGCTGGACTTCTGTT+TGG 0.345381 7.1:+14436404 None:intergenic
GCTTGTAGTCAATGGATTCT+TGG 0.348788 7.1:-14436100 MS.gene017981:CDS
GTGGAATGGCTTTCTTGATC+TGG 0.350001 7.1:+14436778 None:intergenic
GCCCTCTCTCTTTCTTGGCC+TGG 0.350032 7.1:-14436644 MS.gene017981:CDS
TTGCATCCTTACCGGTGTTT+GGG 0.370496 7.1:-14436598 MS.gene017981:CDS
GCAACCGTTGACAGGGATTA+CGG 0.380817 7.1:-14435994 MS.gene017981:CDS
ATCCAAGGTTGCATCCTTAC+CGG 0.381396 7.1:-14436606 MS.gene017981:CDS
TATTGTGGAAGACCTTGTTC+AGG 0.414861 7.1:+14435968 None:intergenic
TTTCTCTCGGTACCTTGATC+TGG 0.420352 7.1:+14435778 None:intergenic
TGCCTAGTGGGTTGTTGCTA+AGG 0.420443 7.1:+14436367 None:intergenic
TAGATGCTGGACTTCTGTTT+GGG 0.427586 7.1:+14436405 None:intergenic
GGACTGGTTGAGAGGAGCTT+TGG 0.429750 7.1:-14436016 MS.gene017981:CDS
GTTCCACTGCTTGTAGTCAA+TGG 0.439920 7.1:-14436108 MS.gene017981:CDS
GAGCTTTGGCAACCGTTGAC+AGG 0.441178 7.1:-14436002 MS.gene017981:CDS
CCGAGAGAAAGGGTGTATTC+TGG 0.443942 7.1:-14435765 MS.gene017981:CDS
GAATCGTAATGTGGCAATGC+CGG 0.446519 7.1:+14436048 None:intergenic
CCGAACCTCTGTTCCTCCTT+CGG 0.449015 7.1:-14436865 MS.gene017981:CDS
AACATTGAGAGCCAAGTAAA+GGG 0.450221 7.1:+14436305 None:intergenic
AGATCAAGGTACCGAGAGAA+AGG 0.451627 7.1:-14435776 MS.gene017981:CDS
CACAACCCAGGCAAGACCTT+TGG 0.453254 7.1:+14436143 None:intergenic
GATAGCCCAGTAGGCAGGCC+AGG 0.456808 7.1:+14436626 None:intergenic
CAACACTGGTTCTCTTGAGC+GGG 0.460856 7.1:-14436442 MS.gene017981:CDS
AGGAAGGTGCTGGAAGTAAT+GGG 0.461272 7.1:+14436668 None:intergenic
AAACAACATAGGAGAATGAA+TGG 0.463243 7.1:+14436730 None:intergenic
GAGGAAGGTGCTGGAAGTAA+TGG 0.464655 7.1:+14436667 None:intergenic
AGAGAGGGCGAGGAAGGTGC+TGG 0.467394 7.1:+14436658 None:intergenic
AACAGAAGTCCAGCATCTAT+TGG 0.469935 7.1:-14436401 MS.gene017981:CDS
AGAGAATGACACTGTGAAAC+GGG 0.471061 7.1:-14436832 MS.gene017981:CDS
TGTTGGAATGGTGGCGGCGA+TGG 0.476615 7.1:+14436460 None:intergenic
AGAAAGAGAGAGGGCGAGGA+AGG 0.487304 7.1:+14436652 None:intergenic
TTTGGGAGATTATTATCGGT+TGG 0.487437 7.1:-14435860 MS.gene017981:CDS
GCCAAGAAAGAGAGAGGGCG+AGG 0.487705 7.1:+14436648 None:intergenic
CTGTATTTCCATGAAAAGTA+AGG 0.488098 7.1:+14436483 None:intergenic
TGGCAAGCAAATCTATCATA+AGG 0.491259 7.1:+14436273 None:intergenic
GTAAATGGAGGCTTCTCAAA+TGG 0.492171 7.1:+14436807 None:intergenic
TGGGACCATGTGGGTTAAAG+TGG 0.493018 7.1:+14436253 None:intergenic
CAGAGAATGACACTGTGAAA+CGG 0.495501 7.1:-14436833 MS.gene017981:CDS
AGGTTGCTGAAGATGGGAGC+TGG 0.495708 7.1:-14436891 None:intergenic
CAAATATATGTATCAGATGC+AGG 0.495723 7.1:-14436207 MS.gene017981:CDS
CACCGGTAAGGATGCAACCT+TGG 0.511586 7.1:+14436604 None:intergenic
AATCGTAATGTGGCAATGCC+GGG 0.512224 7.1:+14436049 None:intergenic
CGTTCACGATCTGAGTAAAT+GGG 0.515704 7.1:+14436234 None:intergenic
ATTACCATCACCCTCACTCT+TGG 0.516387 7.1:-14436333 MS.gene017981:CDS
AAACATTGAGAGCCAAGTAA+AGG 0.522475 7.1:+14436304 None:intergenic
ACGATTCCTCTGAGTGGGAC+TGG 0.523608 7.1:-14436032 MS.gene017981:CDS
CCATCACCCTCACTCTTGGC+TGG 0.525576 7.1:-14436329 MS.gene017981:CDS
AATGGGTGGCAACGTAATAG+AGG 0.526485 7.1:+14436685 None:intergenic
CTTAAAACAGTGAGGTGGAA+TGG 0.530569 7.1:+14436764 None:intergenic
GGCCAGGCCAAGAAAGAGAG+AGG 0.530826 7.1:+14436642 None:intergenic
TGGGCTTTACCATCTTGCCA+TGG 0.531736 7.1:-14436166 MS.gene017981:CDS
TACCATCTTGCCATGGCCAA+AGG 0.532398 7.1:-14436159 MS.gene017981:CDS
ATGCATTCAGTGACTATCAA+TGG 0.532817 7.1:-14436551 MS.gene017981:CDS
CCTGCCTACTGGGCTATCCA+AGG 0.533321 7.1:-14436621 MS.gene017981:CDS
TGGCTCTCAATGTTTCAGGC+AGG 0.534597 7.1:-14436296 MS.gene017981:CDS
CCGAAGGAGGAACAGAGGTT+CGG 0.538906 7.1:+14436865 None:intergenic
CAAGAGAACCAGTGTTGGAA+TGG 0.542161 7.1:+14436448 None:intergenic
TGGTGAGGACTCTGCCTAGT+GGG 0.542219 7.1:+14436355 None:intergenic
ATCTATGTTGAGCCAGATCA+AGG 0.542641 7.1:-14435790 MS.gene017981:CDS
TATTCTGGTACAACAATAAG+TGG 0.543399 7.1:-14435750 MS.gene017981:CDS
TCTGAGTGGGACTGGTTGAG+AGG 0.543952 7.1:-14436024 MS.gene017981:CDS
CCTTGGATAGCCCAGTAGGC+AGG 0.549828 7.1:+14436621 None:intergenic
TTTGGAGTACCAATAGATGC+TGG 0.551082 7.1:+14436392 None:intergenic
CGCCGCCACCATTCCAACAC+TGG 0.559519 7.1:-14436456 MS.gene017981:CDS
TTCTCTGACTTCCTAGCCGA+AGG 0.561382 7.1:+14436849 None:intergenic
CATGGCCAAAGGTCTTGCCT+GGG 0.562153 7.1:-14436148 MS.gene017981:CDS
GACCTTTGGCCATGGCAAGA+TGG 0.564496 7.1:+14436157 None:intergenic
CAATGACCCAAACACCGGTA+AGG 0.565299 7.1:+14436592 None:intergenic
AGCTTTGGCAACCGTTGACA+GGG 0.565749 7.1:-14436001 MS.gene017981:CDS
CATGAGTGTCTGTAATATTG+TGG 0.568101 7.1:+14435953 None:intergenic
AACCAGTGTTGGAATGGTGG+CGG 0.568578 7.1:+14436454 None:intergenic
CAATGGCTTGACGATACAGT+TGG 0.569230 7.1:-14436534 MS.gene017981:CDS
GAGAACCAGTGTTGGAATGG+TGG 0.571527 7.1:+14436451 None:intergenic
GTAATAGAGGATGAAGGCTA+TGG 0.572469 7.1:+14436698 None:intergenic
ACATTACGATTCCTCTGAGT+GGG 0.573964 7.1:-14436037 MS.gene017981:CDS
AAGAGTGAGGGTGATGGTAA+TGG 0.577915 7.1:+14436335 None:intergenic
CCGCTCAAGAGAACCAGTGT+TGG 0.578244 7.1:+14436443 None:intergenic
CCTCTGTTCCTCCTTCGGCT+AGG 0.582186 7.1:-14436860 MS.gene017981:CDS
TGGGTCATTGCACATGAGTG+TGG 0.585000 7.1:-14436579 MS.gene017981:CDS
CCAGGCAAGACCTTTGGCCA+TGG 0.586238 7.1:+14436149 None:intergenic
GCCTCCATTGCATGATAATG+TGG 0.587261 7.1:+14435904 None:intergenic
CCAGAATACACCCTTTCTCT+CGG 0.587954 7.1:+14435765 None:intergenic
TCATGCAATGGAGGCTACCA+AGG 0.589000 7.1:-14435896 MS.gene017981:CDS
GCTTGCCACTTTAACCCACA+TGG 0.593012 7.1:-14436258 MS.gene017981:CDS
CCAACACTGGTTCTCTTGAG+CGG 0.593784 7.1:-14436443 MS.gene017981:CDS
GCCAGGCCAAGAAAGAGAGA+GGG 0.600094 7.1:+14436643 None:intergenic
ATGGTGAGGACTCTGCCTAG+TGG 0.601259 7.1:+14436354 None:intergenic
AAAGGGGCCAGCCAAGAGTG+AGG 0.608169 7.1:+14436322 None:intergenic
GCAACCTTGGATAGCCCAGT+AGG 0.609261 7.1:+14436617 None:intergenic
GGTGAGGTCATAAACAACAT+AGG 0.610689 7.1:+14436719 None:intergenic
TCCATAAACACACACAACCC+AGG 0.613752 7.1:+14436131 None:intergenic
CCAGCCAAGAGTGAGGGTGA+TGG 0.614753 7.1:+14436329 None:intergenic
GATCAAGGTACCGAGAGAAA+GGG 0.616655 7.1:-14435775 MS.gene017981:CDS
TCTGACTTCCTAGCCGAAGG+AGG 0.619871 7.1:+14436852 None:intergenic
CACTCAGAGGAATCGTAATG+TGG 0.622937 7.1:+14436039 None:intergenic
AATCCATTGACTACAAGCAG+TGG 0.623001 7.1:+14436105 None:intergenic
AAGGGGCCAGCCAAGAGTGA+GGG 0.628897 7.1:+14436323 None:intergenic
GGCAACGTAATAGAGGATGA+AGG 0.631803 7.1:+14436692 None:intergenic
AATGCCACATTATCATGCAA+TGG 0.633031 7.1:-14435908 MS.gene017981:CDS
GCCACATTATCATGCAATGG+AGG 0.633822 7.1:-14435905 MS.gene017981:CDS
TCTGAGTAAATGGGACCATG+TGG 0.642110 7.1:+14436243 None:intergenic
TACCTTAGCAACAACCCACT+AGG 0.642926 7.1:-14436369 MS.gene017981:CDS
TTGCTGAAGATGGGAGCTGG+TGG 0.643245 7.1:-14436888 None:intergenic
CACATTACGATTCCTCTGAG+TGG 0.649598 7.1:-14436038 MS.gene017981:CDS
ATTGATAGTCACTGAATGCA+TGG 0.657583 7.1:+14436553 None:intergenic
GAGCGCTTAAAACAGTGAGG+TGG 0.659884 7.1:+14436759 None:intergenic
CTGAGTAAATGGGACCATGT+GGG 0.661466 7.1:+14436244 None:intergenic
ACATTGAGAGCCAAGTAAAG+GGG 0.661648 7.1:+14436306 None:intergenic
ATGTGCAATGACCCAAACAC+CGG 0.662992 7.1:+14436587 None:intergenic
CAATATTACAGACACTCATG+TGG 0.663012 7.1:-14435950 MS.gene017981:CDS
TGCATGATAATGTGGCATTG+TGG 0.668075 7.1:+14435912 None:intergenic
AGAGGATGAAGGCTATGGTG+AGG 0.671685 7.1:+14436703 None:intergenic
TCTCAACCAGTCCCACTCAG+AGG 0.673811 7.1:+14436026 None:intergenic
GATTCCGTAATCCCTGTCAA+CGG 0.680193 7.1:+14435990 None:intergenic
TGAGGGTGATGGTAATGGTG+AGG 0.680817 7.1:+14436340 None:intergenic
GGATTACGGAATCCTGAACA+AGG 0.686478 7.1:-14435980 MS.gene017981:CDS
ATCTGGCTGAGAGTAAATGG+AGG 0.703701 7.1:+14436795 None:intergenic
CCTAGCCGAAGGAGGAACAG+AGG 0.707032 7.1:+14436860 None:intergenic
AAGGCACAAGAAGAGCAGAG+TGG 0.708399 7.1:+14436502 None:intergenic
AAGGTGCTGGAAGTAATGGG+TGG 0.711910 7.1:+14436671 None:intergenic
ACAGAGCGCTTAAAACAGTG+AGG 0.748360 7.1:+14436756 None:intergenic
GATAGTCACTGAATGCATGG+TGG 0.772836 7.1:+14436556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGCAATAAAACCAATTTT+GGG - chr7.1:14436749-14436768 MS.gene017981:CDS 25.0%
!!! CAATTTTGGGAGATTATTAT+CGG - chr7.1:14436762-14436781 MS.gene017981:CDS 25.0%
AAACAACATAGGAGAATGAA+TGG + chr7.1:14435899-14435918 None:intergenic 30.0%
CAAATATATGTATCAGATGC+AGG - chr7.1:14436419-14436438 MS.gene017981:CDS 30.0%
CGATAATAATCTCCCAAAAT+TGG + chr7.1:14436764-14436783 None:intergenic 30.0%
CTGTATTTCCATGAAAAGTA+AGG + chr7.1:14436146-14436165 None:intergenic 30.0%
TATTCTGGTACAACAATAAG+TGG - chr7.1:14436876-14436895 MS.gene017981:CDS 30.0%
! CAAGGCAATAAAACCAATTT+TGG - chr7.1:14436748-14436767 MS.gene017981:CDS 30.0%
!!! CAAAATTGGTTTTATTGCCT+TGG + chr7.1:14436750-14436769 None:intergenic 30.0%
AAACATTGAGAGCCAAGTAA+AGG + chr7.1:14436325-14436344 None:intergenic 35.0%
AACATTGAGAGCCAAGTAAA+GGG + chr7.1:14436324-14436343 None:intergenic 35.0%
AATGCCACATTATCATGCAA+TGG - chr7.1:14436718-14436737 MS.gene017981:CDS 35.0%
ATGCATTCAGTGACTATCAA+TGG - chr7.1:14436075-14436094 MS.gene017981:CDS 35.0%
CAATATTACAGACACTCATG+TGG - chr7.1:14436676-14436695 MS.gene017981:CDS 35.0%
CATGAGTGTCTGTAATATTG+TGG + chr7.1:14436676-14436695 None:intergenic 35.0%
CTCCATAATGCCTTGTAAAA+TGG + chr7.1:14436800-14436819 None:intergenic 35.0%
TGGCAAGCAAATCTATCATA+AGG + chr7.1:14436356-14436375 None:intergenic 35.0%
TTTGGGAGATTATTATCGGT+TGG - chr7.1:14436766-14436785 MS.gene017981:CDS 35.0%
! ATTGATAGTCACTGAATGCA+TGG + chr7.1:14436076-14436095 None:intergenic 35.0%
! GGATGAAACACCATTTTACA+AGG - chr7.1:14436787-14436806 MS.gene017981:CDS 35.0%
!! CACCATTTTACAAGGCATTA+TGG - chr7.1:14436795-14436814 MS.gene017981:CDS 35.0%
!! TTCTTGTGCCTTACTTTTCA+TGG - chr7.1:14436135-14436154 MS.gene017981:CDS 35.0%
AACAGAAGTCCAGCATCTAT+TGG - chr7.1:14436225-14436244 MS.gene017981:CDS 40.0%
ACATTACGATTCCTCTGAGT+GGG - chr7.1:14436589-14436608 MS.gene017981:CDS 40.0%
ACATTGAGAGCCAAGTAAAG+GGG + chr7.1:14436323-14436342 None:intergenic 40.0%
ACGTTCACGATCTGAGTAAA+TGG + chr7.1:14436396-14436415 None:intergenic 40.0%
AGAGAATGACACTGTGAAAC+GGG - chr7.1:14435794-14435813 MS.gene017981:CDS 40.0%
ATAGATGCTGGACTTCTGTT+TGG + chr7.1:14436225-14436244 None:intergenic 40.0%
ATCTATGTTGAGCCAGATCA+AGG - chr7.1:14436836-14436855 MS.gene017981:CDS 40.0%
CAGAGAATGACACTGTGAAA+CGG - chr7.1:14435793-14435812 MS.gene017981:CDS 40.0%
CGTTCACGATCTGAGTAAAT+GGG + chr7.1:14436395-14436414 None:intergenic 40.0%
CTTAAAACAGTGAGGTGGAA+TGG + chr7.1:14435865-14435884 None:intergenic 40.0%
GAATACTTGCAGTGTGCTTT+GGG - chr7.1:14436441-14436460 MS.gene017981:CDS 40.0%
GGTGAGGTCATAAACAACAT+AGG + chr7.1:14435910-14435929 None:intergenic 40.0%
GTAAATGGAGGCTTCTCAAA+TGG + chr7.1:14435822-14435841 None:intergenic 40.0%
GTAATAGAGGATGAAGGCTA+TGG + chr7.1:14435931-14435950 None:intergenic 40.0%
TAGATGCTGGACTTCTGTTT+GGG + chr7.1:14436224-14436243 None:intergenic 40.0%
TATTGTGGAAGACCTTGTTC+AGG + chr7.1:14436661-14436680 None:intergenic 40.0%
TTGATCTGGCTGAGAGTAAA+TGG + chr7.1:14435837-14435856 None:intergenic 40.0%
! AATCCATTGACTACAAGCAG+TGG + chr7.1:14436524-14436543 None:intergenic 40.0%
! ATTTTTGCAGCATACTCACC+CGG - chr7.1:14436559-14436578 MS.gene017981:CDS 40.0%
! GCTTGTAGTCAATGGATTCT+TGG - chr7.1:14436526-14436545 MS.gene017981:CDS 40.0%
! TACTTGGCTCTCAATGTTTC+AGG - chr7.1:14436326-14436345 MS.gene017981:CDS 40.0%
! TGCATGATAATGTGGCATTG+TGG + chr7.1:14436717-14436736 None:intergenic 40.0%
! TGGGTTGTTGCTAAGGTATT+TGG + chr7.1:14436255-14436274 None:intergenic 40.0%
! TTTGGAGTACCAATAGATGC+TGG + chr7.1:14436237-14436256 None:intergenic 40.0%
AATCGTAATGTGGCAATGCC+GGG + chr7.1:14436580-14436599 None:intergenic 45.0%
AATGGGTGGCAACGTAATAG+AGG + chr7.1:14435944-14435963 None:intergenic 45.0%
ATCCAAGGTTGCATCCTTAC+CGG - chr7.1:14436020-14436039 MS.gene017981:CDS 45.0%
ATCTGGCTGAGAGTAAATGG+AGG + chr7.1:14435834-14435853 None:intergenic 45.0%
ATGTGCAATGACCCAAACAC+CGG + chr7.1:14436042-14436061 None:intergenic 45.0%
ATTACCATCACCCTCACTCT+TGG - chr7.1:14436293-14436312 MS.gene017981:CDS 45.0%
CAATGGCTTGACGATACAGT+TGG - chr7.1:14436092-14436111 MS.gene017981:CDS 45.0%
CACATTACGATTCCTCTGAG+TGG - chr7.1:14436588-14436607 MS.gene017981:CDS 45.0%
CACTCAGAGGAATCGTAATG+TGG + chr7.1:14436590-14436609 None:intergenic 45.0%
CCAGAATACACCCTTTCTCT+CGG + chr7.1:14436864-14436883 None:intergenic 45.0%
CTGAGTAAATGGGACCATGT+GGG + chr7.1:14436385-14436404 None:intergenic 45.0%
GAAGAGCAGAGTGGAGAATA+AGG + chr7.1:14436118-14436137 None:intergenic 45.0%
GAATCGTAATGTGGCAATGC+CGG + chr7.1:14436581-14436600 None:intergenic 45.0%
GATAGTCACTGAATGCATGG+TGG + chr7.1:14436073-14436092 None:intergenic 45.0%
GATTCCGTAATCCCTGTCAA+CGG + chr7.1:14436639-14436658 None:intergenic 45.0%
GCCACATTATCATGCAATGG+AGG - chr7.1:14436721-14436740 MS.gene017981:CDS 45.0%
GGAATACTTGCAGTGTGCTT+TGG - chr7.1:14436440-14436459 MS.gene017981:CDS 45.0%
GGATTACGGAATCCTGAACA+AGG - chr7.1:14436646-14436665 MS.gene017981:CDS 45.0%
GGCAACGTAATAGAGGATGA+AGG + chr7.1:14435937-14435956 None:intergenic 45.0%
GTGGAATGGCTTTCTTGATC+TGG + chr7.1:14435851-14435870 None:intergenic 45.0%
GTTCCACTGCTTGTAGTCAA+TGG - chr7.1:14436518-14436537 MS.gene017981:CDS 45.0%
TACCTTAGCAACAACCCACT+AGG - chr7.1:14436257-14436276 MS.gene017981:CDS 45.0%
TCCATAAACACACACAACCC+AGG + chr7.1:14436498-14436517 None:intergenic 45.0%
TCTGAGTAAATGGGACCATG+TGG + chr7.1:14436386-14436405 None:intergenic 45.0%
TTGCATCCTTACCGGTGTTT+GGG - chr7.1:14436028-14436047 MS.gene017981:CDS 45.0%
TTTCTCTCGGTACCTTGATC+TGG + chr7.1:14436851-14436870 None:intergenic 45.0%
! AAGAGTGAGGGTGATGGTAA+TGG + chr7.1:14436294-14436313 None:intergenic 45.0%
! ACAGAGCGCTTAAAACAGTG+AGG + chr7.1:14435873-14435892 None:intergenic 45.0%
! CAAGAGAACCAGTGTTGGAA+TGG + chr7.1:14436181-14436200 None:intergenic 45.0%
! GCCTCCATTGCATGATAATG+TGG + chr7.1:14436725-14436744 None:intergenic 45.0%
!! AGATCAAGGTACCGAGAGAA+AGG - chr7.1:14436850-14436869 MS.gene017981:CDS 45.0%
!! AGGAAGGTGCTGGAAGTAAT+GGG + chr7.1:14435961-14435980 None:intergenic 45.0%
!! GATCAAGGTACCGAGAGAAA+GGG - chr7.1:14436851-14436870 MS.gene017981:CDS 45.0%
AAGGCACAAGAAGAGCAGAG+TGG + chr7.1:14436127-14436146 None:intergenic 50.0%
AGAGGATGAAGGCTATGGTG+AGG + chr7.1:14435926-14435945 None:intergenic 50.0%
CAATGACCCAAACACCGGTA+AGG + chr7.1:14436037-14436056 None:intergenic 50.0%
GAGCGCTTAAAACAGTGAGG+TGG + chr7.1:14435870-14435889 None:intergenic 50.0%
GCAACCGTTGACAGGGATTA+CGG - chr7.1:14436632-14436651 MS.gene017981:CDS 50.0%
GCCTGGGTTGTGTGTGTTTA+TGG - chr7.1:14436494-14436513 MS.gene017981:CDS 50.0%
GTTGCATCCTTACCGGTGTT+TGG - chr7.1:14436027-14436046 MS.gene017981:CDS 50.0%
TACCATCTTGCCATGGCCAA+AGG - chr7.1:14436467-14436486 MS.gene017981:CDS 50.0%
TCATGCAATGGAGGCTACCA+AGG - chr7.1:14436730-14436749 MS.gene017981:CDS 50.0%
TGGCTCTCAATGTTTCAGGC+AGG - chr7.1:14436330-14436349 MS.gene017981:CDS 50.0%
TGGGCTTTACCATCTTGCCA+TGG - chr7.1:14436460-14436479 MS.gene017981:CDS 50.0%
TGGGTCATTGCACATGAGTG+TGG - chr7.1:14436047-14436066 MS.gene017981:CDS 50.0%
TTCTCTGACTTCCTAGCCGA+AGG + chr7.1:14435780-14435799 None:intergenic 50.0%
! AACCAGTGTTGGAATGGTGG+CGG + chr7.1:14436175-14436194 None:intergenic 50.0%
! AGCTTTGGCAACCGTTGACA+GGG - chr7.1:14436625-14436644 MS.gene017981:CDS 50.0%
! CCGAGAGAAAGGGTGTATTC+TGG - chr7.1:14436861-14436880 MS.gene017981:CDS 50.0%
! GAGAACCAGTGTTGGAATGG+TGG + chr7.1:14436178-14436197 None:intergenic 50.0%
! TGGGACCATGTGGGTTAAAG+TGG + chr7.1:14436376-14436395 None:intergenic 50.0%
!! AAGGTGCTGGAAGTAATGGG+TGG + chr7.1:14435958-14435977 None:intergenic 50.0%
!! CAACACTGGTTCTCTTGAGC+GGG - chr7.1:14436184-14436203 MS.gene017981:CDS 50.0%
!! CCAACACTGGTTCTCTTGAG+CGG - chr7.1:14436183-14436202 MS.gene017981:CDS 50.0%
!! GAGGAAGGTGCTGGAAGTAA+TGG + chr7.1:14435962-14435981 None:intergenic 50.0%
!! GCTTGCCACTTTAACCCACA+TGG - chr7.1:14436368-14436387 MS.gene017981:CDS 50.0%
!! TGAGGGTGATGGTAATGGTG+AGG + chr7.1:14436289-14436308 None:intergenic 50.0%
!! TGCCTAGTGGGTTGTTGCTA+AGG + chr7.1:14436262-14436281 None:intergenic 50.0%
ACGATTCCTCTGAGTGGGAC+TGG - chr7.1:14436594-14436613 MS.gene017981:CDS 55.0%
AGAAAGAGAGAGGGCGAGGA+AGG + chr7.1:14435977-14435996 None:intergenic 55.0%
ATGGTGAGGACTCTGCCTAG+TGG + chr7.1:14436275-14436294 None:intergenic 55.0%
CACAACCCAGGCAAGACCTT+TGG + chr7.1:14436486-14436505 None:intergenic 55.0%
CACCGGTAAGGATGCAACCT+TGG + chr7.1:14436025-14436044 None:intergenic 55.0%
CATGGCCAAAGGTCTTGCCT+GGG - chr7.1:14436478-14436497 MS.gene017981:CDS 55.0%
CCGAACCTCTGTTCCTCCTT+CGG - chr7.1:14435761-14435780 MS.gene017981:CDS 55.0%
CCGAAGGAGGAACAGAGGTT+CGG + chr7.1:14435764-14435783 None:intergenic 55.0%
CCGCTCAAGAGAACCAGTGT+TGG + chr7.1:14436186-14436205 None:intergenic 55.0%
GACCTTTGGCCATGGCAAGA+TGG + chr7.1:14436472-14436491 None:intergenic 55.0%
GCAACCTTGGATAGCCCAGT+AGG + chr7.1:14436012-14436031 None:intergenic 55.0%
GCCAGGCCAAGAAAGAGAGA+GGG + chr7.1:14435986-14436005 None:intergenic 55.0%
TCCTCGCCCTCTCTCTTTCT+TGG - chr7.1:14435977-14435996 MS.gene017981:CDS 55.0%
TCTCAACCAGTCCCACTCAG+AGG + chr7.1:14436603-14436622 None:intergenic 55.0%
TCTGACTTCCTAGCCGAAGG+AGG + chr7.1:14435777-14435796 None:intergenic 55.0%
TGGTGAGGACTCTGCCTAGT+GGG + chr7.1:14436274-14436293 None:intergenic 55.0%
! GAGCTTTGGCAACCGTTGAC+AGG - chr7.1:14436624-14436643 MS.gene017981:CDS 55.0%
! TCTTGGCTGGCCCCTTTACT+TGG - chr7.1:14436310-14436329 MS.gene017981:CDS 55.0%
!! GGACTGGTTGAGAGGAGCTT+TGG - chr7.1:14436610-14436629 MS.gene017981:CDS 55.0%
!! TCTGAGTGGGACTGGTTGAG+AGG - chr7.1:14436602-14436621 MS.gene017981:CDS 55.0%
AAAGGGGCCAGCCAAGAGTG+AGG + chr7.1:14436307-14436326 None:intergenic 60.0%
AAGGGGCCAGCCAAGAGTGA+GGG + chr7.1:14436306-14436325 None:intergenic 60.0%
CCAGCCAAGAGTGAGGGTGA+TGG + chr7.1:14436300-14436319 None:intergenic 60.0%
CCAGGCAAGACCTTTGGCCA+TGG + chr7.1:14436480-14436499 None:intergenic 60.0%
CCATCACCCTCACTCTTGGC+TGG - chr7.1:14436297-14436316 MS.gene017981:CDS 60.0%
CCATGGCCAAAGGTCTTGCC+TGG - chr7.1:14436477-14436496 MS.gene017981:CDS 60.0%
CCTAGCCGAAGGAGGAACAG+AGG + chr7.1:14435769-14435788 None:intergenic 60.0%
CCTCTGTTCCTCCTTCGGCT+AGG - chr7.1:14435766-14435785 MS.gene017981:CDS 60.0%
CCTGCCTACTGGGCTATCCA+AGG - chr7.1:14436005-14436024 MS.gene017981:CDS 60.0%
CCTTGGATAGCCCAGTAGGC+AGG + chr7.1:14436008-14436027 None:intergenic 60.0%
GCCAAGAAAGAGAGAGGGCG+AGG + chr7.1:14435981-14436000 None:intergenic 60.0%
GCCCTCTCTCTTTCTTGGCC+TGG - chr7.1:14435982-14436001 MS.gene017981:CDS 60.0%
GGCCAGGCCAAGAAAGAGAG+AGG + chr7.1:14435987-14436006 None:intergenic 60.0%
!! TGTTGGAATGGTGGCGGCGA+TGG + chr7.1:14436169-14436188 None:intergenic 60.0%
CGCCGCCACCATTCCAACAC+TGG - chr7.1:14436170-14436189 MS.gene017981:CDS 65.0%
CTTGGCCTGGCCTGCCTACT+GGG - chr7.1:14435995-14436014 MS.gene017981:CDS 65.0%
GATAGCCCAGTAGGCAGGCC+AGG + chr7.1:14436003-14436022 None:intergenic 65.0%
TCTTGGCCTGGCCTGCCTAC+TGG - chr7.1:14435994-14436013 MS.gene017981:CDS 65.0%
! AGAGAGGGCGAGGAAGGTGC+TGG + chr7.1:14435971-14435990 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 14435747 14436901 14435747 ID=MS.gene017981
chr7.1 mRNA 14435747 14436901 14435747 ID=MS.gene017981.t1;Parent=MS.gene017981
chr7.1 exon 14435747 14436901 14435747 ID=MS.gene017981.t1.exon1;Parent=MS.gene017981.t1
chr7.1 CDS 14435747 14436901 14435747 ID=cds.MS.gene017981.t1;Parent=MS.gene017981.t1
Gene Sequence

>MS.gene017981

ATGGGAGCTGGTGGCCGAACCTCTGTTCCTCCTTCGGCTAGGAAGTCAGAGAATGACACTGTGAAACGGGTGCCATTTGAGAAGCCTCCATTTACTCTCAGCCAGATCAAGAAAGCCATTCCACCTCACTGTTTTAAGCGCTCTGTTATCCATTCATTCTCCTATGTTGTTTATGACCTCACCATAGCCTTCATCCTCTATTACGTTGCCACCCATTACTTCCAGCACCTTCCTCGCCCTCTCTCTTTCTTGGCCTGGCCTGCCTACTGGGCTATCCAAGGTTGCATCCTTACCGGTGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGACTATCAATGGCTTGACGATACAGTTGGCCTTATTCTCCACTCTGCTCTTCTTGTGCCTTACTTTTCATGGAAATACAGCCATCGCCGCCACCATTCCAACACTGGTTCTCTTGAGCGGGATGAAGTCTTTGTTCCCAAACAGAAGTCCAGCATCTATTGGTACTCCAAATACCTTAGCAACAACCCACTAGGCAGAGTCCTCACCATTACCATCACCCTCACTCTTGGCTGGCCCCTTTACTTGGCTCTCAATGTTTCAGGCAGGCCTTATGATAGATTTGCTTGCCACTTTAACCCACATGGTCCCATTTACTCAGATCGTGAACGTCTTCAAATATATGTATCAGATGCAGGAATACTTGCAGTGTGCTTTGGGCTTTACCATCTTGCCATGGCCAAAGGTCTTGCCTGGGTTGTGTGTGTTTATGGAGTTCCACTGCTTGTAGTCAATGGATTCTTGGTGTTGATTACATTTTTGCAGCATACTCACCCGGCATTGCCACATTACGATTCCTCTGAGTGGGACTGGTTGAGAGGAGCTTTGGCAACCGTTGACAGGGATTACGGAATCCTGAACAAGGTCTTCCACAATATTACAGACACTCATGTGGCACATCACTTGTTCTCCACAATGCCACATTATCATGCAATGGAGGCTACCAAGGCAATAAAACCAATTTTGGGAGATTATTATCGGTTGGATGAAACACCATTTTACAAGGCATTATGGAGAGAAGCTAGAGAGTGTATCTATGTTGAGCCAGATCAAGGTACCGAGAGAAAGGGTGTATTCTGGTACAACAATAAGTGGTGA
Protein sequence

>MS.gene017981.t1

MGAGGRTSVPPSARKSENDTVKRVPFEKPPFTLSQIKKAIPPHCFKRSVIHSFSYVVYDLTIAFILYYVATHYFQHLPRPLSFLAWPAYWAIQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSSIYWYSKYLSNNPLGRVLTITITLTLGWPLYLALNVSGRPYDRFACHFNPHGPIYSDRERLQIYVSDAGILAVCFGLYHLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGDYYRLDETPFYKALWREARECIYVEPDQGTERKGVFWYNNKW