Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018116.t1 | XP_013449757.1 | 93 | 300 | 11 | 1 | 1 | 290 | 1 | 300 | 3.50E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018116.t1 | Q54UI3 | 28.5 | 319 | 165 | 11 | 16 | 298 | 19 | 310 | 1.6e-23 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018116.t1 | A0A072UD69 | 93.0 | 300 | 11 | 1 | 1 | 290 | 1 | 300 | 2.5e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018116 | MS.gene055453 | PPI |
| MS.gene055455 | MS.gene018116 | PPI |
| MS.gene018116 | MS.gene073052 | PPI |
| MS.gene018116 | MS.gene40349 | PPI |
| MS.gene018116 | MS.gene014694 | PPI |
| MS.gene055454 | MS.gene018116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018116.t1 | MTR_7g095190 | 93.000 | 300 | 11 | 1 | 1 | 290 | 1 | 300 | 0.0 | 567 |
| MS.gene018116.t1 | MTR_7g095190 | 93.000 | 300 | 11 | 1 | 1 | 290 | 1 | 300 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018116.t1 | AT1G03110 | 59.459 | 296 | 102 | 4 | 16 | 295 | 17 | 310 | 5.10e-118 | 347 |
| MS.gene018116.t1 | AT5G50120 | 31.818 | 176 | 93 | 7 | 62 | 219 | 164 | 330 | 9.92e-11 | 62.8 |
Find 84 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCGTGAGCTCCATTTAA+AGG | 0.180877 | 7.1:-12792389 | None:intergenic |
| TTAGAATAAATTTCTGTCTT+TGG | 0.203345 | 7.1:-12794577 | None:intergenic |
| TTTCCCAAGAATCCTTTAAA+TGG | 0.219457 | 7.1:+12792377 | MS.gene018116:CDS |
| AAATCTGGTCACCGGAAAAT+TGG | 0.244032 | 7.1:+12791941 | MS.gene018116:CDS |
| CTGCAGGTTGTTTCTATTGC+AGG | 0.285044 | 7.1:+12794608 | MS.gene018116:CDS |
| AGCTCCATTTAAAGGATTCT+TGG | 0.298499 | 7.1:-12792381 | None:intergenic |
| CTGATAAATTTGGACTTGTT+TGG | 0.308911 | 7.1:+12792043 | MS.gene018116:CDS |
| TTCTTGTGAGGTTGCAGTTA+AGG | 0.349572 | 7.1:+12793940 | MS.gene018116:CDS |
| AGGGAACTGTGGATGGTTAC+AGG | 0.361133 | 7.1:+12794674 | MS.gene018116:CDS |
| CCTTTCCTTCGTTCCAGCTC+AGG | 0.366216 | 7.1:+12793734 | MS.gene018116:CDS |
| CCTCATAGTCTTCTTCTATC+TGG | 0.367040 | 7.1:+12793762 | MS.gene018116:CDS |
| CTCAAAATAAACCGATTATC+AGG | 0.367384 | 7.1:-12792235 | None:intergenic |
| TTGTAGAGGGGTTGTTTGCC+AGG | 0.373386 | 7.1:-12794652 | None:intergenic |
| GTCCGACAGCGACGGCGATA+TGG | 0.383625 | 7.1:-12791698 | None:intergenic |
| CGAATATTATCTTTATGAAA+AGG | 0.392960 | 7.1:-12791856 | None:intergenic |
| GCTCCATTTAAAGGATTCTT+GGG | 0.416782 | 7.1:-12792380 | None:intergenic |
| GCAATTCGATTCGGTGCAAA+AGG | 0.420911 | 7.1:+12791880 | MS.gene018116:CDS |
| ACGGCGATATGGTGGCCGTC+AGG | 0.422087 | 7.1:-12791687 | None:intergenic |
| CCGTCTGCAGGTACGATTGT+GGG | 0.423813 | 7.1:+12793892 | MS.gene018116:intron |
| GGAAAACTGTTTGTTTCTGC+TGG | 0.424605 | 7.1:+12791901 | MS.gene018116:CDS |
| GAGTAAGGAAGCTGCAGAAT+TGG | 0.428601 | 7.1:-12791815 | None:intergenic |
| AGAGGGGTTGTTTGCCAGGC+AGG | 0.430493 | 7.1:-12794648 | None:intergenic |
| AGGTTGAAGACGCGGAGGTC+CGG | 0.433537 | 7.1:-12791720 | None:intergenic |
| TTTATGAAAAGGTTGGTTAA+CGG | 0.436992 | 7.1:-12791845 | None:intergenic |
| CTGCAACCTCACAAGAATCT+AGG | 0.437647 | 7.1:-12793934 | None:intergenic |
| ATGCTCCTCTGCATTACCAT+TGG | 0.449802 | 7.1:-12794184 | None:intergenic |
| CTATGAGGGCTTTCCTGAGC+TGG | 0.455441 | 7.1:-12793747 | None:intergenic |
| GGGTGGACGGCGATGAGTGC+TGG | 0.467272 | 7.1:-12791666 | None:intergenic |
| TATTCTAACGCCAATGCTGC+AGG | 0.469875 | 7.1:+12794592 | MS.gene018116:CDS |
| TATTATCTTTATGAAAAGGT+TGG | 0.481584 | 7.1:-12791852 | None:intergenic |
| TCTGTCTTTGGATATGCAGT+TGG | 0.481951 | 7.1:-12794565 | None:intergenic |
| GTTAACGGATTCATCGAGTA+AGG | 0.482045 | 7.1:-12791830 | None:intergenic |
| GGTTGTTTGCCAGGCAGGTA+GGG | 0.487805 | 7.1:-12794643 | None:intergenic |
| AGCTGGAACGAAGGAAAGGC+AGG | 0.497051 | 7.1:-12793730 | None:intergenic |
| CTGCAACAAGCAAACCATCC+AGG | 0.504475 | 7.1:-12794236 | None:intergenic |
| CCAAGAGACTTGCCTCTGAA+TGG | 0.505274 | 7.1:-12794262 | None:intergenic |
| GGATGGTTTGCTTGTTGCAG+TGG | 0.505596 | 7.1:+12794239 | MS.gene018116:CDS |
| CACCATATCGCCGTCGCTGT+CGG | 0.505963 | 7.1:+12791696 | MS.gene018116:CDS |
| GAACTTTGTCCCTACCTGCC+TGG | 0.514002 | 7.1:+12794634 | MS.gene018116:CDS |
| TGGCAAACAACCCCTCTACA+AGG | 0.514056 | 7.1:+12794654 | MS.gene018116:CDS |
| TAATGAGAAAGAAGCGGTAT+CGG | 0.515373 | 7.1:-12792102 | None:intergenic |
| ATAGAAACAACCTGCAGCAT+TGG | 0.515576 | 7.1:-12794602 | None:intergenic |
| TTGTAGCATTATCACTAGCT+TGG | 0.519145 | 7.1:+12792125 | MS.gene018116:CDS |
| GCGGTTGCTATAAGCAATGA+TGG | 0.520411 | 7.1:+12792003 | MS.gene018116:CDS |
| CGATTGTGGGATATCACCTC+AGG | 0.523293 | 7.1:+12793905 | MS.gene018116:CDS |
| CTCTACAAGGGAACTGTGGA+TGG | 0.524334 | 7.1:+12794667 | MS.gene018116:CDS |
| GGGTTGTTTGCCAGGCAGGT+AGG | 0.526393 | 7.1:-12794644 | None:intergenic |
| CGGCGATATGGTGGCCGTCA+GGG | 0.527289 | 7.1:-12791686 | None:intergenic |
| AATATTCGAGCAATTCGATT+CGG | 0.527449 | 7.1:+12791871 | MS.gene018116:CDS |
| CCAGATAGAAGAAGACTATG+AGG | 0.528315 | 7.1:-12793762 | None:intergenic |
| ATTTGGACTTGTTTGGATTG+TGG | 0.532337 | 7.1:+12792050 | MS.gene018116:CDS |
| ATGGTGGCCGTCAGGGTGGA+CGG | 0.534606 | 7.1:-12791679 | None:intergenic |
| AGTCTTCTTCTATCTGGCAG+TGG | 0.535092 | 7.1:+12793768 | MS.gene018116:CDS |
| TATCGCCGTCGCTGTCGGAC+CGG | 0.537347 | 7.1:+12791701 | MS.gene018116:CDS |
| GATTTATGTACCACCCTGGA+TGG | 0.541507 | 7.1:+12794222 | MS.gene018116:CDS |
| TCCGTCTGCAGGTACGATTG+TGG | 0.548156 | 7.1:+12793891 | MS.gene018116:intron |
| TGATATCTATGTAGCTTGCA+AGG | 0.549014 | 7.1:+12794346 | MS.gene018116:intron |
| ATCCACAGTTCCCTTGTAGA+GGG | 0.553260 | 7.1:-12794665 | None:intergenic |
| GATGAGTGCTGGTGCTACTT+CGG | 0.567437 | 7.1:-12791655 | None:intergenic |
| CCTGAGCTGGAACGAAGGAA+AGG | 0.572449 | 7.1:-12793734 | None:intergenic |
| ACAAACACTTTCTGTTGCCA+AGG | 0.579132 | 7.1:+12794399 | MS.gene018116:CDS |
| GCTTTCCTGAGCTGGAACGA+AGG | 0.580842 | 7.1:-12793739 | None:intergenic |
| TGCACTCCTAGATTCTTGTG+AGG | 0.584679 | 7.1:+12793928 | MS.gene018116:CDS |
| CATCCACAGTTCCCTTGTAG+AGG | 0.587502 | 7.1:-12794666 | None:intergenic |
| TGCAACAAGCAAACCATCCA+GGG | 0.591183 | 7.1:-12794235 | None:intergenic |
| CGACAGCGACGGCGATATGG+TGG | 0.602673 | 7.1:-12791695 | None:intergenic |
| TTGTTGCAGTGGCCATTCAG+AGG | 0.604190 | 7.1:+12794250 | MS.gene018116:CDS |
| GAGGTCCGGTCCGACAGCGA+CGG | 0.604213 | 7.1:-12791706 | None:intergenic |
| TCCACAGTTCCCTTGTAGAG+GGG | 0.606091 | 7.1:-12794664 | None:intergenic |
| CAGATAGAAGAAGACTATGA+GGG | 0.608056 | 7.1:-12793761 | None:intergenic |
| CTCATCGCCGTCCACCCTGA+CGG | 0.609117 | 7.1:+12791672 | MS.gene018116:CDS |
| GAGTGCTGGTGCTACTTCGG+TGG | 0.614096 | 7.1:-12791652 | None:intergenic |
| AGAATCCAATGGTAATGCAG+AGG | 0.624288 | 7.1:+12794179 | MS.gene018116:CDS |
| CTACAATAATGAGAAAGAAG+CGG | 0.627144 | 7.1:-12792108 | None:intergenic |
| TACTGATTTATGTACCACCC+TGG | 0.627244 | 7.1:+12794218 | MS.gene018116:CDS |
| ACCCCTCTACAAGGGAACTG+TGG | 0.627699 | 7.1:+12794663 | MS.gene018116:CDS |
| TACATAAATCAGTAACAGCA+TGG | 0.628848 | 7.1:-12794209 | None:intergenic |
| AGAATCTAGGAGTGCACCTG+AGG | 0.629495 | 7.1:-12793921 | None:intergenic |
| GGCAAACAACCCCTCTACAA+GGG | 0.654276 | 7.1:+12794655 | MS.gene018116:CDS |
| CTTACAGGAGGTTGAAGACG+CGG | 0.656039 | 7.1:-12791728 | None:intergenic |
| CGATATGGTGGCCGTCAGGG+TGG | 0.669586 | 7.1:-12791683 | None:intergenic |
| GTCGGAGAAGAGAGTTACTG+CGG | 0.674879 | 7.1:+12791984 | MS.gene018116:intron |
| ACAGGAGGTTGAAGACGCGG+AGG | 0.704021 | 7.1:-12791725 | None:intergenic |
| AACAAGCAAACCATCCAGGG+TGG | 0.755349 | 7.1:-12794232 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTCATCATTATATTT+TGG | + | chr7.1:12792534-12792553 | MS.gene018116:intron | 10.0% |
| !!! | TTCTTTTTTCATTTTATTGT+TGG | + | chr7.1:12794000-12794019 | MS.gene018116:intron | 15.0% |
| !!! | TTGTTTAATTTGTTAATTTG+TGG | + | chr7.1:12792175-12792194 | MS.gene018116:intron | 15.0% |
| !! | ATAAATGAGACTAACTAAAT+TGG | - | chr7.1:12794478-12794497 | None:intergenic | 20.0% |
| !! | CGAATATTATCTTTATGAAA+AGG | - | chr7.1:12791859-12791878 | None:intergenic | 20.0% |
| !! | TATTATCTTTATGAAAAGGT+TGG | - | chr7.1:12791855-12791874 | None:intergenic | 20.0% |
| !! | TTAGAATAAATTTCTGTCTT+TGG | - | chr7.1:12794580-12794599 | None:intergenic | 20.0% |
| !!! | ACCAAGATTTTCATTTTTTT+AGG | - | chr7.1:12793281-12793300 | None:intergenic | 20.0% |
| !!! | CCAAGATTTTCATTTTTTTA+GGG | - | chr7.1:12793280-12793299 | None:intergenic | 20.0% |
| !!! | GGTATTTTATATATTTCTTG+AGG | + | chr7.1:12793961-12793980 | MS.gene018116:intron | 20.0% |
| !!! | TTTTATTGTTGGTACTTTTT+TGG | + | chr7.1:12794011-12794030 | MS.gene018116:intron | 20.0% |
| ! | AACTATGCAGAAAATAAAAC+GGG | - | chr7.1:12793843-12793862 | None:intergenic | 25.0% |
| ! | AAGTTATTTGTAGATTTGAG+CGG | + | chr7.1:12792854-12792873 | MS.gene018116:intron | 25.0% |
| ! | AATCTACAAATAACTTTCAC+TGG | - | chr7.1:12792850-12792869 | None:intergenic | 25.0% |
| ! | ACACGGAAATAAATATATGT+GGG | + | chr7.1:12792680-12792699 | MS.gene018116:intron | 25.0% |
| ! | ACATAATCAACAATTCCATT+TGG | - | chr7.1:12793333-12793352 | None:intergenic | 25.0% |
| ! | ATCTACAAATAACTTTCACT+GGG | - | chr7.1:12792849-12792868 | None:intergenic | 25.0% |
| ! | ATGATAAAACCCTAAAAATC+TGG | + | chr7.1:12791926-12791945 | MS.gene018116:CDS | 25.0% |
| ! | CCCTAAAAAAATGAAAATCT+TGG | + | chr7.1:12793277-12793296 | MS.gene018116:intron | 25.0% |
| ! | GAACTATGCAGAAAATAAAA+CGG | - | chr7.1:12793844-12793863 | None:intergenic | 25.0% |
| ! | GTTAACTTAACATTTCTATC+AGG | + | chr7.1:12792287-12792306 | MS.gene018116:intron | 25.0% |
| ! | TAAAGGAACAATATCATACA+CGG | + | chr7.1:12792663-12792682 | MS.gene018116:intron | 25.0% |
| ! | TACACGGAAATAAATATATG+TGG | + | chr7.1:12792679-12792698 | MS.gene018116:intron | 25.0% |
| ! | TGATAGGAATGAATGAAATT+GGG | - | chr7.1:12791763-12791782 | None:intergenic | 25.0% |
| ! | TTGATAGGAATGAATGAAAT+TGG | - | chr7.1:12791764-12791783 | None:intergenic | 25.0% |
| !! | CTAGACTAGTTAATTGTTAA+CGG | + | chr7.1:12794043-12794062 | MS.gene018116:intron | 25.0% |
| !! | GTTATGTCATATTTCTTTTC+AGG | + | chr7.1:12794291-12794310 | MS.gene018116:intron | 25.0% |
| !! | TCTTTTATGAAAAACATTCG+AGG | - | chr7.1:12793656-12793675 | None:intergenic | 25.0% |
| !! | TTTATGAAAAGGTTGGTTAA+CGG | - | chr7.1:12791848-12791867 | None:intergenic | 25.0% |
| !!! | ACAATTCCAGATATTTTTAG+TGG | + | chr7.1:12793586-12793605 | MS.gene018116:intron | 25.0% |
| !!! | CAATTCCAGATATTTTTAGT+GGG | + | chr7.1:12793587-12793606 | MS.gene018116:intron | 25.0% |
| !!! | CTACTTATATTTTTGCTTTG+AGG | + | chr7.1:12793521-12793540 | MS.gene018116:intron | 25.0% |
| !!! | GTCTTTTGTTTGTGTTTATA+TGG | + | chr7.1:12792337-12792356 | MS.gene018116:intron | 25.0% |
| !!! | GTTTGTTTTGCTGATAAATT+TGG | + | chr7.1:12792033-12792052 | MS.gene018116:CDS | 25.0% |
| !!! | TCTGTTTGTTAGTTTGTTTT+TGG | - | chr7.1:12793257-12793276 | None:intergenic | 25.0% |
| !!! | TTCATCATTATATTTTGGCA+TGG | + | chr7.1:12792539-12792558 | MS.gene018116:intron | 25.0% |
| !!! | TTTGTTAGTTTGTTTTTGGA+TGG | - | chr7.1:12793253-12793272 | None:intergenic | 25.0% |
| AATATTCGAGCAATTCGATT+CGG | + | chr7.1:12791871-12791890 | MS.gene018116:CDS | 30.0% | |
| ACAAACCTGCAAATAGATAT+TGG | - | chr7.1:12793708-12793727 | None:intergenic | 30.0% | |
| ACAATCCCACTAAAAATATC+TGG | - | chr7.1:12793595-12793614 | None:intergenic | 30.0% | |
| AGAATGGTGAATTGATTGAT+AGG | - | chr7.1:12791779-12791798 | None:intergenic | 30.0% | |
| CAAAACAATTATCCTAACAG+TGG | - | chr7.1:12792810-12792829 | None:intergenic | 30.0% | |
| CTACAATAATGAGAAAGAAG+CGG | - | chr7.1:12792111-12792130 | None:intergenic | 30.0% | |
| CTCAAAATAAACCGATTATC+AGG | - | chr7.1:12792238-12792257 | None:intergenic | 30.0% | |
| CTGTTTCAAATGATTATGTC+TGG | + | chr7.1:12793544-12793563 | MS.gene018116:intron | 30.0% | |
| GAATGAATGAAATTGGGAAA+GGG | - | chr7.1:12791757-12791776 | None:intergenic | 30.0% | |
| TACATAAATCAGTAACAGCA+TGG | - | chr7.1:12794212-12794231 | None:intergenic | 30.0% | |
| TGTATCCAATATCTATTTGC+AGG | + | chr7.1:12793700-12793719 | MS.gene018116:intron | 30.0% | |
| TTGTGTTTATATGGTATTGC+AGG | + | chr7.1:12792346-12792365 | MS.gene018116:intron | 30.0% | |
| TTTACCATGTACTCAAACAT+AGG | + | chr7.1:12792886-12792905 | MS.gene018116:intron | 30.0% | |
| TTTCCCAAGAATCCTTTAAA+TGG | + | chr7.1:12792377-12792396 | MS.gene018116:CDS | 30.0% | |
| TTTGCAAGTTAGTTCAACTA+GGG | - | chr7.1:12793049-12793068 | None:intergenic | 30.0% | |
| ! | CTGATAAATTTGGACTTGTT+TGG | + | chr7.1:12792043-12792062 | MS.gene018116:CDS | 30.0% |
| ! | GAAATACACTTCCAATTTTC+CGG | - | chr7.1:12791955-12791974 | None:intergenic | 30.0% |
| ! | GAGATACAAAGTTTTTGTCT+TGG | + | chr7.1:12792407-12792426 | MS.gene018116:CDS | 30.0% |
| ! | TCTTTTCATGTTTAGCCAAA+TGG | + | chr7.1:12793315-12793334 | MS.gene018116:intron | 30.0% |
| ! | TTTTGTTGAGACTCGTTATA+GGG | - | chr7.1:12792928-12792947 | None:intergenic | 30.0% |
| ! | TTTTTGTTGAGACTCGTTAT+AGG | - | chr7.1:12792929-12792948 | None:intergenic | 30.0% |
| !!! | GTTTATTTTGAGTGCTGATA+GGG | + | chr7.1:12792246-12792265 | MS.gene018116:CDS | 30.0% |
| !!! | GTTTTAACTGTGATTTTTGC+AGG | + | chr7.1:12792204-12792223 | MS.gene018116:intron | 30.0% |
| AACTGTAGATATGGTGAGAA+TGG | - | chr7.1:12791795-12791814 | None:intergenic | 35.0% | |
| AGCTCCATTTAAAGGATTCT+TGG | - | chr7.1:12792384-12792403 | None:intergenic | 35.0% | |
| AGGGGAACATGTATTTATCA+GGG | - | chr7.1:12792618-12792637 | None:intergenic | 35.0% | |
| ATTCTCCTCCTAAACAAATG+AGG | + | chr7.1:12793627-12793646 | MS.gene018116:intron | 35.0% | |
| CAGAATTGGAACTGTAGATA+TGG | - | chr7.1:12791804-12791823 | None:intergenic | 35.0% | |
| CAGATAGAAGAAGACTATGA+GGG | - | chr7.1:12793764-12793783 | None:intergenic | 35.0% | |
| CATGAAAAGAGAGTCATGTA+TGG | - | chr7.1:12793305-12793324 | None:intergenic | 35.0% | |
| GAATTAGTTAAGCCACTGTT+AGG | + | chr7.1:12792795-12792814 | MS.gene018116:intron | 35.0% | |
| GAGTCATCAAGAAAGGTTTA+AGG | - | chr7.1:12793814-12793833 | None:intergenic | 35.0% | |
| GCTCCATTTAAAGGATTCTT+GGG | - | chr7.1:12792383-12792402 | None:intergenic | 35.0% | |
| GGAATGAATGAAATTGGGAA+AGG | - | chr7.1:12791758-12791777 | None:intergenic | 35.0% | |
| GTTTAAGGAAACACTAACTG+TGG | - | chr7.1:12793799-12793818 | None:intergenic | 35.0% | |
| GTTTGCAAGTTAGTTCAACT+AGG | - | chr7.1:12793050-12793069 | None:intergenic | 35.0% | |
| TAATGAGAAAGAAGCGGTAT+CGG | - | chr7.1:12792105-12792124 | None:intergenic | 35.0% | |
| TAGGGGAACATGTATTTATC+AGG | - | chr7.1:12792619-12792638 | None:intergenic | 35.0% | |
| TCTTCATCTTCTGTTTCCAA+AGG | + | chr7.1:12794146-12794165 | MS.gene018116:intron | 35.0% | |
| TTAGCCTATGTTTGAGTACA+TGG | - | chr7.1:12792893-12792912 | None:intergenic | 35.0% | |
| TTAGGAGGAGAATGAATGTA+GGG | - | chr7.1:12793620-12793639 | None:intergenic | 35.0% | |
| TTATCAGGGATTCAGTTTCA+GGG | - | chr7.1:12792604-12792623 | None:intergenic | 35.0% | |
| TTCTCCTCCTAAACAAATGA+GGG | + | chr7.1:12793628-12793647 | MS.gene018116:intron | 35.0% | |
| TTGTAGCATTATCACTAGCT+TGG | + | chr7.1:12792125-12792144 | MS.gene018116:CDS | 35.0% | |
| TTTAGGAGGAGAATGAATGT+AGG | - | chr7.1:12793621-12793640 | None:intergenic | 35.0% | |
| TTTATCAGGGATTCAGTTTC+AGG | - | chr7.1:12792605-12792624 | None:intergenic | 35.0% | |
| ! | AGGAATTTTCGCCTGATAAT+CGG | + | chr7.1:12792224-12792243 | MS.gene018116:intron | 35.0% |
| ! | ATTTGGACTTGTTTGGATTG+TGG | + | chr7.1:12792050-12792069 | MS.gene018116:CDS | 35.0% |
| ! | GTGTATTTCTACTGTTTCGT+CGG | + | chr7.1:12791966-12791985 | MS.gene018116:intron | 35.0% |
| ! | TAAACCTTTCTTGATGACTC+AGG | + | chr7.1:12793814-12793833 | MS.gene018116:intron | 35.0% |
| ! | TCCTTTAATTTCATCCCAGT+CGG | - | chr7.1:12792650-12792669 | None:intergenic | 35.0% |
| ! | TGATATCTATGTAGCTTGCA+AGG | + | chr7.1:12794346-12794365 | MS.gene018116:intron | 35.0% |
| !! | CTTTTCAGGAGAACTTAGTA+TGG | + | chr7.1:12794305-12794324 | MS.gene018116:intron | 35.0% |
| !! | TAACTTATTTTTCCGTCTGC+AGG | + | chr7.1:12793880-12793899 | MS.gene018116:intron | 35.0% |
| !! | TCTATTCTTGTTGTTGCACT+TGG | + | chr7.1:12794107-12794126 | MS.gene018116:intron | 35.0% |
| !!! | GGTTTATTTTGAGTGCTGAT+AGG | + | chr7.1:12792245-12792264 | MS.gene018116:CDS | 35.0% |
| AAATCTGGTCACCGGAAAAT+TGG | + | chr7.1:12791941-12791960 | MS.gene018116:CDS | 40.0% | |
| AACCCTAAAAATCTGGTCAC+CGG | + | chr7.1:12791933-12791952 | MS.gene018116:CDS | 40.0% | |
| ACAAACACTTTCTGTTGCCA+AGG | + | chr7.1:12794399-12794418 | MS.gene018116:CDS | 40.0% | |
| ATAGAAACAACCTGCAGCAT+TGG | - | chr7.1:12794605-12794624 | None:intergenic | 40.0% | |
| ATATCCGATACGACACACAT+GGG | - | chr7.1:12793439-12793458 | None:intergenic | 40.0% | |
| ATATGTGGGTGTGTAGTAGT+TGG | + | chr7.1:12792694-12792713 | MS.gene018116:intron | 40.0% | |
| ATCTCGTGAGCTCCATTTAA+AGG | - | chr7.1:12792392-12792411 | None:intergenic | 40.0% | |
| ATCTTCTGTTTCCAAAGGCA+GGG | + | chr7.1:12794151-12794170 | MS.gene018116:intron | 40.0% | |
| ATTTCATCCCAGTCGGATAT+TGG | - | chr7.1:12792643-12792662 | None:intergenic | 40.0% | |
| CCAGATAGAAGAAGACTATG+AGG | - | chr7.1:12793765-12793784 | None:intergenic | 40.0% | |
| CCTCATAGTCTTCTTCTATC+TGG | + | chr7.1:12793762-12793781 | MS.gene018116:CDS | 40.0% | |
| TCCAAATACCAACTCGCAAA+GGG | - | chr7.1:12793076-12793095 | None:intergenic | 40.0% | |
| TCCGACTGGGATGAAATTAA+AGG | + | chr7.1:12792646-12792665 | MS.gene018116:intron | 40.0% | |
| TCTGTCTTTGGATATGCAGT+TGG | - | chr7.1:12794568-12794587 | None:intergenic | 40.0% | |
| TGTTGTCACAGACATTACCT+TGG | - | chr7.1:12794419-12794438 | None:intergenic | 40.0% | |
| TTCTTGTGAGGTTGCAGTTA+AGG | + | chr7.1:12793940-12793959 | MS.gene018116:CDS | 40.0% | |
| TTTCATCCCAGTCGGATATT+GGG | - | chr7.1:12792642-12792661 | None:intergenic | 40.0% | |
| ! | AGAATCCAATGGTAATGCAG+AGG | + | chr7.1:12794179-12794198 | MS.gene018116:CDS | 40.0% |
| ! | TTCCGGTGACCAGATTTTTA+GGG | - | chr7.1:12791938-12791957 | None:intergenic | 40.0% |
| ! | TTTCCGGTGACCAGATTTTT+AGG | - | chr7.1:12791939-12791958 | None:intergenic | 40.0% |
| !! | GGAAAACTGTTTGTTTCTGC+TGG | + | chr7.1:12791901-12791920 | MS.gene018116:CDS | 40.0% |
| !! | GTTAACGGATTCATCGAGTA+AGG | - | chr7.1:12791833-12791852 | None:intergenic | 40.0% |
| !! | TACTGATTTATGTACCACCC+TGG | + | chr7.1:12794218-12794237 | MS.gene018116:CDS | 40.0% |
| !! | TTTGCGAGTTGGTATTTGGA+GGG | + | chr7.1:12793076-12793095 | MS.gene018116:intron | 40.0% |
| AGTCTTCTTCTATCTGGCAG+TGG | + | chr7.1:12793768-12793787 | MS.gene018116:CDS | 45.0% | |
| ATCCACAGTTCCCTTGTAGA+GGG | - | chr7.1:12794668-12794687 | None:intergenic | 45.0% | |
| ATGCTCCTCTGCATTACCAT+TGG | - | chr7.1:12794187-12794206 | None:intergenic | 45.0% | |
| ATTGGGAAAGGGAAGCTTAC+AGG | - | chr7.1:12791746-12791765 | None:intergenic | 45.0% | |
| CATATCCGATACGACACACA+TGG | - | chr7.1:12793440-12793459 | None:intergenic | 45.0% | |
| CATCTTCTGTTTCCAAAGGC+AGG | + | chr7.1:12794150-12794169 | MS.gene018116:intron | 45.0% | |
| CGAGGTTCCCTCATTTGTTT+AGG | - | chr7.1:12793638-12793657 | None:intergenic | 45.0% | |
| CTCCAAATACCAACTCGCAA+AGG | - | chr7.1:12793077-12793096 | None:intergenic | 45.0% | |
| CTCCTAGCTTCTACACATTG+AGG | - | chr7.1:12793380-12793399 | None:intergenic | 45.0% | |
| CTGCAACCTCACAAGAATCT+AGG | - | chr7.1:12793937-12793956 | None:intergenic | 45.0% | |
| GAGTAAGGAAGCTGCAGAAT+TGG | - | chr7.1:12791818-12791837 | None:intergenic | 45.0% | |
| GATGCCTGAGTCATCAAGAA+AGG | - | chr7.1:12793821-12793840 | None:intergenic | 45.0% | |
| GATTTATGTACCACCCTGGA+TGG | + | chr7.1:12794222-12794241 | MS.gene018116:CDS | 45.0% | |
| GCGGTTGCTATAAGCAATGA+TGG | + | chr7.1:12792003-12792022 | MS.gene018116:CDS | 45.0% | |
| GCTTCTACACATTGAGGACA+CGG | - | chr7.1:12793374-12793393 | None:intergenic | 45.0% | |
| GGTTCCCTCATTTGTTTAGG+AGG | - | chr7.1:12793635-12793654 | None:intergenic | 45.0% | |
| GTCCTCAATGTGTAGAAGCT+AGG | + | chr7.1:12793375-12793394 | MS.gene018116:intron | 45.0% | |
| GTTTCCCATGTGTGTCGTAT+CGG | + | chr7.1:12793432-12793451 | MS.gene018116:intron | 45.0% | |
| TATTCTAACGCCAATGCTGC+AGG | + | chr7.1:12794592-12794611 | MS.gene018116:CDS | 45.0% | |
| TGCAACAAGCAAACCATCCA+GGG | - | chr7.1:12794238-12794257 | None:intergenic | 45.0% | |
| TGCACTCCTAGATTCTTGTG+AGG | + | chr7.1:12793928-12793947 | MS.gene018116:CDS | 45.0% | |
| TTTAGATTCTGCCACCTGAG+TGG | + | chr7.1:12793408-12793427 | MS.gene018116:intron | 45.0% | |
| ! | GATTCTAAAAGCCCTGCCTT+TGG | - | chr7.1:12794165-12794184 | None:intergenic | 45.0% |
| !! | ACCCTTTGCGAGTTGGTATT+TGG | + | chr7.1:12793072-12793091 | MS.gene018116:intron | 45.0% |
| !! | CTGCAGGTTGTTTCTATTGC+AGG | + | chr7.1:12794608-12794627 | MS.gene018116:CDS | 45.0% |
| !! | CTTTGCGAGTTGGTATTTGG+AGG | + | chr7.1:12793075-12793094 | MS.gene018116:intron | 45.0% |
| !! | GCAATTCGATTCGGTGCAAA+AGG | + | chr7.1:12791880-12791899 | MS.gene018116:CDS | 45.0% |
| !! | TTGCGAGTTGGTATTTGGAG+GGG | + | chr7.1:12793077-12793096 | MS.gene018116:intron | 45.0% |
| !!! | GCAGGGCTTTTAGAATCCAA+TGG | + | chr7.1:12794168-12794187 | MS.gene018116:CDS | 45.0% |
| AACAAGCAAACCATCCAGGG+TGG | - | chr7.1:12794235-12794254 | None:intergenic | 50.0% | |
| ACACATGGGAAACTCCACTC+AGG | - | chr7.1:12793425-12793444 | None:intergenic | 50.0% | |
| AGGGAACTGTGGATGGTTAC+AGG | + | chr7.1:12794674-12794693 | MS.gene018116:CDS | 50.0% | |
| ATCCCAGTCGGATATTGGGT+AGG | - | chr7.1:12792638-12792657 | None:intergenic | 50.0% | |
| CAAACAGACCCTTTGCGAGT+TGG | + | chr7.1:12793065-12793084 | MS.gene018116:intron | 50.0% | |
| CATCCACAGTTCCCTTGTAG+AGG | - | chr7.1:12794669-12794688 | None:intergenic | 50.0% | |
| CCAAGAGACTTGCCTCTGAA+TGG | - | chr7.1:12794265-12794284 | None:intergenic | 50.0% | |
| CCATTCAGAGGCAAGTCTCT+TGG | + | chr7.1:12794262-12794281 | MS.gene018116:intron | 50.0% | |
| CGATTGTGGGATATCACCTC+AGG | + | chr7.1:12793905-12793924 | MS.gene018116:CDS | 50.0% | |
| CTCTACAAGGGAACTGTGGA+TGG | + | chr7.1:12794667-12794686 | MS.gene018116:CDS | 50.0% | |
| CTGCAACAAGCAAACCATCC+AGG | - | chr7.1:12794239-12794258 | None:intergenic | 50.0% | |
| CTTACAGGAGGTTGAAGACG+CGG | - | chr7.1:12791731-12791750 | None:intergenic | 50.0% | |
| GAATTCGAGCGAGTTCAAGC+AGG | + | chr7.1:12794071-12794090 | MS.gene018116:intron | 50.0% | |
| GGATTCAGTTTCAGGGACGA+AGG | - | chr7.1:12792597-12792616 | None:intergenic | 50.0% | |
| GGCAAACAACCCCTCTACAA+GGG | + | chr7.1:12794655-12794674 | MS.gene018116:CDS | 50.0% | |
| GTCGGAGAAGAGAGTTACTG+CGG | + | chr7.1:12791984-12792003 | MS.gene018116:intron | 50.0% | |
| TACACATTGAGGACACGGCT+TGG | - | chr7.1:12793369-12793388 | None:intergenic | 50.0% | |
| TCAGTTTCAGGGACGAAGGA+AGG | - | chr7.1:12792593-12792612 | None:intergenic | 50.0% | |
| TCCACAGTTCCCTTGTAGAG+GGG | - | chr7.1:12794667-12794686 | None:intergenic | 50.0% | |
| TCCCAGTCGGATATTGGGTA+GGG | - | chr7.1:12792637-12792656 | None:intergenic | 50.0% | |
| TGGCAAACAACCCCTCTACA+AGG | + | chr7.1:12794654-12794673 | MS.gene018116:CDS | 50.0% | |
| TTGTAGAGGGGTTGTTTGCC+AGG | - | chr7.1:12794655-12794674 | None:intergenic | 50.0% | |
| TTGTTGCAGTGGCCATTCAG+AGG | + | chr7.1:12794250-12794269 | MS.gene018116:CDS | 50.0% | |
| ! | AGAATCTAGGAGTGCACCTG+AGG | - | chr7.1:12793924-12793943 | None:intergenic | 50.0% |
| !! | GATGAGTGCTGGTGCTACTT+CGG | - | chr7.1:12791658-12791677 | None:intergenic | 50.0% |
| !! | GGATGGTTTGCTTGTTGCAG+TGG | + | chr7.1:12794239-12794258 | MS.gene018116:CDS | 50.0% |
| !! | TGCGAGTTGGTATTTGGAGG+GGG | + | chr7.1:12793078-12793097 | MS.gene018116:intron | 50.0% |
| ACCCCTCTACAAGGGAACTG+TGG | + | chr7.1:12794663-12794682 | MS.gene018116:CDS | 55.0% | |
| AGCTGGAACGAAGGAAAGGC+AGG | - | chr7.1:12793733-12793752 | None:intergenic | 55.0% | |
| CATGGCAACAGAGCGAATCG+GGG | + | chr7.1:12792557-12792576 | MS.gene018116:intron | 55.0% | |
| CATGGGAAACTCCACTCAGG+TGG | - | chr7.1:12793422-12793441 | None:intergenic | 55.0% | |
| CCCACAATCGTACCTGCAGA+CGG | - | chr7.1:12793895-12793914 | None:intergenic | 55.0% | |
| CCCAGTCGGATATTGGGTAG+GGG | - | chr7.1:12792636-12792655 | None:intergenic | 55.0% | |
| CCCCTACCCAATATCCGACT+GGG | + | chr7.1:12792633-12792652 | MS.gene018116:intron | 55.0% | |
| CCGTCTGCAGGTACGATTGT+GGG | + | chr7.1:12793892-12793911 | MS.gene018116:intron | 55.0% | |
| CCTGAGCTGGAACGAAGGAA+AGG | - | chr7.1:12793737-12793756 | None:intergenic | 55.0% | |
| CCTTTCCTTCGTTCCAGCTC+AGG | + | chr7.1:12793734-12793753 | MS.gene018116:CDS | 55.0% | |
| CTATGAGGGCTTTCCTGAGC+TGG | - | chr7.1:12793750-12793769 | None:intergenic | 55.0% | |
| GAACTTTGTCCCTACCTGCC+TGG | + | chr7.1:12794634-12794653 | MS.gene018116:CDS | 55.0% | |
| GCATGGCAACAGAGCGAATC+GGG | + | chr7.1:12792556-12792575 | MS.gene018116:intron | 55.0% | |
| GCTTTCCTGAGCTGGAACGA+AGG | - | chr7.1:12793742-12793761 | None:intergenic | 55.0% | |
| GGCATGGCAACAGAGCGAAT+CGG | + | chr7.1:12792555-12792574 | MS.gene018116:intron | 55.0% | |
| GGGAAAGGGAAGCTTACAGG+AGG | - | chr7.1:12791743-12791762 | None:intergenic | 55.0% | |
| GGTTGTTTGCCAGGCAGGTA+GGG | - | chr7.1:12794646-12794665 | None:intergenic | 55.0% | |
| GTATTTGGAGGGGGGGACAT+TGG | + | chr7.1:12793087-12793106 | MS.gene018116:intron | 55.0% | |
| TCCCCTACCCAATATCCGAC+TGG | + | chr7.1:12792632-12792651 | MS.gene018116:intron | 55.0% | |
| TCCGTCTGCAGGTACGATTG+TGG | + | chr7.1:12793891-12793910 | MS.gene018116:intron | 55.0% | |
| !! | CGAGTTGGTATTTGGAGGGG+GGG | + | chr7.1:12793080-12793099 | MS.gene018116:intron | 55.0% |
| !! | GCGAGTTGGTATTTGGAGGG+GGG | + | chr7.1:12793079-12793098 | MS.gene018116:intron | 55.0% |
| ACAGGAGGTTGAAGACGCGG+AGG | - | chr7.1:12791728-12791747 | None:intergenic | 60.0% | |
| AGAGGGGTTGTTTGCCAGGC+AGG | - | chr7.1:12794651-12794670 | None:intergenic | 60.0% | |
| AGGTTGAAGACGCGGAGGTC+CGG | - | chr7.1:12791723-12791742 | None:intergenic | 60.0% | |
| CAACAGAGCGAATCGGGGAC+AGG | + | chr7.1:12792562-12792581 | MS.gene018116:intron | 60.0% | |
| CACCATATCGCCGTCGCTGT+CGG | + | chr7.1:12791696-12791715 | MS.gene018116:CDS | 60.0% | |
| GGGTTGTTTGCCAGGCAGGT+AGG | - | chr7.1:12794647-12794666 | None:intergenic | 60.0% | |
| TTGGAGGGGGGGACATTGGA+GGG | + | chr7.1:12793091-12793110 | MS.gene018116:intron | 60.0% | |
| TTTGGAGGGGGGGACATTGG+AGG | + | chr7.1:12793090-12793109 | MS.gene018116:intron | 60.0% | |
| !! | GAGTGCTGGTGCTACTTCGG+TGG | - | chr7.1:12791655-12791674 | None:intergenic | 60.0% |
| ACGGCGATATGGTGGCCGTC+AGG | - | chr7.1:12791690-12791709 | None:intergenic | 65.0% | |
| ATGGTGGCCGTCAGGGTGGA+CGG | - | chr7.1:12791682-12791701 | None:intergenic | 65.0% | |
| CGACAGCGACGGCGATATGG+TGG | - | chr7.1:12791698-12791717 | None:intergenic | 65.0% | |
| CGATATGGTGGCCGTCAGGG+TGG | - | chr7.1:12791686-12791705 | None:intergenic | 65.0% | |
| CGGCGATATGGTGGCCGTCA+GGG | - | chr7.1:12791689-12791708 | None:intergenic | 65.0% | |
| CTCATCGCCGTCCACCCTGA+CGG | + | chr7.1:12791672-12791691 | MS.gene018116:CDS | 65.0% | |
| GTCCGACAGCGACGGCGATA+TGG | - | chr7.1:12791701-12791720 | None:intergenic | 65.0% | |
| TATCGCCGTCGCTGTCGGAC+CGG | + | chr7.1:12791701-12791720 | MS.gene018116:CDS | 65.0% | |
| GAGGTCCGGTCCGACAGCGA+CGG | - | chr7.1:12791709-12791728 | None:intergenic | 70.0% | |
| GGGTGGACGGCGATGAGTGC+TGG | - | chr7.1:12791669-12791688 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 12791612 | 12794705 | 12791612 | ID=MS.gene018116 |
| chr7.1 | mRNA | 12791612 | 12794705 | 12791612 | ID=MS.gene018116.t1;Parent=MS.gene018116 |
| chr7.1 | exon | 12791612 | 12791745 | 12791612 | ID=MS.gene018116.t1.exon1;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12791612 | 12791745 | 12791612 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12791813 | 12791965 | 12791813 | ID=MS.gene018116.t1.exon2;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12791813 | 12791965 | 12791813 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12791996 | 12792146 | 12791996 | ID=MS.gene018116.t1.exon3;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12791996 | 12792146 | 12791996 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12792226 | 12792282 | 12792226 | ID=MS.gene018116.t1.exon4;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12792226 | 12792282 | 12792226 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12792368 | 12792438 | 12792368 | ID=MS.gene018116.t1.exon5;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12792368 | 12792438 | 12792368 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12793722 | 12793800 | 12793722 | ID=MS.gene018116.t1.exon6;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12793722 | 12793800 | 12793722 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12793902 | 12793961 | 12793902 | ID=MS.gene018116.t1.exon7;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12793902 | 12793961 | 12793902 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12794168 | 12794271 | 12794168 | ID=MS.gene018116.t1.exon8;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12794168 | 12794271 | 12794168 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12794360 | 12794420 | 12794360 | ID=MS.gene018116.t1.exon9;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12794360 | 12794420 | 12794360 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| chr7.1 | exon | 12794565 | 12794705 | 12794565 | ID=MS.gene018116.t1.exon10;Parent=MS.gene018116.t1 |
| chr7.1 | CDS | 12794565 | 12794705 | 12794565 | ID=cds.MS.gene018116.t1;Parent=MS.gene018116.t1 |
| Gene Sequence |
| Protein sequence |
