Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018612.t1 | XP_003625418.1 | 96.3 | 490 | 17 | 1 | 1 | 489 | 1 | 490 | 1.70E-259 | 904.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018612.t1 | Q9SVT8 | 79.2 | 481 | 95 | 2 | 2 | 477 | 3 | 483 | 4.8e-210 | 731.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018612.t1 | G7KYH5 | 96.3 | 490 | 17 | 1 | 1 | 489 | 1 | 490 | 1.2e-259 | 904.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018612 | MS.gene058774 | PPI |
| MS.gene018612 | MS.gene005052 | PPI |
| MS.gene018612 | MS.gene74897 | PPI |
| MS.gene018612 | MS.gene07605 | PPI |
| MS.gene018612 | MS.gene058775 | PPI |
| MS.gene018612 | MS.gene005054 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018612.t1 | MTR_7g098930 | 96.122 | 490 | 18 | 1 | 1 | 489 | 1 | 490 | 0.0 | 934 |
| MS.gene018612.t1 | MTR_7g113340 | 90.593 | 489 | 46 | 0 | 1 | 489 | 1 | 489 | 0.0 | 889 |
| MS.gene018612.t1 | MTR_1g045550 | 73.673 | 490 | 127 | 2 | 1 | 489 | 1 | 489 | 0.0 | 747 |
| MS.gene018612.t1 | MTR_1g079760 | 74.029 | 489 | 121 | 3 | 1 | 485 | 1 | 487 | 0.0 | 715 |
| MS.gene018612.t1 | MTR_3g463730 | 67.117 | 444 | 141 | 4 | 41 | 482 | 8 | 448 | 0.0 | 588 |
| MS.gene018612.t1 | MTR_7g115050 | 28.101 | 395 | 231 | 14 | 103 | 477 | 86 | 447 | 7.78e-22 | 98.6 |
| MS.gene018612.t1 | MTR_8g074750 | 26.889 | 450 | 269 | 15 | 47 | 472 | 30 | 443 | 3.11e-19 | 90.9 |
| MS.gene018612.t1 | MTR_1g036410 | 25.499 | 451 | 277 | 12 | 47 | 472 | 24 | 440 | 3.17e-18 | 87.4 |
| MS.gene018612.t1 | MTR_7g069640 | 26.146 | 371 | 229 | 11 | 123 | 485 | 129 | 462 | 3.83e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018612.t1 | AT4G28700 | 79.002 | 481 | 96 | 2 | 2 | 477 | 3 | 483 | 0.0 | 747 |
| MS.gene018612.t1 | AT4G13510 | 73.251 | 486 | 126 | 3 | 5 | 489 | 2 | 484 | 0.0 | 744 |
| MS.gene018612.t1 | AT3G24290 | 74.843 | 477 | 117 | 2 | 3 | 479 | 4 | 477 | 0.0 | 734 |
| MS.gene018612.t1 | AT3G24300 | 73.640 | 478 | 122 | 3 | 3 | 479 | 4 | 478 | 0.0 | 725 |
| MS.gene018612.t1 | AT1G64780 | 74.675 | 462 | 111 | 4 | 27 | 484 | 32 | 491 | 0.0 | 714 |
| MS.gene018612.t1 | AT2G38290 | 26.134 | 463 | 290 | 12 | 47 | 488 | 20 | 451 | 6.03e-16 | 80.5 |
| MS.gene018612.t1 | AT2G38290 | 28.142 | 366 | 214 | 12 | 135 | 488 | 7 | 335 | 1.42e-13 | 72.4 |
Find 106 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATTTGGTTCAAATTT+TGG | 0.092893 | 7.3:+13326747 | MS.gene018612:CDS |
| TATTTCAGTTGCACGTTTCT+TGG | 0.217407 | 7.3:-13326929 | None:intergenic |
| CAATATGTTAAAGAAGTTTA+TGG | 0.222489 | 7.3:+13326667 | MS.gene018612:CDS |
| CAATAGTTGCGCATTGGTTT+TGG | 0.263486 | 7.3:+13326002 | MS.gene018612:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.267595 | 7.3:+13326385 | MS.gene018612:CDS |
| CATTTAGTTGGCGCAGTTGC+TGG | 0.280435 | 7.3:+13326112 | MS.gene018612:CDS |
| TTCGGGTTTGCCTTTGCTTT+CGG | 0.288803 | 7.3:+13325779 | MS.gene018612:CDS |
| TAGTGGTACTTTAGTTGTTA+TGG | 0.289328 | 7.3:+13326213 | MS.gene018612:CDS |
| TGATCAAATCTACCAATTCT+TGG | 0.296521 | 7.3:-13326160 | None:intergenic |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.3:+13326723 | MS.gene018612:CDS |
| CGTTTCTTGGAACGTCCTTC+AGG | 0.301303 | 7.3:-13326916 | None:intergenic |
| TGTTTGGGTGAGTGTTACTA+TGG | 0.317455 | 7.3:+13326777 | MS.gene018612:CDS |
| GATGTTTGTAATGGTTTGTT+AGG | 0.319352 | 7.3:+13326442 | MS.gene018612:CDS |
| CTTGAAGCTGCTCAACTTCA+TGG | 0.324413 | 7.3:+13326595 | MS.gene018612:CDS |
| AAGATTATTGGCTGCACATT+TGG | 0.325570 | 7.3:+13326735 | MS.gene018612:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.3:+13326325 | MS.gene018612:CDS |
| CAAAACCAATGCGCAACTAT+TGG | 0.341333 | 7.3:-13326001 | None:intergenic |
| AGGCCTTATGGTTTGTTGTT+GGG | 0.343846 | 7.3:+13326703 | MS.gene018612:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.344179 | 7.3:+13326100 | MS.gene018612:CDS |
| GGTTCACCAGATAGGCCTTA+TGG | 0.344593 | 7.3:+13326691 | MS.gene018612:CDS |
| GCTTTCGGCACACCTTCTAA+TGG | 0.348115 | 7.3:+13325794 | MS.gene018612:CDS |
| AACAAACCATAAGGCCTATC+TGG | 0.363039 | 7.3:-13326697 | None:intergenic |
| AGTGGTACTTTAGTTGTTAT+GGG | 0.366370 | 7.3:+13326214 | MS.gene018612:CDS |
| CAGCTCTCACTACTTTGTTT+GGG | 0.373878 | 7.3:+13326386 | MS.gene018612:CDS |
| AACGTTTGCAAACAGGTCAT+TGG | 0.375052 | 7.3:+13326410 | MS.gene018612:CDS |
| GAAGCCGTTGCAGATGTATT+CGG | 0.389455 | 7.3:-13325558 | None:intergenic |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.3:+13326244 | MS.gene018612:CDS |
| ATTGGTTAACATAATATTCA+TGG | 0.394480 | 7.3:-13325717 | None:intergenic |
| TGAAGAAGAGATGGCTGGAT+TGG | 0.397610 | 7.3:+13326849 | MS.gene018612:CDS |
| TAGGCCTTATGGTTTGTTGT+TGG | 0.399686 | 7.3:+13326702 | MS.gene018612:CDS |
| GTTGTTCTGTTGTTGATCCA+TGG | 0.400973 | 7.3:+13326488 | MS.gene018612:CDS |
| TTCATGGTGGTTGTGGCACA+TGG | 0.403730 | 7.3:+13326611 | MS.gene018612:CDS |
| TTTGGGAAACGTTTGCAAAC+AGG | 0.404967 | 7.3:+13326403 | MS.gene018612:CDS |
| ACACCTTCTAATGGTTTCAT+TGG | 0.405120 | 7.3:+13325803 | MS.gene018612:CDS |
| GGTTTGTTGTTGGGAGGTGG+TGG | 0.412513 | 7.3:+13326712 | MS.gene018612:CDS |
| TTTCCAATGAAACCATTAGA+AGG | 0.426927 | 7.3:-13325806 | None:intergenic |
| GATGTATTCGGCAGCGGCTG+TGG | 0.428663 | 7.3:-13325546 | None:intergenic |
| TATGGTTTGTTGTTGGGAGG+TGG | 0.435507 | 7.3:+13326709 | MS.gene018612:CDS |
| TTTATGGTGGTTCACCAGAT+AGG | 0.437334 | 7.3:+13326683 | MS.gene018612:CDS |
| CCATGGGCTGCAATTATTTG+CGG | 0.442763 | 7.3:+13326505 | MS.gene018612:CDS |
| TTGATTGAAGGACCAAGAAT+TGG | 0.443702 | 7.3:+13326148 | MS.gene018612:CDS |
| GCTCAACTTCATGGTGGTTG+TGG | 0.443914 | 7.3:+13326604 | MS.gene018612:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.3:+13326307 | MS.gene018612:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.3:+13326326 | MS.gene018612:CDS |
| AACTATTGGATAAACTAAAC+CGG | 0.447985 | 7.3:-13325987 | None:intergenic |
| TAGATTTGATCATGAAGGTA+AGG | 0.457000 | 7.3:+13326171 | MS.gene018612:CDS |
| TGCTGATGGTTGGGGTAGTC+CGG | 0.458442 | 7.3:+13326027 | MS.gene018612:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.462409 | 7.3:+13326818 | MS.gene018612:CDS |
| TTGTTCTGTTGTTGATCCAT+GGG | 0.462585 | 7.3:+13326489 | MS.gene018612:CDS |
| CATGGTGGTTGTGGCACATG+GGG | 0.465415 | 7.3:+13326613 | MS.gene018612:CDS |
| GTGGAGGTCGGAGGCGGAGC+AGG | 0.470016 | 7.3:-13325498 | None:intergenic |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.3:+13326873 | MS.gene018612:CDS |
| GCTGTGACAACTACATTGGC+TGG | 0.480039 | 7.3:+13326355 | MS.gene018612:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.3:+13326314 | MS.gene018612:CDS |
| AATGTTACTGATGTTTGTAA+TGG | 0.492106 | 7.3:+13326433 | MS.gene018612:CDS |
| GAGAGCGTGGAGGTCGGAGG+CGG | 0.493293 | 7.3:-13325504 | None:intergenic |
| TTGCGGATTTGTTGCTGCGT+GGG | 0.498589 | 7.3:+13326522 | MS.gene018612:CDS |
| GTCAATGAATTTGTTTGCAA+TGG | 0.501078 | 7.3:-13325585 | None:intergenic |
| AATGTTCTTGATGCCGCCAC+TGG | 0.502684 | 7.3:+13325737 | MS.gene018612:CDS |
| GTTTGTAATGGTTTGTTAGG+TGG | 0.503528 | 7.3:+13326445 | MS.gene018612:CDS |
| ATGGTTGGGGTAGTCCGGCT+CGG | 0.503769 | 7.3:+13326032 | MS.gene018612:CDS |
| ATTGGTAGATTTGATCATGA+AGG | 0.517699 | 7.3:+13326166 | MS.gene018612:CDS |
| TGGAGTTTGCACCGCTGCCG+AGG | 0.519424 | 7.3:-13325526 | None:intergenic |
| CCTCCCAACAACAAACCATA+AGG | 0.520192 | 7.3:-13326706 | None:intergenic |
| TCCGACCTCCACGCTCTCCT+CGG | 0.524571 | 7.3:+13325509 | MS.gene018612:CDS |
| TCATGGTGGTTGTGGCACAT+GGG | 0.525963 | 7.3:+13326612 | MS.gene018612:CDS |
| CCTTATGGTTTGTTGTTGGG+AGG | 0.526212 | 7.3:+13326706 | MS.gene018612:CDS |
| GTTCTTGATGCCGCCACTGG+CGG | 0.529079 | 7.3:+13325740 | MS.gene018612:CDS |
| CTCCACGCTCTCCTCGGCAG+CGG | 0.535645 | 7.3:+13325515 | MS.gene018612:CDS |
| AACGTGCAACTGAAATATGA+AGG | 0.545110 | 7.3:+13326935 | MS.gene018612:CDS |
| CACCGCTGCCGAGGAGAGCG+TGG | 0.546466 | 7.3:-13325517 | None:intergenic |
| TTTATCCAATAGTTGCGCAT+TGG | 0.550357 | 7.3:+13325996 | MS.gene018612:CDS |
| CAAGGTAAGCGGAAAAGAGA+AGG | 0.554067 | 7.3:-13325634 | None:intergenic |
| TCACATGAAGAAGAGATGGC+TGG | 0.556577 | 7.3:+13326844 | MS.gene018612:CDS |
| AACGGAACCAGCGCAAAGCA+TGG | 0.565138 | 7.3:-13325681 | None:intergenic |
| CATGGCAAAACCGAGTTGCA+TGG | 0.567366 | 7.3:-13325663 | None:intergenic |
| CCGCAAATAATTGCAGCCCA+TGG | 0.567823 | 7.3:-13326505 | None:intergenic |
| GGATTGGATTTAACTAGCCA+TGG | 0.567834 | 7.3:+13326865 | MS.gene018612:CDS |
| GAGTTCACATGAAGAAGAGA+TGG | 0.574355 | 7.3:+13326840 | MS.gene018612:CDS |
| GTTGCAGATGTATTCGGCAG+CGG | 0.576245 | 7.3:-13325552 | None:intergenic |
| GTTTGGGTGAGTGTTACTAT+GGG | 0.584751 | 7.3:+13326778 | MS.gene018612:CDS |
| GCCGAGGAGAGCGTGGAGGT+CGG | 0.587689 | 7.3:-13325510 | None:intergenic |
| GAGGAGAGCGTGGAGGTCGG+AGG | 0.594655 | 7.3:-13325507 | None:intergenic |
| AGATTTGATCATGAAGGTAA+GGG | 0.600041 | 7.3:+13326172 | MS.gene018612:CDS |
| TATGTTAAAGAAGTTTATGG+TGG | 0.601613 | 7.3:+13326670 | MS.gene018612:CDS |
| AAGATGTTAAGAAAAGAACC+AGG | 0.604124 | 7.3:-13326274 | None:intergenic |
| GTAGGTGTTGTCAACAGCGT+AGG | 0.604804 | 7.3:-13325612 | None:intergenic |
| GACAGCTGTGACAACTACAT+TGG | 0.614425 | 7.3:+13326351 | MS.gene018612:CDS |
| TGAAGTTGAGCAGCTTCAAG+AGG | 0.615625 | 7.3:-13326592 | None:intergenic |
| AGAAGGTGTGCCGAAAGCAA+AGG | 0.615821 | 7.3:-13325789 | None:intergenic |
| TTTGCGGATTTGTTGCTGCG+TGG | 0.617501 | 7.3:+13326521 | MS.gene018612:CDS |
| GGTAAGGGTGTTTCAATGAG+AGG | 0.619487 | 7.3:+13326187 | MS.gene018612:CDS |
| GCTGCAGCAGGAATCACTAG+TGG | 0.625263 | 7.3:+13325908 | MS.gene018612:CDS |
| CCATAATCAAAAGACTGAGA+AGG | 0.626299 | 7.3:-13325854 | None:intergenic |
| TTGGATTTAACTAGCCATGG+TGG | 0.626409 | 7.3:+13326868 | MS.gene018612:CDS |
| GTTTCAATGAGAGGACATAG+TGG | 0.631638 | 7.3:+13326196 | MS.gene018612:CDS |
| CAGTATCATGAAGAGCCTGA+AGG | 0.631950 | 7.3:+13326901 | MS.gene018612:CDS |
| GTAAGCGGAAAAGAGAAGGT+AGG | 0.633933 | 7.3:-13325630 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.3:+13326329 | MS.gene018612:CDS |
| AGTGGCGGCATCAAGAACAT+TGG | 0.640439 | 7.3:-13325735 | None:intergenic |
| ATGGTGGTTGTGGCACATGG+GGG | 0.642261 | 7.3:+13326614 | MS.gene018612:CDS |
| AGATGTTAAGAAAAGAACCA+GGG | 0.643491 | 7.3:-13326273 | None:intergenic |
| GAAGCTGCTCAACTTCATGG+TGG | 0.677955 | 7.3:+13326598 | MS.gene018612:CDS |
| ACTGATAAGCCAATCCACCA+TGG | 0.685945 | 7.3:-13326882 | None:intergenic |
| CGCTGCCGAGGAGAGCGTGG+AGG | 0.689136 | 7.3:-13325514 | None:intergenic |
| GCTGCCGAATACATCTGCAA+CGG | 0.700251 | 7.3:+13325554 | MS.gene018612:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGAAGAATAAAAAACA+AGG | - | chr7.3:13326806-13326825 | None:intergenic | 15.0% |
| !!! | ATTTATTCATCTTTTTTAAC+CGG | + | chr7.3:13325968-13325987 | MS.gene018612:CDS | 15.0% |
| !! | ATTGGTTAACATAATATTCA+TGG | - | chr7.3:13325720-13325739 | None:intergenic | 20.0% |
| !! | CAATATGTTAAAGAAGTTTA+TGG | + | chr7.3:13326667-13326686 | MS.gene018612:CDS | 20.0% |
| !! | CTTAACATCTTAAAAACTTA+TGG | + | chr7.3:13326286-13326305 | MS.gene018612:CDS | 20.0% |
| !!! | GCATTTTTTTCTATATTTTC+GGG | + | chr7.3:13325762-13325781 | MS.gene018612:CDS | 20.0% |
| !!! | GGCATTTTTTTCTATATTTT+CGG | + | chr7.3:13325761-13325780 | MS.gene018612:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.3:13326818-13326837 | MS.gene018612:CDS | 20.0% |
| ! | AACTATTGGATAAACTAAAC+CGG | - | chr7.3:13325990-13326009 | None:intergenic | 25.0% |
| ! | AATGTTACTGATGTTTGTAA+TGG | + | chr7.3:13326433-13326452 | MS.gene018612:CDS | 25.0% |
| ! | TATGTTAAAGAAGTTTATGG+TGG | + | chr7.3:13326670-13326689 | MS.gene018612:CDS | 25.0% |
| ! | TTAAAAACTTATGGTGAAAG+TGG | + | chr7.3:13326295-13326314 | MS.gene018612:CDS | 25.0% |
| !! | CATAATATTCATGGTGTTTT+TGG | - | chr7.3:13325711-13325730 | None:intergenic | 25.0% |
| !! | TTATGGGAACATTTTTACTT+TGG | + | chr7.3:13326230-13326249 | MS.gene018612:CDS | 25.0% |
| !!! | AAATTTTGGCTATTGTTGTT+TGG | + | chr7.3:13326761-13326780 | MS.gene018612:CDS | 25.0% |
| !!! | AATTTTGGCTATTGTTGTTT+GGG | + | chr7.3:13326762-13326781 | MS.gene018612:CDS | 25.0% |
| !!! | TTCATTGGAAAACACTTTTT+CGG | + | chr7.3:13325818-13325837 | MS.gene018612:CDS | 25.0% |
| AAGATGTTAAGAAAAGAACC+AGG | - | chr7.3:13326277-13326296 | None:intergenic | 30.0% | |
| AGATGTTAAGAAAAGAACCA+GGG | - | chr7.3:13326276-13326295 | None:intergenic | 30.0% | |
| AGATTTGATCATGAAGGTAA+GGG | + | chr7.3:13326172-13326191 | MS.gene018612:CDS | 30.0% | |
| AGTGGTACTTTAGTTGTTAT+GGG | + | chr7.3:13326214-13326233 | MS.gene018612:CDS | 30.0% | |
| ATTGGTAGATTTGATCATGA+AGG | + | chr7.3:13326166-13326185 | MS.gene018612:CDS | 30.0% | |
| TAGATTTGATCATGAAGGTA+AGG | + | chr7.3:13326171-13326190 | MS.gene018612:CDS | 30.0% | |
| TAGTGGTACTTTAGTTGTTA+TGG | + | chr7.3:13326213-13326232 | MS.gene018612:CDS | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.3:13326163-13326182 | None:intergenic | 30.0% | |
| TTTCCAATGAAACCATTAGA+AGG | - | chr7.3:13325809-13325828 | None:intergenic | 30.0% | |
| ! | ATGGATATTTTCTGTATCAG+TGG | + | chr7.3:13325873-13325892 | MS.gene018612:CDS | 30.0% |
| ! | GGAACATTTTTACTTTGGTT+TGG | + | chr7.3:13326235-13326254 | MS.gene018612:CDS | 30.0% |
| ! | GTCAATGAATTTGTTTGCAA+TGG | - | chr7.3:13325588-13325607 | None:intergenic | 30.0% |
| ! | TGGATATTTTCTGTATCAGT+GGG | + | chr7.3:13325874-13325893 | MS.gene018612:CDS | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr7.3:13326058-13326077 | MS.gene018612:CDS | 30.0% |
| !! | GATGTTTGTAATGGTTTGTT+AGG | + | chr7.3:13326442-13326461 | MS.gene018612:CDS | 30.0% |
| !! | TGCACATTTGGTTCAAATTT+TGG | + | chr7.3:13326747-13326766 | MS.gene018612:CDS | 30.0% |
| !!! | CATTTTTACTTTGGTTTGGT+TGG | + | chr7.3:13326239-13326258 | MS.gene018612:CDS | 30.0% |
| ACACCTTCTAATGGTTTCAT+TGG | + | chr7.3:13325803-13325822 | MS.gene018612:CDS | 35.0% | |
| CCATAATCAAAAGACTGAGA+AGG | - | chr7.3:13325857-13325876 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.3:13326307-13326326 | MS.gene018612:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.3:13326314-13326333 | MS.gene018612:CDS | 35.0% | |
| TATTTCAGTTGCACGTTTCT+TGG | - | chr7.3:13326932-13326951 | None:intergenic | 35.0% | |
| TTGATTGAAGGACCAAGAAT+TGG | + | chr7.3:13326148-13326167 | MS.gene018612:CDS | 35.0% | |
| TTGTTCTGTTGTTGATCCAT+GGG | + | chr7.3:13326489-13326508 | MS.gene018612:CDS | 35.0% | |
| TTTATCCAATAGTTGCGCAT+TGG | + | chr7.3:13325996-13326015 | MS.gene018612:CDS | 35.0% | |
| ! | AAGATTATTGGCTGCACATT+TGG | + | chr7.3:13326735-13326754 | MS.gene018612:CDS | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr7.3:13326052-13326071 | MS.gene018612:CDS | 35.0% |
| !! | CCTTCTCAGTCTTTTGATTA+TGG | + | chr7.3:13325854-13325873 | MS.gene018612:CDS | 35.0% |
| !! | GTTTGTAATGGTTTGTTAGG+TGG | + | chr7.3:13326445-13326464 | MS.gene018612:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.3:13326100-13326119 | MS.gene018612:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.3:13326244-13326263 | MS.gene018612:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.3:13326076-13326095 | MS.gene018612:CDS | 35.0% |
| AACAAACCATAAGGCCTATC+TGG | - | chr7.3:13326700-13326719 | None:intergenic | 40.0% | |
| AACGTTTGCAAACAGGTCAT+TGG | + | chr7.3:13326410-13326429 | MS.gene018612:CDS | 40.0% | |
| ATAGAAAAAAATGCCGCCAG+TGG | - | chr7.3:13325756-13325775 | None:intergenic | 40.0% | |
| CAAAACCAATGCGCAACTAT+TGG | - | chr7.3:13326004-13326023 | None:intergenic | 40.0% | |
| CATGGCAAAAACAAGGTAAG+CGG | - | chr7.3:13325648-13325667 | None:intergenic | 40.0% | |
| GAGTTCACATGAAGAAGAGA+TGG | + | chr7.3:13326840-13326859 | MS.gene018612:CDS | 40.0% | |
| GGATTGGATTTAACTAGCCA+TGG | + | chr7.3:13326865-13326884 | MS.gene018612:CDS | 40.0% | |
| GTTGTTCTGTTGTTGATCCA+TGG | + | chr7.3:13326488-13326507 | MS.gene018612:CDS | 40.0% | |
| GTTTCAATGAGAGGACATAG+TGG | + | chr7.3:13326196-13326215 | MS.gene018612:CDS | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.3:13326868-13326887 | MS.gene018612:CDS | 40.0% | |
| TTTATGGTGGTTCACCAGAT+AGG | + | chr7.3:13326683-13326702 | MS.gene018612:CDS | 40.0% | |
| TTTGGGAAACGTTTGCAAAC+AGG | + | chr7.3:13326403-13326422 | MS.gene018612:CDS | 40.0% | |
| ! | AAAAGATTTTCAGACCGAGC+CGG | - | chr7.3:13326049-13326068 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.3:13326326-13326345 | MS.gene018612:CDS | 40.0% |
| ! | CAGCTCTCACTACTTTGTTT+GGG | + | chr7.3:13326386-13326405 | MS.gene018612:CDS | 40.0% |
| ! | GTTTGGGTGAGTGTTACTAT+GGG | + | chr7.3:13326778-13326797 | MS.gene018612:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.3:13326325-13326344 | MS.gene018612:CDS | 40.0% |
| ! | TGTTTGGGTGAGTGTTACTA+TGG | + | chr7.3:13326777-13326796 | MS.gene018612:CDS | 40.0% |
| !! | AGGCCTTATGGTTTGTTGTT+GGG | + | chr7.3:13326703-13326722 | MS.gene018612:CDS | 40.0% |
| !! | TAGGCCTTATGGTTTGTTGT+TGG | + | chr7.3:13326702-13326721 | MS.gene018612:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.3:13326873-13326892 | MS.gene018612:CDS | 40.0% |
| !!! | CAATAGTTGCGCATTGGTTT+TGG | + | chr7.3:13326002-13326021 | MS.gene018612:CDS | 40.0% |
| !!! | CTTGTTTTTGCCATGCAACT+CGG | + | chr7.3:13325653-13325672 | MS.gene018612:CDS | 40.0% |
| !!! | GTTATTGATTTTGCTGGCTG+TGG | + | chr7.3:13326082-13326101 | MS.gene018612:CDS | 40.0% |
| !!! | TTTTGGGGTGCTTTGATTGA+AGG | + | chr7.3:13326136-13326155 | MS.gene018612:CDS | 40.0% |
| ACTGATAAGCCAATCCACCA+TGG | - | chr7.3:13326885-13326904 | None:intergenic | 45.0% | |
| CAAGGTAAGCGGAAAAGAGA+AGG | - | chr7.3:13325637-13325656 | None:intergenic | 45.0% | |
| CAGTATCATGAAGAGCCTGA+AGG | + | chr7.3:13326901-13326920 | MS.gene018612:CDS | 45.0% | |
| CCTCCCAACAACAAACCATA+AGG | - | chr7.3:13326709-13326728 | None:intergenic | 45.0% | |
| CGAGTTGCATGGCAAAAACA+AGG | - | chr7.3:13325655-13325674 | None:intergenic | 45.0% | |
| CTTGAAGCTGCTCAACTTCA+TGG | + | chr7.3:13326595-13326614 | MS.gene018612:CDS | 45.0% | |
| GAAGCCGTTGCAGATGTATT+CGG | - | chr7.3:13325561-13325580 | None:intergenic | 45.0% | |
| GACAGCTGTGACAACTACAT+TGG | + | chr7.3:13326351-13326370 | MS.gene018612:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.3:13326385-13326404 | MS.gene018612:CDS | 45.0% | |
| GTAAGCGGAAAAGAGAAGGT+AGG | - | chr7.3:13325633-13325652 | None:intergenic | 45.0% | |
| TCACATGAAGAAGAGATGGC+TGG | + | chr7.3:13326844-13326863 | MS.gene018612:CDS | 45.0% | |
| TGAAGAAGAGATGGCTGGAT+TGG | + | chr7.3:13326849-13326868 | MS.gene018612:CDS | 45.0% | |
| TGAAGTTGAGCAGCTTCAAG+AGG | - | chr7.3:13326595-13326614 | None:intergenic | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+CGG | + | chr7.3:13326505-13326524 | MS.gene018612:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.3:13326466-13326485 | MS.gene018612:CDS | 45.0% |
| ! | TTCGGGTTTGCCTTTGCTTT+CGG | + | chr7.3:13325779-13325798 | MS.gene018612:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.3:13326019-13326038 | MS.gene018612:CDS | 45.0% |
| !! | CCTTATGGTTTGTTGTTGGG+AGG | + | chr7.3:13326706-13326725 | MS.gene018612:CDS | 45.0% |
| !! | GGTAAGGGTGTTTCAATGAG+AGG | + | chr7.3:13326187-13326206 | MS.gene018612:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.3:13326018-13326037 | MS.gene018612:CDS | 45.0% |
| !! | TATGGTTTGTTGTTGGGAGG+TGG | + | chr7.3:13326709-13326728 | MS.gene018612:CDS | 45.0% |
| !!! | CATGGTGTTTTTGGCACGAA+CGG | - | chr7.3:13325702-13325721 | None:intergenic | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.3:13326013-13326032 | MS.gene018612:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.3:13326256-13326275 | MS.gene018612:CDS | 45.0% |
| AATGTTCTTGATGCCGCCAC+TGG | + | chr7.3:13325737-13325756 | MS.gene018612:CDS | 50.0% | |
| AGTGGCGGCATCAAGAACAT+TGG | - | chr7.3:13325738-13325757 | None:intergenic | 50.0% | |
| CATGGCAAAACCGAGTTGCA+TGG | - | chr7.3:13325666-13325685 | None:intergenic | 50.0% | |
| CATTTAGTTGGCGCAGTTGC+TGG | + | chr7.3:13326112-13326131 | MS.gene018612:CDS | 50.0% | |
| CCGCAAATAATTGCAGCCCA+TGG | - | chr7.3:13326508-13326527 | None:intergenic | 50.0% | |
| CGTTTCTTGGAACGTCCTTC+AGG | - | chr7.3:13326919-13326938 | None:intergenic | 50.0% | |
| GAAAAAAATGCCGCCAGTGG+CGG | - | chr7.3:13325753-13325772 | None:intergenic | 50.0% | |
| GAAGCTGCTCAACTTCATGG+TGG | + | chr7.3:13326598-13326617 | MS.gene018612:CDS | 50.0% | |
| GCTCAACTTCATGGTGGTTG+TGG | + | chr7.3:13326604-13326623 | MS.gene018612:CDS | 50.0% | |
| GCTGCCGAATACATCTGCAA+CGG | + | chr7.3:13325554-13325573 | MS.gene018612:CDS | 50.0% | |
| GCTGTGACAACTACATTGGC+TGG | + | chr7.3:13326355-13326374 | MS.gene018612:CDS | 50.0% | |
| GCTTTCGGCACACCTTCTAA+TGG | + | chr7.3:13325794-13325813 | MS.gene018612:CDS | 50.0% | |
| GGTTCACCAGATAGGCCTTA+TGG | + | chr7.3:13326691-13326710 | MS.gene018612:CDS | 50.0% | |
| GTTGCAGATGTATTCGGCAG+CGG | - | chr7.3:13325555-13325574 | None:intergenic | 50.0% | |
| TCATGGTGGTTGTGGCACAT+GGG | + | chr7.3:13326612-13326631 | MS.gene018612:CDS | 50.0% | |
| TTCATGGTGGTTGTGGCACA+TGG | + | chr7.3:13326611-13326630 | MS.gene018612:CDS | 50.0% | |
| ! | AGAAGGTGTGCCGAAAGCAA+AGG | - | chr7.3:13325792-13325811 | None:intergenic | 50.0% |
| ! | GCTTTTGCAATTGCTGCAGC+AGG | + | chr7.3:13325896-13325915 | MS.gene018612:CDS | 50.0% |
| ! | GTAGGTGTTGTCAACAGCGT+AGG | - | chr7.3:13325615-13325634 | None:intergenic | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.3:13326329-13326348 | MS.gene018612:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.3:13326723-13326742 | MS.gene018612:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.3:13326017-13326036 | MS.gene018612:CDS | 50.0% |
| !! | GTTGCTGCGTGGGTTTTGAT+TGG | + | chr7.3:13326532-13326551 | MS.gene018612:CDS | 50.0% |
| !! | TTGCGGATTTGTTGCTGCGT+GGG | + | chr7.3:13326522-13326541 | MS.gene018612:CDS | 50.0% |
| !! | TTTGCGGATTTGTTGCTGCG+TGG | + | chr7.3:13326521-13326540 | MS.gene018612:CDS | 50.0% |
| !!! | TGGCGCAGTTGCTGGTTTTT+GGG | + | chr7.3:13326120-13326139 | MS.gene018612:CDS | 50.0% |
| !!! | TTGGCGCAGTTGCTGGTTTT+TGG | + | chr7.3:13326119-13326138 | MS.gene018612:CDS | 50.0% |
| AACGGAACCAGCGCAAAGCA+TGG | - | chr7.3:13325684-13325703 | None:intergenic | 55.0% | |
| ATGGTGGTTGTGGCACATGG+GGG | + | chr7.3:13326614-13326633 | MS.gene018612:CDS | 55.0% | |
| CATGGTGGTTGTGGCACATG+GGG | + | chr7.3:13326613-13326632 | MS.gene018612:CDS | 55.0% | |
| GCTGCAGCAGGAATCACTAG+TGG | + | chr7.3:13325908-13325927 | MS.gene018612:CDS | 55.0% | |
| TGCTGATGGTTGGGGTAGTC+CGG | + | chr7.3:13326027-13326046 | MS.gene018612:CDS | 55.0% | |
| ! | GGTTTTGCCATGCTTTGCGC+TGG | + | chr7.3:13325674-13325693 | MS.gene018612:CDS | 55.0% |
| !! | GGTTTGTTGTTGGGAGGTGG+TGG | + | chr7.3:13326712-13326731 | MS.gene018612:CDS | 55.0% |
| !!! | GGCGCAGTTGCTGGTTTTTG+GGG | + | chr7.3:13326121-13326140 | MS.gene018612:CDS | 55.0% |
| ATGGTTGGGGTAGTCCGGCT+CGG | + | chr7.3:13326032-13326051 | MS.gene018612:CDS | 60.0% | |
| GATGTATTCGGCAGCGGCTG+TGG | - | chr7.3:13325549-13325568 | None:intergenic | 60.0% | |
| GTTCTTGATGCCGCCACTGG+CGG | + | chr7.3:13325740-13325759 | MS.gene018612:CDS | 60.0% | |
| TCCGACCTCCACGCTCTCCT+CGG | + | chr7.3:13325509-13325528 | MS.gene018612:CDS | 65.0% | |
| TGGAGTTTGCACCGCTGCCG+AGG | - | chr7.3:13325529-13325548 | None:intergenic | 65.0% | |
| CTCCACGCTCTCCTCGGCAG+CGG | + | chr7.3:13325515-13325534 | MS.gene018612:CDS | 70.0% | |
| ! | GAGAGCGTGGAGGTCGGAGG+CGG | - | chr7.3:13325507-13325526 | None:intergenic | 70.0% |
| ! | GAGGAGAGCGTGGAGGTCGG+AGG | - | chr7.3:13325510-13325529 | None:intergenic | 70.0% |
| ! | GCCGAGGAGAGCGTGGAGGT+CGG | - | chr7.3:13325513-13325532 | None:intergenic | 70.0% |
| CACCGCTGCCGAGGAGAGCG+TGG | - | chr7.3:13325520-13325539 | None:intergenic | 75.0% | |
| GTGGAGGTCGGAGGCGGAGC+AGG | - | chr7.3:13325501-13325520 | None:intergenic | 75.0% | |
| ! | CGCTGCCGAGGAGAGCGTGG+AGG | - | chr7.3:13325517-13325536 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 13325485 | 13326954 | 13325485 | ID=MS.gene018612 |
| chr7.3 | mRNA | 13325485 | 13326954 | 13325485 | ID=MS.gene018612.t1;Parent=MS.gene018612 |
| chr7.3 | exon | 13325485 | 13326954 | 13325485 | ID=MS.gene018612.t1.exon1;Parent=MS.gene018612.t1 |
| chr7.3 | CDS | 13325485 | 13326954 | 13325485 | ID=cds.MS.gene018612.t1;Parent=MS.gene018612.t1 |
| Gene Sequence |
| Protein sequence |
