Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018613.t1 | XP_003625418.1 | 96.3 | 490 | 17 | 1 | 1 | 489 | 1 | 490 | 1.70E-259 | 904.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018613.t1 | Q9SVT8 | 79.2 | 481 | 95 | 2 | 2 | 477 | 3 | 483 | 4.8e-210 | 731.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018613.t1 | G7KYH5 | 96.3 | 490 | 17 | 1 | 1 | 489 | 1 | 490 | 1.2e-259 | 904.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018613 | MS.gene058775 | PPI |
| MS.gene005054 | MS.gene018613 | PPI |
| MS.gene018613 | MS.gene058774 | PPI |
| MS.gene018613 | MS.gene005052 | PPI |
| MS.gene07605 | MS.gene018613 | PPI |
| MS.gene018613 | MS.gene74897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018613.t1 | MTR_7g098930 | 96.122 | 490 | 18 | 1 | 1 | 489 | 1 | 490 | 0.0 | 934 |
| MS.gene018613.t1 | MTR_7g113340 | 90.593 | 489 | 46 | 0 | 1 | 489 | 1 | 489 | 0.0 | 889 |
| MS.gene018613.t1 | MTR_1g045550 | 73.673 | 490 | 127 | 2 | 1 | 489 | 1 | 489 | 0.0 | 747 |
| MS.gene018613.t1 | MTR_1g079760 | 74.029 | 489 | 121 | 3 | 1 | 485 | 1 | 487 | 0.0 | 715 |
| MS.gene018613.t1 | MTR_3g463730 | 67.117 | 444 | 141 | 4 | 41 | 482 | 8 | 448 | 0.0 | 588 |
| MS.gene018613.t1 | MTR_7g115050 | 28.101 | 395 | 231 | 14 | 103 | 477 | 86 | 447 | 7.78e-22 | 98.6 |
| MS.gene018613.t1 | MTR_8g074750 | 26.889 | 450 | 269 | 15 | 47 | 472 | 30 | 443 | 3.11e-19 | 90.9 |
| MS.gene018613.t1 | MTR_1g036410 | 25.499 | 451 | 277 | 12 | 47 | 472 | 24 | 440 | 3.17e-18 | 87.4 |
| MS.gene018613.t1 | MTR_7g069640 | 26.146 | 371 | 229 | 11 | 123 | 485 | 129 | 462 | 3.83e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018613.t1 | AT4G28700 | 79.002 | 481 | 96 | 2 | 2 | 477 | 3 | 483 | 0.0 | 747 |
| MS.gene018613.t1 | AT4G13510 | 73.251 | 486 | 126 | 3 | 5 | 489 | 2 | 484 | 0.0 | 744 |
| MS.gene018613.t1 | AT3G24290 | 74.843 | 477 | 117 | 2 | 3 | 479 | 4 | 477 | 0.0 | 734 |
| MS.gene018613.t1 | AT3G24300 | 73.640 | 478 | 122 | 3 | 3 | 479 | 4 | 478 | 0.0 | 725 |
| MS.gene018613.t1 | AT1G64780 | 74.675 | 462 | 111 | 4 | 27 | 484 | 32 | 491 | 0.0 | 714 |
| MS.gene018613.t1 | AT2G38290 | 26.134 | 463 | 290 | 12 | 47 | 488 | 20 | 451 | 6.03e-16 | 80.5 |
| MS.gene018613.t1 | AT2G38290 | 28.142 | 366 | 214 | 12 | 135 | 488 | 7 | 335 | 1.42e-13 | 72.4 |
Find 106 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATTTGGTTCAAATTT+TGG | 0.092893 | 7.3:+13358771 | MS.gene018613:CDS |
| TATTTCAGTTGCACGTTTCT+TGG | 0.217407 | 7.3:-13358953 | None:intergenic |
| CAATATGTTAAAGAAGTTTA+TGG | 0.222489 | 7.3:+13358691 | MS.gene018613:CDS |
| CAATAGTTGCGCATTGGTTT+TGG | 0.263486 | 7.3:+13358026 | MS.gene018613:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.267595 | 7.3:+13358409 | MS.gene018613:CDS |
| CATTTAGTTGGCGCAGTTGC+TGG | 0.280435 | 7.3:+13358136 | MS.gene018613:CDS |
| TTCGGGTTTGCCTTTGCTTT+CGG | 0.288803 | 7.3:+13357803 | MS.gene018613:CDS |
| TAGTGGTACTTTAGTTGTTA+TGG | 0.289328 | 7.3:+13358237 | MS.gene018613:CDS |
| TGATCAAATCTACCAATTCT+TGG | 0.296521 | 7.3:-13358184 | None:intergenic |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.3:+13358747 | MS.gene018613:CDS |
| CGTTTCTTGGAACGTCCTTC+AGG | 0.301303 | 7.3:-13358940 | None:intergenic |
| TGTTTGGGTGAGTGTTACTA+TGG | 0.317455 | 7.3:+13358801 | MS.gene018613:CDS |
| GATGTTTGTAATGGTTTGTT+AGG | 0.319352 | 7.3:+13358466 | MS.gene018613:CDS |
| CTTGAAGCTGCTCAACTTCA+TGG | 0.324413 | 7.3:+13358619 | MS.gene018613:CDS |
| AAGATTATTGGCTGCACATT+TGG | 0.325570 | 7.3:+13358759 | MS.gene018613:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.3:+13358349 | MS.gene018613:CDS |
| CAAAACCAATGCGCAACTAT+TGG | 0.341333 | 7.3:-13358025 | None:intergenic |
| AGGCCTTATGGTTTGTTGTT+GGG | 0.343846 | 7.3:+13358727 | MS.gene018613:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.344179 | 7.3:+13358124 | MS.gene018613:CDS |
| GGTTCACCAGATAGGCCTTA+TGG | 0.344593 | 7.3:+13358715 | MS.gene018613:CDS |
| GCTTTCGGCACACCTTCTAA+TGG | 0.348115 | 7.3:+13357818 | MS.gene018613:CDS |
| AACAAACCATAAGGCCTATC+TGG | 0.363039 | 7.3:-13358721 | None:intergenic |
| AGTGGTACTTTAGTTGTTAT+GGG | 0.366370 | 7.3:+13358238 | MS.gene018613:CDS |
| CAGCTCTCACTACTTTGTTT+GGG | 0.373878 | 7.3:+13358410 | MS.gene018613:CDS |
| AACGTTTGCAAACAGGTCAT+TGG | 0.375052 | 7.3:+13358434 | MS.gene018613:CDS |
| GAAGCCGTTGCAGATGTATT+CGG | 0.389455 | 7.3:-13357582 | None:intergenic |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.3:+13358268 | MS.gene018613:CDS |
| ATTGGTTAACATAATATTCA+TGG | 0.394480 | 7.3:-13357741 | None:intergenic |
| TGAAGAAGAGATGGCTGGAT+TGG | 0.397610 | 7.3:+13358873 | MS.gene018613:CDS |
| TAGGCCTTATGGTTTGTTGT+TGG | 0.399686 | 7.3:+13358726 | MS.gene018613:CDS |
| GTTGTTCTGTTGTTGATCCA+TGG | 0.400973 | 7.3:+13358512 | MS.gene018613:CDS |
| TTCATGGTGGTTGTGGCACA+TGG | 0.403730 | 7.3:+13358635 | MS.gene018613:CDS |
| TTTGGGAAACGTTTGCAAAC+AGG | 0.404967 | 7.3:+13358427 | MS.gene018613:CDS |
| ACACCTTCTAATGGTTTCAT+TGG | 0.405120 | 7.3:+13357827 | MS.gene018613:CDS |
| GGTTTGTTGTTGGGAGGTGG+TGG | 0.412513 | 7.3:+13358736 | MS.gene018613:CDS |
| TTTCCAATGAAACCATTAGA+AGG | 0.426927 | 7.3:-13357830 | None:intergenic |
| GATGTATTCGGCAGCGGCTG+TGG | 0.428663 | 7.3:-13357570 | None:intergenic |
| TATGGTTTGTTGTTGGGAGG+TGG | 0.435507 | 7.3:+13358733 | MS.gene018613:CDS |
| TTTATGGTGGTTCACCAGAT+AGG | 0.437334 | 7.3:+13358707 | MS.gene018613:CDS |
| CCATGGGCTGCAATTATTTG+CGG | 0.442763 | 7.3:+13358529 | MS.gene018613:CDS |
| TTGATTGAAGGACCAAGAAT+TGG | 0.443702 | 7.3:+13358172 | MS.gene018613:CDS |
| GCTCAACTTCATGGTGGTTG+TGG | 0.443914 | 7.3:+13358628 | MS.gene018613:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.3:+13358331 | MS.gene018613:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.3:+13358350 | MS.gene018613:CDS |
| AACTATTGGATAAACTAAAC+CGG | 0.447985 | 7.3:-13358011 | None:intergenic |
| TAGATTTGATCATGAAGGTA+AGG | 0.457000 | 7.3:+13358195 | MS.gene018613:CDS |
| TGCTGATGGTTGGGGTAGTC+CGG | 0.458442 | 7.3:+13358051 | MS.gene018613:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.462409 | 7.3:+13358842 | MS.gene018613:CDS |
| TTGTTCTGTTGTTGATCCAT+GGG | 0.462585 | 7.3:+13358513 | MS.gene018613:CDS |
| CATGGTGGTTGTGGCACATG+GGG | 0.465415 | 7.3:+13358637 | MS.gene018613:CDS |
| GTGGAGGTCGGAGGCGGAGC+AGG | 0.470016 | 7.3:-13357522 | None:intergenic |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.3:+13358897 | MS.gene018613:CDS |
| GCTGTGACAACTACATTGGC+TGG | 0.480039 | 7.3:+13358379 | MS.gene018613:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.3:+13358338 | MS.gene018613:CDS |
| AATGTTACTGATGTTTGTAA+TGG | 0.492106 | 7.3:+13358457 | MS.gene018613:CDS |
| GAGAGCGTGGAGGTCGGAGG+CGG | 0.493293 | 7.3:-13357528 | None:intergenic |
| TTGCGGATTTGTTGCTGCGT+GGG | 0.498589 | 7.3:+13358546 | MS.gene018613:CDS |
| GTCAATGAATTTGTTTGCAA+TGG | 0.501078 | 7.3:-13357609 | None:intergenic |
| AATGTTCTTGATGCCGCCAC+TGG | 0.502684 | 7.3:+13357761 | MS.gene018613:CDS |
| GTTTGTAATGGTTTGTTAGG+TGG | 0.503528 | 7.3:+13358469 | MS.gene018613:CDS |
| ATGGTTGGGGTAGTCCGGCT+CGG | 0.503769 | 7.3:+13358056 | MS.gene018613:CDS |
| ATTGGTAGATTTGATCATGA+AGG | 0.517699 | 7.3:+13358190 | MS.gene018613:CDS |
| TGGAGTTTGCACCGCTGCCG+AGG | 0.519424 | 7.3:-13357550 | None:intergenic |
| CCTCCCAACAACAAACCATA+AGG | 0.520192 | 7.3:-13358730 | None:intergenic |
| TCCGACCTCCACGCTCTCCT+CGG | 0.524571 | 7.3:+13357533 | MS.gene018613:CDS |
| TCATGGTGGTTGTGGCACAT+GGG | 0.525963 | 7.3:+13358636 | MS.gene018613:CDS |
| CCTTATGGTTTGTTGTTGGG+AGG | 0.526212 | 7.3:+13358730 | MS.gene018613:CDS |
| GTTCTTGATGCCGCCACTGG+CGG | 0.529079 | 7.3:+13357764 | MS.gene018613:CDS |
| CTCCACGCTCTCCTCGGCAG+CGG | 0.535645 | 7.3:+13357539 | MS.gene018613:CDS |
| AACGTGCAACTGAAATATGA+AGG | 0.545110 | 7.3:+13358959 | MS.gene018613:CDS |
| CACCGCTGCCGAGGAGAGCG+TGG | 0.546466 | 7.3:-13357541 | None:intergenic |
| TTTATCCAATAGTTGCGCAT+TGG | 0.550357 | 7.3:+13358020 | MS.gene018613:CDS |
| CAAGGTAAGCGGAAAAGAGA+AGG | 0.554067 | 7.3:-13357658 | None:intergenic |
| TCACATGAAGAAGAGATGGC+TGG | 0.556577 | 7.3:+13358868 | MS.gene018613:CDS |
| AACGGAACCAGCGCAAAGCA+TGG | 0.565138 | 7.3:-13357705 | None:intergenic |
| CATGGCAAAACCGAGTTGCA+TGG | 0.567366 | 7.3:-13357687 | None:intergenic |
| CCGCAAATAATTGCAGCCCA+TGG | 0.567823 | 7.3:-13358529 | None:intergenic |
| GGATTGGATTTAACTAGCCA+TGG | 0.567834 | 7.3:+13358889 | MS.gene018613:CDS |
| GAGTTCACATGAAGAAGAGA+TGG | 0.574355 | 7.3:+13358864 | MS.gene018613:CDS |
| GTTGCAGATGTATTCGGCAG+CGG | 0.576245 | 7.3:-13357576 | None:intergenic |
| GTTTGGGTGAGTGTTACTAT+GGG | 0.584751 | 7.3:+13358802 | MS.gene018613:CDS |
| GCCGAGGAGAGCGTGGAGGT+CGG | 0.587689 | 7.3:-13357534 | None:intergenic |
| GAGGAGAGCGTGGAGGTCGG+AGG | 0.594655 | 7.3:-13357531 | None:intergenic |
| AGATTTGATCATGAAGGTAA+GGG | 0.600041 | 7.3:+13358196 | MS.gene018613:CDS |
| TATGTTAAAGAAGTTTATGG+TGG | 0.601613 | 7.3:+13358694 | MS.gene018613:CDS |
| AAGATGTTAAGAAAAGAACC+AGG | 0.604124 | 7.3:-13358298 | None:intergenic |
| GTAGGTGTTGTCAACAGCGT+AGG | 0.604804 | 7.3:-13357636 | None:intergenic |
| GACAGCTGTGACAACTACAT+TGG | 0.614425 | 7.3:+13358375 | MS.gene018613:CDS |
| TGAAGTTGAGCAGCTTCAAG+AGG | 0.615625 | 7.3:-13358616 | None:intergenic |
| AGAAGGTGTGCCGAAAGCAA+AGG | 0.615821 | 7.3:-13357813 | None:intergenic |
| TTTGCGGATTTGTTGCTGCG+TGG | 0.617501 | 7.3:+13358545 | MS.gene018613:CDS |
| GGTAAGGGTGTTTCAATGAG+AGG | 0.619487 | 7.3:+13358211 | MS.gene018613:CDS |
| GCTGCAGCAGGAATCACTAG+TGG | 0.625263 | 7.3:+13357932 | MS.gene018613:CDS |
| CCATAATCAAAAGACTGAGA+AGG | 0.626299 | 7.3:-13357878 | None:intergenic |
| TTGGATTTAACTAGCCATGG+TGG | 0.626409 | 7.3:+13358892 | MS.gene018613:CDS |
| GTTTCAATGAGAGGACATAG+TGG | 0.631638 | 7.3:+13358220 | MS.gene018613:CDS |
| CAGTATCATGAAGAGCCTGA+AGG | 0.631950 | 7.3:+13358925 | MS.gene018613:CDS |
| GTAAGCGGAAAAGAGAAGGT+AGG | 0.633933 | 7.3:-13357654 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.3:+13358353 | MS.gene018613:CDS |
| AGTGGCGGCATCAAGAACAT+TGG | 0.640439 | 7.3:-13357759 | None:intergenic |
| ATGGTGGTTGTGGCACATGG+GGG | 0.642261 | 7.3:+13358638 | MS.gene018613:CDS |
| AGATGTTAAGAAAAGAACCA+GGG | 0.643491 | 7.3:-13358297 | None:intergenic |
| GAAGCTGCTCAACTTCATGG+TGG | 0.677955 | 7.3:+13358622 | MS.gene018613:CDS |
| ACTGATAAGCCAATCCACCA+TGG | 0.685945 | 7.3:-13358906 | None:intergenic |
| CGCTGCCGAGGAGAGCGTGG+AGG | 0.689136 | 7.3:-13357538 | None:intergenic |
| GCTGCCGAATACATCTGCAA+CGG | 0.700251 | 7.3:+13357578 | MS.gene018613:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGAAGAATAAAAAACA+AGG | - | chr7.3:13358830-13358849 | None:intergenic | 15.0% |
| !!! | ATTTATTCATCTTTTTTAAC+CGG | + | chr7.3:13357992-13358011 | MS.gene018613:CDS | 15.0% |
| !! | ATTGGTTAACATAATATTCA+TGG | - | chr7.3:13357744-13357763 | None:intergenic | 20.0% |
| !! | CAATATGTTAAAGAAGTTTA+TGG | + | chr7.3:13358691-13358710 | MS.gene018613:CDS | 20.0% |
| !! | CTTAACATCTTAAAAACTTA+TGG | + | chr7.3:13358310-13358329 | MS.gene018613:CDS | 20.0% |
| !!! | GCATTTTTTTCTATATTTTC+GGG | + | chr7.3:13357786-13357805 | MS.gene018613:CDS | 20.0% |
| !!! | GGCATTTTTTTCTATATTTT+CGG | + | chr7.3:13357785-13357804 | MS.gene018613:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.3:13358842-13358861 | MS.gene018613:CDS | 20.0% |
| ! | AACTATTGGATAAACTAAAC+CGG | - | chr7.3:13358014-13358033 | None:intergenic | 25.0% |
| ! | AATGTTACTGATGTTTGTAA+TGG | + | chr7.3:13358457-13358476 | MS.gene018613:CDS | 25.0% |
| ! | TATGTTAAAGAAGTTTATGG+TGG | + | chr7.3:13358694-13358713 | MS.gene018613:CDS | 25.0% |
| ! | TTAAAAACTTATGGTGAAAG+TGG | + | chr7.3:13358319-13358338 | MS.gene018613:CDS | 25.0% |
| !! | CATAATATTCATGGTGTTTT+TGG | - | chr7.3:13357735-13357754 | None:intergenic | 25.0% |
| !! | TTATGGGAACATTTTTACTT+TGG | + | chr7.3:13358254-13358273 | MS.gene018613:CDS | 25.0% |
| !!! | AAATTTTGGCTATTGTTGTT+TGG | + | chr7.3:13358785-13358804 | MS.gene018613:CDS | 25.0% |
| !!! | AATTTTGGCTATTGTTGTTT+GGG | + | chr7.3:13358786-13358805 | MS.gene018613:CDS | 25.0% |
| !!! | TTCATTGGAAAACACTTTTT+CGG | + | chr7.3:13357842-13357861 | MS.gene018613:CDS | 25.0% |
| AAGATGTTAAGAAAAGAACC+AGG | - | chr7.3:13358301-13358320 | None:intergenic | 30.0% | |
| AGATGTTAAGAAAAGAACCA+GGG | - | chr7.3:13358300-13358319 | None:intergenic | 30.0% | |
| AGATTTGATCATGAAGGTAA+GGG | + | chr7.3:13358196-13358215 | MS.gene018613:CDS | 30.0% | |
| AGTGGTACTTTAGTTGTTAT+GGG | + | chr7.3:13358238-13358257 | MS.gene018613:CDS | 30.0% | |
| ATTGGTAGATTTGATCATGA+AGG | + | chr7.3:13358190-13358209 | MS.gene018613:CDS | 30.0% | |
| TAGATTTGATCATGAAGGTA+AGG | + | chr7.3:13358195-13358214 | MS.gene018613:CDS | 30.0% | |
| TAGTGGTACTTTAGTTGTTA+TGG | + | chr7.3:13358237-13358256 | MS.gene018613:CDS | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.3:13358187-13358206 | None:intergenic | 30.0% | |
| TTTCCAATGAAACCATTAGA+AGG | - | chr7.3:13357833-13357852 | None:intergenic | 30.0% | |
| ! | ATGGATATTTTCTGTATCAG+TGG | + | chr7.3:13357897-13357916 | MS.gene018613:CDS | 30.0% |
| ! | GGAACATTTTTACTTTGGTT+TGG | + | chr7.3:13358259-13358278 | MS.gene018613:CDS | 30.0% |
| ! | GTCAATGAATTTGTTTGCAA+TGG | - | chr7.3:13357612-13357631 | None:intergenic | 30.0% |
| ! | TGGATATTTTCTGTATCAGT+GGG | + | chr7.3:13357898-13357917 | MS.gene018613:CDS | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr7.3:13358082-13358101 | MS.gene018613:CDS | 30.0% |
| !! | GATGTTTGTAATGGTTTGTT+AGG | + | chr7.3:13358466-13358485 | MS.gene018613:CDS | 30.0% |
| !! | TGCACATTTGGTTCAAATTT+TGG | + | chr7.3:13358771-13358790 | MS.gene018613:CDS | 30.0% |
| !!! | CATTTTTACTTTGGTTTGGT+TGG | + | chr7.3:13358263-13358282 | MS.gene018613:CDS | 30.0% |
| ACACCTTCTAATGGTTTCAT+TGG | + | chr7.3:13357827-13357846 | MS.gene018613:CDS | 35.0% | |
| CCATAATCAAAAGACTGAGA+AGG | - | chr7.3:13357881-13357900 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.3:13358331-13358350 | MS.gene018613:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.3:13358338-13358357 | MS.gene018613:CDS | 35.0% | |
| TATTTCAGTTGCACGTTTCT+TGG | - | chr7.3:13358956-13358975 | None:intergenic | 35.0% | |
| TTGATTGAAGGACCAAGAAT+TGG | + | chr7.3:13358172-13358191 | MS.gene018613:CDS | 35.0% | |
| TTGTTCTGTTGTTGATCCAT+GGG | + | chr7.3:13358513-13358532 | MS.gene018613:CDS | 35.0% | |
| TTTATCCAATAGTTGCGCAT+TGG | + | chr7.3:13358020-13358039 | MS.gene018613:CDS | 35.0% | |
| ! | AAGATTATTGGCTGCACATT+TGG | + | chr7.3:13358759-13358778 | MS.gene018613:CDS | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr7.3:13358076-13358095 | MS.gene018613:CDS | 35.0% |
| !! | CCTTCTCAGTCTTTTGATTA+TGG | + | chr7.3:13357878-13357897 | MS.gene018613:CDS | 35.0% |
| !! | GTTTGTAATGGTTTGTTAGG+TGG | + | chr7.3:13358469-13358488 | MS.gene018613:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.3:13358124-13358143 | MS.gene018613:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.3:13358268-13358287 | MS.gene018613:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.3:13358100-13358119 | MS.gene018613:CDS | 35.0% |
| AACAAACCATAAGGCCTATC+TGG | - | chr7.3:13358724-13358743 | None:intergenic | 40.0% | |
| AACGTTTGCAAACAGGTCAT+TGG | + | chr7.3:13358434-13358453 | MS.gene018613:CDS | 40.0% | |
| ATAGAAAAAAATGCCGCCAG+TGG | - | chr7.3:13357780-13357799 | None:intergenic | 40.0% | |
| CAAAACCAATGCGCAACTAT+TGG | - | chr7.3:13358028-13358047 | None:intergenic | 40.0% | |
| CATGGCAAAAACAAGGTAAG+CGG | - | chr7.3:13357672-13357691 | None:intergenic | 40.0% | |
| GAGTTCACATGAAGAAGAGA+TGG | + | chr7.3:13358864-13358883 | MS.gene018613:CDS | 40.0% | |
| GGATTGGATTTAACTAGCCA+TGG | + | chr7.3:13358889-13358908 | MS.gene018613:CDS | 40.0% | |
| GTTGTTCTGTTGTTGATCCA+TGG | + | chr7.3:13358512-13358531 | MS.gene018613:CDS | 40.0% | |
| GTTTCAATGAGAGGACATAG+TGG | + | chr7.3:13358220-13358239 | MS.gene018613:CDS | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.3:13358892-13358911 | MS.gene018613:CDS | 40.0% | |
| TTTATGGTGGTTCACCAGAT+AGG | + | chr7.3:13358707-13358726 | MS.gene018613:CDS | 40.0% | |
| TTTGGGAAACGTTTGCAAAC+AGG | + | chr7.3:13358427-13358446 | MS.gene018613:CDS | 40.0% | |
| ! | AAAAGATTTTCAGACCGAGC+CGG | - | chr7.3:13358073-13358092 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.3:13358350-13358369 | MS.gene018613:CDS | 40.0% |
| ! | CAGCTCTCACTACTTTGTTT+GGG | + | chr7.3:13358410-13358429 | MS.gene018613:CDS | 40.0% |
| ! | GTTTGGGTGAGTGTTACTAT+GGG | + | chr7.3:13358802-13358821 | MS.gene018613:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.3:13358349-13358368 | MS.gene018613:CDS | 40.0% |
| ! | TGTTTGGGTGAGTGTTACTA+TGG | + | chr7.3:13358801-13358820 | MS.gene018613:CDS | 40.0% |
| !! | AGGCCTTATGGTTTGTTGTT+GGG | + | chr7.3:13358727-13358746 | MS.gene018613:CDS | 40.0% |
| !! | TAGGCCTTATGGTTTGTTGT+TGG | + | chr7.3:13358726-13358745 | MS.gene018613:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.3:13358897-13358916 | MS.gene018613:CDS | 40.0% |
| !!! | CAATAGTTGCGCATTGGTTT+TGG | + | chr7.3:13358026-13358045 | MS.gene018613:CDS | 40.0% |
| !!! | CTTGTTTTTGCCATGCAACT+CGG | + | chr7.3:13357677-13357696 | MS.gene018613:CDS | 40.0% |
| !!! | GTTATTGATTTTGCTGGCTG+TGG | + | chr7.3:13358106-13358125 | MS.gene018613:CDS | 40.0% |
| !!! | TTTTGGGGTGCTTTGATTGA+AGG | + | chr7.3:13358160-13358179 | MS.gene018613:CDS | 40.0% |
| ACTGATAAGCCAATCCACCA+TGG | - | chr7.3:13358909-13358928 | None:intergenic | 45.0% | |
| CAAGGTAAGCGGAAAAGAGA+AGG | - | chr7.3:13357661-13357680 | None:intergenic | 45.0% | |
| CAGTATCATGAAGAGCCTGA+AGG | + | chr7.3:13358925-13358944 | MS.gene018613:CDS | 45.0% | |
| CCTCCCAACAACAAACCATA+AGG | - | chr7.3:13358733-13358752 | None:intergenic | 45.0% | |
| CGAGTTGCATGGCAAAAACA+AGG | - | chr7.3:13357679-13357698 | None:intergenic | 45.0% | |
| CTTGAAGCTGCTCAACTTCA+TGG | + | chr7.3:13358619-13358638 | MS.gene018613:CDS | 45.0% | |
| GAAGCCGTTGCAGATGTATT+CGG | - | chr7.3:13357585-13357604 | None:intergenic | 45.0% | |
| GACAGCTGTGACAACTACAT+TGG | + | chr7.3:13358375-13358394 | MS.gene018613:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.3:13358409-13358428 | MS.gene018613:CDS | 45.0% | |
| GTAAGCGGAAAAGAGAAGGT+AGG | - | chr7.3:13357657-13357676 | None:intergenic | 45.0% | |
| TCACATGAAGAAGAGATGGC+TGG | + | chr7.3:13358868-13358887 | MS.gene018613:CDS | 45.0% | |
| TGAAGAAGAGATGGCTGGAT+TGG | + | chr7.3:13358873-13358892 | MS.gene018613:CDS | 45.0% | |
| TGAAGTTGAGCAGCTTCAAG+AGG | - | chr7.3:13358619-13358638 | None:intergenic | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+CGG | + | chr7.3:13358529-13358548 | MS.gene018613:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.3:13358490-13358509 | MS.gene018613:CDS | 45.0% |
| ! | TTCGGGTTTGCCTTTGCTTT+CGG | + | chr7.3:13357803-13357822 | MS.gene018613:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.3:13358043-13358062 | MS.gene018613:CDS | 45.0% |
| !! | CCTTATGGTTTGTTGTTGGG+AGG | + | chr7.3:13358730-13358749 | MS.gene018613:CDS | 45.0% |
| !! | GGTAAGGGTGTTTCAATGAG+AGG | + | chr7.3:13358211-13358230 | MS.gene018613:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.3:13358042-13358061 | MS.gene018613:CDS | 45.0% |
| !! | TATGGTTTGTTGTTGGGAGG+TGG | + | chr7.3:13358733-13358752 | MS.gene018613:CDS | 45.0% |
| !!! | CATGGTGTTTTTGGCACGAA+CGG | - | chr7.3:13357726-13357745 | None:intergenic | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.3:13358037-13358056 | MS.gene018613:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.3:13358280-13358299 | MS.gene018613:CDS | 45.0% |
| AATGTTCTTGATGCCGCCAC+TGG | + | chr7.3:13357761-13357780 | MS.gene018613:CDS | 50.0% | |
| AGTGGCGGCATCAAGAACAT+TGG | - | chr7.3:13357762-13357781 | None:intergenic | 50.0% | |
| CATGGCAAAACCGAGTTGCA+TGG | - | chr7.3:13357690-13357709 | None:intergenic | 50.0% | |
| CATTTAGTTGGCGCAGTTGC+TGG | + | chr7.3:13358136-13358155 | MS.gene018613:CDS | 50.0% | |
| CCGCAAATAATTGCAGCCCA+TGG | - | chr7.3:13358532-13358551 | None:intergenic | 50.0% | |
| CGTTTCTTGGAACGTCCTTC+AGG | - | chr7.3:13358943-13358962 | None:intergenic | 50.0% | |
| GAAAAAAATGCCGCCAGTGG+CGG | - | chr7.3:13357777-13357796 | None:intergenic | 50.0% | |
| GAAGCTGCTCAACTTCATGG+TGG | + | chr7.3:13358622-13358641 | MS.gene018613:CDS | 50.0% | |
| GCTCAACTTCATGGTGGTTG+TGG | + | chr7.3:13358628-13358647 | MS.gene018613:CDS | 50.0% | |
| GCTGCCGAATACATCTGCAA+CGG | + | chr7.3:13357578-13357597 | MS.gene018613:CDS | 50.0% | |
| GCTGTGACAACTACATTGGC+TGG | + | chr7.3:13358379-13358398 | MS.gene018613:CDS | 50.0% | |
| GCTTTCGGCACACCTTCTAA+TGG | + | chr7.3:13357818-13357837 | MS.gene018613:CDS | 50.0% | |
| GGTTCACCAGATAGGCCTTA+TGG | + | chr7.3:13358715-13358734 | MS.gene018613:CDS | 50.0% | |
| GTTGCAGATGTATTCGGCAG+CGG | - | chr7.3:13357579-13357598 | None:intergenic | 50.0% | |
| TCATGGTGGTTGTGGCACAT+GGG | + | chr7.3:13358636-13358655 | MS.gene018613:CDS | 50.0% | |
| TTCATGGTGGTTGTGGCACA+TGG | + | chr7.3:13358635-13358654 | MS.gene018613:CDS | 50.0% | |
| ! | AGAAGGTGTGCCGAAAGCAA+AGG | - | chr7.3:13357816-13357835 | None:intergenic | 50.0% |
| ! | GCTTTTGCAATTGCTGCAGC+AGG | + | chr7.3:13357920-13357939 | MS.gene018613:CDS | 50.0% |
| ! | GTAGGTGTTGTCAACAGCGT+AGG | - | chr7.3:13357639-13357658 | None:intergenic | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.3:13358353-13358372 | MS.gene018613:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.3:13358747-13358766 | MS.gene018613:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.3:13358041-13358060 | MS.gene018613:CDS | 50.0% |
| !! | GTTGCTGCGTGGGTTTTGAT+TGG | + | chr7.3:13358556-13358575 | MS.gene018613:CDS | 50.0% |
| !! | TTGCGGATTTGTTGCTGCGT+GGG | + | chr7.3:13358546-13358565 | MS.gene018613:CDS | 50.0% |
| !! | TTTGCGGATTTGTTGCTGCG+TGG | + | chr7.3:13358545-13358564 | MS.gene018613:CDS | 50.0% |
| !!! | TGGCGCAGTTGCTGGTTTTT+GGG | + | chr7.3:13358144-13358163 | MS.gene018613:CDS | 50.0% |
| !!! | TTGGCGCAGTTGCTGGTTTT+TGG | + | chr7.3:13358143-13358162 | MS.gene018613:CDS | 50.0% |
| AACGGAACCAGCGCAAAGCA+TGG | - | chr7.3:13357708-13357727 | None:intergenic | 55.0% | |
| ATGGTGGTTGTGGCACATGG+GGG | + | chr7.3:13358638-13358657 | MS.gene018613:CDS | 55.0% | |
| CATGGTGGTTGTGGCACATG+GGG | + | chr7.3:13358637-13358656 | MS.gene018613:CDS | 55.0% | |
| GCTGCAGCAGGAATCACTAG+TGG | + | chr7.3:13357932-13357951 | MS.gene018613:CDS | 55.0% | |
| TGCTGATGGTTGGGGTAGTC+CGG | + | chr7.3:13358051-13358070 | MS.gene018613:CDS | 55.0% | |
| ! | GGTTTTGCCATGCTTTGCGC+TGG | + | chr7.3:13357698-13357717 | MS.gene018613:CDS | 55.0% |
| !! | GGTTTGTTGTTGGGAGGTGG+TGG | + | chr7.3:13358736-13358755 | MS.gene018613:CDS | 55.0% |
| !!! | GGCGCAGTTGCTGGTTTTTG+GGG | + | chr7.3:13358145-13358164 | MS.gene018613:CDS | 55.0% |
| ATGGTTGGGGTAGTCCGGCT+CGG | + | chr7.3:13358056-13358075 | MS.gene018613:CDS | 60.0% | |
| GATGTATTCGGCAGCGGCTG+TGG | - | chr7.3:13357573-13357592 | None:intergenic | 60.0% | |
| GTTCTTGATGCCGCCACTGG+CGG | + | chr7.3:13357764-13357783 | MS.gene018613:CDS | 60.0% | |
| TCCGACCTCCACGCTCTCCT+CGG | + | chr7.3:13357533-13357552 | MS.gene018613:CDS | 65.0% | |
| TGGAGTTTGCACCGCTGCCG+AGG | - | chr7.3:13357553-13357572 | None:intergenic | 65.0% | |
| CTCCACGCTCTCCTCGGCAG+CGG | + | chr7.3:13357539-13357558 | MS.gene018613:CDS | 70.0% | |
| ! | GAGAGCGTGGAGGTCGGAGG+CGG | - | chr7.3:13357531-13357550 | None:intergenic | 70.0% |
| ! | GAGGAGAGCGTGGAGGTCGG+AGG | - | chr7.3:13357534-13357553 | None:intergenic | 70.0% |
| ! | GCCGAGGAGAGCGTGGAGGT+CGG | - | chr7.3:13357537-13357556 | None:intergenic | 70.0% |
| CACCGCTGCCGAGGAGAGCG+TGG | - | chr7.3:13357544-13357563 | None:intergenic | 75.0% | |
| GTGGAGGTCGGAGGCGGAGC+AGG | - | chr7.3:13357525-13357544 | None:intergenic | 75.0% | |
| ! | CGCTGCCGAGGAGAGCGTGG+AGG | - | chr7.3:13357541-13357560 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 13357509 | 13358978 | 13357509 | ID=MS.gene018613 |
| chr7.3 | mRNA | 13357509 | 13358978 | 13357509 | ID=MS.gene018613.t1;Parent=MS.gene018613 |
| chr7.3 | exon | 13357509 | 13358978 | 13357509 | ID=MS.gene018613.t1.exon1;Parent=MS.gene018613.t1 |
| chr7.3 | CDS | 13357509 | 13358978 | 13357509 | ID=cds.MS.gene018613.t1;Parent=MS.gene018613.t1 |
| Gene Sequence |
| Protein sequence |
