Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019557.t1 | XP_013444890.1 | 94.6 | 1174 | 63 | 0 | 1 | 1174 | 1 | 1174 | 0.00E+00 | 1908.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019557.t1 | O65272 | 64.6 | 1088 | 344 | 7 | 61 | 1145 | 93 | 1142 | 0.0e+00 | 1189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019557.t1 | A0A072TZG2 | 94.6 | 1174 | 63 | 0 | 1 | 1174 | 1 | 1174 | 0.0e+00 | 1908.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056723 | MS.gene019557 | PPI |
| MS.gene019557 | MS.gene025832 | PPI |
| MS.gene019557 | MS.gene22770 | PPI |
| MS.gene023837 | MS.gene019557 | PPI |
| MS.gene024366 | MS.gene019557 | PPI |
| MS.gene52206 | MS.gene019557 | PPI |
| MS.gene069261 | MS.gene019557 | PPI |
| MS.gene27690 | MS.gene019557 | PPI |
| MS.gene019557 | MS.gene050727 | PPI |
| MS.gene019557 | MS.gene056723 | PPI |
| MS.gene001757 | MS.gene019557 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019557.t1 | MTR_8g031550 | 96.763 | 1174 | 38 | 0 | 1 | 1174 | 1 | 1174 | 0.0 | 2285 |
| MS.gene019557.t1 | MTR_8g031550 | 96.570 | 1137 | 39 | 0 | 1 | 1137 | 1 | 1137 | 0.0 | 2207 |
| MS.gene019557.t1 | MTR_7g076700 | 90.180 | 611 | 58 | 1 | 565 | 1173 | 1 | 611 | 0.0 | 1024 |
| MS.gene019557.t1 | MTR_4g092790 | 37.599 | 633 | 345 | 13 | 573 | 1170 | 110 | 727 | 4.66e-98 | 330 |
| MS.gene019557.t1 | MTR_4g092790 | 38.795 | 531 | 282 | 10 | 574 | 1070 | 111 | 632 | 1.40e-84 | 289 |
| MS.gene019557.t1 | MTR_1g016450 | 31.302 | 361 | 231 | 6 | 595 | 948 | 189 | 539 | 1.30e-41 | 162 |
| MS.gene019557.t1 | MTR_0050s0160 | 31.564 | 358 | 234 | 5 | 595 | 948 | 181 | 531 | 5.49e-39 | 154 |
| MS.gene019557.t1 | MTR_8g101640 | 30.194 | 361 | 238 | 6 | 595 | 948 | 187 | 540 | 9.79e-32 | 132 |
| MS.gene019557.t1 | MTR_8g101640 | 30.194 | 361 | 238 | 6 | 595 | 948 | 187 | 540 | 1.04e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019557.t1 | AT4G00630 | 70.404 | 1115 | 292 | 9 | 61 | 1173 | 93 | 1171 | 0.0 | 1418 |
| MS.gene019557.t1 | AT4G00630 | 69.716 | 1126 | 292 | 10 | 61 | 1173 | 93 | 1182 | 0.0 | 1409 |
| MS.gene019557.t1 | AT1G01790 | 70.125 | 1118 | 310 | 8 | 61 | 1174 | 93 | 1190 | 0.0 | 1376 |
| MS.gene019557.t1 | AT1G01790 | 70.125 | 1118 | 310 | 8 | 61 | 1174 | 93 | 1190 | 0.0 | 1376 |
| MS.gene019557.t1 | AT4G04850 | 37.724 | 615 | 338 | 9 | 573 | 1155 | 106 | 707 | 2.08e-108 | 358 |
| MS.gene019557.t1 | AT4G04850 | 39.057 | 530 | 280 | 8 | 573 | 1070 | 106 | 624 | 1.68e-95 | 319 |
| MS.gene019557.t1 | AT5G51710 | 31.818 | 396 | 221 | 7 | 579 | 948 | 154 | 526 | 1.46e-43 | 168 |
| MS.gene019557.t1 | AT5G51710 | 31.818 | 396 | 221 | 7 | 579 | 948 | 154 | 526 | 1.46e-43 | 168 |
| MS.gene019557.t1 | AT5G11800 | 32.584 | 356 | 229 | 5 | 595 | 946 | 199 | 547 | 1.18e-37 | 150 |
| MS.gene019557.t1 | AT2G19600 | 33.053 | 357 | 230 | 5 | 595 | 948 | 191 | 541 | 2.49e-37 | 150 |
Find 269 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAATTCGGGGTCGATTTC+TGG | 0.152094 | 8.1:-70607777 | MS.gene019557:CDS |
| CATATCATTATTTGTGGATT+TGG | 0.179581 | 8.1:-70601274 | MS.gene019557:CDS |
| AATAACTTTCTTAATTCTAT+TGG | 0.199658 | 8.1:+70606038 | None:intergenic |
| TCTGGGGATGCTGCTGTTAA+AGG | 0.201726 | 8.1:-70606970 | MS.gene019557:CDS |
| CAATCGTCCACCTGCAATTA+TGG | 0.226201 | 8.1:+70603285 | None:intergenic |
| TCCATATCGTGGCCTTCTAT+TGG | 0.230867 | 8.1:-70602409 | MS.gene019557:CDS |
| GGAATCTTGATTGGGCCTTA+TGG | 0.234602 | 8.1:-70605296 | MS.gene019557:CDS |
| ACAAAAGCAATCGCTGAATT+TGG | 0.245623 | 8.1:-70605245 | MS.gene019557:CDS |
| ATAACTTTCTTAATTCTATT+GGG | 0.250220 | 8.1:+70606039 | None:intergenic |
| TTCTACACTTGATATTATTC+AGG | 0.254039 | 8.1:-70607541 | MS.gene019557:CDS |
| GAATTTGCATTTGTGGCTTT+TGG | 0.256556 | 8.1:-70601955 | MS.gene019557:CDS |
| TCGATTTCTGGTGCGGAATT+AGG | 0.265139 | 8.1:-70607765 | MS.gene019557:CDS |
| TCAAGTAGCCGTTGAATCTT+TGG | 0.282073 | 8.1:-70607439 | MS.gene019557:CDS |
| GGCAGGCCTGTCCATGGCTT+TGG | 0.282963 | 8.1:-70602499 | MS.gene019557:CDS |
| AATACACTCTTCGTTGTTCT+TGG | 0.290031 | 8.1:-70602674 | MS.gene019557:CDS |
| CTCTGCTCTGTTGGCATAGA+AGG | 0.291686 | 8.1:+70606161 | None:intergenic |
| ACTGTGGTTGCAATGACTTC+TGG | 0.303111 | 8.1:+70606114 | None:intergenic |
| CCTCCCCGAGGAGGAGAAAT+TGG | 0.306737 | 8.1:-70607004 | MS.gene019557:CDS |
| AATCTTCATGTCGACCCTTC+AGG | 0.308939 | 8.1:+70599438 | None:intergenic |
| CAGTCCTGTTCTTGGTTACT+TGG | 0.309415 | 8.1:-70605324 | MS.gene019557:CDS |
| ACCCCTCCTTTGGAAGAATT+AGG | 0.314078 | 8.1:+70603739 | None:intergenic |
| TTGAATGAGGAGTCGAATTC+GGG | 0.315929 | 8.1:-70607789 | MS.gene019557:CDS |
| TTGTTGACTGCCGCAGTGAT+TGG | 0.316409 | 8.1:-70604646 | MS.gene019557:CDS |
| ATATCATTATTTGTGGATTT+GGG | 0.319009 | 8.1:-70601273 | MS.gene019557:CDS |
| TCAAACTTTCCAGTCATCAT+AGG | 0.319436 | 8.1:-70602093 | MS.gene019557:CDS |
| CGAACAAAAGTCTTCACATT+TGG | 0.319475 | 8.1:+70600582 | None:intergenic |
| CAAGCCATTGCTGAAGCTCT+TGG | 0.320715 | 8.1:-70603343 | MS.gene019557:CDS |
| CAGTTGTGTCTTCCAAGGTT+TGG | 0.326284 | 8.1:+70606872 | None:intergenic |
| GCAGGCCTGTCCATGGCTTT+GGG | 0.327407 | 8.1:-70602498 | MS.gene019557:CDS |
| TTGGCAGCTGGAATCTTGAT+TGG | 0.327611 | 8.1:-70605305 | MS.gene019557:CDS |
| GGAACAGCAAAGAGGACAAC+TGG | 0.335158 | 8.1:+70601704 | None:intergenic |
| ACACTCTTGGTTGCTTTAAT+CGG | 0.336141 | 8.1:-70602042 | MS.gene019557:CDS |
| TGTTTAGGCAGTCCTGTTCT+TGG | 0.338649 | 8.1:-70605332 | MS.gene019557:intron |
| CGTGATCATATCATTATTTG+TGG | 0.340749 | 8.1:-70601280 | MS.gene019557:CDS |
| TTTGAATGAGGAGTCGAATT+CGG | 0.348114 | 8.1:-70607790 | MS.gene019557:CDS |
| TCTTTGCTGTTCCTTGTTGT+CGG | 0.349050 | 8.1:-70601694 | MS.gene019557:CDS |
| ATGTCGACCCTTCAGGGACT+TGG | 0.349402 | 8.1:+70599445 | None:intergenic |
| TGGAGGAGAATTTGCATTTG+TGG | 0.349698 | 8.1:-70601962 | MS.gene019557:CDS |
| ATCAAGTGGTGACGAGTCTT+TGG | 0.350895 | 8.1:-70606935 | MS.gene019557:CDS |
| AGTAAATAGTATTGTGTTTG+AGG | 0.355110 | 8.1:-70607637 | MS.gene019557:CDS |
| GTGAACCTTTGGGAGAAGTT+GGG | 0.355846 | 8.1:-70607743 | MS.gene019557:CDS |
| TAGTATTGTGTTTGAGGAAA+AGG | 0.360431 | 8.1:-70607631 | MS.gene019557:CDS |
| CCATATCGTGGCCTTCTATT+GGG | 0.365356 | 8.1:-70602408 | MS.gene019557:CDS |
| AGACTTGGTTCCAAGGTCTC+TGG | 0.367740 | 8.1:+70600314 | None:intergenic |
| TCAATGAAGAAATATGTCTT+TGG | 0.369826 | 8.1:-70605077 | MS.gene019557:CDS |
| ATTGTTGGGTTATTGTTAGT+TGG | 0.370050 | 8.1:-70606559 | MS.gene019557:CDS |
| GGCCCTGCTGCTATTGTCAT+TGG | 0.370451 | 8.1:-70604592 | MS.gene019557:CDS |
| CCAGGCCAATATTAAATAAC+AGG | 0.371755 | 8.1:+70605213 | None:intergenic |
| AGTGGAAGTTCTCTTGGATA+TGG | 0.372199 | 8.1:-70599525 | MS.gene019557:CDS |
| GCCTCTAGTTAGACAACTTC+AGG | 0.373121 | 8.1:-70606067 | MS.gene019557:CDS |
| ATACACTCTTCGTTGTTCTT+GGG | 0.374043 | 8.1:-70602673 | MS.gene019557:CDS |
| TTAGGGGAAATAGGGGAGTT+TGG | 0.376574 | 8.1:-70607884 | MS.gene019557:CDS |
| CCTTGTTGTCGGAATTTCAA+TGG | 0.377928 | 8.1:-70601683 | MS.gene019557:CDS |
| TCTGCAATCTGCTTGTATAT+AGG | 0.380038 | 8.1:+70602725 | None:intergenic |
| GAACAAAAGTCTTCACATTT+GGG | 0.380559 | 8.1:+70600583 | None:intergenic |
| TCCATCACTGCCATAATTGC+AGG | 0.381757 | 8.1:-70603295 | MS.gene019557:CDS |
| TATCTGAGTGATCATGATAA+TGG | 0.382966 | 8.1:-70606841 | MS.gene019557:CDS |
| AGAAAGTGTTACCCCTCCTT+TGG | 0.384451 | 8.1:+70603729 | None:intergenic |
| AAGTTTGAAAGAAGAAGTTT+TGG | 0.389427 | 8.1:+70602108 | None:intergenic |
| TCAATCATTCGCAATGTTCA+TGG | 0.392174 | 8.1:-70605269 | MS.gene019557:CDS |
| ATCTTCATGTCGACCCTTCA+GGG | 0.395481 | 8.1:+70599439 | None:intergenic |
| TGAATCGGGAGATTGCGTTT+TGG | 0.396360 | 8.1:+70599479 | None:intergenic |
| GGGAGTTTGGCTTAAGTGTC+AGG | 0.396760 | 8.1:-70607871 | MS.gene019557:CDS |
| GGGTTATTGTTAGTTGGAGC+AGG | 0.397102 | 8.1:-70606553 | MS.gene019557:CDS |
| AATTACCAAAGCTGATTGTT+GGG | 0.398583 | 8.1:-70606573 | MS.gene019557:CDS |
| GTTCTTGGTTACTTGGCAGC+TGG | 0.402461 | 8.1:-70605317 | MS.gene019557:CDS |
| TGTGTCTTCCAAGGTTTGGC+TGG | 0.402506 | 8.1:+70606876 | None:intergenic |
| TGCGGAATTAGGTGAACCTT+TGG | 0.404082 | 8.1:-70607754 | MS.gene019557:CDS |
| GGTGAACCTTTGGGAGAAGT+TGG | 0.405179 | 8.1:-70607744 | MS.gene019557:CDS |
| CCCAATAGAAGGCCACGATA+TGG | 0.406247 | 8.1:+70602408 | None:intergenic |
| GTTGGGCTACTTCTTGCTCC+TGG | 0.409684 | 8.1:-70601982 | MS.gene019557:CDS |
| CTTCCCTCTTTGACATGCTC+TGG | 0.409952 | 8.1:-70605902 | MS.gene019557:CDS |
| TTTGCATATGATAATGGAAA+TGG | 0.410006 | 8.1:-70607837 | MS.gene019557:CDS |
| CAATTACCAAAGCTGATTGT+TGG | 0.411302 | 8.1:-70606574 | MS.gene019557:CDS |
| GATGGAAACTGCAGCCTTAA+CGG | 0.412543 | 8.1:+70603312 | None:intergenic |
| GAAACAAGTGGAAGTTCTCT+TGG | 0.412594 | 8.1:-70599531 | MS.gene019557:CDS |
| AACATCATGTTGCTCAAAAC+GGG | 0.413917 | 8.1:+70601618 | None:intergenic |
| CATTATGTTTGTGGCCAAGC+TGG | 0.417891 | 8.1:-70604613 | MS.gene019557:CDS |
| ATAAGGTTCTACACAAAGTC+GGG | 0.419183 | 8.1:-70600689 | MS.gene019557:intron |
| TCTTGGTCTGGCTGCCGTTA+AGG | 0.420656 | 8.1:-70603326 | MS.gene019557:CDS |
| TGAACCAATTTCTCCTCCTC+GGG | 0.421007 | 8.1:+70607000 | None:intergenic |
| TGGCAGCTGGAATCTTGATT+GGG | 0.421882 | 8.1:-70605304 | MS.gene019557:CDS |
| GACTTGGTTCCAAGGTCTCT+GGG | 0.426943 | 8.1:+70600315 | None:intergenic |
| AAAGATCGGACCTCTTGTTC+AGG | 0.430406 | 8.1:+70606006 | None:intergenic |
| CAATAGCAGCAGGGCCAGCT+TGG | 0.431785 | 8.1:+70604599 | None:intergenic |
| TGCAAACTATAGAACGGTTT+GGG | 0.433926 | 8.1:-70600622 | MS.gene019557:CDS |
| CTTCGCCTAGCCATGGCGTA+AGG | 0.435910 | 8.1:+70601659 | None:intergenic |
| GTGCAAACTATAGAACGGTT+TGG | 0.437808 | 8.1:-70600623 | MS.gene019557:CDS |
| CCAGTGTACTTTGGTGATGC+TGG | 0.439570 | 8.1:-70600791 | MS.gene019557:CDS |
| GCCCTGCTGCTATTGTCATT+GGG | 0.440144 | 8.1:-70604591 | MS.gene019557:CDS |
| CATTGCTGAAGCTCTTGGTC+TGG | 0.440789 | 8.1:-70603338 | MS.gene019557:CDS |
| AACTAGAGGCCTTGCACTTG+TGG | 0.443751 | 8.1:+70606080 | None:intergenic |
| TGTTGACTGCCGCAGTGATT+GGG | 0.450350 | 8.1:-70604645 | MS.gene019557:CDS |
| GCTTTGCAGCCTCAAGTTCA+AGG | 0.450666 | 8.1:+70607127 | None:intergenic |
| CTCAGTGAAAGAGTGGCAAT+TGG | 0.450902 | 8.1:-70600830 | MS.gene019557:intron |
| ATTGTTGCAAAAGGCGTTGA+AGG | 0.451380 | 8.1:-70607676 | MS.gene019557:CDS |
| TTGGGAGTCGTCAATTGAAT+CGG | 0.453585 | 8.1:+70599464 | None:intergenic |
| CCAGTCATCATAGGGACATT+GGG | 0.458443 | 8.1:-70602084 | MS.gene019557:CDS |
| ATTGAAAGAATTGTTGCAAA+AGG | 0.460740 | 8.1:-70607685 | MS.gene019557:CDS |
| TGAATTCAGATCCCGCCATC+TGG | 0.460895 | 8.1:-70599680 | MS.gene019557:CDS |
| AGAAGTAGAGGTACAAAGTG+TGG | 0.461568 | 8.1:-70607712 | MS.gene019557:CDS |
| GAAGAATTAGGTGAGATAAG+AGG | 0.462901 | 8.1:+70603751 | None:intergenic |
| CAGTCAAAACTAGCTTTCAA+TGG | 0.465476 | 8.1:-70608026 | MS.gene019557:CDS |
| TGGATTTGGGCGAGTTGGCC+AGG | 0.468323 | 8.1:-70601260 | MS.gene019557:intron |
| ATTATATCCGCCATCAGAGT+TGG | 0.468404 | 8.1:-70602000 | MS.gene019557:CDS |
| AGAACTCCTCTCTGCTCTGT+TGG | 0.468711 | 8.1:+70606152 | None:intergenic |
| TAAAGAAGAGACCCAATAGA+AGG | 0.471027 | 8.1:+70602397 | None:intergenic |
| AACACGTACTTCTGTAAGTT+CGG | 0.472009 | 8.1:+70599657 | None:intergenic |
| GCGGAATTAGGTGAACCTTT+GGG | 0.472698 | 8.1:-70607753 | MS.gene019557:CDS |
| CAAACTTTCCAGTCATCATA+GGG | 0.474876 | 8.1:-70602092 | MS.gene019557:CDS |
| ATCAACTGCTGTTGTTCTGC+AGG | 0.475889 | 8.1:-70604551 | MS.gene019557:intron |
| AGTGATGGTGGTAAAGATGT+AGG | 0.476621 | 8.1:-70607372 | MS.gene019557:CDS |
| CCTGTTATTTAATATTGGCC+TGG | 0.477654 | 8.1:-70605213 | MS.gene019557:CDS |
| TAAAGAACGTGTGGTTGCTC+AGG | 0.478283 | 8.1:-70607340 | MS.gene019557:CDS |
| GGACTTCTTCAATGATGACT+TGG | 0.478916 | 8.1:+70606696 | None:intergenic |
| AAGAAATATGTCTTTGGAGT+AGG | 0.480048 | 8.1:-70605071 | MS.gene019557:CDS |
| AATAACCCAACAATCAGCTT+TGG | 0.483682 | 8.1:+70606568 | None:intergenic |
| CTTCTGTAAGTTCGGCCAGA+TGG | 0.483713 | 8.1:+70599665 | None:intergenic |
| GTTCTACACAAAGTCGGGGC+TGG | 0.484596 | 8.1:-70600684 | MS.gene019557:CDS |
| CCCAATGTCCCTATGATGAC+TGG | 0.486332 | 8.1:+70602084 | None:intergenic |
| AATATCAGATTCGACCTGTA+AGG | 0.487051 | 8.1:+70602434 | None:intergenic |
| TCCAGTCATCATAGGGACAT+TGG | 0.492149 | 8.1:-70602085 | MS.gene019557:CDS |
| ATTGGGTCTCTTCTTTATGA+CGG | 0.493571 | 8.1:-70602391 | MS.gene019557:intron |
| TTGAACCAATTTCTCCTCCT+CGG | 0.493901 | 8.1:+70606999 | None:intergenic |
| GGTTATTGTTAGTTGGAGCA+GGG | 0.495984 | 8.1:-70606552 | MS.gene019557:intron |
| GCTGCTATTGTCATTGGGAA+TGG | 0.496046 | 8.1:-70604586 | MS.gene019557:CDS |
| TGAACCTTTGGGAGAAGTTG+GGG | 0.496175 | 8.1:-70607742 | MS.gene019557:CDS |
| AGGAATGTTGATAATTTGAA+AGG | 0.496409 | 8.1:-70607813 | MS.gene019557:CDS |
| CAATAAAACCAGCCAAACCT+TGG | 0.498510 | 8.1:-70606884 | MS.gene019557:CDS |
| TACACAAAGTCGGGGCTGGA+AGG | 0.499550 | 8.1:-70600680 | MS.gene019557:CDS |
| CGCACATCTAGTGCGACAAA+AGG | 0.499834 | 8.1:+70601126 | None:intergenic |
| GGACCAGCCTTCTCACAGCC+AGG | 0.504227 | 8.1:-70602652 | MS.gene019557:CDS |
| TGTAAGTTCGGCCAGATGGC+GGG | 0.505604 | 8.1:+70599669 | None:intergenic |
| ACCTGCAATTATGGCAGTGA+TGG | 0.505797 | 8.1:+70603294 | None:intergenic |
| TGGCCTCCTTCGCCTAGCCA+TGG | 0.505900 | 8.1:+70601652 | None:intergenic |
| GCAGGTTGTCCCAGAGACCT+TGG | 0.506912 | 8.1:-70600324 | MS.gene019557:intron |
| TTGGATCTCCCAGTGTACTT+TGG | 0.508846 | 8.1:-70600800 | MS.gene019557:CDS |
| TTCCCAATGACAATAGCAGC+AGG | 0.509400 | 8.1:+70604589 | None:intergenic |
| AGTGGCAATTGGGCGTTCGT+TGG | 0.514106 | 8.1:-70600819 | MS.gene019557:CDS |
| TGCCGCAGTGATTGGGTTGG+TGG | 0.514120 | 8.1:-70604638 | MS.gene019557:CDS |
| GAACATCATGTTGCTCAAAA+CGG | 0.515385 | 8.1:+70601617 | None:intergenic |
| TTATATCCGCCATCAGAGTT+GGG | 0.516934 | 8.1:-70601999 | MS.gene019557:CDS |
| TACAACTTCCAAAGATTCAA+CGG | 0.518209 | 8.1:+70607431 | None:intergenic |
| ACCGTTCTATAGTTTGCACC+AGG | 0.520142 | 8.1:+70600627 | None:intergenic |
| GCTGCCAAGTAACCAAGAAC+AGG | 0.520723 | 8.1:+70605320 | None:intergenic |
| TATTGTCATTGGGAATGGCC+TGG | 0.520859 | 8.1:-70604581 | MS.gene019557:CDS |
| AGATTCAGTTGTGTCTTCCA+AGG | 0.521068 | 8.1:+70606867 | None:intergenic |
| ATTTGTGGATTTGGGCGAGT+TGG | 0.521361 | 8.1:-70601265 | MS.gene019557:CDS |
| CGAATGATTGAGAGTCCATA+AGG | 0.521519 | 8.1:+70605281 | None:intergenic |
| AAGAACAACGAAGAGTGTAT+TGG | 0.522092 | 8.1:+70602676 | None:intergenic |
| TGTCGACCCTTCAGGGACTT+GGG | 0.524549 | 8.1:+70599446 | None:intergenic |
| TACCCTGGCTGTGAGAAGGC+TGG | 0.525501 | 8.1:+70602649 | None:intergenic |
| TGAAGTTGAATTTGTTGTGT+AGG | 0.526097 | 8.1:-70607920 | MS.gene019557:CDS |
| CACCTAATTCTTCCAAAGGA+GGG | 0.528065 | 8.1:-70603741 | MS.gene019557:CDS |
| TAACTTTCTTAATTCTATTG+GGG | 0.530540 | 8.1:+70606040 | None:intergenic |
| TGGGAGTCGTCAATTGAATC+GGG | 0.531569 | 8.1:+70599465 | None:intergenic |
| TCAGTGAAAGAGTGGCAATT+GGG | 0.532279 | 8.1:-70600829 | MS.gene019557:intron |
| GCTGCGGCTAGTTGAAGACT+TGG | 0.532868 | 8.1:+70600299 | None:intergenic |
| CGTGCTCATGATGTTACTCA+TGG | 0.534906 | 8.1:-70600561 | MS.gene019557:CDS |
| TTCAAGGGCAACAGCTTGCT+CGG | 0.537374 | 8.1:+70607143 | None:intergenic |
| CGTTCTATAGTTTGCACCAG+GGG | 0.538059 | 8.1:+70600629 | None:intergenic |
| AGCTGTTGCCCTTGAACTTG+AGG | 0.538767 | 8.1:-70607136 | MS.gene019557:CDS |
| CATAATTGCAGGTGGACGAT+TGG | 0.539123 | 8.1:-70603284 | MS.gene019557:intron |
| ACAAATGCAAATTCTCCTCC+AGG | 0.540322 | 8.1:+70601964 | None:intergenic |
| AATCTCACCTCACTTTCTAC+AGG | 0.541395 | 8.1:+70601583 | None:intergenic |
| TTGGTGGCGCATTATGTTTG+TGG | 0.542659 | 8.1:-70604622 | MS.gene019557:CDS |
| ATGCTCCCAAAGCCATGGAC+AGG | 0.542672 | 8.1:+70602493 | None:intergenic |
| GACTTCTTCAATGATGACTT+GGG | 0.543521 | 8.1:+70606697 | None:intergenic |
| TTCGCCTAGCCATGGCGTAA+GGG | 0.544115 | 8.1:+70601660 | None:intergenic |
| ACGCCATGGCTAGGCGAAGG+AGG | 0.551257 | 8.1:-70601655 | MS.gene019557:CDS |
| TGTGGAAACTTCTTCAACTG+TGG | 0.551640 | 8.1:+70606098 | None:intergenic |
| AGGTCCACAACATCTTCTAC+TGG | 0.551950 | 8.1:+70607024 | None:intergenic |
| TTCTACTGGTAGAGTATCTG+TGG | 0.552448 | 8.1:+70607038 | None:intergenic |
| GATATGTGGCAAGACACTCT+TGG | 0.553449 | 8.1:-70602055 | MS.gene019557:CDS |
| ATCTCACCTAATTCTTCCAA+AGG | 0.553468 | 8.1:-70603745 | MS.gene019557:CDS |
| GACAATTATAGTTCCGCACA+AGG | 0.553709 | 8.1:-70607405 | MS.gene019557:CDS |
| GACTGCTGTGAAAGCGGAGG+AGG | 0.555427 | 8.1:-70607190 | MS.gene019557:CDS |
| CAAAACGGGAAGCAATCAGC+TGG | 0.555442 | 8.1:+70601632 | None:intergenic |
| CTTTGGAGTAGGCTCTGCTC+AGG | 0.555662 | 8.1:-70605060 | MS.gene019557:intron |
| GTTATTTAATATTGGCCTGG+AGG | 0.557808 | 8.1:-70605210 | MS.gene019557:intron |
| CAATCATTCGCAATGTTCAT+GGG | 0.558027 | 8.1:-70605268 | MS.gene019557:CDS |
| ACTCTCGTTGGAACCTTGTG+CGG | 0.560540 | 8.1:+70607392 | None:intergenic |
| CTCTTTCTTTAGCTGAGGCG+AGG | 0.560629 | 8.1:-70607464 | MS.gene019557:CDS |
| GGTTGCTCAGGAAGATATCA+AGG | 0.563559 | 8.1:-70607328 | MS.gene019557:CDS |
| GTGATGGTGGTAAAGATGTA+GGG | 0.563894 | 8.1:-70607371 | MS.gene019557:CDS |
| GTTGCCGCAATCTCTGATGC+AGG | 0.564248 | 8.1:+70599709 | None:intergenic |
| TAATTTGAAAGGTTTGAATG+AGG | 0.565340 | 8.1:-70607802 | MS.gene019557:CDS |
| AAGAAGTAGCCCAACTCTGA+TGG | 0.565571 | 8.1:+70601990 | None:intergenic |
| AAGATGAAGCATCAAGAGCT+TGG | 0.565984 | 8.1:-70607575 | MS.gene019557:CDS |
| CTGTAAGTTCGGCCAGATGG+CGG | 0.566011 | 8.1:+70599668 | None:intergenic |
| ATGGCCCTTACGCCATGGCT+AGG | 0.567194 | 8.1:-70601664 | MS.gene019557:CDS |
| GAAACAGGCAGGCCTGTCCA+TGG | 0.568675 | 8.1:-70602505 | MS.gene019557:intron |
| TTCGGGGTCGATTTCTGGTG+CGG | 0.570404 | 8.1:-70607772 | MS.gene019557:CDS |
| CAGCATCACCAAAGTACACT+GGG | 0.572116 | 8.1:+70600792 | None:intergenic |
| GGAGTTTGGCTTAAGTGTCA+GGG | 0.574305 | 8.1:-70607870 | MS.gene019557:CDS |
| CACAAATAATGATATGATCA+CGG | 0.574543 | 8.1:+70601281 | None:intergenic |
| TTTCAATGGCCCTTACGCCA+TGG | 0.575214 | 8.1:-70601669 | MS.gene019557:CDS |
| GCGATTGCAAAGTAGAAAAG+AGG | 0.575556 | 8.1:-70607265 | MS.gene019557:CDS |
| TAGTTGAAGACTTGGTTCCA+AGG | 0.576304 | 8.1:+70600307 | None:intergenic |
| AAGAAGTTTCCACAAGTGCA+AGG | 0.578820 | 8.1:-70606089 | MS.gene019557:CDS |
| GCAATAACTCTAGACTCCCC+TGG | 0.579857 | 8.1:-70600645 | MS.gene019557:CDS |
| TGCGTCGATACCTGAACAAG+AGG | 0.580283 | 8.1:-70606016 | MS.gene019557:intron |
| ACCTAATTCTTCCAAAGGAG+GGG | 0.581808 | 8.1:-70603740 | MS.gene019557:intron |
| TCACCTAATTCTTCCAAAGG+AGG | 0.584193 | 8.1:-70603742 | MS.gene019557:CDS |
| CTTTGCAGCCTCAAGTTCAA+GGG | 0.584323 | 8.1:+70607128 | None:intergenic |
| GATAAGGTTCTACACAAAGT+CGG | 0.584810 | 8.1:-70600690 | MS.gene019557:intron |
| GACGACTCCCAAGTCCCTGA+AGG | 0.584852 | 8.1:-70599453 | MS.gene019557:CDS |
| AATGGCTCTTTCTTTAGCTG+AGG | 0.584884 | 8.1:-70607469 | MS.gene019557:CDS |
| GACAAATTTAGCGTGTTGTG+AGG | 0.586077 | 8.1:-70607298 | MS.gene019557:CDS |
| CTTACGCCATGGCTAGGCGA+AGG | 0.586449 | 8.1:-70601658 | MS.gene019557:CDS |
| ATCAAACTCATCTGTACTAG+AGG | 0.586794 | 8.1:+70606645 | None:intergenic |
| GAACAGCAAAGAGGACAACT+GGG | 0.587076 | 8.1:+70601705 | None:intergenic |
| CCAGCATCACCAAAGTACAC+TGG | 0.587183 | 8.1:+70600791 | None:intergenic |
| GGGCTACTTCTTGCTCCTGG+AGG | 0.587598 | 8.1:-70601979 | MS.gene019557:CDS |
| TTTACCACCATCACTCTCGT+TGG | 0.587719 | 8.1:+70607380 | None:intergenic |
| CACCTACCCTGGCTGTGAGA+AGG | 0.588217 | 8.1:+70602645 | None:intergenic |
| CAGCAGTTGATGATAATGCC+AGG | 0.590625 | 8.1:+70604563 | None:intergenic |
| ATTCAGCTATCTGAAACAAG+TGG | 0.592629 | 8.1:-70599543 | MS.gene019557:intron |
| AATGATGACTTGGGAGCAGA+TGG | 0.593644 | 8.1:+70606706 | None:intergenic |
| GACTGCCGCAGTGATTGGGT+TGG | 0.597814 | 8.1:-70604641 | MS.gene019557:CDS |
| TAGCCAGAGCATGTCAAAGA+GGG | 0.598184 | 8.1:+70605899 | None:intergenic |
| CCATTGAAATTCCGACAACA+AGG | 0.599510 | 8.1:+70601683 | None:intergenic |
| TTGTCGCACTAGATGTGCGA+AGG | 0.599606 | 8.1:-70601122 | MS.gene019557:intron |
| CTTATTACCTGTAGAAAGTG+AGG | 0.599858 | 8.1:-70601590 | MS.gene019557:intron |
| ACACAAAGTCGGGGCTGGAA+GGG | 0.602456 | 8.1:-70600679 | MS.gene019557:CDS |
| ACATTGGGACTCTTGATATG+TGG | 0.605276 | 8.1:-70602069 | MS.gene019557:CDS |
| TTACAGGTGTTACAGGAGAG+AGG | 0.605412 | 8.1:-70604114 | MS.gene019557:intron |
| AGCTGTTCAAAATGCAACAA+TGG | 0.605598 | 8.1:-70607487 | MS.gene019557:CDS |
| TCAGTTGACTGCTGTGAAAG+CGG | 0.606500 | 8.1:-70607196 | MS.gene019557:CDS |
| TGGTAAAGATGTAGGGCAAG+AGG | 0.609768 | 8.1:-70607364 | MS.gene019557:CDS |
| TCTGATATTGCTCCATATCG+TGG | 0.610625 | 8.1:-70602420 | MS.gene019557:CDS |
| TTATGATAGTTACCTCAGAA+AGG | 0.611342 | 8.1:+70600273 | None:intergenic |
| TCTACCAGTAGAAGATGTTG+TGG | 0.611997 | 8.1:-70607028 | MS.gene019557:CDS |
| ACTTCCTGCATCAGAGATTG+CGG | 0.612004 | 8.1:-70599713 | MS.gene019557:CDS |
| CAAGGTTCCAACGAGAGTGA+TGG | 0.618500 | 8.1:-70607387 | MS.gene019557:CDS |
| TCCTGAAGTTGTCTAACTAG+AGG | 0.620043 | 8.1:+70606066 | None:intergenic |
| ACGACTCCCAAGTCCCTGAA+GGG | 0.626637 | 8.1:-70599452 | MS.gene019557:CDS |
| CAGACCAAGAGCTTCAGCAA+TGG | 0.626899 | 8.1:+70603339 | None:intergenic |
| ATCACTGCCATAATTGCAGG+TGG | 0.630885 | 8.1:-70603292 | MS.gene019557:CDS |
| TAATGTTCTCAGTGAAAGAG+TGG | 0.632205 | 8.1:-70600837 | MS.gene019557:intron |
| CCCTGGTGCAAACTATAGAA+CGG | 0.634933 | 8.1:-70600628 | MS.gene019557:CDS |
| CCAATTTCTCCTCCTCGGGG+AGG | 0.635056 | 8.1:+70607004 | None:intergenic |
| GTTGACTGCTGTGAAAGCGG+AGG | 0.638546 | 8.1:-70607193 | MS.gene019557:CDS |
| GACCAGCCTTCTCACAGCCA+GGG | 0.638636 | 8.1:-70602651 | MS.gene019557:intron |
| GGTGAGAGCACATCACGACA+TGG | 0.640051 | 8.1:-70604093 | MS.gene019557:CDS |
| GAACCTTTGGGAGAAGTTGG+GGG | 0.641605 | 8.1:-70607741 | MS.gene019557:CDS |
| ATAGCCAGAGCATGTCAAAG+AGG | 0.644645 | 8.1:+70605898 | None:intergenic |
| TCTGCTTGTATATAGGTCGA+AGG | 0.648132 | 8.1:+70602732 | None:intergenic |
| GGTTCCAACGAGAGTGATGG+TGG | 0.651951 | 8.1:-70607384 | MS.gene019557:CDS |
| AGCCGCAGCAGTCCTTTCTG+AGG | 0.652174 | 8.1:-70600285 | MS.gene019557:intron |
| CTGCGTCTCTAGTGATTCTG+CGG | 0.656928 | 8.1:+70606909 | None:intergenic |
| GACAACAAGGAACAGCAAAG+AGG | 0.657121 | 8.1:+70601696 | None:intergenic |
| CATATGATAATGGAAATGGT+AGG | 0.661663 | 8.1:-70607833 | MS.gene019557:CDS |
| GAACCAATTTCTCCTCCTCG+GGG | 0.664560 | 8.1:+70607001 | None:intergenic |
| GCAAGAGGATAAAGAACGTG+TGG | 0.665712 | 8.1:-70607349 | MS.gene019557:CDS |
| GGAGATCTCGAGTCATCAAG+TGG | 0.666610 | 8.1:-70606949 | MS.gene019557:CDS |
| TCCCAATGACAATAGCAGCA+GGG | 0.671149 | 8.1:+70604590 | None:intergenic |
| AAGTAGCCCAACTCTGATGG+CGG | 0.671712 | 8.1:+70601993 | None:intergenic |
| TGGTGATGCTGGTAGTCGAG+AGG | 0.674565 | 8.1:-70600780 | MS.gene019557:intron |
| TACCTCAGAAAGGACTGCTG+CGG | 0.678613 | 8.1:+70600283 | None:intergenic |
| CCGTTCTATAGTTTGCACCA+GGG | 0.686664 | 8.1:+70600628 | None:intergenic |
| TGTTGTGGACCTCCCCGAGG+AGG | 0.693409 | 8.1:-70607013 | MS.gene019557:CDS |
| TAAGGTTCTACACAAAGTCG+GGG | 0.707260 | 8.1:-70600688 | MS.gene019557:intron |
| TTTATTGTAGGTTAGCGACG+AGG | 0.708965 | 8.1:-70605928 | MS.gene019557:intron |
| TGAATGAGGAGTCGAATTCG+GGG | 0.710618 | 8.1:-70607788 | MS.gene019557:CDS |
| CGTGTTGTGAGGCTGAGTTG+AGG | 0.717249 | 8.1:-70607287 | MS.gene019557:CDS |
| AGATGTTGTGGACCTCCCCG+AGG | 0.728565 | 8.1:-70607016 | MS.gene019557:CDS |
| CGCCACCAACCCAATCACTG+CGG | 0.731124 | 8.1:+70604636 | None:intergenic |
| TCTATGCCAACAGAGCAGAG+AGG | 0.749050 | 8.1:-70606158 | MS.gene019557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 70599443 | 70608072 | 70599443 | ID=MS.gene019557 |
| chr8.1 | mRNA | 70599443 | 70608072 | 70599443 | ID=MS.gene019557.t1;Parent=MS.gene019557 |
| chr8.1 | exon | 70606553 | 70608072 | 70606553 | ID=MS.gene019557.t1.exon1;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70606553 | 70608072 | 70606553 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70606017 | 70606188 | 70606017 | ID=MS.gene019557.t1.exon2;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70606017 | 70606188 | 70606017 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70605850 | 70605940 | 70605850 | ID=MS.gene019557.t1.exon3;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70605850 | 70605940 | 70605850 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70605211 | 70605347 | 70605211 | ID=MS.gene019557.t1.exon4;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70605211 | 70605347 | 70605211 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70605061 | 70605120 | 70605061 | ID=MS.gene019557.t1.exon5;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70605061 | 70605120 | 70605061 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70604552 | 70604671 | 70604552 | ID=MS.gene019557.t1.exon6;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70604552 | 70604671 | 70604552 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70604062 | 70604130 | 70604062 | ID=MS.gene019557.t1.exon7;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70604062 | 70604130 | 70604062 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70603741 | 70603806 | 70603741 | ID=MS.gene019557.t1.exon8;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70603741 | 70603806 | 70603741 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70603285 | 70603374 | 70603285 | ID=MS.gene019557.t1.exon9;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70603285 | 70603374 | 70603285 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70602652 | 70602756 | 70602652 | ID=MS.gene019557.t1.exon10;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70602652 | 70602756 | 70602652 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70602392 | 70602520 | 70602392 | ID=MS.gene019557.t1.exon11;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70602392 | 70602520 | 70602392 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70601939 | 70602148 | 70601939 | ID=MS.gene019557.t1.exon12;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70601939 | 70602148 | 70601939 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70601591 | 70601740 | 70601591 | ID=MS.gene019557.t1.exon13;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70601591 | 70601740 | 70601591 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70601261 | 70601314 | 70601261 | ID=MS.gene019557.t1.exon14;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70601261 | 70601314 | 70601261 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70601123 | 70601181 | 70601123 | ID=MS.gene019557.t1.exon15;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70601123 | 70601181 | 70601123 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70600781 | 70600847 | 70600781 | ID=MS.gene019557.t1.exon16;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70600781 | 70600847 | 70600781 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70600530 | 70600706 | 70600530 | ID=MS.gene019557.t1.exon17;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70600530 | 70600706 | 70600530 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70600286 | 70600342 | 70600286 | ID=MS.gene019557.t1.exon18;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70600286 | 70600342 | 70600286 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70599666 | 70599740 | 70599666 | ID=MS.gene019557.t1.exon19;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70599666 | 70599740 | 70599666 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| chr8.1 | exon | 70599443 | 70599559 | 70599443 | ID=MS.gene019557.t1.exon20;Parent=MS.gene019557.t1 |
| chr8.1 | CDS | 70599443 | 70599559 | 70599443 | ID=cds.MS.gene019557.t1;Parent=MS.gene019557.t1 |
| Gene Sequence |
| Protein sequence |
