AlfalfaGEDB | MS.gene025832

M. sativa cultivar XinJiangDaYe / MS.gene025832

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13637.9 PF13857.9 PF13962.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025832.t1	XP_013450650.1	99.6	546	2	0	1	546	1	546	5.90E-168	600.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025832.t1	Q6AWW5	58.8	527	199	6	31	546	5	524	3.1e-48	194.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025832.t1	A0A072U691	99.6	546	2	0	1	546	1	546	4.3e-168	600.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene001757	MS.gene025832	PPI
MS.gene003842	MS.gene025832	PPI
MS.gene010436	MS.gene025832	PPI
MS.gene019557	MS.gene025832	PPI
MS.gene023837	MS.gene025832	PPI
MS.gene025832	MS.gene88573	PPI
MS.gene025832	MS.gene27164	PPI
MS.gene025832	MS.gene45459	PPI
MS.gene026206	MS.gene025832	PPI
MS.gene029347	MS.gene025832	PPI

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025832.t1	MTR_7g117620	99.267	546	4	0	1	546	1	546	0.0	1115
MS.gene025832.t1	MTR_2g096190	56.848	533	208	6	32	546	16	544	0.0	568
MS.gene025832.t1	MTR_4g062100	56.038	530	220	7	30	546	17	546	0.0	547
MS.gene025832.t1	MTR_7g100390	54.598	522	222	7	36	546	3	520	0.0	523
MS.gene025832.t1	MTR_1g115575	45.604	546	254	7	31	546	61	593	4.04e-142	423
MS.gene025832.t1	MTR_1g032100	44.015	518	262	8	52	546	19	531	5.13e-136	405
MS.gene025832.t1	MTR_1g032100	32.778	180	116	3	48	227	96	270	3.44e-13	72.4
MS.gene025832.t1	MTR_8g105260	44.330	485	250	8	77	546	59	538	4.42e-129	387
MS.gene025832.t1	MTR_8g105260	32.222	180	117	3	48	227	103	277	4.78e-13	72.0
MS.gene025832.t1	MTR_7g100430	40.968	537	286	4	31	546	56	582	6.76e-117	358

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025832.t1	AT2G31820	74.234	555	133	5	1	546	109	662	0.0	825
MS.gene025832.t1	AT1G05640	71.199	559	148	6	1	546	69	627	0.0	793
MS.gene025832.t1	AT5G60070	56.711	529	208	8	35	546	24	548	0.0	558
MS.gene025832.t1	AT1G07710	57.170	530	212	5	31	546	15	543	0.0	548
MS.gene025832.t1	AT1G07710	57.170	530	212	5	31	546	15	543	0.0	548
MS.gene025832.t1	AT5G02620	50.287	523	242	6	35	546	9	524	1.48e-162	473
MS.gene025832.t1	AT5G02620	50.287	523	242	6	35	546	9	524	1.48e-162	473
MS.gene025832.t1	AT5G02620	50.287	523	242	6	35	546	9	524	1.48e-162	473
MS.gene025832.t1	AT5G02620	48.352	546	241	7	35	546	9	547	1.92e-157	461
MS.gene025832.t1	AT5G02620	48.352	546	241	7	35	546	9	547	1.92e-157	461

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

Find 134 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCAACAACAGTAGCAG+AGG	0.562112	7.1:+52536	None:intergenic
AAGAAGAGCAAGGAATCACC+TGG	0.548629	7.1:-56632	MS.gene025832:CDS
AAGGAATCACCTGGGAAACG+TGG	0.653514	7.1:-56623	MS.gene025832:CDS
AAGTGAGAGGAAGAAGAGCA+AGG	0.553626	7.1:-56642	MS.gene025832:CDS
ACAAGTCCTTTGCTGCCTCA+TGG	0.467607	7.1:+56531	None:intergenic
ACCGATTCATTTAGCTGCTC+GGG	0.450097	7.1:-56594	MS.gene025832:CDS
ACTCCAACAGACACGCCAGA+CGG	0.625293	7.1:-52628	MS.gene025832:CDS
AGAAGAGCAAGGAATCACCT+GGG	0.695083	7.1:-56631	MS.gene025832:CDS
AGACACGCCAGACGGGCATG+AGG	0.585010	7.1:-52620	MS.gene025832:CDS
AGATCTTGTCTCCATAATGA+GGG	0.621157	7.1:-52751	MS.gene025832:CDS

Showing 1 to 10 of 134 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCACAATGCAAGACA+AGG	+	chr7.1:55797-55816	None:intergenic	30.0%
AAAATCACAATGCAAGACAA+GGG	+	chr7.1:55796-55815	None:intergenic	30.0%
AAAATGAATAACAAAGAGGG+AGG	+	chr7.1:53980-53999	None:intergenic	30.0%
AAAATTACTCTCCACTATCT+TGG	+	chr7.1:55847-55866	None:intergenic	30.0%
AAATGAATAACAAAGAGGGA+GGG	+	chr7.1:53979-53998	None:intergenic	30.0%
AACGAAGTAGAAAACTATTG+TGG	+	chr7.1:55030-55049	None:intergenic	30.0%
ACAAAAAATATCAGGAAAGC+TGG	+	chr7.1:56352-56371	None:intergenic	30.0%
ACAAATTCAGAGTTCAGATT+TGG	+	chr7.1:55586-55605	None:intergenic	30.0%
ACGGTTATTGAAAAAACCAT+GGG	-	chr7.1:53510-53529	MS.gene025832:intron	30.0%
AGAAAAAAAGAATCTTGCAG+AGG	-	chr7.1:52486-52505	MS.gene025832:CDS	30.0%

Showing 1 to 10 of 372 entries

Previous1 2 3 4 5…38Next

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	52029	56750	52029	ID=MS.gene025832
chr7.1	mRNA	52029	56750	52029	ID=MS.gene025832.t1;Parent=MS.gene025832
chr7.1	exon	56363	56750	56363	ID=MS.gene025832.t1.exon1;Parent=MS.gene025832.t1
chr7.1	CDS	56363	56750	56363	ID=cds.MS.gene025832.t1;Parent=MS.gene025832.t1
chr7.1	exon	55864	56273	55864	ID=MS.gene025832.t1.exon2;Parent=MS.gene025832.t1
chr7.1	CDS	55864	56273	55864	ID=cds.MS.gene025832.t1;Parent=MS.gene025832.t1
chr7.1	exon	52029	52871	52029	ID=MS.gene025832.t1.exon3;Parent=MS.gene025832.t1
chr7.1	CDS	52029	52871	52029	ID=cds.MS.gene025832.t1;Parent=MS.gene025832.t1

Gene Sequence

>MS.gene025832

ATGGAAAAACAGAAGAGTTTTCGTGGATTCATGGAGAAACAGAGAAGTTTTCGCGTTGTCATGGAGAGGCAGCTGAGCTTCATGGGAAGTGAGAGGAAGAAGAGCAAGGAATCACCTGGGAAACGTGGCGACTTACCGATTCATTTAGCTGCTCGGGCTGGGAACTTGACTAGAGTCAAAGAGATACTACTTCAAAACCATGAGGCAGCAAAGGACTTGTTGGCAAAGCAGAACCTCGAGGGGGAGACCCCTCTTTACGTCGCTTCTGAGAACGGACATGATTTGGTTGTTAGCGAGATACTCAAATACTTGGACTTGCAAACTGCTTCTATTGTCGCCAGAAATGGTTATGATCCCTTCCATGTTGCTGCAAAGCAGGGTCATCTTGGTAAGTAAGTTTCAGATCATGTTTGTGTTCTTTTCACAAATGTACCATGTCTCACTATAACTCTGACCGAGAAAAAAAGAATCTTGCAGAGGTGCTGAGAGAACTGCTGCACTCTTTTCCCAACTTGGCCATGACTACAGATTTGTCCAATTCAACTGCTTTACACACAGCTGCTACCCAAGGTCACATTGACGTCGTGAATCTCCTTTTGGAATCAGATTCAAACCTTGCAAAAATAGCCAGGAACAATGGTAAGACTGTCCTTCACTCTGCGGCTAGAATGGGGCATTTGGAAGTTGTGAAAGCCTTACTAAGCAAGGATCCAAGCACCGGATTTAGGACTGATAAGAAAGGTCAAACTGCACTACACATGGCTGTGAAAGGGCAAAATGAAGAAATTTTGCTGGAATTGGTGAAACCTGACCGAGCAGTTTTAAATCTAGAGGATAATAAAGGAAATACAGCATTGCATATTGCTGCAAAGAAGGGCCGTAATCAGGTGTTTGCTTTTACTTTTATAATTATTATTCATTGTATATAAAACTTATTTTCTTATCAGCCTTTATAAACTAATTATTGAGATATTCTTTATTTTTGTTTAGCGACGAACATGCATCCATGTCTAATACTTGTTCTTATGATTCAAAGTTGACAGAAAAAGATTCACACAAAAATAACCACGTAATCCTAAAATATAAGCATAACTGTAAGTCATATTATGGCTTGTTTGCACACTGGTAGTTTACAATGTAGAAAAGATGGTGGAGTGACAGATAAATAGACACATACCTAGTAGAAAATGAACGAGAAGCAGAGAATTAAATAACCACCCAATGATCAATTGTAGGTGAACATGAATGGCTTTTCAATTGCTGGTTTCACAAAATTAAATAACCACCCAATGATCAATGGGTTTTTTAGATTTCCCGAACCTGAAAGTCAGATCCTCTTCTGCAGGTTTAGGCATGTCCCATGTAAGAAACCCATAATTTCCTTTGCCATCTGGAATCAATAGAACAATTTGGGACCATCATGTGCAGTATTTTCTATTTAGTCGTGGACCATCTACTTGGAGTGGATTGGAAAAACCATCACGGTTATTGAAAAAACCATGGGAGTTATTTGAGCTTGTTTGTTGCCTGTGCCGCCGGGTGTGCTTAGTTGTTATGTCTATAATAATGTCTTCGGCTCCGTGTTGGTACTATTGGCAGCGCCTATGATAGGAACCCCATTAGATAGAAATCAGACTGATATTAAAGGATTAAGAAGTGCTTGTACAGGGATTTCACTTTAACAAGCGGAAGAAACAACTATATAGAAGAAGGAATGGCAATGGTTGGGGGTAAGCACCTTACATGATGGATAGAGTAAAATACTGAAGCAAGACATTCCCTATTCTGAGAGAAAGCCGACCTCGCTTCTCAGAGCCAATACCCCGAGCCCAAATGCTAATTTCTCACATGCCTTTTACGGTTACCACTTACCCTTCCCCCTATATATTTCTCTTATGTTATTCCCCTTATCTCTCTTCTTCGCTCATCCCACACGTTCCTCTCCTCCCCTCCCTCTTTGTTATTCATTTTGTTCTCAAGTTAAAAGAAATGCACAACTGTATGTCCACCGGGGTCCATAGCTTGAAGCATGATGACCGAGCTGTGCACGAAACATAAGAATTTTAACTTGGGTTGAATTATCTGTCCTTGGGGTTATTTTCAACTAAAAAATATATTGTTTTCTTCTCCATTATTGCTATATGAAAATATAGTCCCTGCTCCAAGGCTATCTGAAGACAGGCTGAATGTTATTTAATTTTGCAAAGAGATACCAAAAGTGCACACAATTTAGGGTGAGGACGACAATCGGGTTGCTTTTTGTTATCCTGGTATCTCGATTAGCATGATGTTACTTGTGATGCTTCAGTTGTGCTCAATTTTAGCTACGTCAGTAAAAACTACTTGCCTATGGAAGTATGTGCATACTAAGAGTAGAAGAGCATCTCACTGAAAATTGTGCTGTTTGAAAATAGAACTTAGTTTGATCTATGAAGTAGTGCCACAAAATGTGCATGAATACGAACACAGAGACAAGGACAAACTCAATACAGGACATTGACACACACACAGATATATATATATATATATATATATATATATATATATATCGTAGGAAATTGAATAATTACATTATAATTCGTTTTATCTTAGGAAATTGTGTCTGCTTAGTTACTCATCGTATAAATTGCATTCATATTTATTTTGGTGTGTGTGATTTTACTGAGTATATTTATTCACAAAAACGTACTTTAAAGCTACTCTTCTCATTTCATTTTTTCACTTTTAAGTTGGTATTAGAGCAGAGTTTGATCATTCACTTCTATTGTGTACTTCAGCCTCCATCAAGTCTGGACTTTGTCTGAATCTCCTCCTGTCATGGTAAATCTCAGCTGTATCTTCTTTCTGGCCATTGTTAATATACTTTTTTGGTAATTGTCAGTCCGTTTTCCAGTCACCATCCTCGACTATTGAATTTTCAACCAAAAAGACCACCCTTAGGTTCACCTCTTCCTACTTGGCTGTAACACGATGTTTGATCAGTTGAAAGCGTGTCTCACCACAATAGTTTTCTACTTCGTTAGCTACGTGAAAGTCACACATTACCGGCCTGTCTTCAGATTTTAGTTGCGCCTCTTTGGAACTGCTCGTGAGCCTCTCCTAAGTCTTTTTTTTTTTTTGGCACATCACCATTTATCTCTGGTTTGAGTAGTAGGTATAAGTTCCTTGGATGCCATCACTTTTTTTGTTCATGTAGCTTGCTGTTTCAGTCTATTTTCTTTCTTATGGCATTAATTGGTTAAGAGTAATAAAAGCTCCGATCTTATTTGGTTTCTCTAGAGAGCCATCAATTCCCATGAAAAACATTAATGAATCCTTAATCGGTATTCTTTTGAAGTTTGATTTCTTGGTTAAGGACCATATGAATTATGATAATTTGATAACCTAAGTTGAAAATAGTGATGCTTCATGTGAACGTGAAAAAGTTGATTATTAGTTAGTATCCTCCTTACTTTGGCAATGTATTTCCACATCATTTTTTGTTCTTTTAATTAACCAGGTCTGTTTCTCTCTTATTAGCTTTGTACAGTCTGGTTTGTTTTGGTTCTGCAGTACCAAATCTGAACTCTGAATTTGTGAGAGGGATACTCACCTCCTGCAGATTATTTCTCCTTTGCTTACTTATTAATTCATTATTTATTGTTGGCTGCATTCTTTTGATGGCACACATTTAAATGATAGTTGACTGTTAACATGAAAAATACTGTAGCTTCAGTAAATTAAGAATCCCCACCAATCAGCCTGAAAAACAACCCATACTGAACCCCTTGTCTTGCATTGTGATTTTTATTTTTTTTAGAAAGATAAAGTTGATACCAAGATAGTGGAGAGTAATTTTGCTTTCAATATTTATTCTGAAGTGGTCATTATTAACAACAGAATGTCCGCCGCTTGTTATCAACGGAGGGTATTAACATCAATGCTACTAATAAGGCGGGAGAGACTCCCCTTGACATTGCAGAAAAATTTGGTAGTCCAGATCTTGTCTCCATAATGAGGGATGCTGGGGCTGTTAATTCCACCGACCAAGGGAAACCTCCAAATGCAGCAAAGCAACTAAAGCAGACTGTCAGCGACATAAAGCATGATGTGCAATCCCAACTCCAACAGACACGCCAGACGGGCATGAGGGTCCAGAAAATCGCTAAGAAGCTGAAGAAACTCCACATAAGTGGCCTGAACAATGCGATTACCTCTGCTACTGTTGTTGCTGTTCTCATTGCTACAGTTGCTTTTGCAGCCATCTTCACTGTCCCCGGTCAATATGTTGAAGAGAAAGTAAATGGCTTTTCACTTGGACAAGCAACTATAGCGAACAATCCAGCTTTCCTGATATTTTTTGTGTTTGATAGCCTGGCATTATTCATTTCTTTGGCTGTCGTGGTGGTTCAAACTTCAGTTGTTGTGATTGAGCAAAAGGCAAAGAAGCAGCTTGTTTTTGTCATTAACAAGCTCATGTGGCTGGCTTGCCTTTTCATTTCCATTGCCTTCATTTCTCTCACTTACGTGGTAGTGGGATCACACTCACGATGGCTTGCTATATATGCTACAGTGATTGGAAGCTTGATAATGCTCTCTACAATCGGTTCCATGTGCTATTGTGTCATTCTGCATAGGATAGATGAGACAAAATTGAGGGCCGAAAGCCGTTCTTTCTCCATGTCGCATACATCAGACCAGGAGATTTTGAACGGTGAATACAAGAGGATGTACGCACTTTAG

Protein sequence

>MS.gene025832.t1

MEKQKSFRGFMEKQRSFRVVMERQLSFMGSERKKSKESPGKRGDLPIHLAARAGNLTRVKEILLQNHEAAKDLLAKQNLEGETPLYVASENGHDLVVSEILKYLDLQTASIVARNGYDPFHVAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLSKDPSTGFRTDKKGQTALHMAVKGQNEEILLELVKPDRAVLNLEDNKGNTALHIAAKKGRNQNVRRLLSTEGININATNKAGETPLDIAEKFGSPDLVSIMRDAGAVNSTDQGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAITSATVVAVLIATVAFAAIFTVPGQYVEEKVNGFSLGQATIANNPAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWLACLFISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRIDETKLRAESRSFSMSHTSDQEILNGEYKRMYAL