Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52206.t1 | XP_003623890.3 | 96.6 | 1194 | 39 | 1 | 1 | 1194 | 1 | 1193 | 0.00E+00 | 1884.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52206.t1 | O65272 | 66.8 | 1158 | 338 | 12 | 48 | 1194 | 53 | 1174 | 0.0e+00 | 1218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52206.t1 | A0A396H596 | 96.6 | 1194 | 39 | 1 | 1 | 1194 | 1 | 1193 | 0.0e+00 | 1884.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52206 | MS.gene001757 | PPI |
| MS.gene52206 | MS.gene050727 | PPI |
| MS.gene52206 | MS.gene019557 | PPI |
| MS.gene52206 | MS.gene27690 | PPI |
| MS.gene52206 | MS.gene056723 | PPI |
| MS.gene024366 | MS.gene52206 | PPI |
| MS.gene52206 | MS.gene069261 | PPI |
| MS.gene52206 | MS.gene025832 | PPI |
| MS.gene52206 | MS.gene22770 | PPI |
| MS.gene52206 | MS.gene023837 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52206.t1 | MTR_8g031550 | 71.723 | 1213 | 279 | 12 | 3 | 1191 | 1 | 1173 | 0.0 | 1590 |
| MS.gene52206.t1 | MTR_8g031550 | 72.000 | 1175 | 267 | 11 | 3 | 1153 | 1 | 1137 | 0.0 | 1542 |
| MS.gene52206.t1 | MTR_7g076700 | 99.186 | 614 | 5 | 0 | 581 | 1194 | 1 | 614 | 0.0 | 1216 |
| MS.gene52206.t1 | MTR_4g092790 | 36.943 | 628 | 347 | 12 | 589 | 1181 | 110 | 723 | 1.11e-91 | 313 |
| MS.gene52206.t1 | MTR_4g092790 | 38.418 | 531 | 284 | 10 | 590 | 1086 | 111 | 632 | 2.21e-79 | 275 |
| MS.gene52206.t1 | MTR_1g016450 | 29.917 | 361 | 236 | 6 | 611 | 964 | 189 | 539 | 1.01e-37 | 151 |
| MS.gene52206.t1 | MTR_0050s0160 | 30.748 | 361 | 233 | 5 | 611 | 964 | 181 | 531 | 2.74e-37 | 149 |
| MS.gene52206.t1 | MTR_8g101640 | 28.532 | 361 | 244 | 6 | 611 | 964 | 187 | 540 | 1.40e-29 | 126 |
| MS.gene52206.t1 | MTR_8g101640 | 28.532 | 361 | 244 | 6 | 611 | 964 | 187 | 540 | 1.53e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52206.t1 | AT4G00630 | 66.255 | 1215 | 346 | 21 | 3 | 1194 | 1 | 1174 | 0.0 | 1407 |
| MS.gene52206.t1 | AT4G00630 | 65.661 | 1226 | 346 | 22 | 3 | 1194 | 1 | 1185 | 0.0 | 1400 |
| MS.gene52206.t1 | AT1G01790 | 65.826 | 1229 | 346 | 17 | 3 | 1194 | 1 | 1192 | 0.0 | 1355 |
| MS.gene52206.t1 | AT1G01790 | 65.826 | 1229 | 346 | 17 | 3 | 1194 | 1 | 1192 | 0.0 | 1355 |
| MS.gene52206.t1 | AT4G04850 | 38.160 | 587 | 320 | 10 | 589 | 1143 | 106 | 681 | 1.44e-102 | 343 |
| MS.gene52206.t1 | AT4G04850 | 38.679 | 530 | 282 | 10 | 589 | 1086 | 106 | 624 | 1.66e-90 | 305 |
| MS.gene52206.t1 | AT5G51710 | 29.953 | 424 | 245 | 8 | 595 | 992 | 154 | 551 | 1.23e-41 | 162 |
| MS.gene52206.t1 | AT5G51710 | 30.303 | 429 | 245 | 9 | 595 | 995 | 154 | 556 | 1.30e-41 | 162 |
| MS.gene52206.t1 | AT5G11800 | 31.653 | 357 | 231 | 7 | 611 | 962 | 199 | 547 | 3.71e-36 | 146 |
| MS.gene52206.t1 | AT2G19600 | 31.933 | 357 | 234 | 5 | 611 | 964 | 191 | 541 | 3.55e-35 | 143 |
Find 241 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGCATTTGTGGCTTT+TGG | 0.149379 | 7.4:+28996927 | MS.gene52206:CDS |
| ACACTTCAACCAAATCTTTC+TGG | 0.160957 | 7.4:-28985875 | None:intergenic |
| CATATCATTATTTGTGGATT+TGG | 0.195132 | 7.4:+28997657 | MS.gene52206:CDS |
| TTGGCAACTGCTGGAGTTAT+TGG | 0.211575 | 7.4:+28989651 | MS.gene52206:CDS |
| GTGTTGGTTCTTCCAAAATT+TGG | 0.213838 | 7.4:-28986881 | None:intergenic |
| CAATCGTCCACCTGCAATTA+TGG | 0.226201 | 7.4:-28993492 | None:intergenic |
| TCCATATCGTGGCCTTCTTT+TGG | 0.230442 | 7.4:+28995562 | MS.gene52206:CDS |
| TCTTTGATGGGTAGAGTCTT+TGG | 0.245465 | 7.4:+28996852 | MS.gene52206:CDS |
| GGTATCTTGATTGGGCCTTA+TGG | 0.254328 | 7.4:+28989266 | MS.gene52206:CDS |
| CCAGGCCAATATTAAATAAA+AGG | 0.258799 | 7.4:-28989349 | None:intergenic |
| CAGTTTCCCAAGCTAGTTCT+TGG | 0.259613 | 7.4:+28987119 | MS.gene52206:CDS |
| ACAAAAGCAATAGCTGAATT+TGG | 0.267120 | 7.4:+28989317 | MS.gene52206:CDS |
| AGTTCTTGGATTATTGTTAA+TGG | 0.271447 | 7.4:+28987133 | MS.gene52206:CDS |
| TTGGCTGCTGGTATCTTGAT+TGG | 0.275019 | 7.4:+28989257 | MS.gene52206:CDS |
| GAGAAGGTTGAGAAGGAAAT+AGG | 0.276482 | 7.4:+28986030 | MS.gene52206:CDS |
| AATACACTTCTTGTTATTCT+TGG | 0.278059 | 7.4:+28994724 | MS.gene52206:CDS |
| TAAGAATGAGAAACTTCTTA+TGG | 0.295559 | 7.4:+28985849 | MS.gene52206:CDS |
| CTTTCTTCAGGCGAAACTTC+CGG | 0.307009 | 7.4:+28999409 | MS.gene52206:intron |
| CTTTGATGGGTAGAGTCTTT+GGG | 0.307122 | 7.4:+28996853 | MS.gene52206:CDS |
| CGAACAAAAGTCTTCACATT+TGG | 0.307142 | 7.4:-28998586 | None:intergenic |
| AGTGGAAGTTCTCTTGGTTA+TGG | 0.312057 | 7.4:+28999863 | MS.gene52206:CDS |
| TCTGCGACTTGCTTGTATAT+TGG | 0.312717 | 7.4:-28994673 | None:intergenic |
| ACCCCTCCTTTGGAAGAATT+AGG | 0.314345 | 7.4:-28993207 | None:intergenic |
| GTGGACTCAGCCTCCTCTTC+AGG | 0.317442 | 7.4:-28987053 | None:intergenic |
| TAGTCCTGTTCTTGGCTACT+TGG | 0.324259 | 7.4:+28989238 | MS.gene52206:CDS |
| TTAGCTTATGTTAACGGAAA+TGG | 0.324758 | 7.4:+28985913 | MS.gene52206:CDS |
| GACTTTAGAAGGAGAGGTTT+TGG | 0.325536 | 7.4:+28985697 | MS.gene52206:CDS |
| TGACTTCTTCAATAATGCTT+TGG | 0.328070 | 7.4:-28986997 | None:intergenic |
| GACTTCTTCAATAATGCTTT+GGG | 0.328255 | 7.4:-28986996 | None:intergenic |
| TTCTTTGTTGTTTCTTGTTG+TGG | 0.330182 | 7.4:+28997323 | MS.gene52206:CDS |
| GTTCTTGGATTATTGTTAAT+GGG | 0.333446 | 7.4:+28987134 | MS.gene52206:CDS |
| GATTCTTTAGCTTATGTTAA+CGG | 0.335110 | 7.4:+28985907 | MS.gene52206:CDS |
| TGCTACCTCAAGCTCTTTCA+AGG | 0.336432 | 7.4:-28986100 | None:intergenic |
| TCTTTGTTGTTTCTTGTTGT+GGG | 0.341117 | 7.4:+28997324 | MS.gene52206:CDS |
| ATACACTTCTTGTTATTCTT+GGG | 0.342397 | 7.4:+28994725 | MS.gene52206:CDS |
| TGCATCTGAAGATTGAGATT+TGG | 0.350701 | 7.4:-28999909 | None:intergenic |
| TTATGGGATCCAGAAAGATT+TGG | 0.351056 | 7.4:+28985866 | MS.gene52206:CDS |
| CAAGATCATATCATTATTTG+TGG | 0.351617 | 7.4:+28997651 | MS.gene52206:CDS |
| TGTTTAGGTAGTCCTGTTCT+TGG | 0.351821 | 7.4:+28989230 | MS.gene52206:intron |
| TGCTACAATGGCTCTTTCAT+TGG | 0.353395 | 7.4:+28986287 | MS.gene52206:CDS |
| GAGGCGCTTGCAAAATAAAA+AGG | 0.354322 | 7.4:+28986485 | MS.gene52206:CDS |
| AGACTTGGCTCCAAGGTCTC+TGG | 0.356989 | 7.4:-28998836 | None:intergenic |
| TGGTGGAGAATTTGCATTTG+TGG | 0.363924 | 7.4:+28996920 | MS.gene52206:CDS |
| GAGCAAATTATAGAACAGTT+TGG | 0.365094 | 7.4:+28998545 | MS.gene52206:CDS |
| TAGTACTATGTTTGAAGAAA+AGG | 0.366180 | 7.4:+28986131 | MS.gene52206:CDS |
| GAACAAAAGTCTTCACATTT+GGG | 0.368140 | 7.4:-28998585 | None:intergenic |
| GCCATTACTGCCATAATTGC+AGG | 0.370794 | 7.4:+28993482 | MS.gene52206:CDS |
| CATTATATCTGTGGCCTACC+TGG | 0.371383 | 7.4:+28989684 | MS.gene52206:CDS |
| AATAATGCTTTGGGAGCTAA+TGG | 0.373217 | 7.4:-28986987 | None:intergenic |
| TCTCGGACTGGCTGCTGTTA+AGG | 0.374121 | 7.4:+28993451 | MS.gene52206:CDS |
| GGCCCTGCTGCTATAGTTAT+CGG | 0.380713 | 7.4:+28989705 | MS.gene52206:CDS |
| AAAGATTTGGTTGAAGTGTC+AGG | 0.389359 | 7.4:+28985879 | MS.gene52206:CDS |
| CTTCTTCTTTACAGCTCCTT+CGG | 0.393799 | 7.4:+28994650 | MS.gene52206:intron |
| ACCTGTAGCTGGTGTTGAAT+TGG | 0.394638 | 7.4:+28985984 | MS.gene52206:CDS |
| TGGCTGCTGGTATCTTGATT+GGG | 0.396536 | 7.4:+28989258 | MS.gene52206:CDS |
| GGTAGCTATAGAGTCTTTAG+AGG | 0.396676 | 7.4:+28986326 | MS.gene52206:CDS |
| AGCAAATTATAGAACAGTTT+GGG | 0.398095 | 7.4:+28998546 | MS.gene52206:CDS |
| GCCAATGTCCCCATGACGAC+TGG | 0.404282 | 7.4:-28996798 | None:intergenic |
| GTTGATTATGTGGAAGGTTC+AGG | 0.404663 | 7.4:+28985943 | MS.gene52206:CDS |
| AATTGCTGAAAAGGCACAAC+TGG | 0.405943 | 7.4:+28986542 | MS.gene52206:CDS |
| AAGGTTCAGGTGAGGATGTA+GGG | 0.408442 | 7.4:+28985956 | MS.gene52206:CDS |
| TCTTGTTGTGGGCATTTCAA+TGG | 0.410241 | 7.4:+28997335 | MS.gene52206:CDS |
| GCTGGACTTCTTCTTGCTCC+TGG | 0.411130 | 7.4:+28996900 | MS.gene52206:CDS |
| CCTCCCTCTTTGACATGCTC+TGG | 0.411924 | 7.4:+28987717 | MS.gene52206:CDS |
| GGATTATTGTTAATGGGAGC+AGG | 0.413281 | 7.4:+28987140 | MS.gene52206:CDS |
| GTCATTTCTGCTTTAAGAGC+TGG | 0.413578 | 7.4:+28996882 | MS.gene52206:CDS |
| ATCCACCGCCGTTGTTCTGC+AGG | 0.414589 | 7.4:+28989746 | MS.gene52206:CDS |
| AGGGGAAGAAGAAGGAGAGA+AGG | 0.414702 | 7.4:+28986014 | MS.gene52206:CDS |
| GACTCTCTTAGTTTCTTTGA+TGG | 0.415031 | 7.4:+28996839 | MS.gene52206:CDS |
| AAGAATAACAAGAAGTGTAT+TGG | 0.418951 | 7.4:-28994722 | None:intergenic |
| CCCAAAAGAAGGCCACGATA+TGG | 0.419008 | 7.4:-28995563 | None:intergenic |
| ATTGCAAGAAATTGCTGAAA+AGG | 0.419210 | 7.4:+28986533 | MS.gene52206:CDS |
| GACTTGGCTCCAAGGTCTCT+GGG | 0.419507 | 7.4:-28998835 | None:intergenic |
| CGCATGAACATTACGAATGA+TGG | 0.420208 | 7.4:-28989294 | None:intergenic |
| CCAGTGTCCCTTCAGAGACT+TGG | 0.421950 | 7.4:-28999949 | None:intergenic |
| CTCGATCTCCCTGTGTACTT+TGG | 0.424274 | 7.4:+28998370 | MS.gene52206:CDS |
| CGCAATTTGTCAAATTATCC+TGG | 0.425462 | 7.4:-28986452 | None:intergenic |
| GTAGGGGTGGTACCTGTAGC+TGG | 0.426221 | 7.4:+28985973 | MS.gene52206:CDS |
| CAAGCCATTGCTGAAGCTCT+CGG | 0.427684 | 7.4:+28993434 | MS.gene52206:CDS |
| GGCAGGACTTTCCATGGCAT+TGG | 0.428354 | 7.4:+28995472 | MS.gene52206:intron |
| GAAACAACAAAGAAGACAGC+TGG | 0.438265 | 7.4:-28997314 | None:intergenic |
| GTTCTTGGCTACTTGGCTGC+TGG | 0.438283 | 7.4:+28989245 | MS.gene52206:CDS |
| AACATCATTCTGCTCGAAAC+GGG | 0.438877 | 7.4:-28997400 | None:intergenic |
| AAGAATGAGAAACTTCTTAT+GGG | 0.440591 | 7.4:+28985850 | MS.gene52206:CDS |
| GAAGGTTCAGGTGAGGATGT+AGG | 0.441367 | 7.4:+28985955 | MS.gene52206:CDS |
| ATTAACATCATTCAAAGATC+GGG | 0.444442 | 7.4:-28986199 | None:intergenic |
| GGAGGCGTGGGGACTAGTTA+TGG | 0.445647 | 7.4:+28985643 | MS.gene52206:CDS |
| AGCAGCTGCTGTGCTTGCTC+AGG | 0.445833 | 7.4:+28998865 | MS.gene52206:CDS |
| AGAAATATGAATATGGATAT+AGG | 0.447021 | 7.4:+28985589 | None:intergenic |
| AAATGCTCAGCTCCTTCAAC+CGG | 0.451828 | 7.4:+28987474 | MS.gene52206:CDS |
| TGCTGGAGTTATTGGCTTGG+TGG | 0.453914 | 7.4:+28989659 | MS.gene52206:CDS |
| ACTAGGTCCTTCATAAGATC+GGG | 0.454946 | 7.4:+28998479 | MS.gene52206:intron |
| AATATCAGATTCAACCTGTA+AGG | 0.458853 | 7.4:-28995537 | None:intergenic |
| CAATAATCCAAGAACTAGCT+TGG | 0.461542 | 7.4:-28987126 | None:intergenic |
| GCAGGACTTTCCATGGCATT+GGG | 0.463762 | 7.4:+28995473 | MS.gene52206:CDS |
| GCAGCCAAGTAGCCAAGAAC+AGG | 0.464694 | 7.4:-28989242 | None:intergenic |
| CCTGTGTACTTTGGAGATGC+TGG | 0.465387 | 7.4:+28998379 | MS.gene52206:CDS |
| TATAGTTATCGGGAATGGTC+TGG | 0.468530 | 7.4:+28989716 | MS.gene52206:CDS |
| ATTGGCCGAGGCAAAACTTC+AGG | 0.472501 | 7.4:+28986305 | MS.gene52206:CDS |
| AATTAACATCATTCAAAGAT+CGG | 0.475786 | 7.4:-28986200 | None:intergenic |
| TTCCCGATAACTATAGCAGC+AGG | 0.476644 | 7.4:-28989708 | None:intergenic |
| GAAGAATTAGGTGAAATAAG+AGG | 0.477526 | 7.4:-28993195 | None:intergenic |
| TAATGACATCTGCCGGTTGA+AGG | 0.481099 | 7.4:-28987486 | None:intergenic |
| TTGCAGGTGTTGCAGGAAAG+AGG | 0.481699 | 7.4:+28991905 | MS.gene52206:intron |
| TAACATCATTCTGCTCGAAA+CGG | 0.484281 | 7.4:-28997401 | None:intergenic |
| ATCACTCCATGGCTAGCTGC+AGG | 0.485272 | 7.4:+28997360 | MS.gene52206:CDS |
| ATTGAAAGAACTATTGCAAA+AGG | 0.485864 | 7.4:+28986077 | MS.gene52206:CDS |
| CGATAAGGACTTGACAGAAA+AGG | 0.486725 | 7.4:+28986389 | MS.gene52206:CDS |
| CACCTAATTCTTCCAAAGGA+GGG | 0.488132 | 7.4:+28993205 | MS.gene52206:CDS |
| TCAAACTTCCCAGTCGTCAT+GGG | 0.488271 | 7.4:+28996789 | MS.gene52206:CDS |
| CAGTGTCCCTTCAGAGACTT+GGG | 0.488711 | 7.4:-28999948 | None:intergenic |
| AACTGCTGGAGTTATTGGCT+TGG | 0.489063 | 7.4:+28989656 | MS.gene52206:CDS |
| AGAAGGAGAGAAGGTTGAGA+AGG | 0.489078 | 7.4:+28986023 | MS.gene52206:CDS |
| AATAATCCAAGAACTAGCTT+GGG | 0.489205 | 7.4:-28987125 | None:intergenic |
| TGGATTTGGACGAGTTGGCC+AGG | 0.489866 | 7.4:+28997671 | MS.gene52206:CDS |
| ACCTGCAATTATGGCAGTAA+TGG | 0.491844 | 7.4:-28993483 | None:intergenic |
| TTTGGAAGAACCAACACAGT+TGG | 0.494222 | 7.4:+28986887 | MS.gene52206:CDS |
| TGAGAAGGAAATAGGAGTAG+TGG | 0.495316 | 7.4:+28986038 | MS.gene52206:CDS |
| GAATATTACCGCAGTAGCTC+CGG | 0.495343 | 7.4:-28998647 | None:intergenic |
| TTGTGTTTCAGGTGGTAACT+TGG | 0.496119 | 7.4:-28986844 | None:intergenic |
| GAAGCAAGTGGAAGTTCTCT+TGG | 0.496230 | 7.4:+28999857 | MS.gene52206:CDS |
| GCAGGTGGTCCCAGAGACCT+TGG | 0.498309 | 7.4:+28998826 | MS.gene52206:intron |
| GCCCTGCTGCTATAGTTATC+GGG | 0.500456 | 7.4:+28989706 | MS.gene52206:CDS |
| TTTCAGCCCCGATCTTATGA+AGG | 0.502701 | 7.4:-28998486 | None:intergenic |
| TTCATAAGATCGGGGCTGAA+AGG | 0.503107 | 7.4:+28998488 | MS.gene52206:CDS |
| TGGCCTCCTGCAGCTAGCCA+TGG | 0.503209 | 7.4:-28997366 | None:intergenic |
| TCATGGAGTGAATTTAGAAA+AGG | 0.504553 | 7.4:+28998624 | MS.gene52206:CDS |
| CACTCCATGATCAACGTCAT+GGG | 0.504815 | 7.4:-28998611 | None:intergenic |
| TAATGAGAGTGATGGCGATA+AGG | 0.505182 | 7.4:+28986374 | MS.gene52206:CDS |
| ACCTAATTCTTCCAAAGGAG+GGG | 0.507007 | 7.4:+28993206 | MS.gene52206:CDS |
| AGCTGTTGCGTTTGAACTTG+AGG | 0.509280 | 7.4:+28986617 | MS.gene52206:CDS |
| ATTTGTGGATTTGGACGAGT+TGG | 0.510352 | 7.4:+28997666 | MS.gene52206:CDS |
| CTTATATAATCCAACTGTGT+TGG | 0.510738 | 7.4:-28986897 | None:intergenic |
| GACTAGGTCCTTCATAAGAT+CGG | 0.511146 | 7.4:+28998478 | MS.gene52206:intron |
| TACCCTGGCGGTCAAAAGAC+TGG | 0.511813 | 7.4:-28994749 | None:intergenic |
| TATATAAGTGATAATGAGAA+TGG | 0.512028 | 7.4:+28986912 | MS.gene52206:CDS |
| ACTCTCTTAGTTTCTTTGAT+GGG | 0.512450 | 7.4:+28996840 | MS.gene52206:CDS |
| GGACTTCTTCTTGCTCCTGG+TGG | 0.513266 | 7.4:+28996903 | MS.gene52206:CDS |
| CGCGCCCATGACGTTGATCA+TGG | 0.514688 | 7.4:+28998607 | MS.gene52206:CDS |
| GGAAAAGAAAAGAACGATGC+AGG | 0.515202 | 7.4:-28987032 | None:intergenic |
| AAGGTTGAGAAATATGAATA+TGG | 0.515798 | 7.4:+28985582 | None:intergenic |
| CTCACATCTAGTGCAACAAA+TGG | 0.516548 | 7.4:-28997799 | None:intergenic |
| TCCAATTCAACACCAGCTAC+AGG | 0.517624 | 7.4:-28985985 | None:intergenic |
| TTCAAACTTCCCAGTCGTCA+TGG | 0.519389 | 7.4:+28996788 | MS.gene52206:CDS |
| AGAAGAAAGTTCTTCAGCAC+TGG | 0.522369 | 7.4:-28987512 | None:intergenic |
| GTCGTTGAAATCTCTGATGC+CGG | 0.525459 | 7.4:-28999428 | None:intergenic |
| GGCGAGAGCACATCACGGCA+TGG | 0.529254 | 7.4:+28991926 | MS.gene52206:CDS |
| TAAAGAAGAGTCCCAAAAGA+AGG | 0.530828 | 7.4:-28995574 | None:intergenic |
| ATATTTATCCCAGGTGAATG+AGG | 0.531961 | 7.4:+28987688 | MS.gene52206:intron |
| TCATAAGATCGGGGCTGAAA+GGG | 0.533221 | 7.4:+28998489 | MS.gene52206:CDS |
| CCAAGTCTCTGAAGGGACAC+TGG | 0.533633 | 7.4:+28999949 | MS.gene52206:CDS |
| CATTGCTGAAGCTCTCGGAC+TGG | 0.534094 | 7.4:+28993439 | MS.gene52206:CDS |
| GCAGCTGCTAGTTGAAGACT+TGG | 0.534379 | 7.4:-28998851 | None:intergenic |
| CGAAACGGGAAGCAATCAGC+TGG | 0.535107 | 7.4:-28997386 | None:intergenic |
| TGCAGCTAGCCATGGAGTGA+TGG | 0.535942 | 7.4:-28997358 | None:intergenic |
| CGAATGATGGAGAGACCATA+AGG | 0.538414 | 7.4:-28989281 | None:intergenic |
| CATAATTGCAGGTGGACGAT+TGG | 0.539123 | 7.4:+28993493 | MS.gene52206:CDS |
| ACAGTGAAAGAGTGGCAGTT+GGG | 0.539147 | 7.4:+28998341 | MS.gene52206:intron |
| AGATGTCGTTCTTGTTTCTG+AGG | 0.542523 | 7.4:+28986737 | MS.gene52206:CDS |
| CCCAGTCGTCATGGGGACAT+TGG | 0.543270 | 7.4:+28996797 | MS.gene52206:CDS |
| AATGGCTCTTTCATTGGCCG+AGG | 0.543661 | 7.4:+28986293 | MS.gene52206:CDS |
| CGCAATGTTGATTATGTGGA+AGG | 0.544410 | 7.4:+28985937 | MS.gene52206:CDS |
| GCGAGAGCACATCACGGCAT+GGG | 0.544996 | 7.4:+28991927 | MS.gene52206:CDS |
| ATAACTATAGCAGCAGGGCC+AGG | 0.545855 | 7.4:-28989702 | None:intergenic |
| GCTATTACTCTAGATACGCC+TGG | 0.547444 | 7.4:+28998523 | MS.gene52206:CDS |
| TTGCAGATAGTATGAGGCCC+TGG | 0.547805 | 7.4:-28987091 | None:intergenic |
| ACTGTTCTATAATTTGCTCC+AGG | 0.550693 | 7.4:-28998541 | None:intergenic |
| TCACCTAATTCTTCCAAAGG+AGG | 0.551702 | 7.4:+28993204 | MS.gene52206:CDS |
| AGAAGATATAAAGAAATGCC+AGG | 0.552487 | 7.4:+28986434 | MS.gene52206:CDS |
| ATAACAGGCAGGACTTTCCA+TGG | 0.553724 | 7.4:+28995466 | MS.gene52206:intron |
| AACAGTGAAAGAGTGGCAGT+TGG | 0.555276 | 7.4:+28998340 | MS.gene52206:intron |
| TGGTTCTTCCAAAATTTGGC+CGG | 0.555973 | 7.4:-28986877 | None:intergenic |
| TTTATTTAATATTGGCCTGG+AGG | 0.557808 | 7.4:+28989352 | MS.gene52206:CDS |
| TTTGGGACTCTTCTTTATGA+CGG | 0.559756 | 7.4:+28995580 | MS.gene52206:CDS |
| AAGATTTGGTTGAAGTGTCA+GGG | 0.563485 | 7.4:+28985880 | MS.gene52206:CDS |
| GCTGCTATAGTTATCGGGAA+TGG | 0.563742 | 7.4:+28989711 | MS.gene52206:CDS |
| TCACTCCATGATCAACGTCA+TGG | 0.563853 | 7.4:-28998612 | None:intergenic |
| ATTTCACCTAATTCTTCCAA+AGG | 0.564809 | 7.4:+28993201 | MS.gene52206:CDS |
| CTGGAAAACTGATGTTGGTG+TGG | 0.567867 | 7.4:-28987072 | None:intergenic |
| TGGCCGCAATGTTGATTATG+TGG | 0.567997 | 7.4:+28985933 | MS.gene52206:CDS |
| GATTATTGTTAATGGGAGCA+GGG | 0.569622 | 7.4:+28987141 | MS.gene52206:CDS |
| CTGGTCATAATGACATCTGC+CGG | 0.572203 | 7.4:-28987493 | None:intergenic |
| TGCGTCGTTACCTCATCAAG+AGG | 0.575417 | 7.4:+28987594 | MS.gene52206:CDS |
| GATGATGCCCAAGTCTCTGA+AGG | 0.576362 | 7.4:+28999941 | MS.gene52206:CDS |
| CCAATGTCCCCATGACGACT+GGG | 0.579840 | 7.4:-28996797 | None:intergenic |
| TGCTGTTCAAAATGCTACAA+TGG | 0.580156 | 7.4:+28986275 | MS.gene52206:CDS |
| AGGTTCAGGTGAGGATGTAG+GGG | 0.580917 | 7.4:+28985957 | MS.gene52206:CDS |
| TTTATTACCTGTAGAAAGTG+AGG | 0.581710 | 7.4:+28997428 | MS.gene52206:CDS |
| AAACAACAAAGAAGACAGCT+GGG | 0.586366 | 7.4:-28997313 | None:intergenic |
| CAATATTAACAGTGAAAGAG+TGG | 0.593017 | 7.4:+28998333 | MS.gene52206:intron |
| TTGTTGCACTAGATGTGAGA+AGG | 0.595150 | 7.4:+28997803 | MS.gene52206:CDS |
| CTTGCTTGTATATTGGCCGA+AGG | 0.595545 | 7.4:-28994666 | None:intergenic |
| TAGTTGAAGACTTGGCTCCA+AGG | 0.598124 | 7.4:-28998843 | None:intergenic |
| TTTCAATGGCCATCACTCCA+TGG | 0.599069 | 7.4:+28997349 | MS.gene52206:CDS |
| TCTTGTTTCTGAGGAGAACA+TGG | 0.601006 | 7.4:+28986746 | MS.gene52206:CDS |
| CAGTCCGAGAGCTTCAGCAA+TGG | 0.601756 | 7.4:-28993438 | None:intergenic |
| AGCTCTTAAAGCAGAAATGA+CGG | 0.602427 | 7.4:-28996880 | None:intergenic |
| CTATAGCAGCAGGGCCAGGT+AGG | 0.602783 | 7.4:-28989698 | None:intergenic |
| GAAAGTTCTAATGAGAGTGA+TGG | 0.604578 | 7.4:+28986366 | MS.gene52206:CDS |
| AAAGGCCTTGAAAGAGCTTG+AGG | 0.606145 | 7.4:+28986095 | MS.gene52206:CDS |
| AACCTGCAGAACAACGGCGG+TGG | 0.607892 | 7.4:-28989748 | None:intergenic |
| TTTCGGATTAGGTTCTGCGC+AGG | 0.608084 | 7.4:+28989514 | MS.gene52206:CDS |
| CTGAAAGCTCAGCTAGATGT+CGG | 0.608672 | 7.4:-28999469 | None:intergenic |
| TTGGTGGCTCATTATATCTG+TGG | 0.608804 | 7.4:+28989675 | MS.gene52206:CDS |
| TCTGATATTGCTCCATATCG+TGG | 0.610625 | 7.4:+28995551 | MS.gene52206:CDS |
| TTTATTAACCTGCAGAACAA+CGG | 0.611301 | 7.4:-28989754 | None:intergenic |
| CAGCATCTCCAAAGTACACA+GGG | 0.613542 | 7.4:-28998378 | None:intergenic |
| TGCTCTATTGGCATAGACAG+CGG | 0.615854 | 7.4:-28987446 | None:intergenic |
| TAACCAGAGCATGTCAAAGA+GGG | 0.617443 | 7.4:-28987720 | None:intergenic |
| ACATTGGCACTCTTAATATG+TGG | 0.617870 | 7.4:+28996813 | MS.gene52206:CDS |
| GAAAAGCAAACCTCTTGATG+AGG | 0.619192 | 7.4:-28987604 | None:intergenic |
| CAAAGATGCATCATCACTTG+TGG | 0.622519 | 7.4:-28986817 | None:intergenic |
| ATAACCAGAGCATGTCAAAG+AGG | 0.626787 | 7.4:-28987721 | None:intergenic |
| CCAGCATCTCCAAAGTACAC+AGG | 0.627720 | 7.4:-28998379 | None:intergenic |
| ACAAATGCAAATTCTCCACC+AGG | 0.629677 | 7.4:-28996918 | None:intergenic |
| TTCAGGTGAGGATGTAGGGG+TGG | 0.631281 | 7.4:+28985960 | MS.gene52206:CDS |
| ACATCTAGCTGAGCTTTCAG+AGG | 0.634116 | 7.4:+28999472 | MS.gene52206:CDS |
| CAAACTTCCCAGTCGTCATG+GGG | 0.634516 | 7.4:+28996790 | MS.gene52206:CDS |
| AGAAAAGGCCGGAGCTACTG+CGG | 0.636139 | 7.4:+28998639 | MS.gene52206:CDS |
| GGAGTGAATTTAGAAAAGGC+CGG | 0.639563 | 7.4:+28998628 | MS.gene52206:CDS |
| CCAGAGCATGTCAAAGAGGG+AGG | 0.644078 | 7.4:-28987717 | None:intergenic |
| GGATAATTTGACAAATTGCG+AGG | 0.646447 | 7.4:+28986455 | MS.gene52206:CDS |
| GGATGCAGTGAAAGCTGAGG+AGG | 0.652280 | 7.4:+28986563 | MS.gene52206:CDS |
| ACTCCATGGCTAGCTGCAGG+AGG | 0.652427 | 7.4:+28997363 | MS.gene52206:CDS |
| ATGCAGCTGTGTGAAGCAAG+TGG | 0.653482 | 7.4:+28999845 | MS.gene52206:intron |
| TGGAGATGCTGGCAGTCGAG+AGG | 0.657083 | 7.4:+28998390 | MS.gene52206:CDS |
| ATGATGCCCAAGTCTCTGAA+GGG | 0.658384 | 7.4:+28999942 | MS.gene52206:CDS |
| AGGCCCTGGAAAACTGATGT+TGG | 0.658841 | 7.4:-28987077 | None:intergenic |
| TGGTAATTGAGTTACCTCCA+GGG | 0.658952 | 7.4:-28987784 | None:intergenic |
| ATTACTGCCATAATTGCAGG+TGG | 0.662279 | 7.4:+28993485 | MS.gene52206:CDS |
| TTATGTGGAAGGTTCAGGTG+AGG | 0.669175 | 7.4:+28985948 | MS.gene52206:CDS |
| CCGTGTAAAATTCTTGACTG+TGG | 0.669322 | 7.4:-28985622 | None:intergenic |
| AGTTGGTAGTGACAAAGATG+TGG | 0.672766 | 7.4:+28986794 | MS.gene52206:CDS |
| CAAATTGCGAGGTAGAGTTG+AGG | 0.674319 | 7.4:+28986466 | MS.gene52206:CDS |
| TCCCGATAACTATAGCAGCA+GGG | 0.676337 | 7.4:-28989707 | None:intergenic |
| CTAGGTCCTTCATAAGATCG+GGG | 0.680706 | 7.4:+28998480 | MS.gene52206:intron |
| ACTGGATGCAGTGAAAGCTG+AGG | 0.687698 | 7.4:+28986560 | MS.gene52206:CDS |
| AAAGAGGCGAGAGCACATCA+CGG | 0.688490 | 7.4:+28991921 | MS.gene52206:CDS |
| ATTAACCTGCAGAACAACGG+CGG | 0.694494 | 7.4:-28989751 | None:intergenic |
| AGGATAATCACGTACCCTGG+CGG | 0.707499 | 7.4:-28994761 | None:intergenic |
| CTTCCACATAATCAACATTG+CGG | 0.714940 | 7.4:-28985936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 28985595 | 28999979 | 28985595 | ID=MS.gene52206 |
| chr7.4 | mRNA | 28985595 | 28999979 | 28985595 | ID=MS.gene52206.t1;Parent=MS.gene52206 |
| chr7.4 | exon | 28985595 | 28987162 | 28985595 | ID=MS.gene52206.t1.exon1;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28985595 | 28987162 | 28985595 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28987444 | 28987615 | 28987444 | ID=MS.gene52206.t1.exon2;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28987444 | 28987615 | 28987444 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28987701 | 28987791 | 28987701 | ID=MS.gene52206.t1.exon3;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28987701 | 28987791 | 28987701 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28989237 | 28989373 | 28989237 | ID=MS.gene52206.t1.exon4;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28989237 | 28989373 | 28989237 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28989476 | 28989535 | 28989476 | ID=MS.gene52206.t1.exon5;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28989476 | 28989535 | 28989476 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28989648 | 28989767 | 28989648 | ID=MS.gene52206.t1.exon6;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28989648 | 28989767 | 28989648 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28991911 | 28991979 | 28991911 | ID=MS.gene52206.t1.exon7;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28991911 | 28991979 | 28991911 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28993162 | 28993227 | 28993162 | ID=MS.gene52206.t1.exon8;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28993162 | 28993227 | 28993162 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28993425 | 28993514 | 28993425 | ID=MS.gene52206.t1.exon9;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28993425 | 28993514 | 28993425 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28994664 | 28994768 | 28994664 | ID=MS.gene52206.t1.exon10;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28994664 | 28994768 | 28994664 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28995473 | 28995601 | 28995473 | ID=MS.gene52206.t1.exon11;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28995473 | 28995601 | 28995473 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28996756 | 28996965 | 28996756 | ID=MS.gene52206.t1.exon12;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28996756 | 28996965 | 28996756 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28997300 | 28997449 | 28997300 | ID=MS.gene52206.t1.exon13;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28997300 | 28997449 | 28997300 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28997639 | 28997692 | 28997639 | ID=MS.gene52206.t1.exon14;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28997639 | 28997692 | 28997639 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28997766 | 28997824 | 28997766 | ID=MS.gene52206.t1.exon15;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28997766 | 28997824 | 28997766 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28998345 | 28998411 | 28998345 | ID=MS.gene52206.t1.exon16;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28998345 | 28998411 | 28998345 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28998484 | 28998660 | 28998484 | ID=MS.gene52206.t1.exon17;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28998484 | 28998660 | 28998484 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28998830 | 28998886 | 28998830 | ID=MS.gene52206.t1.exon18;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28998830 | 28998886 | 28998830 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28999419 | 28999493 | 28999419 | ID=MS.gene52206.t1.exon19;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28999419 | 28999493 | 28999419 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| chr7.4 | exon | 28999851 | 28999979 | 28999851 | ID=MS.gene52206.t1.exon20;Parent=MS.gene52206.t1 |
| chr7.4 | CDS | 28999851 | 28999979 | 28999851 | ID=cds.MS.gene52206.t1;Parent=MS.gene52206.t1 |
| Gene Sequence |
| Protein sequence |
