Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020478.t1 | XP_003609716.2 | 93.1 | 656 | 39 | 1 | 1 | 656 | 1 | 650 | 0.00E+00 | 1198.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020478.t1 | F4JJT9 | 71.4 | 664 | 165 | 4 | 3 | 656 | 2 | 650 | 6.5e-277 | 954.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020478.t1 | G7JLL8 | 93.1 | 656 | 39 | 1 | 1 | 656 | 1 | 650 | 0.0e+00 | 1198.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020478 | MS.gene62901 | PPI |
| MS.gene020478 | MS.gene048788 | PPI |
| MS.gene020478 | MS.gene015567 | PPI |
| MS.gene020478 | MS.gene71948 | PPI |
| MS.gene020478 | MS.gene72164 | PPI |
| MS.gene020478 | MS.gene072797 | PPI |
| MS.gene020478 | MS.gene011533 | PPI |
| MS.gene020478 | MS.gene030419 | PPI |
| MS.gene020478 | MS.gene050373 | PPI |
| MS.gene020478 | MS.gene47111 | PPI |
| MS.gene020478 | MS.gene55470 | PPI |
| MS.gene020478 | MS.gene070324 | PPI |
| MS.gene020478 | MS.gene074123 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020478.t1 | MTR_4g120810 | 96.353 | 658 | 14 | 3 | 1 | 656 | 1 | 650 | 0.0 | 1305 |
| MS.gene020478.t1 | MTR_8g104740 | 95.455 | 660 | 18 | 3 | 1 | 656 | 1 | 652 | 0.0 | 1298 |
| MS.gene020478.t1 | MTR_4g120810 | 95.987 | 598 | 14 | 3 | 1 | 596 | 1 | 590 | 0.0 | 1182 |
| MS.gene020478.t1 | MTR_8g104740 | 95.000 | 600 | 18 | 3 | 1 | 596 | 1 | 592 | 0.0 | 1168 |
| MS.gene020478.t1 | MTR_1g113700 | 85.550 | 609 | 61 | 3 | 57 | 656 | 6 | 596 | 0.0 | 1058 |
| MS.gene020478.t1 | MTR_4g052070 | 77.997 | 659 | 113 | 7 | 1 | 656 | 1 | 630 | 0.0 | 1022 |
| MS.gene020478.t1 | MTR_8g104740 | 98.864 | 440 | 5 | 0 | 217 | 656 | 1 | 440 | 0.0 | 910 |
| MS.gene020478.t1 | MTR_8g104740 | 99.042 | 313 | 3 | 0 | 284 | 596 | 1 | 313 | 0.0 | 651 |
| MS.gene020478.t1 | MTR_5g037520 | 87.736 | 106 | 13 | 0 | 763 | 868 | 247 | 352 | 8.95e-51 | 185 |
| MS.gene020478.t1 | MTR_2g036980 | 69.841 | 126 | 20 | 1 | 743 | 868 | 214 | 321 | 9.20e-44 | 164 |
| MS.gene020478.t1 | MTR_8g007295 | 24.658 | 292 | 182 | 9 | 71 | 345 | 83 | 353 | 1.25e-17 | 87.4 |
| MS.gene020478.t1 | MTR_8g007295 | 24.658 | 292 | 182 | 9 | 71 | 345 | 83 | 353 | 1.51e-17 | 87.8 |
| MS.gene020478.t1 | MTR_4g127770 | 25.694 | 144 | 105 | 2 | 201 | 343 | 728 | 870 | 1.30e-11 | 69.3 |
| MS.gene020478.t1 | MTR_4g127770 | 26.531 | 147 | 100 | 3 | 201 | 343 | 241 | 383 | 3.35e-11 | 67.8 |
| MS.gene020478.t1 | MTR_4g127790 | 25.694 | 144 | 105 | 2 | 201 | 343 | 39 | 181 | 2.06e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020478.t1 | AT4G33760 | 78.462 | 585 | 122 | 1 | 72 | 656 | 70 | 650 | 0.0 | 996 |
| MS.gene020478.t1 | AT4G33760 | 78.185 | 518 | 109 | 1 | 139 | 656 | 1 | 514 | 0.0 | 879 |
| MS.gene020478.t1 | AT3G13490 | 23.913 | 276 | 192 | 7 | 72 | 345 | 116 | 375 | 1.30e-14 | 78.6 |
| MS.gene020478.t1 | AT4G26870 | 27.950 | 322 | 173 | 11 | 84 | 362 | 79 | 384 | 5.15e-11 | 66.6 |
| MS.gene020478.t1 | AT3G11710 | 26.163 | 172 | 121 | 3 | 179 | 345 | 233 | 403 | 8.10e-11 | 66.2 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTGATATGGAAAATT+TGG | 0.049982 | 4.1:-2026363 | None:intergenic |
| TTCCCCTCATGTCAGATATT+TGG | 0.160996 | 4.1:+2023995 | MS.gene020478:intron |
| CGACATCGTTGGAAGTTAAT+TGG | 0.230061 | 4.1:-2013388 | None:intergenic |
| AATTAAAGTTGGAATGGTTT+TGG | 0.232428 | 4.1:-2013222 | None:intergenic |
| GTTTATGTGGCTCATGAATT+AGG | 0.251279 | 4.1:+2019356 | MS.gene020478:CDS |
| TCGTCAAAGGTAATGCTTTA+AGG | 0.270505 | 4.1:-2013157 | None:intergenic |
| TTCCTCTTTAAGAGAATCTT+TGG | 0.271786 | 4.1:-2013726 | None:intergenic |
| ACTTCAGAACTTGATGTATT+AGG | 0.272788 | 4.1:-2024100 | None:intergenic |
| TTCTGCTTTAGTATCAAGTA+TGG | 0.291029 | 4.1:+2019220 | MS.gene020478:CDS |
| ATCCATTATTTGCACCTCTA+AGG | 0.296549 | 4.1:-2023369 | None:intergenic |
| GCAAGGTTGTTCATGTCTTC+AGG | 0.297939 | 4.1:-2019699 | None:intergenic |
| TGGTGAAAATGAATTGATTA+TGG | 0.306247 | 4.1:+2022897 | MS.gene020478:CDS |
| GATAGCCAATTTCTCTGATA+TGG | 0.306649 | 4.1:-2026372 | None:intergenic |
| TTAACTGCAACTATAATGTT+AGG | 0.313515 | 4.1:-2022946 | None:intergenic |
| CTACATCCTCCAGTGTTGTT+TGG | 0.315148 | 4.1:-2024166 | None:intergenic |
| TTTCAGGCTGAAGCTAAGTT+TGG | 0.318198 | 4.1:+2021330 | MS.gene020478:intron |
| TCTAGATCAAATCTGGTATC+TGG | 0.318832 | 4.1:-2018688 | None:intergenic |
| GACTTACCAAGATCTCTTAA+AGG | 0.320508 | 4.1:-2024370 | None:intergenic |
| TTGCCATTCAAGGTGTTGTT+AGG | 0.321014 | 4.1:+2013576 | MS.gene020478:CDS |
| TTGTTCATGTCTTCAGGATT+TGG | 0.324171 | 4.1:-2019693 | None:intergenic |
| ATAGTTGCAGTTAAAGCATT+TGG | 0.324968 | 4.1:+2022955 | MS.gene020478:CDS |
| TTCTCTGATATGGAAAATTT+GGG | 0.325669 | 4.1:-2026362 | None:intergenic |
| AAATAATCCCGGGCACCTTC+TGG | 0.327607 | 4.1:-2016820 | None:intergenic |
| TTTCTCAGGGTCTTCCTTCA+AGG | 0.336742 | 4.1:+2018912 | MS.gene020478:CDS |
| AACACTTCCAGATGAATTTC+CGG | 0.336916 | 4.1:+2013511 | MS.gene020478:CDS |
| CAACTAGAGAGGATTTATTA+AGG | 0.343846 | 4.1:+2019249 | MS.gene020478:CDS |
| GGTATCGATATCTTGATCTA+AGG | 0.345062 | 4.1:+2016565 | MS.gene020478:intron |
| TTCTTGTTGATTGATTGATT+TGG | 0.350211 | 4.1:-2013605 | None:intergenic |
| AGACCATACCGGCATTGTTC+AGG | 0.353786 | 4.1:+2013484 | MS.gene020478:CDS |
| TCACTTCCTTTAAGAGATCT+TGG | 0.358006 | 4.1:+2024364 | MS.gene020478:CDS |
| AAGTTGCAGAGTATAATTAT+AGG | 0.359864 | 4.1:-2022863 | None:intergenic |
| AGAAGGACAACATCTCTTAT+AGG | 0.364089 | 4.1:-2024310 | None:intergenic |
| AAAGTAATTTGTGTACCTTC+TGG | 0.364160 | 4.1:+2018970 | MS.gene020478:CDS |
| AATGCAGGAGGCATAGCTTT+TGG | 0.364469 | 4.1:+2022081 | MS.gene020478:intron |
| TGCAATCAATAACCTTAGAT+TGG | 0.370097 | 4.1:+2013544 | MS.gene020478:CDS |
| CTAAATACCTGGATTCTTGA+TGG | 0.371339 | 4.1:-2016847 | None:intergenic |
| CGACATACAACAAAAGGTTT+TGG | 0.374977 | 4.1:+2019898 | MS.gene020478:CDS |
| CTGGTTGTGGAAATTAAAGT+TGG | 0.387880 | 4.1:-2013233 | None:intergenic |
| CAACCACATACTCCAATCTA+AGG | 0.390109 | 4.1:-2013556 | None:intergenic |
| GCTATTTAAGCAAATGCTAA+TGG | 0.395004 | 4.1:+2017504 | MS.gene020478:CDS |
| ATCAACAAGAAGATGAAAAC+TGG | 0.395189 | 4.1:+2013617 | MS.gene020478:CDS |
| GGCAAAACTGTTCGTCTTTG+TGG | 0.398786 | 4.1:+2013410 | MS.gene020478:CDS |
| TCAGGAAATTATAAAAGATC+AGG | 0.404435 | 4.1:+2023319 | MS.gene020478:intron |
| AGATTGGTTATGTTGCTAGC+TGG | 0.406190 | 4.1:+2022111 | MS.gene020478:CDS |
| GATTGGTTATGTTGCTAGCT+GGG | 0.406860 | 4.1:+2022112 | MS.gene020478:CDS |
| TTTGTGGCCTAAGGCCTTAG+AGG | 0.415244 | 4.1:+2023355 | MS.gene020478:CDS |
| CTGCAACTTATTATTATCAA+TGG | 0.415886 | 4.1:+2022877 | MS.gene020478:CDS |
| CTAGAGAGAAAGAAAATTGA+TGG | 0.416674 | 4.1:-2013194 | None:intergenic |
| TGCTTCAGCATATGTAAGCC+TGG | 0.420918 | 4.1:-2018641 | None:intergenic |
| GCTGAAGCAATGAATAGATA+TGG | 0.425444 | 4.1:+2018655 | MS.gene020478:CDS |
| AATCCACAAAATTGAATGTC+TGG | 0.427154 | 4.1:-2019490 | None:intergenic |
| TAAACGCGACATACAACAAA+AGG | 0.428071 | 4.1:+2019892 | MS.gene020478:CDS |
| TGAGTTCACACAACTAGATA+TGG | 0.428133 | 4.1:+2018172 | MS.gene020478:CDS |
| AAGGGATTCGTTGAGTGGTT+TGG | 0.431189 | 4.1:-2013336 | None:intergenic |
| TTAAATAGCTGAGGGCTTTG+TGG | 0.433840 | 4.1:-2017490 | None:intergenic |
| TAGCTGGGGCTAATTCAATC+AGG | 0.434319 | 4.1:+2022127 | MS.gene020478:CDS |
| ATGTAGTGAAGTTGTAGAAG+AGG | 0.434847 | 4.1:+2024183 | MS.gene020478:CDS |
| CATTGAGATTGCTGCAAATG+AGG | 0.438443 | 4.1:+2013643 | MS.gene020478:CDS |
| CCTTGCATCGGCTCGTGCAT+TGG | 0.439535 | 4.1:+2019716 | MS.gene020478:CDS |
| GTAAGCCTGGGGAAAGGGTT+TGG | 0.441264 | 4.1:-2018628 | None:intergenic |
| AAACTGTTCGTCTTTGTGGA+TGG | 0.443016 | 4.1:+2013414 | MS.gene020478:CDS |
| GAATCATTCCACTCAAACAT+TGG | 0.443454 | 4.1:-2019522 | None:intergenic |
| TTATTAAGGCGATGCTCTGC+AGG | 0.444994 | 4.1:+2019263 | MS.gene020478:CDS |
| CTCTGATTACTGATATGATT+AGG | 0.445203 | 4.1:+2024209 | MS.gene020478:CDS |
| TGCAATGACATTTGATGTGT+TGG | 0.447371 | 4.1:-2023017 | None:intergenic |
| AATGTTTGAGTGGAATGATT+CGG | 0.449218 | 4.1:+2019524 | MS.gene020478:CDS |
| TGCGCAACCGGAAATTCATC+TGG | 0.450378 | 4.1:-2013518 | None:intergenic |
| AGAGGAAAGGGTTCTGGTTG+TGG | 0.451123 | 4.1:-2013246 | None:intergenic |
| TTATACTTTGTCAGATTGGC+GGG | 0.451733 | 4.1:+2019852 | MS.gene020478:intron |
| CACTCAACGAATCCCTTCAA+TGG | 0.452205 | 4.1:+2013342 | MS.gene020478:CDS |
| TTGATTGCAGAATGCGCAAC+CGG | 0.452729 | 4.1:-2013530 | None:intergenic |
| ATCAAGTTCTGAAGTAGAAA+AGG | 0.454482 | 4.1:+2024108 | MS.gene020478:CDS |
| TGTTCAAGAAACCTGCGGTT+TGG | 0.456454 | 4.1:+2026310 | MS.gene020478:CDS |
| TGAAGAGTCGTGCGAGGAAG+TGG | 0.456530 | 4.1:+2024333 | MS.gene020478:CDS |
| TACAACGAAGCACACAAATC+TGG | 0.457051 | 4.1:+2019048 | MS.gene020478:CDS |
| AGGCCTAACAACACCTTGAA+TGG | 0.458898 | 4.1:-2013579 | None:intergenic |
| TTCGTTGAGTGGTTTGGCAG+TGG | 0.459133 | 4.1:-2013330 | None:intergenic |
| TTTCTCAAGATCACGGAGAA+TGG | 0.463469 | 4.1:+2019087 | MS.gene020478:CDS |
| CGTGGAACACTTACCTCAAT+CGG | 0.464305 | 4.1:-2013751 | None:intergenic |
| TCTTAAGAAACCTGGTGCAC+AGG | 0.464845 | 4.1:+2019017 | MS.gene020478:CDS |
| AGAACTTGATGTATTAGGCT+TGG | 0.467777 | 4.1:-2024095 | None:intergenic |
| AAGCAAATGCTAATGGTAGC+TGG | 0.467850 | 4.1:+2017511 | MS.gene020478:CDS |
| GAACTATCAATGAAGTGGGC+TGG | 0.469564 | 4.1:+2022919 | MS.gene020478:CDS |
| AACTATCAATGAAGTGGGCT+GGG | 0.469842 | 4.1:+2022920 | MS.gene020478:CDS |
| CATATGTAAGCCTGGGGAAA+GGG | 0.478597 | 4.1:-2018633 | None:intergenic |
| AACTGTTCGTCTTTGTGGAT+GGG | 0.478967 | 4.1:+2013415 | MS.gene020478:CDS |
| CTTATGACATGGTTTACAAT+GGG | 0.479877 | 4.1:+2019739 | MS.gene020478:CDS |
| GATCCACACCAGAAGGTGCC+CGG | 0.482589 | 4.1:+2016812 | MS.gene020478:CDS |
| TGAAGAGTTGTGCGAGAAAG+TGG | 0.485032 | 4.1:+2024279 | MS.gene020478:CDS |
| AAATTGATGGGGTGCGTCGA+AGG | 0.489063 | 4.1:-2013181 | None:intergenic |
| CATTGAAGGGATTCGTTGAG+TGG | 0.489601 | 4.1:-2013341 | None:intergenic |
| TTTAGTTCCATCAAGAATCC+AGG | 0.490512 | 4.1:+2016840 | MS.gene020478:CDS |
| AAGAGAATCTTTGGCATCAT+CGG | 0.497970 | 4.1:-2013717 | None:intergenic |
| AGCAATGAATAGATATGGTT+CGG | 0.498070 | 4.1:+2018660 | MS.gene020478:CDS |
| AGAAACAGAGGAAAGGGTTC+TGG | 0.500167 | 4.1:-2013252 | None:intergenic |
| TGCCAAAGATTCTCTTAAAG+AGG | 0.500755 | 4.1:+2013724 | MS.gene020478:CDS |
| ACTCAACGAATCCCTTCAAT+GGG | 0.501431 | 4.1:+2013343 | MS.gene020478:CDS |
| TTCTTGAAGCTCTTGACATG+GGG | 0.505034 | 4.1:+2021358 | MS.gene020478:CDS |
| TAAATACCACCCTGTGCACC+AGG | 0.505577 | 4.1:-2019027 | None:intergenic |
| GCACACAAATCTGGTGCAAA+GGG | 0.506073 | 4.1:+2019057 | MS.gene020478:CDS |
| TGAAGCAGAAACAGAGGAAA+GGG | 0.506946 | 4.1:-2013258 | None:intergenic |
| TTGAACCATGGCCAAACCGC+AGG | 0.508707 | 4.1:-2026321 | None:intergenic |
| AGAAACCTGCGGTTTGGCCA+TGG | 0.510379 | 4.1:+2026316 | MS.gene020478:CDS |
| GAGTATGTGGTTGCCATTCA+AGG | 0.511957 | 4.1:+2013566 | MS.gene020478:CDS |
| ATTTGCACCTCTAAGGCCTT+AGG | 0.514013 | 4.1:-2023362 | None:intergenic |
| GAGTTCTTGAAACCCATTGA+AGG | 0.515807 | 4.1:-2013355 | None:intergenic |
| TAGAGAGAAAGAAAATTGAT+GGG | 0.516501 | 4.1:-2013193 | None:intergenic |
| TTCTCTGATTCCTTGGAGTG+TGG | 0.517839 | 4.1:+2018937 | MS.gene020478:CDS |
| GGAGACTGTAGGCATCTCAA+TGG | 0.520526 | 4.1:+2019919 | MS.gene020478:CDS |
| TAACCTTAGATTGGAGTATG+TGG | 0.520626 | 4.1:+2013553 | MS.gene020478:CDS |
| GGAATCAGAGAAAACCTTGA+AGG | 0.521670 | 4.1:-2018926 | None:intergenic |
| TCAGGATTTGGTGCAGTGAA+AGG | 0.522281 | 4.1:-2019681 | None:intergenic |
| TAATGAAGAGTTGATCAGAA+AGG | 0.523027 | 4.1:+2018232 | MS.gene020478:CDS |
| TCGTGCATTGGCTTATGACA+TGG | 0.525618 | 4.1:+2019728 | MS.gene020478:CDS |
| ATTATACTTTGTCAGATTGG+CGG | 0.527189 | 4.1:+2019851 | MS.gene020478:intron |
| GGTGTGGATCTTGACAGTAT+TGG | 0.527300 | 4.1:-2016799 | None:intergenic |
| GCAATGACATTTGATGTGTT+GGG | 0.527448 | 4.1:-2023016 | None:intergenic |
| TTCTCCGTGATCTTGAGAAA+AGG | 0.528267 | 4.1:-2019084 | None:intergenic |
| AGAGACAACATATCCTCTAA+AGG | 0.530071 | 4.1:-2018209 | None:intergenic |
| AGCATTTGCTTAAATAGCTG+AGG | 0.531601 | 4.1:-2017499 | None:intergenic |
| AGATCGTCTTAGAGTTTATG+TGG | 0.532962 | 4.1:+2019343 | MS.gene020478:CDS |
| GCATATGTAAGCCTGGGGAA+AGG | 0.533395 | 4.1:-2018634 | None:intergenic |
| TAACCTGAACAATGCCGGTA+TGG | 0.533768 | 4.1:-2013487 | None:intergenic |
| GCTTCAGCATATGTAAGCCT+GGG | 0.534696 | 4.1:-2018640 | None:intergenic |
| TCGGTTGTAGTAACTAAGAA+TGG | 0.534853 | 4.1:-2013698 | None:intergenic |
| GCTTATGACATGGTTTACAA+TGG | 0.535736 | 4.1:+2019738 | MS.gene020478:CDS |
| TGTGGAAATTAAAGTTGGAA+TGG | 0.536332 | 4.1:-2013228 | None:intergenic |
| CAATTAACTTCCAACGATGT+CGG | 0.540000 | 4.1:+2013389 | MS.gene020478:CDS |
| AGCACACAAATCTGGTGCAA+AGG | 0.540341 | 4.1:+2019056 | MS.gene020478:CDS |
| CTTCTTGAAGCTCTTGACAT+GGG | 0.540430 | 4.1:+2021357 | MS.gene020478:CDS |
| AATTCAGTTCTTAAGAAACC+TGG | 0.540659 | 4.1:+2019009 | MS.gene020478:CDS |
| GTTTCTGTTTCAGAAGGAAG+TGG | 0.543539 | 4.1:-2013299 | None:intergenic |
| TGTAGGCATCTCAATGGAGC+AGG | 0.544534 | 4.1:+2019925 | MS.gene020478:CDS |
| TTGATGGAACTAAATAATCC+CGG | 0.544592 | 4.1:-2016831 | None:intergenic |
| TCTGATTCCTTGGAGTGTGG+TGG | 0.548275 | 4.1:+2018940 | MS.gene020478:CDS |
| AATTACCAAACCCTTTCCCC+AGG | 0.550475 | 4.1:+2018623 | MS.gene020478:CDS |
| GCAAATAAAATCAGATCACT+TGG | 0.551349 | 4.1:-2019287 | None:intergenic |
| AGTTCTTGAAACCCATTGAA+GGG | 0.554892 | 4.1:-2013354 | None:intergenic |
| ATGGTCTCTAAGATTGAGAA+AGG | 0.555297 | 4.1:-2013468 | None:intergenic |
| TAGCTGAGGGCTTTGTGGCA+AGG | 0.556212 | 4.1:-2017485 | None:intergenic |
| ATGAGAGTTTCTGTTTCAGA+AGG | 0.556345 | 4.1:-2013305 | None:intergenic |
| CTCAATCTTAGAGACCATAC+CGG | 0.558715 | 4.1:+2013473 | MS.gene020478:CDS |
| ATAAATATTATCAAGTAGCA+AGG | 0.559397 | 4.1:+2017539 | MS.gene020478:CDS |
| CTTAAGAAACCTGGTGCACA+GGG | 0.560030 | 4.1:+2019018 | MS.gene020478:CDS |
| GCATTTGCTTAAATAGCTGA+GGG | 0.564155 | 4.1:-2017498 | None:intergenic |
| ATCCCGGGCACCTTCTGGTG+TGG | 0.564930 | 4.1:-2016815 | None:intergenic |
| ATCCACACCAGAAGGTGCCC+GGG | 0.566710 | 4.1:+2016813 | MS.gene020478:CDS |
| CCGACTTTCCAATGTTTGAG+TGG | 0.567755 | 4.1:+2019514 | MS.gene020478:CDS |
| CCAATGCACGAGCCGATGCA+AGG | 0.567886 | 4.1:-2019716 | None:intergenic |
| TCTCGCACAACTCTTCAAGA+AGG | 0.569131 | 4.1:-2024273 | None:intergenic |
| CCACTCAAACATTGGAAAGT+CGG | 0.571037 | 4.1:-2019514 | None:intergenic |
| TTAAAGAGGAAGTCCGATTG+AGG | 0.573366 | 4.1:+2013738 | MS.gene020478:CDS |
| AATTGATGGGGTGCGTCGAA+GGG | 0.576335 | 4.1:-2013180 | None:intergenic |
| ATATCTAGTTGTGTGAACTC+AGG | 0.578660 | 4.1:-2018170 | None:intergenic |
| TGTTGTAACCTGAACAATGC+CGG | 0.579719 | 4.1:-2013492 | None:intergenic |
| ATACTTTGTCAGATTGGCGG+GGG | 0.581028 | 4.1:+2019854 | MS.gene020478:intron |
| TGACATGGTTTACAATGGGG+TGG | 0.585116 | 4.1:+2019743 | MS.gene020478:CDS |
| TTGAAGCAGAAACAGAGGAA+AGG | 0.587552 | 4.1:-2013259 | None:intergenic |
| CATGGTTTACAATGGGGTGG+AGG | 0.588103 | 4.1:+2019746 | MS.gene020478:CDS |
| TTATGGAACTATCAATGAAG+TGG | 0.591396 | 4.1:+2022914 | MS.gene020478:CDS |
| TGATATGGAAAATTTGGGAG+AGG | 0.591826 | 4.1:-2026357 | None:intergenic |
| AATAACACCACCACACTCCA+AGG | 0.592452 | 4.1:-2018947 | None:intergenic |
| TCTTCTTGAAGCTCTTGACA+TGG | 0.595100 | 4.1:+2021356 | MS.gene020478:CDS |
| AGTGGAATGATTCGGAGCAG+AGG | 0.597352 | 4.1:+2019532 | MS.gene020478:CDS |
| CCTCGGAAGGTGATCTCGTG+AGG | 0.598148 | 4.1:-2022191 | None:intergenic |
| AGAAGGACAACATCGTTGAA+AGG | 0.600314 | 4.1:-2024256 | None:intergenic |
| TCTGTTTCAGAAGGAAGTGG+TGG | 0.602903 | 4.1:-2013296 | None:intergenic |
| CTGTCAAGATCCACACCAGA+AGG | 0.603413 | 4.1:+2016805 | MS.gene020478:CDS |
| TTGATTGATTGATTTGGACG+AGG | 0.603430 | 4.1:-2013599 | None:intergenic |
| TGTTGGGGATCCACCTCGGA+AGG | 0.606271 | 4.1:-2022204 | None:intergenic |
| ATTGGTTATGTTGCTAGCTG+GGG | 0.606846 | 4.1:+2022113 | MS.gene020478:CDS |
| AGCTGGGGCTAATTCAATCA+GGG | 0.612567 | 4.1:+2022128 | MS.gene020478:CDS |
| TGATGGAACTAAATAATCCC+GGG | 0.612782 | 4.1:-2016830 | None:intergenic |
| ATCGATATCTTGATCTAAGG+AGG | 0.613730 | 4.1:+2016568 | MS.gene020478:CDS |
| GTGCGTCGAAGGGTCGTCAA+AGG | 0.615765 | 4.1:-2013170 | None:intergenic |
| TCTTGAAGCTCTTGACATGG+GGG | 0.620703 | 4.1:+2021359 | MS.gene020478:CDS |
| GAATCAACTCCAAACAACAC+TGG | 0.622054 | 4.1:+2024157 | MS.gene020478:CDS |
| TATGGATTCTGCAACTAGAG+AGG | 0.622469 | 4.1:+2019238 | MS.gene020478:CDS |
| TATACTTTGTCAGATTGGCG+GGG | 0.624951 | 4.1:+2019853 | MS.gene020478:intron |
| CCTCGCACGACTCTTCAAGA+AGG | 0.625648 | 4.1:-2024327 | None:intergenic |
| CATGTTGCTGCGGCATAATG+TGG | 0.628032 | 4.1:+2016608 | MS.gene020478:CDS |
| TGATTCGGAGCAGAGGCTTG+AGG | 0.628865 | 4.1:+2019539 | MS.gene020478:CDS |
| CACACAACTAGATATGGAGA+TGG | 0.630880 | 4.1:+2018178 | MS.gene020478:CDS |
| AGACATGAACAACCTTGCAT+CGG | 0.632479 | 4.1:+2019704 | MS.gene020478:CDS |
| CCTTCTTGAAGAGTCGTGCG+AGG | 0.635320 | 4.1:+2024327 | MS.gene020478:CDS |
| GGTTTGGCCATGGTTCAACA+TGG | 0.642281 | 4.1:+2026326 | MS.gene020478:CDS |
| CTCGGAAGGTGATCTCGTGA+GGG | 0.643918 | 4.1:-2022190 | None:intergenic |
| TTGTATTGAAGCAGAAACAG+AGG | 0.644634 | 4.1:-2013264 | None:intergenic |
| TTAGAAGACTTACCATGTGG+CGG | 0.647061 | 4.1:-2021384 | None:intergenic |
| TATGGAACTATCAATGAAGT+GGG | 0.651245 | 4.1:+2022915 | MS.gene020478:CDS |
| CCTCACGAGATCACCTTCCG+AGG | 0.653984 | 4.1:+2022191 | MS.gene020478:CDS |
| CTAATCATATCAGTAATCAG+AGG | 0.658638 | 4.1:-2024208 | None:intergenic |
| GTTGCACTTCACAGAGTCCA+CGG | 0.658925 | 4.1:+2013437 | MS.gene020478:CDS |
| TACTTTGTCAGATTGGCGGG+GGG | 0.661761 | 4.1:+2019855 | MS.gene020478:intron |
| GATCAAATCTGGTATCTGGA+CGG | 0.664712 | 4.1:-2018684 | None:intergenic |
| AAGTATGTTCAAGAAACCTG+CGG | 0.672599 | 4.1:+2026305 | MS.gene020478:CDS |
| TGAATTCTAACATGTTGCTG+CGG | 0.674898 | 4.1:+2016598 | MS.gene020478:CDS |
| AGATATCTAGAAGACATACA+TGG | 0.678657 | 4.1:+2016645 | MS.gene020478:CDS |
| TCAACTCCAAACAACACTGG+AGG | 0.682102 | 4.1:+2024160 | MS.gene020478:CDS |
| GATTAGGTCTAAAGAGACAA+CGG | 0.684940 | 4.1:+2024225 | MS.gene020478:CDS |
| CTTCAGCATATGTAAGCCTG+GGG | 0.689625 | 4.1:-2018639 | None:intergenic |
| AAGAAACCTGGTGCACAGGG+TGG | 0.690711 | 4.1:+2019021 | MS.gene020478:CDS |
| GTTTCAAGAACTCATCATTG+CGG | 0.693107 | 4.1:+2013365 | MS.gene020478:CDS |
| AGAGAGAAAGAAAATTGATG+GGG | 0.704931 | 4.1:-2013192 | None:intergenic |
| TTATGACATGGTTTACAATG+GGG | 0.724188 | 4.1:+2019740 | MS.gene020478:CDS |
| TGAGAAAGGTGAGTCCACCG+TGG | 0.751901 | 4.1:-2013454 | None:intergenic |
| GCACTTCACAGAGTCCACGG+TGG | 0.824126 | 4.1:+2013440 | MS.gene020478:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2013143 | 2026514 | 2013143 | ID=MS.gene020478 |
| chr4.1 | mRNA | 2013143 | 2026514 | 2013143 | ID=MS.gene020478.t1;Parent=MS.gene020478 |
| chr4.1 | exon | 2013143 | 2013759 | 2013143 | ID=MS.gene020478.t1.exon1;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2013143 | 2013759 | 2013143 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2016566 | 2016677 | 2016566 | ID=MS.gene020478.t1.exon2;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2016566 | 2016677 | 2016566 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2016790 | 2016861 | 2016790 | ID=MS.gene020478.t1.exon3;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2016790 | 2016861 | 2016790 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2017469 | 2017560 | 2017469 | ID=MS.gene020478.t1.exon4;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2017469 | 2017560 | 2017469 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2018133 | 2018253 | 2018133 | ID=MS.gene020478.t1.exon5;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2018133 | 2018253 | 2018133 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2018598 | 2018720 | 2018598 | ID=MS.gene020478.t1.exon6;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2018598 | 2018720 | 2018598 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2018901 | 2019108 | 2018901 | ID=MS.gene020478.t1.exon7;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2018901 | 2019108 | 2018901 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2019204 | 2019391 | 2019204 | ID=MS.gene020478.t1.exon8;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2019204 | 2019391 | 2019204 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2019489 | 2019560 | 2019489 | ID=MS.gene020478.t1.exon9;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2019489 | 2019560 | 2019489 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2019669 | 2019767 | 2019669 | ID=MS.gene020478.t1.exon10;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2019669 | 2019767 | 2019669 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2019866 | 2019946 | 2019866 | ID=MS.gene020478.t1.exon11;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2019866 | 2019946 | 2019866 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2021336 | 2021393 | 2021336 | ID=MS.gene020478.t1.exon12;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2021336 | 2021393 | 2021336 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2022088 | 2022212 | 2022088 | ID=MS.gene020478.t1.exon13;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2022088 | 2022212 | 2022088 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2022841 | 2023047 | 2022841 | ID=MS.gene020478.t1.exon14;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2022841 | 2023047 | 2022841 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2023323 | 2023376 | 2023323 | ID=MS.gene020478.t1.exon15;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2023323 | 2023376 | 2023323 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2024010 | 2024385 | 2024010 | ID=MS.gene020478.t1.exon16;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2024010 | 2024385 | 2024010 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2026304 | 2026409 | 2026304 | ID=MS.gene020478.t1.exon17;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2026304 | 2026409 | 2026304 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| chr4.1 | exon | 2026502 | 2026514 | 2026502 | ID=MS.gene020478.t1.exon18;Parent=MS.gene020478.t1 |
| chr4.1 | CDS | 2026502 | 2026514 | 2026502 | ID=cds.MS.gene020478.t1;Parent=MS.gene020478.t1 |
| Gene Sequence |
| Protein sequence |
