Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71948.t1 | XP_003608710.2 | 98.5 | 480 | 7 | 0 | 40 | 519 | 67 | 546 | 1.20E-279 | 971.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71948.t1 | O48593 | 81.2 | 484 | 87 | 2 | 40 | 519 | 84 | 567 | 1.4e-236 | 820.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71948.t1 | G7JIW4 | 98.5 | 480 | 7 | 0 | 40 | 519 | 67 | 546 | 8.7e-280 | 971.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene71948 | 0.830673 | 2.57E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene71948 | 0.811315 | 7.45E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene71948 | 0.872419 | 3.23E-67 | -1.69E-46 |
| MS.gene049427 | MS.gene71948 | 0.848088 | 7.66E-60 | -1.69E-46 |
| MS.gene049491 | MS.gene71948 | 0.83252 | 9.02E-56 | -1.69E-46 |
| MS.gene049615 | MS.gene71948 | 0.843654 | 1.23E-58 | -1.69E-46 |
| MS.gene049661 | MS.gene71948 | 0.844597 | 6.85E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene71948 | 0.839119 | 1.92E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene71948 | 0.812922 | 3.32E-51 | -1.69E-46 |
| MS.gene049760 | MS.gene71948 | 0.818943 | 1.51E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene71948 | 0.812301 | 4.54E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene71948 | 0.850745 | 1.39E-60 | -1.69E-46 |
| MS.gene050099 | MS.gene71948 | 0.810134 | 1.34E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene71948 | 0.856911 | 2.34E-62 | -1.69E-46 |
| MS.gene050397 | MS.gene71948 | 0.807082 | 6.01E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene71948 | 0.858459 | 8.12E-63 | -1.69E-46 |
| MS.gene050529 | MS.gene71948 | 0.80765 | 4.56E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene71948 | 0.835792 | 1.37E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene71948 | 0.843135 | 1.69E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene71948 | 0.803642 | 3.16E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene71948 | 0.845502 | 3.90E-59 | -1.69E-46 |
| MS.gene050770 | MS.gene71948 | 0.848781 | 4.92E-60 | -1.69E-46 |
| MS.gene050783 | MS.gene71948 | 0.840863 | 6.73E-58 | -1.69E-46 |
| MS.gene050812 | MS.gene71948 | 0.800093 | 1.69E-48 | -1.69E-46 |
| MS.gene05101 | MS.gene71948 | 0.862081 | 6.52E-64 | -1.69E-46 |
| MS.gene05105 | MS.gene71948 | 0.822747 | 2.01E-53 | -1.69E-46 |
| MS.gene051255 | MS.gene71948 | 0.811087 | 8.34E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene71948 | 0.867704 | 1.12E-65 | -1.69E-46 |
| MS.gene051471 | MS.gene71948 | 0.821149 | 4.71E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene71948 | 0.825543 | 4.43E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene71948 | 0.851336 | 9.49E-61 | -1.69E-46 |
| MS.gene051692 | MS.gene71948 | 0.822312 | 2.53E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene71948 | 0.840865 | 6.72E-58 | -1.69E-46 |
| MS.gene051877 | MS.gene71948 | 0.885694 | 6.52E-72 | -1.69E-46 |
| MS.gene052078 | MS.gene71948 | 0.86694 | 1.97E-65 | -1.69E-46 |
| MS.gene052188 | MS.gene71948 | 0.828786 | 7.41E-55 | -1.69E-46 |
| MS.gene052207 | MS.gene71948 | 0.80614 | 9.51E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene71948 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene71948 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene71948 | 0.84517 | 4.80E-59 | -1.69E-46 |
| MS.gene052322 | MS.gene71948 | 0.835437 | 1.68E-56 | -1.69E-46 |
| MS.gene052326 | MS.gene71948 | 0.871796 | 5.20E-67 | -1.69E-46 |
| MS.gene052379 | MS.gene71948 | 0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene71948 | 0.824137 | 9.50E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene71948 | 0.827572 | 1.45E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene71948 | 0.834997 | 2.17E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene71948 | 0.850866 | 1.29E-60 | -1.69E-46 |
| MS.gene053103 | MS.gene71948 | 0.806467 | 8.11E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene71948 | 0.814637 | 1.39E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene71948 | 0.838926 | 2.15E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene71948 | 0.808246 | 3.40E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene71948 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene71948 | 0.806338 | 8.64E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene71948 | 0.863622 | 2.18E-64 | -1.69E-46 |
| MS.gene053813 | MS.gene71948 | 0.819898 | 9.12E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene71948 | 0.830305 | 3.17E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene71948 | 0.846366 | 2.27E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene71948 | 0.857319 | 1.77E-62 | -1.69E-46 |
| MS.gene05455 | MS.gene71948 | 0.862609 | 4.49E-64 | -1.69E-46 |
| MS.gene054802 | MS.gene71948 | 0.87793 | 4.23E-69 | -1.69E-46 |
| MS.gene054803 | MS.gene71948 | 0.877257 | 7.26E-69 | -1.69E-46 |
| MS.gene054804 | MS.gene71948 | 0.877978 | 4.07E-69 | -1.69E-46 |
| MS.gene054927 | MS.gene71948 | 0.803609 | 3.21E-49 | -1.69E-46 |
| MS.gene054955 | MS.gene71948 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene71948 | 0.814132 | 1.80E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene71948 | 0.823436 | 1.39E-53 | -1.69E-46 |
| MS.gene055254 | MS.gene71948 | 0.803322 | 3.68E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene71948 | 0.858551 | 7.62E-63 | -1.69E-46 |
| MS.gene055390 | MS.gene71948 | 0.873124 | 1.87E-67 | -1.69E-46 |
| MS.gene055397 | MS.gene71948 | 0.821411 | 4.10E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene71948 | 0.864326 | 1.32E-64 | -1.69E-46 |
| MS.gene055428 | MS.gene71948 | 0.855914 | 4.58E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene71948 | 0.851907 | 6.54E-61 | -1.69E-46 |
| MS.gene055564 | MS.gene71948 | 0.809431 | 1.90E-50 | -1.69E-46 |
| MS.gene055633 | MS.gene71948 | 0.800194 | 1.62E-48 | -1.69E-46 |
| MS.gene055647 | MS.gene71948 | 0.84616 | 2.59E-59 | -1.69E-46 |
| MS.gene055712 | MS.gene71948 | 0.812286 | 4.58E-51 | -1.69E-46 |
| MS.gene055896 | MS.gene71948 | 0.820907 | 5.35E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene71948 | 0.822751 | 2.00E-53 | -1.69E-46 |
| MS.gene055930 | MS.gene71948 | 0.835365 | 1.75E-56 | -1.69E-46 |
| MS.gene05602 | MS.gene71948 | 0.855269 | 7.07E-62 | -1.69E-46 |
| MS.gene056083 | MS.gene71948 | 0.802017 | 6.85E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene71948 | 0.820169 | 7.90E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene71948 | 0.808437 | 3.10E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene71948 | 0.873807 | 1.10E-67 | -1.69E-46 |
| MS.gene056410 | MS.gene71948 | 0.882818 | 7.57E-71 | -1.69E-46 |
| MS.gene056452 | MS.gene71948 | 0.843141 | 1.68E-58 | -1.69E-46 |
| MS.gene056511 | MS.gene71948 | 0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene71948 | 0.824475 | 7.91E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene71948 | 0.832367 | 9.85E-56 | -1.69E-46 |
| MS.gene056931 | MS.gene71948 | 0.821905 | 3.15E-53 | -1.69E-46 |
| MS.gene056933 | MS.gene71948 | 0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene056935 | MS.gene71948 | 0.821354 | 4.22E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene71948 | 0.856855 | 2.43E-62 | -1.69E-46 |
| MS.gene05702 | MS.gene71948 | 0.809236 | 2.09E-50 | -1.69E-46 |
| MS.gene057123 | MS.gene71948 | 0.839788 | 1.29E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene71948 | 0.85835 | 8.75E-63 | -1.69E-46 |
| MS.gene057146 | MS.gene71948 | 0.874335 | 7.32E-68 | -1.69E-46 |
| MS.gene057285 | MS.gene71948 | 0.807475 | 4.96E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene71948 | 0.855386 | 6.53E-62 | -1.69E-46 |
| MS.gene057331 | MS.gene71948 | 0.814734 | 1.33E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene71948 | 0.804756 | 1.85E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene71948 | 0.845697 | 3.46E-59 | -1.69E-46 |
| MS.gene057448 | MS.gene71948 | 0.810164 | 1.32E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene71948 | 0.801788 | 7.63E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene71948 | 0.817887 | 2.61E-52 | -1.69E-46 |
| MS.gene057478 | MS.gene71948 | -0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene71948 | 0.809579 | 1.76E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene71948 | 0.817852 | 2.66E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene71948 | 0.834981 | 2.19E-56 | -1.69E-46 |
| MS.gene058006 | MS.gene71948 | 0.806352 | 8.57E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene71948 | 0.858045 | 1.08E-62 | -1.69E-46 |
| MS.gene058082 | MS.gene71948 | 0.814908 | 1.21E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene71948 | 0.850323 | 1.83E-60 | -1.69E-46 |
| MS.gene058233 | MS.gene71948 | 0.813825 | 2.10E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene71948 | 0.883482 | 4.32E-71 | -1.69E-46 |
| MS.gene058323 | MS.gene71948 | 0.825475 | 4.59E-54 | -1.69E-46 |
| MS.gene058365 | MS.gene71948 | 0.801053 | 1.08E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene71948 | 0.913124 | 8.85E-84 | -1.69E-46 |
| MS.gene058787 | MS.gene71948 | 0.83881 | 2.31E-57 | -1.69E-46 |
| MS.gene05883 | MS.gene71948 | 0.807441 | 5.05E-50 | -1.69E-46 |
| MS.gene058993 | MS.gene71948 | 0.839499 | 1.53E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene71948 | 0.863415 | 2.53E-64 | -1.69E-46 |
| MS.gene059141 | MS.gene71948 | 0.805352 | 1.39E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene71948 | 0.822128 | 2.80E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene71948 | 0.813811 | 2.12E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene71948 | 0.870705 | 1.19E-66 | -1.69E-46 |
| MS.gene059597 | MS.gene71948 | 0.840702 | 7.42E-58 | -1.69E-46 |
| MS.gene05959 | MS.gene71948 | 0.807506 | 4.89E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene71948 | 0.865056 | 7.78E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene71948 | 0.854181 | 1.46E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene71948 | 0.845011 | 5.30E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene71948 | 0.846656 | 1.89E-59 | -1.69E-46 |
| MS.gene059711 | MS.gene71948 | 0.810471 | 1.13E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene71948 | 0.87521 | 3.69E-68 | -1.69E-46 |
| MS.gene060005 | MS.gene71948 | 0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene060193 | MS.gene71948 | 0.843444 | 1.40E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene71948 | 0.820306 | 7.35E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene71948 | 0.845075 | 5.09E-59 | -1.69E-46 |
| MS.gene060559 | MS.gene71948 | 0.82456 | 7.56E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene71948 | 0.853982 | 1.67E-61 | -1.69E-46 |
| MS.gene060818 | MS.gene71948 | 0.832727 | 8.01E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene71948 | 0.824912 | 6.24E-54 | -1.69E-46 |
| MS.gene06090 | MS.gene71948 | 0.827081 | 1.90E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene71948 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene71948 | 0.81722 | 3.69E-52 | -1.69E-46 |
| MS.gene061051 | MS.gene71948 | -0.830329 | 3.12E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene71948 | 0.891871 | 2.67E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044767 | MS.gene71948 | PPI |
| MS.gene056264 | MS.gene71948 | PPI |
| MS.gene98667 | MS.gene71948 | PPI |
| MS.gene71948 | MS.gene88178 | PPI |
| MS.gene020478 | MS.gene71948 | PPI |
| MS.gene063697 | MS.gene71948 | PPI |
| MS.gene98602 | MS.gene71948 | PPI |
| MS.gene88176 | MS.gene71948 | PPI |
| MS.gene91166 | MS.gene71948 | PPI |
| MS.gene015696 | MS.gene71948 | PPI |
| MS.gene044769 | MS.gene71948 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71948.t1 | MTR_4g100920 | 98.542 | 480 | 7 | 0 | 40 | 519 | 67 | 546 | 0.0 | 991 |
| MS.gene71948.t1 | MTR_4g100920 | 98.667 | 375 | 5 | 0 | 40 | 414 | 67 | 441 | 0.0 | 773 |
| MS.gene71948.t1 | MTR_7g101050 | 47.761 | 536 | 195 | 13 | 62 | 519 | 48 | 576 | 1.98e-158 | 463 |
| MS.gene71948.t1 | MTR_8g102050 | 64.437 | 284 | 97 | 2 | 239 | 519 | 269 | 551 | 1.98e-130 | 390 |
| MS.gene71948.t1 | MTR_8g102050 | 48.214 | 168 | 79 | 4 | 62 | 225 | 31 | 194 | 3.19e-42 | 159 |
| MS.gene71948.t1 | MTR_8g011530 | 45.387 | 271 | 145 | 3 | 244 | 513 | 359 | 627 | 7.00e-78 | 256 |
| MS.gene71948.t1 | MTR_8g011530 | 39.873 | 158 | 87 | 4 | 72 | 226 | 129 | 281 | 4.25e-27 | 115 |
| MS.gene71948.t1 | MTR_1g014140 | 25.304 | 494 | 287 | 16 | 59 | 514 | 87 | 536 | 3.36e-31 | 127 |
| MS.gene71948.t1 | MTR_5g028360 | 25.243 | 515 | 286 | 19 | 43 | 514 | 126 | 584 | 2.38e-29 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71948.t1 | AT4G17300 | 81.198 | 484 | 87 | 2 | 40 | 519 | 104 | 587 | 0.0 | 837 |
| MS.gene71948.t1 | AT4G17300 | 81.198 | 484 | 87 | 2 | 40 | 519 | 84 | 567 | 0.0 | 837 |
| MS.gene71948.t1 | AT1G70980 | 48.015 | 529 | 200 | 9 | 62 | 519 | 47 | 571 | 2.66e-168 | 488 |
| MS.gene71948.t1 | AT5G56680 | 46.852 | 540 | 212 | 11 | 50 | 519 | 38 | 572 | 1.45e-155 | 456 |
| MS.gene71948.t1 | AT3G07420 | 38.370 | 503 | 240 | 9 | 80 | 517 | 139 | 636 | 1.69e-113 | 350 |
| MS.gene71948.t1 | AT3G07420 | 34.293 | 382 | 182 | 8 | 80 | 396 | 139 | 516 | 3.32e-63 | 216 |
| MS.gene71948.t1 | AT4G26870 | 23.636 | 495 | 306 | 13 | 49 | 512 | 72 | 525 | 2.06e-31 | 127 |
| MS.gene71948.t1 | AT4G31180 | 25.251 | 499 | 295 | 16 | 52 | 514 | 97 | 553 | 9.72e-28 | 117 |
| MS.gene71948.t1 | AT4G31180 | 25.251 | 499 | 295 | 16 | 52 | 514 | 97 | 553 | 9.72e-28 | 117 |
| MS.gene71948.t1 | AT1G68420 | 50.000 | 86 | 42 | 1 | 275 | 359 | 1 | 86 | 3.42e-22 | 91.3 |
Find 96 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGTTCTTTCAAGAAAA+TGG | 0.089321 | 8.3:+20179727 | MS.gene71948:CDS |
| CAAGGCACTTGGCTGAATTT+TGG | 0.094094 | 8.3:+20180876 | MS.gene71948:CDS |
| CGGCAACACTCTCGTCCTTC+AGG | 0.246810 | 8.3:+20176942 | MS.gene71948:CDS |
| CCTCATGCAGGCTTTGGTTT+GGG | 0.253456 | 8.3:+20183758 | MS.gene71948:CDS |
| TTTGAAGATAAGACACATTC+TGG | 0.256350 | 8.3:+20181185 | MS.gene71948:intron |
| GCTCAAATCGTTCTTCTCTT+TGG | 0.273543 | 8.3:-20182832 | None:intergenic |
| CTTGGCTTTGTAGGTGAAAT+GGG | 0.280461 | 8.3:+20182072 | MS.gene71948:intron |
| AGATGATTTAAAGCTAAATA+AGG | 0.300923 | 8.3:+20182871 | MS.gene71948:CDS |
| GGATAGTCTCTGATTATAAC+AGG | 0.301301 | 8.3:-20182154 | None:intergenic |
| TTTAATACATGGATTGATAA+AGG | 0.305854 | 8.3:+20181234 | MS.gene71948:CDS |
| TGTTAGATTGGTGAACTTAT+TGG | 0.307426 | 8.3:+20182803 | MS.gene71948:intron |
| TCCTCATGCAGGCTTTGGTT+TGG | 0.310446 | 8.3:+20183757 | MS.gene71948:CDS |
| CCCATGCAGGTGTATACATT+TGG | 0.327616 | 8.3:+20180821 | MS.gene71948:intron |
| ACTTGGCTTTGTAGGTGAAA+TGG | 0.332098 | 8.3:+20182071 | MS.gene71948:intron |
| CAATCTGAAGCTGTGATAAT+AGG | 0.344480 | 8.3:-20179769 | None:intergenic |
| TTCTAATATGCAATGTGTAT+TGG | 0.346387 | 8.3:+20177182 | MS.gene71948:CDS |
| GATTTGCGTCGTTATGGTTC+AGG | 0.349152 | 8.3:+20182914 | MS.gene71948:CDS |
| GCAGTTCCTCATGCAGGCTT+TGG | 0.349864 | 8.3:+20183752 | MS.gene71948:intron |
| TATCTTGATTTGCGTCGTTA+TGG | 0.358263 | 8.3:+20182908 | MS.gene71948:CDS |
| CGTGCAAGGACAAATACTTT+TGG | 0.359093 | 8.3:+20178498 | MS.gene71948:CDS |
| AAATAAGAAATTTGAATTCC+CGG | 0.371942 | 8.3:+20181457 | MS.gene71948:CDS |
| TCAGTTGTTTCATGAGAATT+CGG | 0.383059 | 8.3:-20180438 | None:intergenic |
| TATCCATTCCTGTTGCAAAC+TGG | 0.384553 | 8.3:-20183796 | None:intergenic |
| ACAAGTTCTTTCAAGAAAAT+GGG | 0.396971 | 8.3:+20179728 | MS.gene71948:CDS |
| TATATAACTGAAGAGGCATT+TGG | 0.407178 | 8.3:+20182124 | MS.gene71948:CDS |
| TTCAAGAAAATGGGTTCGTA+TGG | 0.411619 | 8.3:+20179737 | MS.gene71948:CDS |
| AGACTTGTCCAGTTTGCAAC+AGG | 0.411746 | 8.3:+20183788 | MS.gene71948:CDS |
| ATATTATTATTAGGTAGAAT+CGG | 0.414667 | 8.3:+20178099 | MS.gene71948:intron |
| CACTCTCGTCCTTCAGGGAT+GGG | 0.433306 | 8.3:+20176948 | MS.gene71948:CDS |
| CAATCTCATGTTGATGTTGT+CGG | 0.434537 | 8.3:-20175746 | None:intergenic |
| CAGAGAATTCTAACACTTCA+AGG | 0.439982 | 8.3:+20180858 | MS.gene71948:CDS |
| GATTTCAGGTTGCAAGGGTT+AGG | 0.450468 | 8.3:+20179683 | MS.gene71948:intron |
| TGCGTTAAGTTGGCCTGAAA+CGG | 0.453395 | 8.3:-20180677 | None:intergenic |
| CGACGACTTTGAGCTTCTTA+CGG | 0.459788 | 8.3:-20176891 | None:intergenic |
| GGCAACACTCTCGTCCTTCA+GGG | 0.460545 | 8.3:+20176943 | MS.gene71948:CDS |
| TCAACTCTTTCAGGATATCA+AGG | 0.460987 | 8.3:+20182375 | MS.gene71948:intron |
| TGGTATGCAGTTCCTCATGC+AGG | 0.462748 | 8.3:+20183746 | MS.gene71948:intron |
| TATTATTATTAGGTAGAATC+GGG | 0.472422 | 8.3:+20178100 | MS.gene71948:intron |
| TACTAGAACTCAGCCGAGCC+AGG | 0.474870 | 8.3:-20183851 | None:intergenic |
| TGTTGTGTTTAGATTAATGA+TGG | 0.476786 | 8.3:+20177150 | MS.gene71948:intron |
| ACACTCTCGTCCTTCAGGGA+TGG | 0.477744 | 8.3:+20176947 | MS.gene71948:CDS |
| GAGCCAGGTGTTCGAGGAAA+AGG | 0.478464 | 8.3:-20183836 | None:intergenic |
| AGCTAAATAAGGATGCATAT+TGG | 0.479063 | 8.3:+20182882 | MS.gene71948:CDS |
| CATAAGTTTCTGCGTTAAGT+TGG | 0.481268 | 8.3:-20180687 | None:intergenic |
| TAAAATGATTTCAGGTTGCA+AGG | 0.481951 | 8.3:+20179677 | MS.gene71948:intron |
| TGAGGTTGAAGGTTATGATC+AGG | 0.492658 | 8.3:+20177209 | MS.gene71948:CDS |
| TTCTAACACTTCAAGGCACT+TGG | 0.499429 | 8.3:+20180865 | MS.gene71948:CDS |
| TCAGCCGAGCCAGGTGTTCG+AGG | 0.505554 | 8.3:-20183842 | None:intergenic |
| TTGAGCTTCTTACGGAATTG+TGG | 0.508941 | 8.3:-20176883 | None:intergenic |
| AGCTTCAGATTGTGAGGGAG+CGG | 0.510026 | 8.3:+20179780 | MS.gene71948:CDS |
| AAAATGATAAATTAATTGAC+TGG | 0.517612 | 8.3:+20180484 | MS.gene71948:CDS |
| GAAGCTCAACAAAATAGTAC+TGG | 0.517935 | 8.3:+20178201 | MS.gene71948:CDS |
| TGTCCAGTTTGCAACAGGAA+TGG | 0.522041 | 8.3:+20183793 | MS.gene71948:CDS |
| AAAGGTTACATACTACAAAC+CGG | 0.532543 | 8.3:-20181064 | None:intergenic |
| GGTGCATCTGTGTGGGTGCA+AGG | 0.532793 | 8.3:+20178136 | MS.gene71948:CDS |
| TACATGCGACAGAATGATGA+TGG | 0.534164 | 8.3:+20182403 | MS.gene71948:CDS |
| AGATCAGCAAATGCAAGCTC+CGG | 0.539627 | 8.3:-20181008 | None:intergenic |
| CTTGTGCAACTGCATATCTC+CGG | 0.540089 | 8.3:+20181045 | MS.gene71948:CDS |
| GCTTCAGATTGTGAGGGAGC+GGG | 0.540381 | 8.3:+20179781 | MS.gene71948:CDS |
| ATAACTGAAGAGGCATTTGG+TGG | 0.544359 | 8.3:+20182127 | MS.gene71948:CDS |
| TATCACAGCTTCAGATTGTG+AGG | 0.549441 | 8.3:+20179774 | MS.gene71948:CDS |
| GCTTCTTCAGATGATTGAGC+CGG | 0.549993 | 8.3:+20180989 | MS.gene71948:intron |
| AGAATTCTCTGCTCGAAATG+TGG | 0.561347 | 8.3:-20180846 | None:intergenic |
| TGCAAGGGTTAGGAATGCAT+TGG | 0.564334 | 8.3:+20179693 | MS.gene71948:CDS |
| GAATCGGGCTTGATTACCAC+TGG | 0.564483 | 8.3:+20178115 | MS.gene71948:CDS |
| TGGAAGAACAGTTGCTGCGA+TGG | 0.566617 | 8.3:+20182423 | MS.gene71948:CDS |
| GAATTCTCTGCTCGAAATGT+GGG | 0.568963 | 8.3:-20180845 | None:intergenic |
| TCAAGAAAATGGGTTCGTAT+GGG | 0.569289 | 8.3:+20179738 | MS.gene71948:CDS |
| AAAATGATTTCAGGTTGCAA+GGG | 0.570757 | 8.3:+20179678 | MS.gene71948:intron |
| GGATAACTGCAAGGAAGACA+TGG | 0.572443 | 8.3:+20181206 | MS.gene71948:CDS |
| GACGATCAATTCGATTCCCT+CGG | 0.572461 | 8.3:+20176922 | MS.gene71948:CDS |
| GAGTACGAACCCATCCCTGA+AGG | 0.578582 | 8.3:-20176957 | None:intergenic |
| TAGATTGGTGAACTTATTGG+TGG | 0.582509 | 8.3:+20182806 | MS.gene71948:intron |
| TAAATAAGGATGCATATTGG+TGG | 0.584423 | 8.3:+20182885 | MS.gene71948:CDS |
| CAAAAGCACATCTTCGTGCA+AGG | 0.585364 | 8.3:+20178484 | MS.gene71948:CDS |
| TGCTGATCTAAACGATGACA+TGG | 0.585724 | 8.3:+20181022 | MS.gene71948:CDS |
| GGAGTTGTGGTTAAAAGCCA+AGG | 0.595390 | 8.3:+20178157 | MS.gene71948:CDS |
| TACCACTGGTGCATCTGTGT+GGG | 0.602852 | 8.3:+20178129 | MS.gene71948:CDS |
| TGAGCGTTATATAACTGAAG+AGG | 0.609986 | 8.3:+20182117 | MS.gene71948:CDS |
| GAAGGACGAGAGTGTTGCCG+AGG | 0.614836 | 8.3:-20176939 | None:intergenic |
| CCCAAACCAAAGCCTGCATG+AGG | 0.617498 | 8.3:-20183758 | None:intergenic |
| ATCACAGCTTCAGATTGTGA+GGG | 0.619918 | 8.3:+20179775 | MS.gene71948:CDS |
| AAGGACGAGAGTGTTGCCGA+GGG | 0.621447 | 8.3:-20176938 | None:intergenic |
| TGTGTGGGTGCAAGGAGTTG+TGG | 0.625198 | 8.3:+20178144 | MS.gene71948:CDS |
| TTACCACTGGTGCATCTGTG+TGG | 0.625856 | 8.3:+20178128 | MS.gene71948:CDS |
| GATGGACATGTTGGTTCCGA+AGG | 0.626645 | 8.3:+20182441 | MS.gene71948:CDS |
| CACCCACACAGATGCACCAG+TGG | 0.627639 | 8.3:-20178131 | None:intergenic |
| TTGGCTTTGTAGGTGAAATG+GGG | 0.628609 | 8.3:+20182073 | MS.gene71948:intron |
| AGTTGCTGCGATGGACATGT+TGG | 0.630358 | 8.3:+20182432 | MS.gene71948:CDS |
| GTATTGGACACTGAGGTTGA+AGG | 0.631094 | 8.3:+20177198 | MS.gene71948:CDS |
| GAGTAGCGTCACTTTCCTCG+AGG | 0.642569 | 8.3:+20176990 | MS.gene71948:CDS |
| ACACATTCTGGATAACTGCA+AGG | 0.650791 | 8.3:+20181197 | MS.gene71948:CDS |
| GATAGTCTCTGATTATAACA+GGG | 0.688186 | 8.3:-20182153 | None:intergenic |
| TATAATCAGAGACTATCCAA+AGG | 0.701270 | 8.3:+20182159 | MS.gene71948:CDS |
| TGTGTGTACATCAGAAAGAG+CGG | 0.715375 | 8.3:-20180713 | None:intergenic |
| GCAATGTGTATTGGACACTG+AGG | 0.779503 | 8.3:+20177191 | MS.gene71948:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 20175682 | 20183871 | 20175682 | ID=MS.gene71948 |
| chr8.3 | mRNA | 20175682 | 20183871 | 20175682 | ID=MS.gene71948.t1;Parent=MS.gene71948 |
| chr8.3 | exon | 20175682 | 20175801 | 20175682 | ID=MS.gene71948.t1.exon1;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20175682 | 20175801 | 20175682 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20176880 | 20177011 | 20176880 | ID=MS.gene71948.t1.exon2;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20176880 | 20177011 | 20176880 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20177162 | 20177230 | 20177162 | ID=MS.gene71948.t1.exon3;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20177162 | 20177230 | 20177162 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20178112 | 20178222 | 20178112 | ID=MS.gene71948.t1.exon4;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20178112 | 20178222 | 20178112 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20178420 | 20178524 | 20178420 | ID=MS.gene71948.t1.exon5;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20178420 | 20178524 | 20178420 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20179691 | 20179828 | 20179691 | ID=MS.gene71948.t1.exon6;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20179691 | 20179828 | 20179691 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20180435 | 20180512 | 20180435 | ID=MS.gene71948.t1.exon7;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20180435 | 20180512 | 20180435 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20180649 | 20180726 | 20180649 | ID=MS.gene71948.t1.exon8;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20180649 | 20180726 | 20180649 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20180830 | 20180898 | 20180830 | ID=MS.gene71948.t1.exon9;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20180830 | 20180898 | 20180830 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20180999 | 20181073 | 20180999 | ID=MS.gene71948.t1.exon10;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20180999 | 20181073 | 20180999 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20181192 | 20181275 | 20181192 | ID=MS.gene71948.t1.exon11;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20181192 | 20181275 | 20181192 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20181392 | 20181478 | 20181392 | ID=MS.gene71948.t1.exon12;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20181392 | 20181478 | 20181392 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20182085 | 20182180 | 20182085 | ID=MS.gene71948.t1.exon13;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20182085 | 20182180 | 20182085 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20182388 | 20182462 | 20182388 | ID=MS.gene71948.t1.exon14;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20182388 | 20182462 | 20182388 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20182809 | 20182935 | 20182809 | ID=MS.gene71948.t1.exon15;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20182809 | 20182935 | 20182809 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| chr8.3 | exon | 20183756 | 20183871 | 20183756 | ID=MS.gene71948.t1.exon16;Parent=MS.gene71948.t1 |
| chr8.3 | CDS | 20183756 | 20183871 | 20183756 | ID=cds.MS.gene71948.t1;Parent=MS.gene71948.t1 |
| Gene Sequence |
| Protein sequence |
