Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074123.t1 | XP_013451394.1 | 98.1 | 672 | 13 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1204.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074123.t1 | A0A072U6R4 | 98.1 | 672 | 13 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1204.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050586 | MS.gene074123 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene050778 | MS.gene074123 | 0.800671 | 1.29E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene074123 | 0.817309 | 3.53E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene074123 | 0.812205 | 4.77E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene074123 | 0.824837 | 6.50E-54 | -1.69E-46 |
| MS.gene053074 | MS.gene074123 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene074123 | -0.805167 | 1.52E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene074123 | 0.843898 | 1.06E-58 | -1.69E-46 |
| MS.gene059937 | MS.gene074123 | 0.80402 | 2.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063697 | MS.gene074123 | PPI |
| MS.gene050373 | MS.gene074123 | PPI |
| MS.gene98602 | MS.gene074123 | PPI |
| MS.gene070324 | MS.gene074123 | PPI |
| MS.gene072797 | MS.gene074123 | PPI |
| MS.gene030419 | MS.gene074123 | PPI |
| MS.gene72164 | MS.gene074123 | PPI |
| MS.gene048788 | MS.gene074123 | PPI |
| MS.gene056264 | MS.gene074123 | PPI |
| MS.gene88176 | MS.gene074123 | PPI |
| MS.gene91166 | MS.gene074123 | PPI |
| MS.gene015696 | MS.gene074123 | PPI |
| MS.gene044769 | MS.gene074123 | PPI |
| MS.gene044767 | MS.gene074123 | PPI |
| MS.gene98667 | MS.gene074123 | PPI |
| MS.gene020478 | MS.gene074123 | PPI |
| MS.gene88178 | MS.gene074123 | PPI |
| MS.gene015567 | MS.gene074123 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074123.t1 | MTR_6g022830 | 97.917 | 672 | 14 | 0 | 1 | 672 | 1 | 672 | 0.0 | 1363 |
| MS.gene074123.t1 | MTR_6g023070 | 95.545 | 606 | 16 | 1 | 67 | 672 | 15 | 609 | 0.0 | 1178 |
| MS.gene074123.t1 | MTR_8g080080 | 49.548 | 664 | 299 | 17 | 1 | 656 | 1 | 636 | 0.0 | 552 |
| MS.gene074123.t1 | MTR_3g085830 | 46.377 | 690 | 301 | 17 | 1 | 662 | 1 | 649 | 0.0 | 535 |
| MS.gene074123.t1 | MTR_7g117620 | 29.582 | 311 | 177 | 10 | 75 | 379 | 17 | 291 | 3.44e-16 | 82.4 |
| MS.gene074123.t1 | MTR_4g062100 | 32.683 | 205 | 117 | 6 | 192 | 393 | 108 | 294 | 9.94e-16 | 81.3 |
| MS.gene074123.t1 | MTR_2g096190 | 29.126 | 206 | 125 | 6 | 192 | 394 | 104 | 291 | 9.48e-13 | 71.6 |
| MS.gene074123.t1 | MTR_2g096190 | 26.071 | 280 | 175 | 9 | 21 | 298 | 29 | 278 | 2.51e-12 | 70.5 |
| MS.gene074123.t1 | MTR_2g096190 | 29.302 | 215 | 132 | 5 | 102 | 315 | 66 | 261 | 1.33e-11 | 68.2 |
| MS.gene074123.t1 | MTR_2g096190 | 26.887 | 212 | 128 | 5 | 193 | 378 | 31 | 241 | 9.26e-11 | 65.5 |
| MS.gene074123.t1 | MTR_7g100390 | 30.851 | 188 | 114 | 4 | 192 | 378 | 52 | 224 | 3.76e-12 | 69.7 |
| MS.gene074123.t1 | MTR_2g101310 | 27.619 | 210 | 137 | 5 | 194 | 402 | 143 | 338 | 1.23e-11 | 68.2 |
| MS.gene074123.t1 | MTR_2g101310 | 27.619 | 210 | 137 | 5 | 194 | 402 | 143 | 338 | 2.67e-11 | 67.0 |
| MS.gene074123.t1 | MTR_1g032100 | 27.652 | 264 | 136 | 8 | 178 | 402 | 41 | 288 | 8.75e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074123.t1 | AT3G01750 | 54.290 | 676 | 274 | 16 | 1 | 660 | 1 | 657 | 0.0 | 638 |
| MS.gene074123.t1 | AT3G01750 | 54.290 | 676 | 274 | 16 | 1 | 660 | 1 | 657 | 0.0 | 638 |
| MS.gene074123.t1 | AT3G04140 | 42.940 | 687 | 311 | 19 | 1 | 662 | 1 | 631 | 1.67e-158 | 472 |
| MS.gene074123.t1 | AT1G07710 | 34.211 | 190 | 105 | 7 | 192 | 378 | 69 | 241 | 1.63e-14 | 77.4 |
| MS.gene074123.t1 | AT1G07710 | 29.437 | 231 | 135 | 7 | 175 | 395 | 80 | 292 | 3.48e-13 | 73.2 |
| MS.gene074123.t1 | AT1G07710 | 34.211 | 190 | 105 | 7 | 192 | 378 | 69 | 241 | 1.63e-14 | 77.4 |
| MS.gene074123.t1 | AT1G07710 | 29.437 | 231 | 135 | 7 | 175 | 395 | 80 | 292 | 3.48e-13 | 73.2 |
| MS.gene074123.t1 | AT5G60070 | 31.140 | 228 | 122 | 8 | 194 | 415 | 113 | 311 | 1.88e-14 | 77.0 |
| MS.gene074123.t1 | AT2G31820 | 30.846 | 201 | 122 | 5 | 194 | 393 | 229 | 413 | 2.71e-14 | 77.0 |
| MS.gene074123.t1 | AT4G10720 | 28.916 | 249 | 159 | 10 | 161 | 396 | 1 | 244 | 1.06e-12 | 70.9 |
| MS.gene074123.t1 | AT4G10720 | 28.916 | 249 | 159 | 10 | 161 | 396 | 1 | 244 | 2.05e-12 | 70.1 |
| MS.gene074123.t1 | AT5G51160 | 29.744 | 195 | 120 | 6 | 221 | 410 | 44 | 226 | 4.81e-12 | 68.9 |
| MS.gene074123.t1 | AT1G05640 | 29.565 | 230 | 133 | 8 | 162 | 378 | 115 | 328 | 6.48e-12 | 69.3 |
| MS.gene074123.t1 | AT2G01680 | 26.389 | 288 | 185 | 8 | 192 | 473 | 97 | 363 | 1.21e-11 | 68.2 |
Find 102 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTCTCTTAACCAATTT+TGG | 0.147681 | 6.1:+6673676 | None:intergenic |
| GTGAAATTCCTTCTGCTTAT+AGG | 0.154210 | 6.1:-6675558 | MS.gene074123:CDS |
| CAAAGAATTCTTCGATTTCT+TGG | 0.161238 | 6.1:+6675825 | None:intergenic |
| TTTCTCCACAAAGCTGTTTC+TGG | 0.173886 | 6.1:-6674693 | MS.gene074123:CDS |
| AAACTGTTCTGATGATATTT+TGG | 0.181955 | 6.1:-6675461 | MS.gene074123:CDS |
| GAGCATTAACTGCTGATAAT+TGG | 0.246246 | 6.1:+6674769 | None:intergenic |
| ATATCTGAATTCGATGAATT+AGG | 0.264367 | 6.1:+6674420 | None:intergenic |
| TACTAGTAGAGGTGGGATTA+TGG | 0.274384 | 6.1:-6675593 | MS.gene074123:CDS |
| GCAAATCTCTTCTTTGCATT+AGG | 0.324850 | 6.1:+6673856 | None:intergenic |
| TCAATTGATAATAAGCAAAA+AGG | 0.338339 | 6.1:-6673778 | MS.gene074123:CDS |
| ATCCAATGATGAAATTTCAT+TGG | 0.343388 | 6.1:-6674016 | MS.gene074123:CDS |
| GTCTTCGAAATGCATGAGTT+TGG | 0.348566 | 6.1:+6674667 | None:intergenic |
| AAGGGTCATTATTTCTGTTT+CGG | 0.353990 | 6.1:-6673637 | MS.gene074123:CDS |
| ATCCAATGAAATTTCATCAT+TGG | 0.355042 | 6.1:+6674014 | None:intergenic |
| ACAAAAGAACACTTTCTGTT+AGG | 0.359130 | 6.1:-6673894 | MS.gene074123:CDS |
| TCTTGAGAGGAATCCTTTGT+TGG | 0.364285 | 6.1:-6675728 | MS.gene074123:CDS |
| ATCTCGGCTGGTGGAATGTT+TGG | 0.373464 | 6.1:-6674381 | MS.gene074123:CDS |
| TGCTTATTATCAATTGATCT+AGG | 0.389908 | 6.1:+6673784 | None:intergenic |
| CATCATCGTGGTGGAATTGT+TGG | 0.393881 | 6.1:-6674219 | MS.gene074123:CDS |
| GGTATGCATCACCGATAGAC+TGG | 0.404408 | 6.1:-6676038 | MS.gene074123:CDS |
| TCACTTCCCTACGCCGAATC+AGG | 0.406153 | 6.1:-6675945 | MS.gene074123:CDS |
| TGATGATGAGACACCAAAAT+TGG | 0.413773 | 6.1:-6673689 | MS.gene074123:CDS |
| GGGATTATGGAAGAACAAAT+TGG | 0.418151 | 6.1:-6675580 | MS.gene074123:CDS |
| TATTTCTGTTTCGGTGCACC+TGG | 0.423063 | 6.1:-6673628 | MS.gene074123:CDS |
| AAGAATTCTTTGATCAAGTC+AGG | 0.426379 | 6.1:-6675814 | MS.gene074123:CDS |
| CTCAACATATGTGATGTTCA+TGG | 0.426668 | 6.1:-6674474 | MS.gene074123:CDS |
| GCACTTCATATGGCGATCAT+AGG | 0.427951 | 6.1:-6674549 | MS.gene074123:CDS |
| TTCAACATGAAAGTGATTTG+TGG | 0.455488 | 6.1:+6674608 | None:intergenic |
| GATACTGACAATATTGTTGC+CGG | 0.455956 | 6.1:-6673745 | MS.gene074123:CDS |
| CATTTGAGAATGCAAAGTAT+TGG | 0.456293 | 6.1:-6674321 | MS.gene074123:CDS |
| TTTCGCGAACCAAGTCATAA+TGG | 0.466544 | 6.1:+6676001 | None:intergenic |
| GGTGTCTCATCATCATCATA+AGG | 0.466858 | 6.1:+6673697 | None:intergenic |
| ATCAAGAAATTGATCTCGGC+TGG | 0.470602 | 6.1:-6674393 | MS.gene074123:CDS |
| ATCAACATCAAGAACAATGA+TGG | 0.471584 | 6.1:-6674579 | MS.gene074123:CDS |
| TTCTGTTAGCAGGAAGTTGA+AGG | 0.474185 | 6.1:-6673656 | MS.gene074123:CDS |
| TACTAGCAAAAGGCCAAGTT+CGG | 0.475921 | 6.1:-6674124 | MS.gene074123:CDS |
| TAAGCCACAGCAACAAAACT+AGG | 0.476632 | 6.1:+6673577 | None:intergenic |
| CCACTTCCAGACGCCTGATT+CGG | 0.478800 | 6.1:+6675932 | None:intergenic |
| TTAAGAGAAATTCTGTTAGC+AGG | 0.479529 | 6.1:-6673666 | MS.gene074123:CDS |
| AATTCCTTCTGCTTATAGGT+TGG | 0.479925 | 6.1:-6675554 | MS.gene074123:CDS |
| CCGAATCAGGCGTCTGGAAG+TGG | 0.484422 | 6.1:-6675932 | MS.gene074123:CDS |
| GCTGCATAATTAACCGAACT+TGG | 0.496926 | 6.1:+6674111 | None:intergenic |
| CCGAGATTTGTTACTAGTAG+AGG | 0.499878 | 6.1:-6675604 | MS.gene074123:CDS |
| TGGAAGAACAGCACTTCATA+TGG | 0.499937 | 6.1:-6674559 | MS.gene074123:CDS |
| TTGAACAAAGTTGAAGTCTC+CGG | 0.501107 | 6.1:+6675756 | None:intergenic |
| CCTACGCCGAATCAGGCGTC+TGG | 0.501158 | 6.1:-6675938 | MS.gene074123:CDS |
| GGAAACCAGAAACAGCTTTG+TGG | 0.501197 | 6.1:+6674688 | None:intergenic |
| ATGTACACGGCTGCATCAGC+CGG | 0.503217 | 6.1:-6675775 | MS.gene074123:CDS |
| TTGCATGCAGCTGCAGCAAG+AGG | 0.504480 | 6.1:-6675409 | MS.gene074123:CDS |
| TTTCTATGAGAGATTAATGT+CGG | 0.504636 | 6.1:+6674732 | None:intergenic |
| TTTGATCAAGAAATTGATCT+CGG | 0.506047 | 6.1:-6674397 | MS.gene074123:CDS |
| TTAGCTGCGGCCCAGTCTAT+CGG | 0.509386 | 6.1:+6676027 | None:intergenic |
| TTGATTCAAGCAAGATGGTC+CGG | 0.513144 | 6.1:+6673726 | None:intergenic |
| AAGATTTGAAATTTCGTGCC+GGG | 0.519401 | 6.1:+6674291 | None:intergenic |
| CCTCTTCGTTGGGAGAGTAC+CGG | 0.521829 | 6.1:-6676072 | MS.gene074123:CDS |
| TCTTTGATCAAGTCAGGCTA+TGG | 0.530610 | 6.1:-6675808 | MS.gene074123:CDS |
| CAGACGCCTGATTCGGCGTA+GGG | 0.533144 | 6.1:+6675939 | None:intergenic |
| AACGAGTAATTCATCTTCAT+CGG | 0.533622 | 6.1:-6674196 | MS.gene074123:CDS |
| TTGTTCAAATTCTTCTTGAG+AGG | 0.533631 | 6.1:-6675741 | MS.gene074123:CDS |
| AAGAAATTGATCTCGGCTGG+TGG | 0.541282 | 6.1:-6674390 | MS.gene074123:CDS |
| CAAAGTATTGGAAGTAGTCC+CGG | 0.542869 | 6.1:-6674309 | MS.gene074123:CDS |
| TGCATACCACCATTGGTCTC+CGG | 0.543909 | 6.1:+6676053 | None:intergenic |
| TTGATCAAGTCAGGCTATGG+TGG | 0.545204 | 6.1:-6675805 | MS.gene074123:CDS |
| TTGGCTTATAGAGATGCTGA+TGG | 0.546563 | 6.1:-6675442 | MS.gene074123:CDS |
| CAGTTTCAACTACTAGCAAA+AGG | 0.547071 | 6.1:-6674134 | MS.gene074123:CDS |
| ATCTCTCATAGAAACAATGC+AGG | 0.547624 | 6.1:-6674723 | MS.gene074123:CDS |
| AGCTAACGGCCATTATGACT+TGG | 0.551217 | 6.1:-6676010 | MS.gene074123:CDS |
| TCGGTGATGCATACCACCAT+TGG | 0.552506 | 6.1:+6676046 | None:intergenic |
| CAGGCGTCTGGAAGTGGTGT+GGG | 0.553479 | 6.1:-6675926 | MS.gene074123:CDS |
| ATAGACTGGGCCGCAGCTAA+CGG | 0.556785 | 6.1:-6676024 | MS.gene074123:CDS |
| GCTGTTCATGCTGCTGCTAG+AGG | 0.556808 | 6.1:-6675517 | MS.gene074123:CDS |
| CAACGAAGAGGAAAATTCGT+TGG | 0.558411 | 6.1:+6676084 | None:intergenic |
| AGATTTGTTACTAGTAGAGG+TGG | 0.558929 | 6.1:-6675601 | MS.gene074123:CDS |
| ATCAACTCAACAGATGATCA+AGG | 0.560248 | 6.1:-6674825 | MS.gene074123:CDS |
| CGAAGAGGAAAATTCGTTGG+AGG | 0.562641 | 6.1:+6676087 | None:intergenic |
| CCTCTACTAGTAACAAATCT+CGG | 0.573120 | 6.1:+6675604 | None:intergenic |
| TCAAGTCAGGCTATGGTGGA+TGG | 0.580199 | 6.1:-6675801 | MS.gene074123:CDS |
| CCAGACGCCTGATTCGGCGT+AGG | 0.584492 | 6.1:+6675938 | None:intergenic |
| GTCATAATGGCCGTTAGCTG+CGG | 0.586447 | 6.1:+6676014 | None:intergenic |
| TGTTGAGTTGATTATGTCAA+AGG | 0.589413 | 6.1:+6674836 | None:intergenic |
| TAAGATTTGAAATTTCGTGC+CGG | 0.591666 | 6.1:+6674290 | None:intergenic |
| ATTTCCAACCTATAAGCAGA+AGG | 0.601013 | 6.1:+6675550 | None:intergenic |
| GATTTGTTACTAGTAGAGGT+GGG | 0.601343 | 6.1:-6675600 | MS.gene074123:CDS |
| GTATGCATCACCGATAGACT+GGG | 0.601679 | 6.1:-6676037 | MS.gene074123:CDS |
| ATATACTTTATGCTGCTGCT+AGG | 0.602966 | 6.1:-6675675 | MS.gene074123:CDS |
| TCAGGCGTCTGGAAGTGGTG+TGG | 0.609880 | 6.1:-6675927 | MS.gene074123:CDS |
| TCTGTTAGCAGGAAGTTGAA+GGG | 0.611806 | 6.1:-6673655 | MS.gene074123:CDS |
| AGTCGTTGATTCAAGCAAGA+TGG | 0.618755 | 6.1:+6673721 | None:intergenic |
| CCTTCACCGAAAACCAACAA+AGG | 0.619616 | 6.1:+6675715 | None:intergenic |
| TGGTGGATGGCTAATGTACA+CGG | 0.625072 | 6.1:-6675788 | MS.gene074123:CDS |
| TTATGTCAAAGGATGATGCT+AGG | 0.625607 | 6.1:+6674847 | None:intergenic |
| GGGAGAGTACCGGAGACCAA+TGG | 0.632098 | 6.1:-6676062 | MS.gene074123:CDS |
| TTACATGTAGCTGCTTCGAG+AGG | 0.644456 | 6.1:-6674792 | MS.gene074123:CDS |
| CCGGTACTCTCCCAACGAAG+AGG | 0.644487 | 6.1:+6676072 | None:intergenic |
| TGCAGCAAGAGGGAAAGTTG+AGG | 0.645161 | 6.1:-6675398 | MS.gene074123:intron |
| TGCATGCAGCTGCAGCAAGA+GGG | 0.645560 | 6.1:-6675408 | MS.gene074123:CDS |
| GTTCATGCTGCTGCTAGAGG+TGG | 0.645816 | 6.1:-6675514 | MS.gene074123:CDS |
| CATATGTTGAGATTTATGAA+AGG | 0.646086 | 6.1:+6674486 | None:intergenic |
| TTATCAAATCATCATCGTGG+TGG | 0.649333 | 6.1:-6674228 | MS.gene074123:CDS |
| GAATTCTTCACATTAAGACC+AGG | 0.666200 | 6.1:+6673610 | None:intergenic |
| AGAGTACCGGAGACCAATGG+TGG | 0.671627 | 6.1:-6676059 | MS.gene074123:CDS |
| GTATTATCAAATCATCATCG+TGG | 0.742954 | 6.1:-6674231 | MS.gene074123:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTATAAAGTTTTGTT+TGG | - | chr6.1:6674338-6674357 | MS.gene074123:CDS | 15.0% |
| !! | GTAATATCGTAATCAAATTA+AGG | - | chr6.1:6674492-6674511 | MS.gene074123:CDS | 20.0% |
| !!! | AATTCAACATAGATGAATTT+TGG | - | chr6.1:6674430-6674449 | MS.gene074123:CDS | 20.0% |
| !!! | ATGAATTAGGATTTTGTTTA+AGG | + | chr6.1:6675236-6675255 | None:intergenic | 20.0% |
| !!! | TCAATTGATAATAAGCAAAA+AGG | - | chr6.1:6675888-6675907 | MS.gene074123:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr6.1:6674624-6674643 | None:intergenic | 20.0% |
| ! | ATATCTGAATTCGATGAATT+AGG | + | chr6.1:6675249-6675268 | None:intergenic | 25.0% |
| ! | ATCCAATGAAATTTCATCAT+TGG | + | chr6.1:6675655-6675674 | None:intergenic | 25.0% |
| ! | ATCCAATGATGAAATTTCAT+TGG | - | chr6.1:6675650-6675669 | MS.gene074123:CDS | 25.0% |
| ! | CATATGTTGAGATTTATGAA+AGG | + | chr6.1:6675183-6675202 | None:intergenic | 25.0% |
| ! | TCTCTTATAGTAAAGTAGTA+TGG | - | chr6.1:6674295-6674314 | MS.gene074123:CDS | 25.0% |
| ! | TGCTTATTATCAATTGATCT+AGG | + | chr6.1:6675885-6675904 | None:intergenic | 25.0% |
| ! | TTTCTATGAGAGATTAATGT+CGG | + | chr6.1:6674937-6674956 | None:intergenic | 25.0% |
| ! | TTTGATCAAGAAATTGATCT+CGG | - | chr6.1:6675269-6675288 | MS.gene074123:intron | 25.0% |
| !! | AAACTGTTCTGATGATATTT+TGG | - | chr6.1:6674205-6674224 | MS.gene074123:CDS | 25.0% |
| !! | ACTTAGACAAAGATTTTCTT+CGG | - | chr6.1:6675722-6675741 | MS.gene074123:CDS | 25.0% |
| !! | CTTTCAATTTTCTTCTCTTT+TGG | + | chr6.1:6675618-6675637 | None:intergenic | 25.0% |
| !! | GAATTTCTCTTAACCAATTT+TGG | + | chr6.1:6675993-6676012 | None:intergenic | 25.0% |
| !! | TGATAATACATTTTCGATTC+CGG | + | chr6.1:6675424-6675443 | None:intergenic | 25.0% |
| !! | TGGTAATTTGAAGATTTTAG+AGG | - | chr6.1:6674172-6674191 | MS.gene074123:CDS | 25.0% |
| !!! | AGTGAAATATTTTTGTACAC+CGG | - | chr6.1:6675402-6675421 | MS.gene074123:CDS | 25.0% |
| !!! | TAAGGTTTTAAAGAATAGAC+CGG | - | chr6.1:6674510-6674529 | MS.gene074123:CDS | 25.0% |
| !!! | TTTTCATTGGTTGATTCATA+TGG | + | chr6.1:6675504-6675523 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAAGGTAATCAAG+TGG | + | chr6.1:6675225-6675244 | None:intergenic | 25.0% |
| AACGAGTAATTCATCTTCAT+CGG | - | chr6.1:6675470-6675489 | MS.gene074123:CDS | 30.0% | |
| AAGAATTCTTTGATCAAGTC+AGG | - | chr6.1:6673852-6673871 | MS.gene074123:CDS | 30.0% | |
| ACAAAAGAACACTTTCTGTT+AGG | - | chr6.1:6675772-6675791 | MS.gene074123:CDS | 30.0% | |
| ATCAACATCAAGAACAATGA+TGG | - | chr6.1:6675087-6675106 | MS.gene074123:intron | 30.0% | |
| CAAAGAATTCTTCGATTTCT+TGG | + | chr6.1:6673844-6673863 | None:intergenic | 30.0% | |
| CATTTGAGAATGCAAAGTAT+TGG | - | chr6.1:6675345-6675364 | MS.gene074123:intron | 30.0% | |
| GTATTATCAAATCATCATCG+TGG | - | chr6.1:6675435-6675454 | MS.gene074123:CDS | 30.0% | |
| TTAAGAGAAATTCTGTTAGC+AGG | - | chr6.1:6676000-6676019 | MS.gene074123:CDS | 30.0% | |
| TTCAACATGAAAGTGATTTG+TGG | + | chr6.1:6675061-6675080 | None:intergenic | 30.0% | |
| TTCAGTGTAATTATGTGTGT+CGG | - | chr6.1:6674649-6674668 | MS.gene074123:CDS | 30.0% | |
| TTGTTCAAATTCTTCTTGAG+AGG | - | chr6.1:6673925-6673944 | MS.gene074123:CDS | 30.0% | |
| ! | AACTGGGATAGAATTTTCAT+TGG | + | chr6.1:6675517-6675536 | None:intergenic | 30.0% |
| ! | TAAGATTTGAAATTTCGTGC+CGG | + | chr6.1:6675379-6675398 | None:intergenic | 30.0% |
| ! | TTTTGCTAGTAGTTGAAACT+GGG | + | chr6.1:6675533-6675552 | None:intergenic | 30.0% |
| !! | AACATAGATGAATTTTGGTG+TGG | - | chr6.1:6674435-6674454 | MS.gene074123:CDS | 30.0% |
| !! | AAGGGTCATTATTTCTGTTT+CGG | - | chr6.1:6676029-6676048 | MS.gene074123:CDS | 30.0% |
| !! | AGTTGAAAAAAGCACTTCAT+TGG | - | chr6.1:6675583-6675602 | MS.gene074123:CDS | 30.0% |
| !! | TGTTGAGTTGATTATGTCAA+AGG | + | chr6.1:6674833-6674852 | None:intergenic | 30.0% |
| !!! | GAAAGTGTTCTTTTGTTGTT+TGG | + | chr6.1:6675768-6675787 | None:intergenic | 30.0% |
| AATTCCTTCTGCTTATAGGT+TGG | - | chr6.1:6674112-6674131 | MS.gene074123:CDS | 35.0% | |
| ATATACTTTATGCTGCTGCT+AGG | - | chr6.1:6673991-6674010 | MS.gene074123:CDS | 35.0% | |
| ATCAACTCAACAGATGATCA+AGG | - | chr6.1:6674841-6674860 | MS.gene074123:CDS | 35.0% | |
| ATCTCTCATAGAAACAATGC+AGG | - | chr6.1:6674943-6674962 | MS.gene074123:intron | 35.0% | |
| ATTTCCAACCTATAAGCAGA+AGG | + | chr6.1:6674119-6674138 | None:intergenic | 35.0% | |
| CAGTTTCAACTACTAGCAAA+AGG | - | chr6.1:6675532-6675551 | MS.gene074123:CDS | 35.0% | |
| CCTCTACTAGTAACAAATCT+CGG | + | chr6.1:6674065-6674084 | None:intergenic | 35.0% | |
| CTCAACATATGTGATGTTCA+TGG | - | chr6.1:6675192-6675211 | MS.gene074123:intron | 35.0% | |
| GAATTCTTCACATTAAGACC+AGG | + | chr6.1:6676059-6676078 | None:intergenic | 35.0% | |
| GAGCATTAACTGCTGATAAT+TGG | + | chr6.1:6674900-6674919 | None:intergenic | 35.0% | |
| GATACTGACAATATTGTTGC+CGG | - | chr6.1:6675921-6675940 | MS.gene074123:CDS | 35.0% | |
| GCAAATCTCTTCTTTGCATT+AGG | + | chr6.1:6675813-6675832 | None:intergenic | 35.0% | |
| GGGATTATGGAAGAACAAAT+TGG | - | chr6.1:6674086-6674105 | MS.gene074123:CDS | 35.0% | |
| GTGAAATTCCTTCTGCTTAT+AGG | - | chr6.1:6674108-6674127 | MS.gene074123:CDS | 35.0% | |
| GTTCATGAATCTCAAAATGC+AGG | - | chr6.1:6674786-6674805 | MS.gene074123:CDS | 35.0% | |
| TACAGTCTATTTGAGTCTCA+TGG | - | chr6.1:6674751-6674770 | MS.gene074123:CDS | 35.0% | |
| TTATCAAATCATCATCGTGG+TGG | - | chr6.1:6675438-6675457 | MS.gene074123:CDS | 35.0% | |
| TTATGTCAAAGGATGATGCT+AGG | + | chr6.1:6674822-6674841 | None:intergenic | 35.0% | |
| TTGAACAAAGTTGAAGTCTC+CGG | + | chr6.1:6673913-6673932 | None:intergenic | 35.0% | |
| TTTGATATGAAGCACGGATA+CGG | - | chr6.1:6674564-6674583 | MS.gene074123:CDS | 35.0% | |
| ! | AACGAATTTTCCTCTTCGTT+GGG | - | chr6.1:6673584-6673603 | MS.gene074123:CDS | 35.0% |
| ! | AAGATTTGAAATTTCGTGCC+GGG | + | chr6.1:6675378-6675397 | None:intergenic | 35.0% |
| ! | CTTTTGCTAGTAGTTGAAAC+TGG | + | chr6.1:6675534-6675553 | None:intergenic | 35.0% |
| ! | TGATGATGAGACACCAAAAT+TGG | - | chr6.1:6675977-6675996 | MS.gene074123:CDS | 35.0% |
| !! | AGATTTGTTACTAGTAGAGG+TGG | - | chr6.1:6674065-6674084 | MS.gene074123:CDS | 35.0% |
| !! | GATTTGTTACTAGTAGAGGT+GGG | - | chr6.1:6674066-6674085 | MS.gene074123:CDS | 35.0% |
| !! | TTTTCAAAAGCTCGACTTGT+CGG | + | chr6.1:6675029-6675048 | None:intergenic | 35.0% |
| !!! | AGGAATCCTTTGTTGGTTTT+CGG | - | chr6.1:6673945-6673964 | MS.gene074123:CDS | 35.0% |
| !!! | TAAACCTAGTTTTGTTGCTG+TGG | - | chr6.1:6676085-6676104 | MS.gene074123:CDS | 35.0% |
| ACTGAGATCAAAGTGAAGCA+TGG | + | chr6.1:6674726-6674745 | None:intergenic | 40.0% | |
| ATCAAGAAATTGATCTCGGC+TGG | - | chr6.1:6675273-6675292 | MS.gene074123:intron | 40.0% | |
| CAACGAAGAGGAAAATTCGT+TGG | + | chr6.1:6673585-6673604 | None:intergenic | 40.0% | |
| CATGAATCTCAAAATGCAGG+TGG | - | chr6.1:6674789-6674808 | MS.gene074123:CDS | 40.0% | |
| GCTGCATAATTAACCGAACT+TGG | + | chr6.1:6675558-6675577 | None:intergenic | 40.0% | |
| GGTGTCTCATCATCATCATA+AGG | + | chr6.1:6675972-6675991 | None:intergenic | 40.0% | |
| GTCTTCGAAATGCATGAGTT+TGG | + | chr6.1:6675002-6675021 | None:intergenic | 40.0% | |
| TAAGCCACAGCAACAAAACT+AGG | + | chr6.1:6676092-6676111 | None:intergenic | 40.0% | |
| TACTAGCAAAAGGCCAAGTT+CGG | - | chr6.1:6675542-6675561 | MS.gene074123:CDS | 40.0% | |
| TACTAGTAGAGGTGGGATTA+TGG | - | chr6.1:6674073-6674092 | MS.gene074123:CDS | 40.0% | |
| TCTCAAATTATTAGCGGCGT+CGG | + | chr6.1:6674618-6674637 | None:intergenic | 40.0% | |
| TCTGTTAGCAGGAAGTTGAA+GGG | - | chr6.1:6676011-6676030 | MS.gene074123:CDS | 40.0% | |
| TCTTGAGAGGAATCCTTTGT+TGG | - | chr6.1:6673938-6673957 | MS.gene074123:CDS | 40.0% | |
| TCTTTGATCAAGTCAGGCTA+TGG | - | chr6.1:6673858-6673877 | MS.gene074123:CDS | 40.0% | |
| TGGAAGAACAGCACTTCATA+TGG | - | chr6.1:6675107-6675126 | MS.gene074123:intron | 40.0% | |
| TTCTGTTAGCAGGAAGTTGA+AGG | - | chr6.1:6676010-6676029 | MS.gene074123:CDS | 40.0% | |
| TTGATTCAAGCAAGATGGTC+CGG | + | chr6.1:6675943-6675962 | None:intergenic | 40.0% | |
| TTGGCTTATAGAGATGCTGA+TGG | - | chr6.1:6674224-6674243 | MS.gene074123:CDS | 40.0% | |
| TTTCGCGAACCAAGTCATAA+TGG | + | chr6.1:6673668-6673687 | None:intergenic | 40.0% | |
| ! | CAACGAATTTTCCTCTTCGT+TGG | - | chr6.1:6673583-6673602 | MS.gene074123:CDS | 40.0% |
| ! | GTTTTCGGTGAAGGAGAATA+CGG | - | chr6.1:6673960-6673979 | MS.gene074123:CDS | 40.0% |
| ! | TTTCTCCACAAAGCTGTTTC+TGG | - | chr6.1:6674973-6674992 | MS.gene074123:intron | 40.0% |
| !! | AGTCGTTGATTCAAGCAAGA+TGG | + | chr6.1:6675948-6675967 | None:intergenic | 40.0% |
| !! | CAAAGTATTGGAAGTAGTCC+CGG | - | chr6.1:6675357-6675376 | MS.gene074123:intron | 40.0% |
| !! | CCGAGATTTGTTACTAGTAG+AGG | - | chr6.1:6674062-6674081 | MS.gene074123:CDS | 40.0% |
| !! | GGTTGGTTTGATATGAAGCA+CGG | - | chr6.1:6674558-6674577 | MS.gene074123:CDS | 40.0% |
| !!! | GGTGGAATGTTTGGTTTTAG+AGG | - | chr6.1:6675294-6675313 | MS.gene074123:intron | 40.0% |
| AAGAAATTGATCTCGGCTGG+TGG | - | chr6.1:6675276-6675295 | MS.gene074123:intron | 45.0% | |
| AGCTAACGGCCATTATGACT+TGG | - | chr6.1:6673656-6673675 | MS.gene074123:CDS | 45.0% | |
| CCTTCACCGAAAACCAACAA+AGG | + | chr6.1:6673954-6673973 | None:intergenic | 45.0% | |
| CGAAGAGGAAAATTCGTTGG+AGG | + | chr6.1:6673582-6673601 | None:intergenic | 45.0% | |
| GCACTTCATATGGCGATCAT+AGG | - | chr6.1:6675117-6675136 | MS.gene074123:intron | 45.0% | |
| GGAAACCAGAAACAGCTTTG+TGG | + | chr6.1:6674981-6675000 | None:intergenic | 45.0% | |
| GTATGCATCACCGATAGACT+GGG | - | chr6.1:6673629-6673648 | MS.gene074123:CDS | 45.0% | |
| TTACATGTAGCTGCTTCGAG+AGG | - | chr6.1:6674874-6674893 | MS.gene074123:intron | 45.0% | |
| TTGATCAAGTCAGGCTATGG+TGG | - | chr6.1:6673861-6673880 | MS.gene074123:CDS | 45.0% | |
| ! | CATCATCGTGGTGGAATTGT+TGG | - | chr6.1:6675447-6675466 | MS.gene074123:CDS | 45.0% |
| ! | TATTTCTGTTTCGGTGCACC+TGG | - | chr6.1:6676038-6676057 | MS.gene074123:CDS | 45.0% |
| ! | TGGTGGATGGCTAATGTACA+CGG | - | chr6.1:6673878-6673897 | MS.gene074123:CDS | 45.0% |
| !!! | CCTTTGTTGGTTTTCGGTGA+AGG | - | chr6.1:6673951-6673970 | MS.gene074123:CDS | 45.0% |
| ACCAGAAACCGGCTGTTTGT+CGG | - | chr6.1:6674537-6674556 | MS.gene074123:CDS | 50.0% | |
| AGACCGGTTGAACCAGAAAC+CGG | - | chr6.1:6674526-6674545 | MS.gene074123:CDS | 50.0% | |
| AGTGAAGCATGGACACTCCT+CGG | + | chr6.1:6674715-6674734 | None:intergenic | 50.0% | |
| ATACGGACACAGACACGACA+CGG | - | chr6.1:6674581-6674600 | MS.gene074123:CDS | 50.0% | |
| ATCTCGGCTGGTGGAATGTT+TGG | - | chr6.1:6675285-6675304 | MS.gene074123:intron | 50.0% | |
| CAAACCAACCGACAAACAGC+CGG | + | chr6.1:6674548-6674567 | None:intergenic | 50.0% | |
| GGTATGCATCACCGATAGAC+TGG | - | chr6.1:6673628-6673647 | MS.gene074123:CDS | 50.0% | |
| GTCATAATGGCCGTTAGCTG+CGG | + | chr6.1:6673655-6673674 | None:intergenic | 50.0% | |
| TCGGTGATGCATACCACCAT+TGG | + | chr6.1:6673623-6673642 | None:intergenic | 50.0% | |
| TGCAGCAAGAGGGAAAGTTG+AGG | - | chr6.1:6674268-6674287 | MS.gene074123:CDS | 50.0% | |
| ! | TCAAGTCAGGCTATGGTGGA+TGG | - | chr6.1:6673865-6673884 | MS.gene074123:CDS | 50.0% |
| ! | TGCATACCACCATTGGTCTC+CGG | + | chr6.1:6673616-6673635 | None:intergenic | 50.0% |
| !! | TATGTGTGTCGGTGTCGTGT+CGG | - | chr6.1:6674660-6674679 | MS.gene074123:CDS | 50.0% |
| ATAGACTGGGCCGCAGCTAA+CGG | - | chr6.1:6673642-6673661 | MS.gene074123:CDS | 55.0% | |
| ATGTACACGGCTGCATCAGC+CGG | - | chr6.1:6673891-6673910 | MS.gene074123:CDS | 55.0% | |
| CCACTTCCAGACGCCTGATT+CGG | + | chr6.1:6673737-6673756 | None:intergenic | 55.0% | |
| GAAACCGGCTGTTTGTCGGT+TGG | - | chr6.1:6674541-6674560 | MS.gene074123:CDS | 55.0% | |
| GCATGGACACTCCTCGGATT+AGG | + | chr6.1:6674709-6674728 | None:intergenic | 55.0% | |
| GCTGTTCATGCTGCTGCTAG+AGG | - | chr6.1:6674149-6674168 | MS.gene074123:CDS | 55.0% | |
| GTTCATGCTGCTGCTAGAGG+TGG | - | chr6.1:6674152-6674171 | MS.gene074123:CDS | 55.0% | |
| TCACTTCCCTACGCCGAATC+AGG | - | chr6.1:6673721-6673740 | MS.gene074123:CDS | 55.0% | |
| TGCATGCAGCTGCAGCAAGA+GGG | - | chr6.1:6674258-6674277 | MS.gene074123:CDS | 55.0% | |
| TTAGCTGCGGCCCAGTCTAT+CGG | + | chr6.1:6673642-6673661 | None:intergenic | 55.0% | |
| TTGCATGCAGCTGCAGCAAG+AGG | - | chr6.1:6674257-6674276 | MS.gene074123:CDS | 55.0% | |
| ! | ACCGACAAACAGCCGGTTTC+TGG | + | chr6.1:6674541-6674560 | None:intergenic | 55.0% |
| ! | CCTCTTCGTTGGGAGAGTAC+CGG | - | chr6.1:6673594-6673613 | MS.gene074123:CDS | 55.0% |
| !! | AGAGTACCGGAGACCAATGG+TGG | - | chr6.1:6673607-6673626 | MS.gene074123:CDS | 55.0% |
| !! | CAGCCGGTTTCTGGTTCAAC+CGG | + | chr6.1:6674532-6674551 | None:intergenic | 55.0% |
| CAGGCGTCTGGAAGTGGTGT+GGG | - | chr6.1:6673740-6673759 | MS.gene074123:CDS | 60.0% | |
| CCGAATCAGGCGTCTGGAAG+TGG | - | chr6.1:6673734-6673753 | MS.gene074123:CDS | 60.0% | |
| CCGGTACTCTCCCAACGAAG+AGG | + | chr6.1:6673597-6673616 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCCGTGT+CGG | + | chr6.1:6674693-6674712 | None:intergenic | 60.0% | |
| TCAGGCGTCTGGAAGTGGTG+TGG | - | chr6.1:6673739-6673758 | MS.gene074123:CDS | 60.0% | |
| TGTCGGTACGTGTCCGACAC+GGG | - | chr6.1:6674677-6674696 | MS.gene074123:CDS | 60.0% | |
| ! | GTGTCGGTACGTGTCCGACA+CGG | - | chr6.1:6674676-6674695 | MS.gene074123:CDS | 60.0% |
| !! | CAGACGCCTGATTCGGCGTA+GGG | + | chr6.1:6673730-6673749 | None:intergenic | 60.0% |
| !! | GGGAGAGTACCGGAGACCAA+TGG | - | chr6.1:6673604-6673623 | MS.gene074123:CDS | 60.0% |
| ACGGGGACACGCCTAATCCG+AGG | - | chr6.1:6674695-6674714 | MS.gene074123:CDS | 65.0% | |
| CCTACGCCGAATCAGGCGTC+TGG | - | chr6.1:6673728-6673747 | MS.gene074123:CDS | 65.0% | |
| GTCGGTACGTGTCCGACACG+GGG | - | chr6.1:6674678-6674697 | MS.gene074123:CDS | 65.0% | |
| !! | CCAGACGCCTGATTCGGCGT+AGG | + | chr6.1:6673731-6673750 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 6673576 | 6676112 | 6673576 | ID=MS.gene074123 |
| chr6.1 | mRNA | 6673576 | 6676112 | 6673576 | ID=MS.gene074123.t1;Parent=MS.gene074123 |
| chr6.1 | exon | 6675399 | 6676112 | 6675399 | ID=MS.gene074123.t1.exon1;Parent=MS.gene074123.t1 |
| chr6.1 | CDS | 6675399 | 6676112 | 6675399 | ID=cds.MS.gene074123.t1;Parent=MS.gene074123.t1 |
| chr6.1 | exon | 6673576 | 6674880 | 6673576 | ID=MS.gene074123.t1.exon2;Parent=MS.gene074123.t1 |
| chr6.1 | CDS | 6673576 | 6674880 | 6673576 | ID=cds.MS.gene074123.t1;Parent=MS.gene074123.t1 |
| Gene Sequence |
| Protein sequence |
