Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55470.t1 | XP_013451394.1 | 98.1 | 672 | 13 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1203 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55470.t1 | A0A072U6R4 | 98.1 | 672 | 13 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1203.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049382 | MS.gene55470 | 0.805168 | 1.52E-49 | -1.69E-46 |
MS.gene049501 | MS.gene55470 | 0.802385 | 5.75E-49 | -1.69E-46 |
MS.gene049850 | MS.gene55470 | 0.80628 | 8.88E-50 | -1.69E-46 |
MS.gene050020 | MS.gene55470 | 0.818172 | 2.25E-52 | -1.69E-46 |
MS.gene050438 | MS.gene55470 | 0.812225 | 4.72E-51 | -1.69E-46 |
MS.gene050586 | MS.gene55470 | 0.813645 | 2.30E-51 | -1.69E-46 |
MS.gene050719 | MS.gene55470 | 0.811988 | 5.32E-51 | -1.69E-46 |
MS.gene050721 | MS.gene55470 | 0.808914 | 2.45E-50 | -1.69E-46 |
MS.gene050780 | MS.gene55470 | 0.808711 | 2.71E-50 | -1.69E-46 |
MS.gene050807 | MS.gene55470 | 0.854511 | 1.17E-61 | -1.69E-46 |
MS.gene050808 | MS.gene55470 | 0.827621 | 1.41E-54 | -1.69E-46 |
MS.gene050815 | MS.gene55470 | 0.808942 | 2.42E-50 | -1.69E-46 |
MS.gene050959 | MS.gene55470 | 0.824182 | 9.27E-54 | -1.69E-46 |
MS.gene051180 | MS.gene55470 | 0.801923 | 7.16E-49 | -1.69E-46 |
MS.gene051247 | MS.gene55470 | 0.84039 | 8.95E-58 | -1.69E-46 |
MS.gene051265 | MS.gene55470 | 0.843855 | 1.08E-58 | -1.69E-46 |
MS.gene051719 | MS.gene55470 | 0.83088 | 2.29E-55 | -1.69E-46 |
MS.gene051720 | MS.gene55470 | 0.82448 | 7.89E-54 | -1.69E-46 |
MS.gene051789 | MS.gene55470 | 0.815814 | 7.62E-52 | -1.69E-46 |
MS.gene052020 | MS.gene55470 | 0.832371 | 9.82E-56 | -1.69E-46 |
MS.gene052376 | MS.gene55470 | 0.800041 | 1.74E-48 | -1.69E-46 |
MS.gene052516 | MS.gene55470 | 0.80267 | 5.03E-49 | -1.69E-46 |
MS.gene052611 | MS.gene55470 | 0.811817 | 5.79E-51 | -1.69E-46 |
MS.gene052613 | MS.gene55470 | 0.828464 | 8.86E-55 | -1.69E-46 |
MS.gene052665 | MS.gene55470 | 0.836833 | 7.42E-57 | -1.69E-46 |
MS.gene052863 | MS.gene55470 | 0.807288 | 5.44E-50 | -1.69E-46 |
MS.gene052896 | MS.gene55470 | 0.823343 | 1.46E-53 | -1.69E-46 |
MS.gene053074 | MS.gene55470 | 0.826056 | 3.34E-54 | -1.69E-46 |
MS.gene053630 | MS.gene55470 | 0.813268 | 2.79E-51 | -1.69E-46 |
MS.gene054467 | MS.gene55470 | 0.805429 | 1.34E-49 | -1.69E-46 |
MS.gene054472 | MS.gene55470 | 0.820502 | 6.63E-53 | -1.69E-46 |
MS.gene05468 | MS.gene55470 | 0.834552 | 2.81E-56 | -1.69E-46 |
MS.gene055357 | MS.gene55470 | 0.809744 | 1.63E-50 | -1.69E-46 |
MS.gene055358 | MS.gene55470 | 0.803098 | 4.10E-49 | -1.69E-46 |
MS.gene055465 | MS.gene55470 | 0.822531 | 2.25E-53 | -1.69E-46 |
MS.gene055466 | MS.gene55470 | 0.825621 | 4.24E-54 | -1.69E-46 |
MS.gene055468 | MS.gene55470 | 0.813143 | 2.97E-51 | -1.69E-46 |
MS.gene055469 | MS.gene55470 | 0.804895 | 1.73E-49 | -1.69E-46 |
MS.gene055608 | MS.gene55470 | 0.809269 | 2.06E-50 | -1.69E-46 |
MS.gene055818 | MS.gene55470 | 0.81793 | 2.55E-52 | -1.69E-46 |
MS.gene05604 | MS.gene55470 | 0.800789 | 1.22E-48 | -1.69E-46 |
MS.gene056069 | MS.gene55470 | -0.820971 | 5.17E-53 | -1.69E-46 |
MS.gene056553 | MS.gene55470 | 0.817001 | 4.14E-52 | -1.69E-46 |
MS.gene057915 | MS.gene55470 | 0.804848 | 1.77E-49 | -1.69E-46 |
MS.gene058168 | MS.gene55470 | 0.860807 | 1.60E-63 | -1.69E-46 |
MS.gene058625 | MS.gene55470 | 0.806519 | 7.91E-50 | -1.69E-46 |
MS.gene058906 | MS.gene55470 | 0.823426 | 1.39E-53 | -1.69E-46 |
MS.gene059006 | MS.gene55470 | 0.810076 | 1.38E-50 | -1.69E-46 |
MS.gene059124 | MS.gene55470 | 0.811432 | 7.02E-51 | -1.69E-46 |
MS.gene059713 | MS.gene55470 | 0.804326 | 2.28E-49 | -1.69E-46 |
MS.gene060137 | MS.gene55470 | -0.805834 | 1.10E-49 | -1.69E-46 |
MS.gene060322 | MS.gene55470 | 0.805837 | 1.10E-49 | -1.69E-46 |
MS.gene060404 | MS.gene55470 | 0.806504 | 7.97E-50 | -1.69E-46 |
MS.gene060998 | MS.gene55470 | 0.811593 | 6.48E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063697 | MS.gene55470 | PPI |
MS.gene72164 | MS.gene55470 | PPI |
MS.gene070324 | MS.gene55470 | PPI |
MS.gene55470 | MS.gene044767 | PPI |
MS.gene048788 | MS.gene55470 | PPI |
MS.gene55470 | MS.gene98602 | PPI |
MS.gene072797 | MS.gene55470 | PPI |
MS.gene015696 | MS.gene55470 | PPI |
MS.gene030419 | MS.gene55470 | PPI |
MS.gene056264 | MS.gene55470 | PPI |
MS.gene88176 | MS.gene55470 | PPI |
MS.gene55470 | MS.gene050373 | PPI |
MS.gene044769 | MS.gene55470 | PPI |
MS.gene55470 | MS.gene98667 | PPI |
MS.gene020478 | MS.gene55470 | PPI |
MS.gene015567 | MS.gene55470 | PPI |
MS.gene55470 | MS.gene88178 | PPI |
MS.gene55470 | MS.gene91166 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55470.t1 | MTR_6g022830 | 97.917 | 672 | 14 | 0 | 1 | 672 | 1 | 672 | 0.0 | 1360 |
MS.gene55470.t1 | MTR_6g023070 | 95.545 | 606 | 16 | 1 | 67 | 672 | 15 | 609 | 0.0 | 1176 |
MS.gene55470.t1 | MTR_8g080080 | 49.399 | 666 | 297 | 17 | 1 | 656 | 1 | 636 | 0.0 | 553 |
MS.gene55470.t1 | MTR_3g085830 | 46.522 | 690 | 300 | 18 | 1 | 662 | 1 | 649 | 0.0 | 535 |
MS.gene55470.t1 | MTR_7g117620 | 29.904 | 311 | 176 | 10 | 75 | 379 | 17 | 291 | 9.49e-17 | 84.3 |
MS.gene55470.t1 | MTR_4g062100 | 31.220 | 205 | 120 | 6 | 192 | 393 | 108 | 294 | 3.93e-16 | 82.4 |
MS.gene55470.t1 | MTR_7g100390 | 31.746 | 189 | 111 | 6 | 192 | 378 | 52 | 224 | 2.19e-12 | 70.5 |
MS.gene55470.t1 | MTR_2g096190 | 26.071 | 280 | 175 | 9 | 21 | 298 | 29 | 278 | 2.69e-12 | 70.1 |
MS.gene55470.t1 | MTR_2g096190 | 29.302 | 215 | 132 | 5 | 102 | 315 | 66 | 261 | 1.32e-11 | 68.2 |
MS.gene55470.t1 | MTR_2g096190 | 28.708 | 209 | 128 | 6 | 193 | 395 | 31 | 224 | 3.92e-11 | 66.6 |
MS.gene55470.t1 | MTR_1g032100 | 27.985 | 268 | 138 | 8 | 174 | 402 | 37 | 288 | 2.27e-11 | 67.4 |
MS.gene55470.t1 | MTR_2g101310 | 27.143 | 210 | 138 | 5 | 194 | 402 | 143 | 338 | 4.91e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55470.t1 | AT3G01750 | 53.698 | 676 | 278 | 16 | 1 | 660 | 1 | 657 | 0.0 | 631 |
MS.gene55470.t1 | AT3G01750 | 53.698 | 676 | 278 | 16 | 1 | 660 | 1 | 657 | 0.0 | 631 |
MS.gene55470.t1 | AT3G04140 | 42.940 | 687 | 311 | 19 | 1 | 662 | 1 | 631 | 1.06e-157 | 470 |
MS.gene55470.t1 | AT5G60070 | 31.140 | 228 | 122 | 8 | 194 | 415 | 113 | 311 | 1.59e-14 | 77.4 |
MS.gene55470.t1 | AT1G07710 | 34.211 | 190 | 105 | 7 | 192 | 378 | 69 | 241 | 1.84e-14 | 77.0 |
MS.gene55470.t1 | AT1G07710 | 29.870 | 231 | 134 | 7 | 175 | 395 | 80 | 292 | 9.83e-14 | 74.7 |
MS.gene55470.t1 | AT1G07710 | 34.211 | 190 | 105 | 7 | 192 | 378 | 69 | 241 | 1.84e-14 | 77.0 |
MS.gene55470.t1 | AT1G07710 | 29.870 | 231 | 134 | 7 | 175 | 395 | 80 | 292 | 9.83e-14 | 74.7 |
MS.gene55470.t1 | AT2G31820 | 30.846 | 201 | 122 | 5 | 194 | 393 | 229 | 413 | 3.16e-14 | 76.6 |
MS.gene55470.t1 | AT4G10720 | 30.279 | 251 | 153 | 11 | 161 | 396 | 1 | 244 | 3.51e-13 | 72.4 |
MS.gene55470.t1 | AT4G10720 | 30.279 | 251 | 153 | 11 | 161 | 396 | 1 | 244 | 6.35e-13 | 72.0 |
MS.gene55470.t1 | AT2G01680 | 26.736 | 288 | 184 | 8 | 192 | 473 | 97 | 363 | 2.16e-12 | 70.5 |
MS.gene55470.t1 | AT1G05640 | 30.000 | 230 | 132 | 8 | 162 | 378 | 115 | 328 | 3.13e-12 | 70.1 |
MS.gene55470.t1 | AT5G51160 | 29.231 | 195 | 121 | 6 | 221 | 410 | 44 | 226 | 2.56e-11 | 66.6 |
Find 102 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAGAATTCTTCGATTTCT+TGG | 0.161238 | 6.2:+16472981 | None:intergenic |
TTTCTCCACAAAGCTGTTTC+TGG | 0.173886 | 6.2:-16471807 | MS.gene55470:CDS |
AAATTGTTCTGATGATATTT+TGG | 0.217140 | 6.2:-16472617 | MS.gene55470:CDS |
GAGCATTAACCGCTGATAAT+TGG | 0.259457 | 6.2:+16471883 | None:intergenic |
TACAAGTAGAGGTGGGATTA+TGG | 0.277088 | 6.2:-16472749 | MS.gene55470:CDS |
GAATTTCTCTTAACCAATTT+CGG | 0.284326 | 6.2:+16470790 | None:intergenic |
GCAAATCTCTTCTTAGCATT+AGG | 0.284435 | 6.2:+16470970 | None:intergenic |
CAAATCTCTTCTTAGCATTA+GGG | 0.301052 | 6.2:+16470971 | None:intergenic |
ATCTCAGCTGGTGGAATGTT+TGG | 0.325494 | 6.2:-16471495 | MS.gene55470:CDS |
AAGGGTCATTATTTCTGTTT+CGG | 0.353990 | 6.2:-16470751 | MS.gene55470:CDS |
ATCCAATGATGAAGTTTCAT+TGG | 0.354015 | 6.2:-16471130 | MS.gene55470:CDS |
ACAAAAGAACACTTTCTGTT+AGG | 0.359130 | 6.2:-16471008 | MS.gene55470:CDS |
ATATCTGAATTCGATGAATT+CGG | 0.363865 | 6.2:+16471534 | None:intergenic |
TCTTGAGAGGAATCCTTTGT+TGG | 0.364285 | 6.2:-16472884 | MS.gene55470:CDS |
TGCTTATTATCAATTGATCT+AGG | 0.375333 | 6.2:+16470898 | None:intergenic |
AATTCCTTCTGCTTATAGAT+TGG | 0.379511 | 6.2:-16472710 | MS.gene55470:CDS |
TTTCTATGAGAGATTAATGT+TGG | 0.395639 | 6.2:+16471846 | None:intergenic |
CGACTTGTCGGTCAAGTCTT+CGG | 0.396104 | 6.2:+16471766 | None:intergenic |
GGTATGCATCACCGATAGAC+TGG | 0.404408 | 6.2:-16473194 | MS.gene55470:CDS |
TCACTTCCCTACGCCGAATC+AGG | 0.406153 | 6.2:-16473101 | MS.gene55470:CDS |
ATCAATTGATAATAAGCAAA+AGG | 0.410363 | 6.2:-16470893 | MS.gene55470:CDS |
GGGATTATGGAAGAAAATAT+TGG | 0.420058 | 6.2:-16472736 | MS.gene55470:CDS |
TGATGATGAGACACCGAAAT+TGG | 0.423038 | 6.2:-16470803 | MS.gene55470:CDS |
TATTTCTGTTTCGGTGCACC+TGG | 0.423063 | 6.2:-16470742 | MS.gene55470:CDS |
ATCCAATGAAACTTCATCAT+TGG | 0.426190 | 6.2:+16471128 | None:intergenic |
GATAATGACGATATTGTTGC+TGG | 0.426326 | 6.2:-16470859 | MS.gene55470:CDS |
AAGAATTCTTTGATCAAGTC+AGG | 0.426379 | 6.2:-16472970 | MS.gene55470:CDS |
CTCAACATATGTGATGTTCA+TGG | 0.426668 | 6.2:-16471588 | MS.gene55470:CDS |
CAACGAAGAGGAAAATTTGT+TGG | 0.433564 | 6.2:+16473240 | None:intergenic |
GCACTTCATATGGCAATCAT+AGG | 0.435629 | 6.2:-16471663 | MS.gene55470:CDS |
GCTGCATAGTTAACCGAACT+TGG | 0.447070 | 6.2:+16471225 | None:intergenic |
CATTTGAGAATGCAAAGTAT+TGG | 0.456293 | 6.2:-16471435 | MS.gene55470:CDS |
ATCAAGAAATTAATCTCAGC+TGG | 0.458322 | 6.2:-16471507 | MS.gene55470:CDS |
GAAAACCAGAAACAGCTTTG+TGG | 0.460960 | 6.2:+16471802 | None:intergenic |
TGGAAGAACAGCACTTCATA+TGG | 0.470812 | 6.2:-16471673 | MS.gene55470:CDS |
ATCAACATCAAGAACAATGA+TGG | 0.471584 | 6.2:-16471693 | MS.gene55470:CDS |
TTCTGTTAGCAGGAAGTTGA+AGG | 0.474185 | 6.2:-16470770 | MS.gene55470:CDS |
TACTAGCAAAAGGCCAAGTT+CGG | 0.475921 | 6.2:-16471238 | MS.gene55470:CDS |
TAAGCCACAGCAACAAAACT+AGG | 0.476632 | 6.2:+16470691 | None:intergenic |
CATCATCGTGGTGGAATCGC+TGG | 0.478284 | 6.2:-16471333 | MS.gene55470:CDS |
CCACTTCCAGACGCCTGATT+CGG | 0.478800 | 6.2:+16473088 | None:intergenic |
TTAAGAGAAATTCTGTTAGC+AGG | 0.479529 | 6.2:-16470780 | MS.gene55470:CDS |
CCGAATCAGGCGTCTGGAAG+TGG | 0.484422 | 6.2:-16473088 | MS.gene55470:CDS |
TCAATTGATAATAAGCAAAA+GGG | 0.495816 | 6.2:-16470892 | MS.gene55470:CDS |
CCGAGATTTGTTACAAGTAG+AGG | 0.499878 | 6.2:-16472760 | MS.gene55470:CDS |
TTGAACAAAGTTGAAGTCTC+CGG | 0.501107 | 6.2:+16472912 | None:intergenic |
CCTACGCCGAATCAGGCGTC+TGG | 0.501158 | 6.2:-16473094 | MS.gene55470:CDS |
ATGTACACGGCTGCATCAGC+CGG | 0.503217 | 6.2:-16472931 | MS.gene55470:CDS |
TTGCATGCAGCTGCTGCAAG+AGG | 0.513263 | 6.2:-16472565 | MS.gene55470:CDS |
AAGATTTGAAATTTCGTGCC+GGG | 0.519401 | 6.2:+16471405 | None:intergenic |
TTAGCTGCGGCCCAGTCTAT+CGG | 0.522230 | 6.2:+16473183 | None:intergenic |
CCTCTTCGTTGGGAGAGTAC+CGG | 0.524023 | 6.2:-16473228 | MS.gene55470:CDS |
CCTCTACTTGTAACAAATCT+CGG | 0.526442 | 6.2:+16472760 | None:intergenic |
GGTGTCTCATCATCATCATA+AGG | 0.528953 | 6.2:+16470811 | None:intergenic |
TCTTTGATCAAGTCAGGCTA+TGG | 0.530610 | 6.2:-16472964 | MS.gene55470:CDS |
TTTGTGGAGAAAAGTTTCTC+CGG | 0.530803 | 6.2:+16471818 | None:intergenic |
CGAAGAGGAAAATTTGTTGG+AGG | 0.532078 | 6.2:+16473243 | None:intergenic |
CAGACGCCTGATTCGGCGTA+GGG | 0.533144 | 6.2:+16473095 | None:intergenic |
TTGTTCAAATTCTTCTTGAG+AGG | 0.533631 | 6.2:-16472897 | MS.gene55470:CDS |
CAAAGTATTGGAAGTAGTCC+CGG | 0.542869 | 6.2:-16471423 | MS.gene55470:CDS |
TTGATCAAGTCAGGCTATGG+TGG | 0.545204 | 6.2:-16472961 | MS.gene55470:CDS |
TTGGCTTATAGAGATGCTGA+TGG | 0.546563 | 6.2:-16472598 | MS.gene55470:CDS |
TCGGTGATGCATACCACCAT+TGG | 0.546778 | 6.2:+16473202 | None:intergenic |
CAGTTTCAACTACTAGCAAA+AGG | 0.547071 | 6.2:-16471248 | MS.gene55470:CDS |
CAGGCGTCTGGAAGTGGTGT+GGG | 0.553479 | 6.2:-16473082 | MS.gene55470:CDS |
GCTGTTCATGCTGCTGCTAG+AGG | 0.556808 | 6.2:-16472673 | MS.gene55470:CDS |
AACAAGTAATTCATCGTCAT+CGG | 0.559773 | 6.2:-16471310 | MS.gene55470:CDS |
ATCAACTCAACAGATGATCA+AGG | 0.560248 | 6.2:-16471939 | MS.gene55470:CDS |
ATAGACTGGGCCGCAGCTAA+CGG | 0.569380 | 6.2:-16473180 | MS.gene55470:CDS |
TGCATACCACCATTGGTCAC+CGG | 0.578751 | 6.2:+16473209 | None:intergenic |
ATCTCCAATCTATAAGCAGA+AGG | 0.579542 | 6.2:+16472706 | None:intergenic |
AGATTTGTTACAAGTAGAGG+TGG | 0.579667 | 6.2:-16472757 | MS.gene55470:CDS |
TCAAGTCAGGCTATGGTGGA+TGG | 0.580199 | 6.2:-16472957 | MS.gene55470:CDS |
CCAGACGCCTGATTCGGCGT+AGG | 0.584492 | 6.2:+16473094 | None:intergenic |
AGCTAACGGTCACTATGACT+TGG | 0.589392 | 6.2:-16473166 | MS.gene55470:CDS |
TGTTGAGTTGATTATGTCAA+AGG | 0.589413 | 6.2:+16471950 | None:intergenic |
TAAGATTTGAAATTTCGTGC+CGG | 0.591666 | 6.2:+16471404 | None:intergenic |
GGGAGAGTACCGGTGACCAA+TGG | 0.592124 | 6.2:-16473218 | MS.gene55470:CDS |
GATTTGTTACAAGTAGAGGT+GGG | 0.601343 | 6.2:-16472756 | MS.gene55470:CDS |
GTATGCATCACCGATAGACT+GGG | 0.601679 | 6.2:-16473193 | MS.gene55470:CDS |
ATATACTTTATGCTGCTGCT+AGG | 0.602966 | 6.2:-16472831 | MS.gene55470:CDS |
TTCTACATGAAAGTGATCTG+TGG | 0.604183 | 6.2:+16471722 | None:intergenic |
TCAGGCGTCTGGAAGTGGTG+TGG | 0.609880 | 6.2:-16473083 | MS.gene55470:CDS |
TCTGTTAGCAGGAAGTTGAA+GGG | 0.611806 | 6.2:-16470769 | MS.gene55470:CDS |
AAGAAATTAATCTCAGCTGG+TGG | 0.612186 | 6.2:-16471504 | MS.gene55470:CDS |
AGTCGTTGATTCAAGCAAGA+TGG | 0.618755 | 6.2:+16470835 | None:intergenic |
CCTTCACCGAAAACCAACAA+AGG | 0.619616 | 6.2:+16472871 | None:intergenic |
TGGTGGATGGCTAATGTACA+CGG | 0.625072 | 6.2:-16472944 | MS.gene55470:CDS |
TTATGTCAAAGGATGATGCT+AGG | 0.625607 | 6.2:+16471961 | None:intergenic |
TGCATGCAGCTGCTGCAAGA+GGG | 0.631749 | 6.2:-16472564 | MS.gene55470:CDS |
GTCATAGTGACCGTTAGCTG+CGG | 0.633314 | 6.2:+16473170 | None:intergenic |
ATCTCTCATAGAAACAACGC+CGG | 0.637369 | 6.2:-16471837 | MS.gene55470:CDS |
AGAGTACCGGTGACCAATGG+TGG | 0.638604 | 6.2:-16473215 | MS.gene55470:CDS |
TTACATGTAGCTGCTTCGAG+AGG | 0.644456 | 6.2:-16471906 | MS.gene55470:CDS |
CCGGTACTCTCCCAACGAAG+AGG | 0.645560 | 6.2:+16473228 | None:intergenic |
GTTCATGCTGCTGCTAGAGG+TGG | 0.645816 | 6.2:-16472670 | MS.gene55470:CDS |
CATATGTTGAGATTTATGAA+AGG | 0.646086 | 6.2:+16471600 | None:intergenic |
TTATCAAATCATCATCGTGG+TGG | 0.649333 | 6.2:-16471342 | MS.gene55470:CDS |
GAATTCTTCACATTAAGACC+AGG | 0.663718 | 6.2:+16470724 | None:intergenic |
TTCGAGAGGCCAATTATCAG+CGG | 0.663788 | 6.2:-16471892 | MS.gene55470:CDS |
TGCTGCAAGAGGGAAAGTTG+AGG | 0.683935 | 6.2:-16472554 | MS.gene55470:intron |
GTATTATCAAATCATCATCG+TGG | 0.742954 | 6.2:-16471345 | MS.gene55470:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAACCTTAATTTGATT+AGG | + | chr6.2:16471659-16471678 | None:intergenic | 15.0% |
!! | ACTATTATAGTAAAGTTGTA+TGG | - | chr6.2:16471450-16471469 | MS.gene55470:CDS | 20.0% |
!! | ATTCAACATAGATGAATATT+TGG | - | chr6.2:16471587-16471606 | MS.gene55470:CDS | 20.0% |
!! | GTAATATCCTAATCAAATTA+AGG | - | chr6.2:16471649-16471668 | MS.gene55470:CDS | 20.0% |
!!! | AAATTGTTCTGATGATATTT+TGG | - | chr6.2:16471319-16471338 | MS.gene55470:CDS | 20.0% |
!!! | ATCAATTGATAATAAGCAAA+AGG | - | chr6.2:16473043-16473062 | MS.gene55470:CDS | 20.0% |
!!! | TCAACTTATAAAGTTTTGTT+TGG | - | chr6.2:16471494-16471513 | MS.gene55470:CDS | 20.0% |
!!! | TCAATTGATAATAAGCAAAA+GGG | - | chr6.2:16473044-16473063 | MS.gene55470:CDS | 20.0% |
!!! | TGATAATACATTTTCAATTC+CGG | + | chr6.2:16472580-16472599 | None:intergenic | 20.0% |
!!! | TGATTTTCTCAAATTATTAG+CGG | + | chr6.2:16471782-16471801 | None:intergenic | 20.0% |
! | AATTCAGTGTAATTATGTGT+CGG | - | chr6.2:16471805-16471824 | MS.gene55470:CDS | 25.0% |
! | ATATCTGAATTCGATGAATT+CGG | + | chr6.2:16472405-16472424 | None:intergenic | 25.0% |
! | CATATGTTGAGATTTATGAA+AGG | + | chr6.2:16472339-16472358 | None:intergenic | 25.0% |
! | GAATTTCTCTTAACCAATTT+CGG | + | chr6.2:16473149-16473168 | None:intergenic | 25.0% |
! | TGCTTATTATCAATTGATCT+AGG | + | chr6.2:16473041-16473060 | None:intergenic | 25.0% |
! | TTTCTATGAGAGATTAATGT+TGG | + | chr6.2:16472093-16472112 | None:intergenic | 25.0% |
!! | CATATTTTTCTCTTTCACTT+TGG | - | chr6.2:16471420-16471439 | MS.gene55470:CDS | 25.0% |
!! | CTTTCAATTTTCTTCTCTTT+TGG | + | chr6.2:16472774-16472793 | None:intergenic | 25.0% |
!! | TGGTAATTTGAAGATTTTAG+AGG | - | chr6.2:16471286-16471305 | MS.gene55470:CDS | 25.0% |
!!! | AGTGAAATATTTTTGTACAC+CGG | - | chr6.2:16472558-16472577 | MS.gene55470:CDS | 25.0% |
!!! | ATGAATTCGGATTTTGTTTA+AGG | + | chr6.2:16472392-16472411 | None:intergenic | 25.0% |
!!! | TAAGGTTTTAAAGAATAGAC+CGG | - | chr6.2:16471667-16471686 | MS.gene55470:CDS | 25.0% |
!!! | TTTTCATTGGTTGATTCATA+TGG | + | chr6.2:16472660-16472679 | None:intergenic | 25.0% |
!!! | TTTTGTTTAAGGTAATCAAG+TGG | + | chr6.2:16472381-16472400 | None:intergenic | 25.0% |
AACAAGTAATTCATCGTCAT+CGG | - | chr6.2:16472626-16472645 | MS.gene55470:CDS | 30.0% | |
AAGAATTCTTTGATCAAGTC+AGG | - | chr6.2:16470966-16470985 | MS.gene55470:CDS | 30.0% | |
AATTCCTTCTGCTTATAGAT+TGG | - | chr6.2:16471226-16471245 | MS.gene55470:CDS | 30.0% | |
ACAAAAGAACACTTTCTGTT+AGG | - | chr6.2:16472928-16472947 | MS.gene55470:CDS | 30.0% | |
ATCAACATCAAGAACAATGA+TGG | - | chr6.2:16472243-16472262 | MS.gene55470:intron | 30.0% | |
ATCAAGAAATTAATCTCAGC+TGG | - | chr6.2:16472429-16472448 | MS.gene55470:intron | 30.0% | |
ATCCAATGAAACTTCATCAT+TGG | + | chr6.2:16472811-16472830 | None:intergenic | 30.0% | |
ATCCAATGATGAAGTTTCAT+TGG | - | chr6.2:16472806-16472825 | MS.gene55470:CDS | 30.0% | |
CAAAGAATTCTTCGATTTCT+TGG | + | chr6.2:16470958-16470977 | None:intergenic | 30.0% | |
CAAATCTCTTCTTAGCATTA+GGG | + | chr6.2:16472968-16472987 | None:intergenic | 30.0% | |
CATTTGAGAATGCAAAGTAT+TGG | - | chr6.2:16472501-16472520 | MS.gene55470:intron | 30.0% | |
GGGATTATGGAAGAAAATAT+TGG | - | chr6.2:16471200-16471219 | MS.gene55470:CDS | 30.0% | |
GTATTATCAAATCATCATCG+TGG | - | chr6.2:16472591-16472610 | MS.gene55470:CDS | 30.0% | |
TTAAGAGAAATTCTGTTAGC+AGG | - | chr6.2:16473156-16473175 | MS.gene55470:CDS | 30.0% | |
TTGTTCAAATTCTTCTTGAG+AGG | - | chr6.2:16471039-16471058 | MS.gene55470:CDS | 30.0% | |
! | AACAAATTTTCCTCTTCGTT+GGG | - | chr6.2:16470698-16470717 | MS.gene55470:CDS | 30.0% |
! | AACTGGGATAGTATTTTCAT+TGG | + | chr6.2:16472673-16472692 | None:intergenic | 30.0% |
! | ACATAGATGAATATTTGGTG+TGG | - | chr6.2:16471592-16471611 | MS.gene55470:CDS | 30.0% |
! | GCTTAGACAAAGATTTTCTT+CGG | - | chr6.2:16472878-16472897 | MS.gene55470:CDS | 30.0% |
! | TAAGATTTGAAATTTCGTGC+CGG | + | chr6.2:16472535-16472554 | None:intergenic | 30.0% |
! | TTTTGCTAGTAGTTGAAACT+GGG | + | chr6.2:16472689-16472708 | None:intergenic | 30.0% |
!! | AAGGGTCATTATTTCTGTTT+CGG | - | chr6.2:16473185-16473204 | MS.gene55470:CDS | 30.0% |
!! | AGTTGAAAAAAGCACTTCAT+TGG | - | chr6.2:16472739-16472758 | MS.gene55470:CDS | 30.0% |
!! | TGTTGAGTTGATTATGTCAA+AGG | + | chr6.2:16471989-16472008 | None:intergenic | 30.0% |
!!! | GAAAGTGTTCTTTTGTTGTT+TGG | + | chr6.2:16472924-16472943 | None:intergenic | 30.0% |
AAGAAATTAATCTCAGCTGG+TGG | - | chr6.2:16472432-16472451 | MS.gene55470:intron | 35.0% | |
ATATACTTTATGCTGCTGCT+AGG | - | chr6.2:16471105-16471124 | MS.gene55470:CDS | 35.0% | |
ATCAACTCAACAGATGATCA+AGG | - | chr6.2:16471997-16472016 | MS.gene55470:intron | 35.0% | |
ATCTCCAATCTATAAGCAGA+AGG | + | chr6.2:16471233-16471252 | None:intergenic | 35.0% | |
CAACGAAGAGGAAAATTTGT+TGG | + | chr6.2:16470699-16470718 | None:intergenic | 35.0% | |
CAGTTTCAACTACTAGCAAA+AGG | - | chr6.2:16472688-16472707 | MS.gene55470:CDS | 35.0% | |
CCTCTACTTGTAACAAATCT+CGG | + | chr6.2:16471179-16471198 | None:intergenic | 35.0% | |
CTCAACATATGTGATGTTCA+TGG | - | chr6.2:16472348-16472367 | MS.gene55470:intron | 35.0% | |
GAATTCTTCACATTAAGACC+AGG | + | chr6.2:16473215-16473234 | None:intergenic | 35.0% | |
GATAATGACGATATTGTTGC+TGG | - | chr6.2:16473077-16473096 | MS.gene55470:CDS | 35.0% | |
GCAAATCTCTTCTTAGCATT+AGG | + | chr6.2:16472969-16472988 | None:intergenic | 35.0% | |
GTTCATGAATCTCAAAATGC+AGG | - | chr6.2:16471942-16471961 | MS.gene55470:CDS | 35.0% | |
TACAGTCTATTTGAGTCTCA+TGG | - | chr6.2:16471907-16471926 | MS.gene55470:CDS | 35.0% | |
TTATCAAATCATCATCGTGG+TGG | - | chr6.2:16472594-16472613 | MS.gene55470:CDS | 35.0% | |
TTATGTCAAAGGATGATGCT+AGG | + | chr6.2:16471978-16471997 | None:intergenic | 35.0% | |
TTCTACATGAAAGTGATCTG+TGG | + | chr6.2:16472217-16472236 | None:intergenic | 35.0% | |
TTGAACAAAGTTGAAGTCTC+CGG | + | chr6.2:16471027-16471046 | None:intergenic | 35.0% | |
TTTGATATGAAGCACGGATA+CGG | - | chr6.2:16471722-16471741 | MS.gene55470:CDS | 35.0% | |
TTTGTGGAGAAAAGTTTCTC+CGG | + | chr6.2:16472121-16472140 | None:intergenic | 35.0% | |
! | AAGATTTGAAATTTCGTGCC+GGG | + | chr6.2:16472534-16472553 | None:intergenic | 35.0% |
! | CAACAAATTTTCCTCTTCGT+TGG | - | chr6.2:16470697-16470716 | MS.gene55470:CDS | 35.0% |
! | CTTTTGCTAGTAGTTGAAAC+TGG | + | chr6.2:16472690-16472709 | None:intergenic | 35.0% |
!! | AGATTTGTTACAAGTAGAGG+TGG | - | chr6.2:16471179-16471198 | MS.gene55470:CDS | 35.0% |
!! | GATTTGTTACAAGTAGAGGT+GGG | - | chr6.2:16471180-16471199 | MS.gene55470:CDS | 35.0% |
!! | TTTTCAAAAGCTCGACTTGT+CGG | + | chr6.2:16472185-16472204 | None:intergenic | 35.0% |
!!! | AGGAATCCTTTGTTGGTTTT+CGG | - | chr6.2:16471059-16471078 | MS.gene55470:CDS | 35.0% |
!!! | GTGGAATGTTTGGTTTTAGA+GGG | - | chr6.2:16472451-16472470 | MS.gene55470:intron | 35.0% |
!!! | TAAACCTAGTTTTGTTGCTG+TGG | - | chr6.2:16473241-16473260 | MS.gene55470:CDS | 35.0% |
ACTGAGATCAAAGTGAAGCA+CGG | + | chr6.2:16471882-16471901 | None:intergenic | 40.0% | |
ATCTCTCATAGAAACAACGC+CGG | - | chr6.2:16472099-16472118 | MS.gene55470:intron | 40.0% | |
CATGAATCTCAAAATGCAGG+TGG | - | chr6.2:16471945-16471964 | MS.gene55470:CDS | 40.0% | |
GAAAACCAGAAACAGCTTTG+TGG | + | chr6.2:16472137-16472156 | None:intergenic | 40.0% | |
GAGCATTAACCGCTGATAAT+TGG | + | chr6.2:16472056-16472075 | None:intergenic | 40.0% | |
GCACTTCATATGGCAATCAT+AGG | - | chr6.2:16472273-16472292 | MS.gene55470:intron | 40.0% | |
GGTGTCTCATCATCATCATA+AGG | + | chr6.2:16473128-16473147 | None:intergenic | 40.0% | |
TAAGCCACAGCAACAAAACT+AGG | + | chr6.2:16473248-16473267 | None:intergenic | 40.0% | |
TACAAGTAGAGGTGGGATTA+TGG | - | chr6.2:16471187-16471206 | MS.gene55470:CDS | 40.0% | |
TACTAGCAAAAGGCCAAGTT+CGG | - | chr6.2:16472698-16472717 | MS.gene55470:CDS | 40.0% | |
TATCAAACCAACCGACAAAC+AGG | + | chr6.2:16471709-16471728 | None:intergenic | 40.0% | |
TCTCAAATTATTAGCGGCGT+CGG | + | chr6.2:16471776-16471795 | None:intergenic | 40.0% | |
TCTGTTAGCAGGAAGTTGAA+GGG | - | chr6.2:16473167-16473186 | MS.gene55470:CDS | 40.0% | |
TCTTGAGAGGAATCCTTTGT+TGG | - | chr6.2:16471052-16471071 | MS.gene55470:CDS | 40.0% | |
TCTTTGATCAAGTCAGGCTA+TGG | - | chr6.2:16470972-16470991 | MS.gene55470:CDS | 40.0% | |
TGGAAGAACAGCACTTCATA+TGG | - | chr6.2:16472263-16472282 | MS.gene55470:intron | 40.0% | |
TTCTGTTAGCAGGAAGTTGA+AGG | - | chr6.2:16473166-16473185 | MS.gene55470:CDS | 40.0% | |
TTGGCTTATAGAGATGCTGA+TGG | - | chr6.2:16471338-16471357 | MS.gene55470:CDS | 40.0% | |
! | GTTTTCGGTGAAGGAGAATA+CGG | - | chr6.2:16471074-16471093 | MS.gene55470:CDS | 40.0% |
! | TGATGATGAGACACCGAAAT+TGG | - | chr6.2:16473133-16473152 | MS.gene55470:CDS | 40.0% |
! | TTTCTCCACAAAGCTGTTTC+TGG | - | chr6.2:16472129-16472148 | MS.gene55470:intron | 40.0% |
!! | AGTCGTTGATTCAAGCAAGA+TGG | + | chr6.2:16473104-16473123 | None:intergenic | 40.0% |
!! | CAAAGTATTGGAAGTAGTCC+CGG | - | chr6.2:16472513-16472532 | MS.gene55470:intron | 40.0% |
!! | CCGAGATTTGTTACAAGTAG+AGG | - | chr6.2:16471176-16471195 | MS.gene55470:CDS | 40.0% |
!! | CGAAGAGGAAAATTTGTTGG+AGG | + | chr6.2:16470696-16470715 | None:intergenic | 40.0% |
!! | GGTTGGTTTGATATGAAGCA+CGG | - | chr6.2:16471716-16471735 | MS.gene55470:CDS | 40.0% |
!!! | GGTGGAATGTTTGGTTTTAG+AGG | - | chr6.2:16472450-16472469 | MS.gene55470:intron | 40.0% |
AGCTAACGGTCACTATGACT+TGG | - | chr6.2:16470770-16470789 | MS.gene55470:CDS | 45.0% | |
ATCTCAGCTGGTGGAATGTT+TGG | - | chr6.2:16472441-16472460 | MS.gene55470:intron | 45.0% | |
CCTTCACCGAAAACCAACAA+AGG | + | chr6.2:16471068-16471087 | None:intergenic | 45.0% | |
GCTGCATAGTTAACCGAACT+TGG | + | chr6.2:16472714-16472733 | None:intergenic | 45.0% | |
GTATGCATCACCGATAGACT+GGG | - | chr6.2:16470743-16470762 | MS.gene55470:CDS | 45.0% | |
TTACATGTAGCTGCTTCGAG+AGG | - | chr6.2:16472030-16472049 | MS.gene55470:intron | 45.0% | |
TTCGAGAGGCCAATTATCAG+CGG | - | chr6.2:16472044-16472063 | MS.gene55470:intron | 45.0% | |
TTGATCAAGTCAGGCTATGG+TGG | - | chr6.2:16470975-16470994 | MS.gene55470:CDS | 45.0% | |
! | TATTTCTGTTTCGGTGCACC+TGG | - | chr6.2:16473194-16473213 | MS.gene55470:CDS | 45.0% |
! | TGGTGGATGGCTAATGTACA+CGG | - | chr6.2:16470992-16471011 | MS.gene55470:CDS | 45.0% |
!! | ATTATGTGTCGGTGTCGTGT+CGG | - | chr6.2:16471816-16471835 | MS.gene55470:CDS | 45.0% |
!!! | CCTTTGTTGGTTTTCGGTGA+AGG | - | chr6.2:16471065-16471084 | MS.gene55470:CDS | 45.0% |
AAACCAACCGACAAACAGGC+CGG | + | chr6.2:16471705-16471724 | None:intergenic | 50.0% | |
AGACCGGTTGAACCAGAAAC+CGG | - | chr6.2:16471683-16471702 | MS.gene55470:CDS | 50.0% | |
ATACGGACACAGACACGACA+CGG | - | chr6.2:16471739-16471758 | MS.gene55470:CDS | 50.0% | |
CGACTTGTCGGTCAAGTCTT+CGG | + | chr6.2:16472173-16472192 | None:intergenic | 50.0% | |
GGTATGCATCACCGATAGAC+TGG | - | chr6.2:16470742-16470761 | MS.gene55470:CDS | 50.0% | |
GTCATAGTGACCGTTAGCTG+CGG | + | chr6.2:16470769-16470788 | None:intergenic | 50.0% | |
TCGGTGATGCATACCACCAT+TGG | + | chr6.2:16470737-16470756 | None:intergenic | 50.0% | |
TGCATACCACCATTGGTCAC+CGG | + | chr6.2:16470730-16470749 | None:intergenic | 50.0% | |
TGCTGCAAGAGGGAAAGTTG+AGG | - | chr6.2:16471382-16471401 | MS.gene55470:CDS | 50.0% | |
! | TCAAGTCAGGCTATGGTGGA+TGG | - | chr6.2:16470979-16470998 | MS.gene55470:CDS | 50.0% |
AAACCGGCCTGTTTGTCGGT+TGG | - | chr6.2:16471699-16471718 | MS.gene55470:CDS | 55.0% | |
AGTGAAGCACGGACACTCCA+CGG | + | chr6.2:16471871-16471890 | None:intergenic | 55.0% | |
ATAGACTGGGCCGCAGCTAA+CGG | - | chr6.2:16470756-16470775 | MS.gene55470:CDS | 55.0% | |
ATGTACACGGCTGCATCAGC+CGG | - | chr6.2:16471005-16471024 | MS.gene55470:CDS | 55.0% | |
CCACTTCCAGACGCCTGATT+CGG | + | chr6.2:16470851-16470870 | None:intergenic | 55.0% | |
CCAGAAACCGGCCTGTTTGT+CGG | - | chr6.2:16471695-16471714 | MS.gene55470:CDS | 55.0% | |
GATTAGGCATGTCCCCGTGT+CGG | + | chr6.2:16471849-16471868 | None:intergenic | 55.0% | |
GCTGTTCATGCTGCTGCTAG+AGG | - | chr6.2:16471263-16471282 | MS.gene55470:CDS | 55.0% | |
GTTCATGCTGCTGCTAGAGG+TGG | - | chr6.2:16471266-16471285 | MS.gene55470:CDS | 55.0% | |
TCACTTCCCTACGCCGAATC+AGG | - | chr6.2:16470835-16470854 | MS.gene55470:CDS | 55.0% | |
TGCATGCAGCTGCTGCAAGA+GGG | - | chr6.2:16471372-16471391 | MS.gene55470:CDS | 55.0% | |
TTAGCTGCGGCCCAGTCTAT+CGG | + | chr6.2:16470756-16470775 | None:intergenic | 55.0% | |
TTGCATGCAGCTGCTGCAAG+AGG | - | chr6.2:16471371-16471390 | MS.gene55470:CDS | 55.0% | |
! | CATCATCGTGGTGGAATCGC+TGG | - | chr6.2:16472603-16472622 | MS.gene55470:CDS | 55.0% |
! | CCTCTTCGTTGGGAGAGTAC+CGG | - | chr6.2:16470708-16470727 | MS.gene55470:CDS | 55.0% |
!! | AGAGTACCGGTGACCAATGG+TGG | - | chr6.2:16470721-16470740 | MS.gene55470:CDS | 55.0% |
!! | AGGCCGGTTTCTGGTTCAAC+CGG | + | chr6.2:16471689-16471708 | None:intergenic | 55.0% |
ACGGGGACATGCCTAATCCG+TGG | - | chr6.2:16471851-16471870 | MS.gene55470:CDS | 60.0% | |
CAGGCGTCTGGAAGTGGTGT+GGG | - | chr6.2:16470854-16470873 | MS.gene55470:CDS | 60.0% | |
CCGAATCAGGCGTCTGGAAG+TGG | - | chr6.2:16470848-16470867 | MS.gene55470:CDS | 60.0% | |
CCGGTACTCTCCCAACGAAG+AGG | + | chr6.2:16470711-16470730 | None:intergenic | 60.0% | |
GCACGGACACTCCACGGATT+AGG | + | chr6.2:16471865-16471884 | None:intergenic | 60.0% | |
TCAGGCGTCTGGAAGTGGTG+TGG | - | chr6.2:16470853-16470872 | MS.gene55470:CDS | 60.0% | |
TGTCGGTACGTGTCCGACAC+GGG | - | chr6.2:16471833-16471852 | MS.gene55470:CDS | 60.0% | |
! | CCGACAAACAGGCCGGTTTC+TGG | + | chr6.2:16471698-16471717 | None:intergenic | 60.0% |
! | GTGTCGGTACGTGTCCGACA+CGG | - | chr6.2:16471832-16471851 | MS.gene55470:CDS | 60.0% |
!! | CAGACGCCTGATTCGGCGTA+GGG | + | chr6.2:16470844-16470863 | None:intergenic | 60.0% |
!! | GGGAGAGTACCGGTGACCAA+TGG | - | chr6.2:16470718-16470737 | MS.gene55470:CDS | 60.0% |
CCTACGCCGAATCAGGCGTC+TGG | - | chr6.2:16470842-16470861 | MS.gene55470:CDS | 65.0% | |
GTCGGTACGTGTCCGACACG+GGG | - | chr6.2:16471834-16471853 | MS.gene55470:CDS | 65.0% | |
!! | CCAGACGCCTGATTCGGCGT+AGG | + | chr6.2:16470845-16470864 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 16470690 | 16473268 | 16470690 | ID=MS.gene55470 |
chr6.2 | mRNA | 16470690 | 16473268 | 16470690 | ID=MS.gene55470.t1;Parent=MS.gene55470 |
chr6.2 | exon | 16472555 | 16473268 | 16472555 | ID=MS.gene55470.t1.exon1;Parent=MS.gene55470.t1 |
chr6.2 | CDS | 16472555 | 16473268 | 16472555 | ID=cds.MS.gene55470.t1;Parent=MS.gene55470.t1 |
chr6.2 | exon | 16470690 | 16471994 | 16470690 | ID=MS.gene55470.t1.exon2;Parent=MS.gene55470.t1 |
chr6.2 | CDS | 16470690 | 16471994 | 16470690 | ID=cds.MS.gene55470.t1;Parent=MS.gene55470.t1 |
Gene Sequence |
Protein sequence |