AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55470.t1 MTR_6g022830 97.917 672 14 0 1 672 1 672 0.0 1360
MS.gene55470.t1 MTR_6g023070 95.545 606 16 1 67 672 15 609 0.0 1176
MS.gene55470.t1 MTR_8g080080 49.399 666 297 17 1 656 1 636 0.0 553
MS.gene55470.t1 MTR_3g085830 46.522 690 300 18 1 662 1 649 0.0 535
MS.gene55470.t1 MTR_7g117620 29.904 311 176 10 75 379 17 291 9.49e-17 84.3
MS.gene55470.t1 MTR_4g062100 31.220 205 120 6 192 393 108 294 3.93e-16 82.4
MS.gene55470.t1 MTR_7g100390 31.746 189 111 6 192 378 52 224 2.19e-12 70.5
MS.gene55470.t1 MTR_2g096190 26.071 280 175 9 21 298 29 278 2.69e-12 70.1
MS.gene55470.t1 MTR_2g096190 29.302 215 132 5 102 315 66 261 1.32e-11 68.2
MS.gene55470.t1 MTR_2g096190 28.708 209 128 6 193 395 31 224 3.92e-11 66.6
MS.gene55470.t1 MTR_1g032100 27.985 268 138 8 174 402 37 288 2.27e-11 67.4
MS.gene55470.t1 MTR_2g101310 27.143 210 138 5 194 402 143 338 4.91e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55470.t1 AT3G01750 53.698 676 278 16 1 660 1 657 0.0 631
MS.gene55470.t1 AT3G01750 53.698 676 278 16 1 660 1 657 0.0 631
MS.gene55470.t1 AT3G04140 42.940 687 311 19 1 662 1 631 1.06e-157 470
MS.gene55470.t1 AT5G60070 31.140 228 122 8 194 415 113 311 1.59e-14 77.4
MS.gene55470.t1 AT1G07710 34.211 190 105 7 192 378 69 241 1.84e-14 77.0
MS.gene55470.t1 AT1G07710 29.870 231 134 7 175 395 80 292 9.83e-14 74.7
MS.gene55470.t1 AT1G07710 34.211 190 105 7 192 378 69 241 1.84e-14 77.0
MS.gene55470.t1 AT1G07710 29.870 231 134 7 175 395 80 292 9.83e-14 74.7
MS.gene55470.t1 AT2G31820 30.846 201 122 5 194 393 229 413 3.16e-14 76.6
MS.gene55470.t1 AT4G10720 30.279 251 153 11 161 396 1 244 3.51e-13 72.4
MS.gene55470.t1 AT4G10720 30.279 251 153 11 161 396 1 244 6.35e-13 72.0
MS.gene55470.t1 AT2G01680 26.736 288 184 8 192 473 97 363 2.16e-12 70.5
MS.gene55470.t1 AT1G05640 30.000 230 132 8 162 378 115 328 3.13e-12 70.1
MS.gene55470.t1 AT5G51160 29.231 195 121 6 221 410 44 226 2.56e-11 66.6

Find 102 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAATTCTTCGATTTCT+TGG 0.161238 6.2:+16472981 None:intergenic
TTTCTCCACAAAGCTGTTTC+TGG 0.173886 6.2:-16471807 MS.gene55470:CDS
AAATTGTTCTGATGATATTT+TGG 0.217140 6.2:-16472617 MS.gene55470:CDS
GAGCATTAACCGCTGATAAT+TGG 0.259457 6.2:+16471883 None:intergenic
TACAAGTAGAGGTGGGATTA+TGG 0.277088 6.2:-16472749 MS.gene55470:CDS
GAATTTCTCTTAACCAATTT+CGG 0.284326 6.2:+16470790 None:intergenic
GCAAATCTCTTCTTAGCATT+AGG 0.284435 6.2:+16470970 None:intergenic
CAAATCTCTTCTTAGCATTA+GGG 0.301052 6.2:+16470971 None:intergenic
ATCTCAGCTGGTGGAATGTT+TGG 0.325494 6.2:-16471495 MS.gene55470:CDS
AAGGGTCATTATTTCTGTTT+CGG 0.353990 6.2:-16470751 MS.gene55470:CDS
ATCCAATGATGAAGTTTCAT+TGG 0.354015 6.2:-16471130 MS.gene55470:CDS
ACAAAAGAACACTTTCTGTT+AGG 0.359130 6.2:-16471008 MS.gene55470:CDS
ATATCTGAATTCGATGAATT+CGG 0.363865 6.2:+16471534 None:intergenic
TCTTGAGAGGAATCCTTTGT+TGG 0.364285 6.2:-16472884 MS.gene55470:CDS
TGCTTATTATCAATTGATCT+AGG 0.375333 6.2:+16470898 None:intergenic
AATTCCTTCTGCTTATAGAT+TGG 0.379511 6.2:-16472710 MS.gene55470:CDS
TTTCTATGAGAGATTAATGT+TGG 0.395639 6.2:+16471846 None:intergenic
CGACTTGTCGGTCAAGTCTT+CGG 0.396104 6.2:+16471766 None:intergenic
GGTATGCATCACCGATAGAC+TGG 0.404408 6.2:-16473194 MS.gene55470:CDS
TCACTTCCCTACGCCGAATC+AGG 0.406153 6.2:-16473101 MS.gene55470:CDS
ATCAATTGATAATAAGCAAA+AGG 0.410363 6.2:-16470893 MS.gene55470:CDS
GGGATTATGGAAGAAAATAT+TGG 0.420058 6.2:-16472736 MS.gene55470:CDS
TGATGATGAGACACCGAAAT+TGG 0.423038 6.2:-16470803 MS.gene55470:CDS
TATTTCTGTTTCGGTGCACC+TGG 0.423063 6.2:-16470742 MS.gene55470:CDS
ATCCAATGAAACTTCATCAT+TGG 0.426190 6.2:+16471128 None:intergenic
GATAATGACGATATTGTTGC+TGG 0.426326 6.2:-16470859 MS.gene55470:CDS
AAGAATTCTTTGATCAAGTC+AGG 0.426379 6.2:-16472970 MS.gene55470:CDS
CTCAACATATGTGATGTTCA+TGG 0.426668 6.2:-16471588 MS.gene55470:CDS
CAACGAAGAGGAAAATTTGT+TGG 0.433564 6.2:+16473240 None:intergenic
GCACTTCATATGGCAATCAT+AGG 0.435629 6.2:-16471663 MS.gene55470:CDS
GCTGCATAGTTAACCGAACT+TGG 0.447070 6.2:+16471225 None:intergenic
CATTTGAGAATGCAAAGTAT+TGG 0.456293 6.2:-16471435 MS.gene55470:CDS
ATCAAGAAATTAATCTCAGC+TGG 0.458322 6.2:-16471507 MS.gene55470:CDS
GAAAACCAGAAACAGCTTTG+TGG 0.460960 6.2:+16471802 None:intergenic
TGGAAGAACAGCACTTCATA+TGG 0.470812 6.2:-16471673 MS.gene55470:CDS
ATCAACATCAAGAACAATGA+TGG 0.471584 6.2:-16471693 MS.gene55470:CDS
TTCTGTTAGCAGGAAGTTGA+AGG 0.474185 6.2:-16470770 MS.gene55470:CDS
TACTAGCAAAAGGCCAAGTT+CGG 0.475921 6.2:-16471238 MS.gene55470:CDS
TAAGCCACAGCAACAAAACT+AGG 0.476632 6.2:+16470691 None:intergenic
CATCATCGTGGTGGAATCGC+TGG 0.478284 6.2:-16471333 MS.gene55470:CDS
CCACTTCCAGACGCCTGATT+CGG 0.478800 6.2:+16473088 None:intergenic
TTAAGAGAAATTCTGTTAGC+AGG 0.479529 6.2:-16470780 MS.gene55470:CDS
CCGAATCAGGCGTCTGGAAG+TGG 0.484422 6.2:-16473088 MS.gene55470:CDS
TCAATTGATAATAAGCAAAA+GGG 0.495816 6.2:-16470892 MS.gene55470:CDS
CCGAGATTTGTTACAAGTAG+AGG 0.499878 6.2:-16472760 MS.gene55470:CDS
TTGAACAAAGTTGAAGTCTC+CGG 0.501107 6.2:+16472912 None:intergenic
CCTACGCCGAATCAGGCGTC+TGG 0.501158 6.2:-16473094 MS.gene55470:CDS
ATGTACACGGCTGCATCAGC+CGG 0.503217 6.2:-16472931 MS.gene55470:CDS
TTGCATGCAGCTGCTGCAAG+AGG 0.513263 6.2:-16472565 MS.gene55470:CDS
AAGATTTGAAATTTCGTGCC+GGG 0.519401 6.2:+16471405 None:intergenic
TTAGCTGCGGCCCAGTCTAT+CGG 0.522230 6.2:+16473183 None:intergenic
CCTCTTCGTTGGGAGAGTAC+CGG 0.524023 6.2:-16473228 MS.gene55470:CDS
CCTCTACTTGTAACAAATCT+CGG 0.526442 6.2:+16472760 None:intergenic
GGTGTCTCATCATCATCATA+AGG 0.528953 6.2:+16470811 None:intergenic
TCTTTGATCAAGTCAGGCTA+TGG 0.530610 6.2:-16472964 MS.gene55470:CDS
TTTGTGGAGAAAAGTTTCTC+CGG 0.530803 6.2:+16471818 None:intergenic
CGAAGAGGAAAATTTGTTGG+AGG 0.532078 6.2:+16473243 None:intergenic
CAGACGCCTGATTCGGCGTA+GGG 0.533144 6.2:+16473095 None:intergenic
TTGTTCAAATTCTTCTTGAG+AGG 0.533631 6.2:-16472897 MS.gene55470:CDS
CAAAGTATTGGAAGTAGTCC+CGG 0.542869 6.2:-16471423 MS.gene55470:CDS
TTGATCAAGTCAGGCTATGG+TGG 0.545204 6.2:-16472961 MS.gene55470:CDS
TTGGCTTATAGAGATGCTGA+TGG 0.546563 6.2:-16472598 MS.gene55470:CDS
TCGGTGATGCATACCACCAT+TGG 0.546778 6.2:+16473202 None:intergenic
CAGTTTCAACTACTAGCAAA+AGG 0.547071 6.2:-16471248 MS.gene55470:CDS
CAGGCGTCTGGAAGTGGTGT+GGG 0.553479 6.2:-16473082 MS.gene55470:CDS
GCTGTTCATGCTGCTGCTAG+AGG 0.556808 6.2:-16472673 MS.gene55470:CDS
AACAAGTAATTCATCGTCAT+CGG 0.559773 6.2:-16471310 MS.gene55470:CDS
ATCAACTCAACAGATGATCA+AGG 0.560248 6.2:-16471939 MS.gene55470:CDS
ATAGACTGGGCCGCAGCTAA+CGG 0.569380 6.2:-16473180 MS.gene55470:CDS
TGCATACCACCATTGGTCAC+CGG 0.578751 6.2:+16473209 None:intergenic
ATCTCCAATCTATAAGCAGA+AGG 0.579542 6.2:+16472706 None:intergenic
AGATTTGTTACAAGTAGAGG+TGG 0.579667 6.2:-16472757 MS.gene55470:CDS
TCAAGTCAGGCTATGGTGGA+TGG 0.580199 6.2:-16472957 MS.gene55470:CDS
CCAGACGCCTGATTCGGCGT+AGG 0.584492 6.2:+16473094 None:intergenic
AGCTAACGGTCACTATGACT+TGG 0.589392 6.2:-16473166 MS.gene55470:CDS
TGTTGAGTTGATTATGTCAA+AGG 0.589413 6.2:+16471950 None:intergenic
TAAGATTTGAAATTTCGTGC+CGG 0.591666 6.2:+16471404 None:intergenic
GGGAGAGTACCGGTGACCAA+TGG 0.592124 6.2:-16473218 MS.gene55470:CDS
GATTTGTTACAAGTAGAGGT+GGG 0.601343 6.2:-16472756 MS.gene55470:CDS
GTATGCATCACCGATAGACT+GGG 0.601679 6.2:-16473193 MS.gene55470:CDS
ATATACTTTATGCTGCTGCT+AGG 0.602966 6.2:-16472831 MS.gene55470:CDS
TTCTACATGAAAGTGATCTG+TGG 0.604183 6.2:+16471722 None:intergenic
TCAGGCGTCTGGAAGTGGTG+TGG 0.609880 6.2:-16473083 MS.gene55470:CDS
TCTGTTAGCAGGAAGTTGAA+GGG 0.611806 6.2:-16470769 MS.gene55470:CDS
AAGAAATTAATCTCAGCTGG+TGG 0.612186 6.2:-16471504 MS.gene55470:CDS
AGTCGTTGATTCAAGCAAGA+TGG 0.618755 6.2:+16470835 None:intergenic
CCTTCACCGAAAACCAACAA+AGG 0.619616 6.2:+16472871 None:intergenic
TGGTGGATGGCTAATGTACA+CGG 0.625072 6.2:-16472944 MS.gene55470:CDS
TTATGTCAAAGGATGATGCT+AGG 0.625607 6.2:+16471961 None:intergenic
TGCATGCAGCTGCTGCAAGA+GGG 0.631749 6.2:-16472564 MS.gene55470:CDS
GTCATAGTGACCGTTAGCTG+CGG 0.633314 6.2:+16473170 None:intergenic
ATCTCTCATAGAAACAACGC+CGG 0.637369 6.2:-16471837 MS.gene55470:CDS
AGAGTACCGGTGACCAATGG+TGG 0.638604 6.2:-16473215 MS.gene55470:CDS
TTACATGTAGCTGCTTCGAG+AGG 0.644456 6.2:-16471906 MS.gene55470:CDS
CCGGTACTCTCCCAACGAAG+AGG 0.645560 6.2:+16473228 None:intergenic
GTTCATGCTGCTGCTAGAGG+TGG 0.645816 6.2:-16472670 MS.gene55470:CDS
CATATGTTGAGATTTATGAA+AGG 0.646086 6.2:+16471600 None:intergenic
TTATCAAATCATCATCGTGG+TGG 0.649333 6.2:-16471342 MS.gene55470:CDS
GAATTCTTCACATTAAGACC+AGG 0.663718 6.2:+16470724 None:intergenic
TTCGAGAGGCCAATTATCAG+CGG 0.663788 6.2:-16471892 MS.gene55470:CDS
TGCTGCAAGAGGGAAAGTTG+AGG 0.683935 6.2:-16472554 MS.gene55470:intron
GTATTATCAAATCATCATCG+TGG 0.742954 6.2:-16471345 MS.gene55470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAACCTTAATTTGATT+AGG + chr6.2:16471659-16471678 None:intergenic 15.0%
!! ACTATTATAGTAAAGTTGTA+TGG - chr6.2:16471450-16471469 MS.gene55470:CDS 20.0%
!! ATTCAACATAGATGAATATT+TGG - chr6.2:16471587-16471606 MS.gene55470:CDS 20.0%
!! GTAATATCCTAATCAAATTA+AGG - chr6.2:16471649-16471668 MS.gene55470:CDS 20.0%
!!! AAATTGTTCTGATGATATTT+TGG - chr6.2:16471319-16471338 MS.gene55470:CDS 20.0%
!!! ATCAATTGATAATAAGCAAA+AGG - chr6.2:16473043-16473062 MS.gene55470:CDS 20.0%
!!! TCAACTTATAAAGTTTTGTT+TGG - chr6.2:16471494-16471513 MS.gene55470:CDS 20.0%
!!! TCAATTGATAATAAGCAAAA+GGG - chr6.2:16473044-16473063 MS.gene55470:CDS 20.0%
!!! TGATAATACATTTTCAATTC+CGG + chr6.2:16472580-16472599 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG + chr6.2:16471782-16471801 None:intergenic 20.0%
! AATTCAGTGTAATTATGTGT+CGG - chr6.2:16471805-16471824 MS.gene55470:CDS 25.0%
! ATATCTGAATTCGATGAATT+CGG + chr6.2:16472405-16472424 None:intergenic 25.0%
! CATATGTTGAGATTTATGAA+AGG + chr6.2:16472339-16472358 None:intergenic 25.0%
! GAATTTCTCTTAACCAATTT+CGG + chr6.2:16473149-16473168 None:intergenic 25.0%
! TGCTTATTATCAATTGATCT+AGG + chr6.2:16473041-16473060 None:intergenic 25.0%
! TTTCTATGAGAGATTAATGT+TGG + chr6.2:16472093-16472112 None:intergenic 25.0%
!! CATATTTTTCTCTTTCACTT+TGG - chr6.2:16471420-16471439 MS.gene55470:CDS 25.0%
!! CTTTCAATTTTCTTCTCTTT+TGG + chr6.2:16472774-16472793 None:intergenic 25.0%
!! TGGTAATTTGAAGATTTTAG+AGG - chr6.2:16471286-16471305 MS.gene55470:CDS 25.0%
!!! AGTGAAATATTTTTGTACAC+CGG - chr6.2:16472558-16472577 MS.gene55470:CDS 25.0%
!!! ATGAATTCGGATTTTGTTTA+AGG + chr6.2:16472392-16472411 None:intergenic 25.0%
!!! TAAGGTTTTAAAGAATAGAC+CGG - chr6.2:16471667-16471686 MS.gene55470:CDS 25.0%
!!! TTTTCATTGGTTGATTCATA+TGG + chr6.2:16472660-16472679 None:intergenic 25.0%
!!! TTTTGTTTAAGGTAATCAAG+TGG + chr6.2:16472381-16472400 None:intergenic 25.0%
AACAAGTAATTCATCGTCAT+CGG - chr6.2:16472626-16472645 MS.gene55470:CDS 30.0%
AAGAATTCTTTGATCAAGTC+AGG - chr6.2:16470966-16470985 MS.gene55470:CDS 30.0%
AATTCCTTCTGCTTATAGAT+TGG - chr6.2:16471226-16471245 MS.gene55470:CDS 30.0%
ACAAAAGAACACTTTCTGTT+AGG - chr6.2:16472928-16472947 MS.gene55470:CDS 30.0%
ATCAACATCAAGAACAATGA+TGG - chr6.2:16472243-16472262 MS.gene55470:intron 30.0%
ATCAAGAAATTAATCTCAGC+TGG - chr6.2:16472429-16472448 MS.gene55470:intron 30.0%
ATCCAATGAAACTTCATCAT+TGG + chr6.2:16472811-16472830 None:intergenic 30.0%
ATCCAATGATGAAGTTTCAT+TGG - chr6.2:16472806-16472825 MS.gene55470:CDS 30.0%
CAAAGAATTCTTCGATTTCT+TGG + chr6.2:16470958-16470977 None:intergenic 30.0%
CAAATCTCTTCTTAGCATTA+GGG + chr6.2:16472968-16472987 None:intergenic 30.0%
CATTTGAGAATGCAAAGTAT+TGG - chr6.2:16472501-16472520 MS.gene55470:intron 30.0%
GGGATTATGGAAGAAAATAT+TGG - chr6.2:16471200-16471219 MS.gene55470:CDS 30.0%
GTATTATCAAATCATCATCG+TGG - chr6.2:16472591-16472610 MS.gene55470:CDS 30.0%
TTAAGAGAAATTCTGTTAGC+AGG - chr6.2:16473156-16473175 MS.gene55470:CDS 30.0%
TTGTTCAAATTCTTCTTGAG+AGG - chr6.2:16471039-16471058 MS.gene55470:CDS 30.0%
! AACAAATTTTCCTCTTCGTT+GGG - chr6.2:16470698-16470717 MS.gene55470:CDS 30.0%
! AACTGGGATAGTATTTTCAT+TGG + chr6.2:16472673-16472692 None:intergenic 30.0%
! ACATAGATGAATATTTGGTG+TGG - chr6.2:16471592-16471611 MS.gene55470:CDS 30.0%
! GCTTAGACAAAGATTTTCTT+CGG - chr6.2:16472878-16472897 MS.gene55470:CDS 30.0%
! TAAGATTTGAAATTTCGTGC+CGG + chr6.2:16472535-16472554 None:intergenic 30.0%
! TTTTGCTAGTAGTTGAAACT+GGG + chr6.2:16472689-16472708 None:intergenic 30.0%
!! AAGGGTCATTATTTCTGTTT+CGG - chr6.2:16473185-16473204 MS.gene55470:CDS 30.0%
!! AGTTGAAAAAAGCACTTCAT+TGG - chr6.2:16472739-16472758 MS.gene55470:CDS 30.0%
!! TGTTGAGTTGATTATGTCAA+AGG + chr6.2:16471989-16472008 None:intergenic 30.0%
!!! GAAAGTGTTCTTTTGTTGTT+TGG + chr6.2:16472924-16472943 None:intergenic 30.0%
AAGAAATTAATCTCAGCTGG+TGG - chr6.2:16472432-16472451 MS.gene55470:intron 35.0%
ATATACTTTATGCTGCTGCT+AGG - chr6.2:16471105-16471124 MS.gene55470:CDS 35.0%
ATCAACTCAACAGATGATCA+AGG - chr6.2:16471997-16472016 MS.gene55470:intron 35.0%
ATCTCCAATCTATAAGCAGA+AGG + chr6.2:16471233-16471252 None:intergenic 35.0%
CAACGAAGAGGAAAATTTGT+TGG + chr6.2:16470699-16470718 None:intergenic 35.0%
CAGTTTCAACTACTAGCAAA+AGG - chr6.2:16472688-16472707 MS.gene55470:CDS 35.0%
CCTCTACTTGTAACAAATCT+CGG + chr6.2:16471179-16471198 None:intergenic 35.0%
CTCAACATATGTGATGTTCA+TGG - chr6.2:16472348-16472367 MS.gene55470:intron 35.0%
GAATTCTTCACATTAAGACC+AGG + chr6.2:16473215-16473234 None:intergenic 35.0%
GATAATGACGATATTGTTGC+TGG - chr6.2:16473077-16473096 MS.gene55470:CDS 35.0%
GCAAATCTCTTCTTAGCATT+AGG + chr6.2:16472969-16472988 None:intergenic 35.0%
GTTCATGAATCTCAAAATGC+AGG - chr6.2:16471942-16471961 MS.gene55470:CDS 35.0%
TACAGTCTATTTGAGTCTCA+TGG - chr6.2:16471907-16471926 MS.gene55470:CDS 35.0%
TTATCAAATCATCATCGTGG+TGG - chr6.2:16472594-16472613 MS.gene55470:CDS 35.0%
TTATGTCAAAGGATGATGCT+AGG + chr6.2:16471978-16471997 None:intergenic 35.0%
TTCTACATGAAAGTGATCTG+TGG + chr6.2:16472217-16472236 None:intergenic 35.0%
TTGAACAAAGTTGAAGTCTC+CGG + chr6.2:16471027-16471046 None:intergenic 35.0%
TTTGATATGAAGCACGGATA+CGG - chr6.2:16471722-16471741 MS.gene55470:CDS 35.0%
TTTGTGGAGAAAAGTTTCTC+CGG + chr6.2:16472121-16472140 None:intergenic 35.0%
! AAGATTTGAAATTTCGTGCC+GGG + chr6.2:16472534-16472553 None:intergenic 35.0%
! CAACAAATTTTCCTCTTCGT+TGG - chr6.2:16470697-16470716 MS.gene55470:CDS 35.0%
! CTTTTGCTAGTAGTTGAAAC+TGG + chr6.2:16472690-16472709 None:intergenic 35.0%
!! AGATTTGTTACAAGTAGAGG+TGG - chr6.2:16471179-16471198 MS.gene55470:CDS 35.0%
!! GATTTGTTACAAGTAGAGGT+GGG - chr6.2:16471180-16471199 MS.gene55470:CDS 35.0%
!! TTTTCAAAAGCTCGACTTGT+CGG + chr6.2:16472185-16472204 None:intergenic 35.0%
!!! AGGAATCCTTTGTTGGTTTT+CGG - chr6.2:16471059-16471078 MS.gene55470:CDS 35.0%
!!! GTGGAATGTTTGGTTTTAGA+GGG - chr6.2:16472451-16472470 MS.gene55470:intron 35.0%
!!! TAAACCTAGTTTTGTTGCTG+TGG - chr6.2:16473241-16473260 MS.gene55470:CDS 35.0%
ACTGAGATCAAAGTGAAGCA+CGG + chr6.2:16471882-16471901 None:intergenic 40.0%
ATCTCTCATAGAAACAACGC+CGG - chr6.2:16472099-16472118 MS.gene55470:intron 40.0%
CATGAATCTCAAAATGCAGG+TGG - chr6.2:16471945-16471964 MS.gene55470:CDS 40.0%
GAAAACCAGAAACAGCTTTG+TGG + chr6.2:16472137-16472156 None:intergenic 40.0%
GAGCATTAACCGCTGATAAT+TGG + chr6.2:16472056-16472075 None:intergenic 40.0%
GCACTTCATATGGCAATCAT+AGG - chr6.2:16472273-16472292 MS.gene55470:intron 40.0%
GGTGTCTCATCATCATCATA+AGG + chr6.2:16473128-16473147 None:intergenic 40.0%
TAAGCCACAGCAACAAAACT+AGG + chr6.2:16473248-16473267 None:intergenic 40.0%
TACAAGTAGAGGTGGGATTA+TGG - chr6.2:16471187-16471206 MS.gene55470:CDS 40.0%
TACTAGCAAAAGGCCAAGTT+CGG - chr6.2:16472698-16472717 MS.gene55470:CDS 40.0%
TATCAAACCAACCGACAAAC+AGG + chr6.2:16471709-16471728 None:intergenic 40.0%
TCTCAAATTATTAGCGGCGT+CGG + chr6.2:16471776-16471795 None:intergenic 40.0%
TCTGTTAGCAGGAAGTTGAA+GGG - chr6.2:16473167-16473186 MS.gene55470:CDS 40.0%
TCTTGAGAGGAATCCTTTGT+TGG - chr6.2:16471052-16471071 MS.gene55470:CDS 40.0%
TCTTTGATCAAGTCAGGCTA+TGG - chr6.2:16470972-16470991 MS.gene55470:CDS 40.0%
TGGAAGAACAGCACTTCATA+TGG - chr6.2:16472263-16472282 MS.gene55470:intron 40.0%
TTCTGTTAGCAGGAAGTTGA+AGG - chr6.2:16473166-16473185 MS.gene55470:CDS 40.0%
TTGGCTTATAGAGATGCTGA+TGG - chr6.2:16471338-16471357 MS.gene55470:CDS 40.0%
! GTTTTCGGTGAAGGAGAATA+CGG - chr6.2:16471074-16471093 MS.gene55470:CDS 40.0%
! TGATGATGAGACACCGAAAT+TGG - chr6.2:16473133-16473152 MS.gene55470:CDS 40.0%
! TTTCTCCACAAAGCTGTTTC+TGG - chr6.2:16472129-16472148 MS.gene55470:intron 40.0%
!! AGTCGTTGATTCAAGCAAGA+TGG + chr6.2:16473104-16473123 None:intergenic 40.0%
!! CAAAGTATTGGAAGTAGTCC+CGG - chr6.2:16472513-16472532 MS.gene55470:intron 40.0%
!! CCGAGATTTGTTACAAGTAG+AGG - chr6.2:16471176-16471195 MS.gene55470:CDS 40.0%
!! CGAAGAGGAAAATTTGTTGG+AGG + chr6.2:16470696-16470715 None:intergenic 40.0%
!! GGTTGGTTTGATATGAAGCA+CGG - chr6.2:16471716-16471735 MS.gene55470:CDS 40.0%
!!! GGTGGAATGTTTGGTTTTAG+AGG - chr6.2:16472450-16472469 MS.gene55470:intron 40.0%
AGCTAACGGTCACTATGACT+TGG - chr6.2:16470770-16470789 MS.gene55470:CDS 45.0%
ATCTCAGCTGGTGGAATGTT+TGG - chr6.2:16472441-16472460 MS.gene55470:intron 45.0%
CCTTCACCGAAAACCAACAA+AGG + chr6.2:16471068-16471087 None:intergenic 45.0%
GCTGCATAGTTAACCGAACT+TGG + chr6.2:16472714-16472733 None:intergenic 45.0%
GTATGCATCACCGATAGACT+GGG - chr6.2:16470743-16470762 MS.gene55470:CDS 45.0%
TTACATGTAGCTGCTTCGAG+AGG - chr6.2:16472030-16472049 MS.gene55470:intron 45.0%
TTCGAGAGGCCAATTATCAG+CGG - chr6.2:16472044-16472063 MS.gene55470:intron 45.0%
TTGATCAAGTCAGGCTATGG+TGG - chr6.2:16470975-16470994 MS.gene55470:CDS 45.0%
! TATTTCTGTTTCGGTGCACC+TGG - chr6.2:16473194-16473213 MS.gene55470:CDS 45.0%
! TGGTGGATGGCTAATGTACA+CGG - chr6.2:16470992-16471011 MS.gene55470:CDS 45.0%
!! ATTATGTGTCGGTGTCGTGT+CGG - chr6.2:16471816-16471835 MS.gene55470:CDS 45.0%
!!! CCTTTGTTGGTTTTCGGTGA+AGG - chr6.2:16471065-16471084 MS.gene55470:CDS 45.0%
AAACCAACCGACAAACAGGC+CGG + chr6.2:16471705-16471724 None:intergenic 50.0%
AGACCGGTTGAACCAGAAAC+CGG - chr6.2:16471683-16471702 MS.gene55470:CDS 50.0%
ATACGGACACAGACACGACA+CGG - chr6.2:16471739-16471758 MS.gene55470:CDS 50.0%
CGACTTGTCGGTCAAGTCTT+CGG + chr6.2:16472173-16472192 None:intergenic 50.0%
GGTATGCATCACCGATAGAC+TGG - chr6.2:16470742-16470761 MS.gene55470:CDS 50.0%
GTCATAGTGACCGTTAGCTG+CGG + chr6.2:16470769-16470788 None:intergenic 50.0%
TCGGTGATGCATACCACCAT+TGG + chr6.2:16470737-16470756 None:intergenic 50.0%
TGCATACCACCATTGGTCAC+CGG + chr6.2:16470730-16470749 None:intergenic 50.0%
TGCTGCAAGAGGGAAAGTTG+AGG - chr6.2:16471382-16471401 MS.gene55470:CDS 50.0%
! TCAAGTCAGGCTATGGTGGA+TGG - chr6.2:16470979-16470998 MS.gene55470:CDS 50.0%
AAACCGGCCTGTTTGTCGGT+TGG - chr6.2:16471699-16471718 MS.gene55470:CDS 55.0%
AGTGAAGCACGGACACTCCA+CGG + chr6.2:16471871-16471890 None:intergenic 55.0%
ATAGACTGGGCCGCAGCTAA+CGG - chr6.2:16470756-16470775 MS.gene55470:CDS 55.0%
ATGTACACGGCTGCATCAGC+CGG - chr6.2:16471005-16471024 MS.gene55470:CDS 55.0%
CCACTTCCAGACGCCTGATT+CGG + chr6.2:16470851-16470870 None:intergenic 55.0%
CCAGAAACCGGCCTGTTTGT+CGG - chr6.2:16471695-16471714 MS.gene55470:CDS 55.0%
GATTAGGCATGTCCCCGTGT+CGG + chr6.2:16471849-16471868 None:intergenic 55.0%
GCTGTTCATGCTGCTGCTAG+AGG - chr6.2:16471263-16471282 MS.gene55470:CDS 55.0%
GTTCATGCTGCTGCTAGAGG+TGG - chr6.2:16471266-16471285 MS.gene55470:CDS 55.0%
TCACTTCCCTACGCCGAATC+AGG - chr6.2:16470835-16470854 MS.gene55470:CDS 55.0%
TGCATGCAGCTGCTGCAAGA+GGG - chr6.2:16471372-16471391 MS.gene55470:CDS 55.0%
TTAGCTGCGGCCCAGTCTAT+CGG + chr6.2:16470756-16470775 None:intergenic 55.0%
TTGCATGCAGCTGCTGCAAG+AGG - chr6.2:16471371-16471390 MS.gene55470:CDS 55.0%
! CATCATCGTGGTGGAATCGC+TGG - chr6.2:16472603-16472622 MS.gene55470:CDS 55.0%
! CCTCTTCGTTGGGAGAGTAC+CGG - chr6.2:16470708-16470727 MS.gene55470:CDS 55.0%
!! AGAGTACCGGTGACCAATGG+TGG - chr6.2:16470721-16470740 MS.gene55470:CDS 55.0%
!! AGGCCGGTTTCTGGTTCAAC+CGG + chr6.2:16471689-16471708 None:intergenic 55.0%
ACGGGGACATGCCTAATCCG+TGG - chr6.2:16471851-16471870 MS.gene55470:CDS 60.0%
CAGGCGTCTGGAAGTGGTGT+GGG - chr6.2:16470854-16470873 MS.gene55470:CDS 60.0%
CCGAATCAGGCGTCTGGAAG+TGG - chr6.2:16470848-16470867 MS.gene55470:CDS 60.0%
CCGGTACTCTCCCAACGAAG+AGG + chr6.2:16470711-16470730 None:intergenic 60.0%
GCACGGACACTCCACGGATT+AGG + chr6.2:16471865-16471884 None:intergenic 60.0%
TCAGGCGTCTGGAAGTGGTG+TGG - chr6.2:16470853-16470872 MS.gene55470:CDS 60.0%
TGTCGGTACGTGTCCGACAC+GGG - chr6.2:16471833-16471852 MS.gene55470:CDS 60.0%
! CCGACAAACAGGCCGGTTTC+TGG + chr6.2:16471698-16471717 None:intergenic 60.0%
! GTGTCGGTACGTGTCCGACA+CGG - chr6.2:16471832-16471851 MS.gene55470:CDS 60.0%
!! CAGACGCCTGATTCGGCGTA+GGG + chr6.2:16470844-16470863 None:intergenic 60.0%
!! GGGAGAGTACCGGTGACCAA+TGG - chr6.2:16470718-16470737 MS.gene55470:CDS 60.0%
CCTACGCCGAATCAGGCGTC+TGG - chr6.2:16470842-16470861 MS.gene55470:CDS 65.0%
GTCGGTACGTGTCCGACACG+GGG - chr6.2:16471834-16471853 MS.gene55470:CDS 65.0%
!! CCAGACGCCTGATTCGGCGT+AGG + chr6.2:16470845-16470864 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 16470690 16473268 16470690 ID=MS.gene55470
chr6.2 mRNA 16470690 16473268 16470690 ID=MS.gene55470.t1;Parent=MS.gene55470
chr6.2 exon 16472555 16473268 16472555 ID=MS.gene55470.t1.exon1;Parent=MS.gene55470.t1
chr6.2 CDS 16472555 16473268 16472555 ID=cds.MS.gene55470.t1;Parent=MS.gene55470.t1
chr6.2 exon 16470690 16471994 16470690 ID=MS.gene55470.t1.exon2;Parent=MS.gene55470.t1
chr6.2 CDS 16470690 16471994 16470690 ID=cds.MS.gene55470.t1;Parent=MS.gene55470.t1
Gene Sequence

>MS.gene55470

ATGCCTCCAACAAATTTTCCTCTTCGTTGGGAGAGTACCGGTGACCAATGGTGGTATGCATCACCGATAGACTGGGCCGCAGCTAACGGTCACTATGACTTGGTTCGCGAAATGCTTAAAATCGATAGCAATCATCTCTTCAAACTCACTTCCCTACGCCGAATCAGGCGTCTGGAAGTGGTGTGGGATGATGACGAAGAACAATTCAACAACGTCACAAAGTTTCGTTCGCAAGTAGCATATAAACTTTTACTAGAAAGCGAATCCAAGAAATCGAAGAATTCTTTGATCAAGTCAGGCTATGGTGGATGGCTAATGTACACGGCTGCATCAGCCGGAGACTTCAACTTTGTTCAAATTCTTCTTGAGAGGAATCCTTTGTTGGTTTTCGGTGAAGGAGAATACGGTGTTACTGATATACTTTATGCTGCTGCTAGGAGCAAGAATTGTGATGTTTTTAAGCTGCTTTTTGATTTCGCAGTTTCACCGAGATTTGTTACAAGTAGAGGTGGGATTATGGAAGAAAATATTGGTGAAATTCCTTCTGCTTATAGATTGGAGATGATTAATAGAGCTGTTCATGCTGCTGCTAGAGGTGGTAATTTGAAGATTTTAGAGGAACTTCTTGCAAATTGTTCTGATGATATTTTGGCTTATAGAGATGCTGATGGATCAACTGCTTTGCATGCAGCTGCTGCAAGAGGGAAAGTTGAGGTAATTTTCTTGTTCTCATATTTTTCTCTTTCACTTTGGAAAAACTACTATTATAGTAAAGTTGTATGGCATTTTTTTCAAAAATATAAATCAACTTATAAAGTTTTGTTTGGTGTTGAATGTTGATTGAGCATATATCACTTTTTGATTCATAGATGAATATCAAACAGAAATAGAATTAGAATTCAACATAGATGAATATTTGGTGTGGAGTATCAAACTATAATAGAATAAATCTATTCTTAGTAATATCCTAATCAAATTAAGGTTTTAAAGAATAGACCGGTTGAACCAGAAACCGGCCTGTTTGTCGGTTGGTTTGATATGAAGCACGGATACGGACACAGACACGACACGGACACTGACACGCCGACGCCGCTAATAATTTGAGAAAATCATATAATTCAGTGTAATTATGTGTCGGTGTCGTGTCGGTACGTGTCCGACACGGGGACATGCCTAATCCGTGGAGTGTCCGTGCTTCACTTTGATCTCAGTTGAATTACAGTCTATTTGAGTCTCATGGTACTCAGAACTTGTTCATGAATCTCAAAATGCAGGTGGTTAAATACCTAGCATCATCCTTTGACATAATCAACTCAACAGATGATCAAGGAAACACTGCTTTACATGTAGCTGCTTCGAGAGGCCAATTATCAGCGGTTAATGCTCTAATATCGTTGTTTCCAACATTAATCTCTCATAGAAACAACGCCGGAGAAACTTTTCTCCACAAAGCTGTTTCTGGTTTTCAAACTCATGCATTCCGAAGACTTGACCGACAAGTCGAGCTTTTGAAAAAGCTATTAACCACAGATCACTTTCATGTAGAAGAAATCATCAACATCAAGAACAATGATGGAAGAACAGCACTTCATATGGCAATCATAGGAAACATTCACATTGATCTTGTTCAACTTTTGATGACAGCACCTTTCATAAATCTCAACATATGTGATGTTCATGGTATGACACCACTTGATTACCTTAAACAAAATCCGAATTCATCGAATTCAGATATTTTGATCAAGAAATTAATCTCAGCTGGTGGAATGTTTGGTTTTAGAGGGTATGATTCAAGAAAAGCTATAGCTTCACATTTGAGAATGCAAAGTATTGGAAGTAGTCCCGGCACGAAATTTCAAATCTTAGACAGTGAAATATTTTTGTACACCGGAATTGAAAATGTATTATCAAATCATCATCGTGGTGGAATCGCTGGAACAAGTAATTCATCGTCATCGGAACACATTCCATATGAATCAACCAATGAAAATACTATCCCAGTTTCAACTACTAGCAAAAGGCCAAGTTCGGTTAACTATGCAGCGTCGAAGTTGAAAAAAGCACTTCATTGGAGTACTAAACCAAAAGAGAAGAAAATTGAAAGATCAAAGAAATTATCCAATGATGAAGTTTCATTGGATTCATCGTCATGCAAGAAAATGAGTACTAATAGTTTCGATGAAATTTCGCTTAGACAAAGATTTTCTTCGGCTTCTAAGACAAATTTGATTCCAAACAACAAAAGAACACTTTCTGTTAGGAGTTATCAATCAAGCCCTAATGCTAAGAAGAGATTTGCATCAGCAAGAACAAGATCAAGTTCTTTTTCAAAATCATCAATTTCTTCACCTAGATCAATTGATAATAAGCAAAAGGGTGTTTATATCGATAATGACGATATTGTTGCTGGACCATCTTGCTTGAATCAACGACTACCTTATGATGATGATGAGACACCGAAATTGGTTAAGAGAAATTCTGTTAGCAGGAAGTTGAAGGGTCATTATTTCTGTTTCGGTGCACCTGGTCTTAATGTGAAGAATTCAGTTCATAAACCTAGTTTTGTTGCTGTGGCTTAA

Protein sequence

>MS.gene55470.t1

MPPTNFPLRWESTGDQWWYASPIDWAAANGHYDLVREMLKIDSNHLFKLTSLRRIRRLEVVWDDDEEQFNNVTKFRSQVAYKLLLESESKKSKNSLIKSGYGGWLMYTAASAGDFNFVQILLERNPLLVFGEGEYGVTDILYAAARSKNCDVFKLLFDFAVSPRFVTSRGGIMEENIGEIPSAYRLEMINRAVHAAARGGNLKILEELLANCSDDILAYRDADGSTALHAAAARGKVEVVKYLASSFDIINSTDDQGNTALHVAASRGQLSAVNALISLFPTLISHRNNAGETFLHKAVSGFQTHAFRRLDRQVELLKKLLTTDHFHVEEIINIKNNDGRTALHMAIIGNIHIDLVQLLMTAPFINLNICDVHGMTPLDYLKQNPNSSNSDILIKKLISAGGMFGFRGYDSRKAIASHLRMQSIGSSPGTKFQILDSEIFLYTGIENVLSNHHRGGIAGTSNSSSSEHIPYESTNENTIPVSTTSKRPSSVNYAASKLKKALHWSTKPKEKKIERSKKLSNDEVSLDSSSCKKMSTNSFDEISLRQRFSSASKTNLIPNNKRTLSVRSYQSSPNAKKRFASARTRSSSFSKSSISSPRSIDNKQKGVYIDNDDIVAGPSCLNQRLPYDDDETPKLVKRNSVSRKLKGHYFCFGAPGLNVKNSVHKPSFVAVA