Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47111.t1 | XP_013451394.1 | 97.6 | 672 | 16 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1198 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47111.t1 | A0A072U6R4 | 97.6 | 672 | 16 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1198.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049501 | MS.gene47111 | 0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene47111 | 0.811655 | 6.28E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene47111 | 0.842913 | 1.93E-58 | -1.69E-46 |
| MS.gene050844 | MS.gene47111 | 0.820909 | 5.34E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene47111 | 0.824183 | 9.27E-54 | -1.69E-46 |
| MS.gene051265 | MS.gene47111 | 0.842942 | 1.90E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene47111 | 0.815032 | 1.14E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene47111 | 0.832104 | 1.14E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene47111 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene47111 | 0.808879 | 2.49E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene47111 | 0.818719 | 1.69E-52 | -1.69E-46 |
| MS.gene05468 | MS.gene47111 | 0.819574 | 1.08E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene47111 | 0.82803 | 1.13E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene47111 | 0.814326 | 1.63E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene47111 | 0.81513 | 1.08E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene47111 | 0.822139 | 2.78E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene47111 | 0.803356 | 3.62E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene47111 | 0.804129 | 2.50E-49 | -1.69E-46 |
| MS.gene056543 | MS.gene47111 | 0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene47111 | 0.831419 | 1.69E-55 | -1.69E-46 |
| MS.gene058168 | MS.gene47111 | 0.82861 | 8.17E-55 | -1.69E-46 |
| MS.gene060918 | MS.gene47111 | 0.802131 | 6.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072797 | MS.gene47111 | PPI |
| MS.gene91166 | MS.gene47111 | PPI |
| MS.gene015696 | MS.gene47111 | PPI |
| MS.gene030419 | MS.gene47111 | PPI |
| MS.gene056264 | MS.gene47111 | PPI |
| MS.gene88176 | MS.gene47111 | PPI |
| MS.gene47111 | MS.gene050373 | PPI |
| MS.gene015567 | MS.gene47111 | PPI |
| MS.gene044769 | MS.gene47111 | PPI |
| MS.gene044767 | MS.gene47111 | PPI |
| MS.gene020478 | MS.gene47111 | PPI |
| MS.gene070324 | MS.gene47111 | PPI |
| MS.gene47111 | MS.gene88178 | PPI |
| MS.gene063697 | MS.gene47111 | PPI |
| MS.gene47111 | MS.gene98667 | PPI |
| MS.gene98602 | MS.gene47111 | PPI |
| MS.gene72164 | MS.gene47111 | PPI |
| MS.gene048788 | MS.gene47111 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47111.t1 | MTR_6g022830 | 97.470 | 672 | 17 | 0 | 1 | 672 | 1 | 672 | 0.0 | 1355 |
| MS.gene47111.t1 | MTR_6g023070 | 95.050 | 606 | 19 | 1 | 67 | 672 | 15 | 609 | 0.0 | 1169 |
| MS.gene47111.t1 | MTR_8g080080 | 49.249 | 666 | 298 | 17 | 1 | 656 | 1 | 636 | 0.0 | 551 |
| MS.gene47111.t1 | MTR_3g085830 | 46.232 | 690 | 302 | 18 | 1 | 662 | 1 | 649 | 1.24e-180 | 529 |
| MS.gene47111.t1 | MTR_7g117620 | 29.582 | 311 | 177 | 10 | 75 | 379 | 17 | 291 | 3.16e-16 | 82.8 |
| MS.gene47111.t1 | MTR_4g062100 | 31.220 | 205 | 120 | 6 | 192 | 393 | 108 | 294 | 3.96e-16 | 82.4 |
| MS.gene47111.t1 | MTR_2g096190 | 29.126 | 206 | 125 | 6 | 192 | 394 | 104 | 291 | 7.96e-13 | 72.0 |
| MS.gene47111.t1 | MTR_2g096190 | 26.071 | 280 | 175 | 9 | 21 | 298 | 29 | 278 | 2.53e-12 | 70.1 |
| MS.gene47111.t1 | MTR_7g100390 | 30.319 | 188 | 115 | 4 | 192 | 378 | 52 | 224 | 6.98e-12 | 68.9 |
| MS.gene47111.t1 | MTR_1g032100 | 27.985 | 268 | 138 | 8 | 174 | 402 | 37 | 288 | 2.14e-11 | 67.4 |
| MS.gene47111.t1 | MTR_2g101310 | 27.143 | 210 | 138 | 5 | 194 | 402 | 143 | 338 | 4.70e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47111.t1 | AT3G01750 | 53.846 | 676 | 277 | 16 | 1 | 660 | 1 | 657 | 0.0 | 632 |
| MS.gene47111.t1 | AT3G01750 | 53.846 | 676 | 277 | 16 | 1 | 660 | 1 | 657 | 0.0 | 632 |
| MS.gene47111.t1 | AT3G04140 | 42.940 | 687 | 311 | 19 | 1 | 662 | 1 | 631 | 2.07e-157 | 469 |
| MS.gene47111.t1 | AT1G07710 | 34.737 | 190 | 104 | 7 | 192 | 378 | 69 | 241 | 4.82e-15 | 79.0 |
| MS.gene47111.t1 | AT1G07710 | 29.437 | 231 | 135 | 7 | 175 | 395 | 80 | 292 | 2.98e-13 | 73.2 |
| MS.gene47111.t1 | AT1G07710 | 34.737 | 190 | 104 | 7 | 192 | 378 | 69 | 241 | 4.82e-15 | 79.0 |
| MS.gene47111.t1 | AT1G07710 | 29.437 | 231 | 135 | 7 | 175 | 395 | 80 | 292 | 2.98e-13 | 73.2 |
| MS.gene47111.t1 | AT5G60070 | 30.702 | 228 | 123 | 8 | 194 | 415 | 113 | 311 | 6.65e-14 | 75.5 |
| MS.gene47111.t1 | AT2G31820 | 30.348 | 201 | 123 | 5 | 194 | 393 | 229 | 413 | 1.08e-13 | 75.1 |
| MS.gene47111.t1 | AT4G10720 | 30.279 | 251 | 153 | 11 | 161 | 396 | 1 | 244 | 2.29e-13 | 73.2 |
| MS.gene47111.t1 | AT4G10720 | 30.279 | 251 | 153 | 11 | 161 | 396 | 1 | 244 | 5.05e-13 | 72.0 |
| MS.gene47111.t1 | AT1G05640 | 30.435 | 230 | 131 | 8 | 162 | 378 | 115 | 328 | 4.79e-12 | 69.7 |
| MS.gene47111.t1 | AT2G01680 | 26.389 | 288 | 185 | 8 | 192 | 473 | 97 | 363 | 1.04e-11 | 68.2 |
| MS.gene47111.t1 | AT5G02620 | 30.159 | 189 | 115 | 5 | 192 | 379 | 94 | 266 | 1.32e-11 | 68.2 |
| MS.gene47111.t1 | AT5G02620 | 30.159 | 189 | 115 | 5 | 192 | 379 | 94 | 266 | 1.32e-11 | 68.2 |
| MS.gene47111.t1 | AT5G02620 | 30.159 | 189 | 115 | 5 | 192 | 379 | 94 | 266 | 1.32e-11 | 68.2 |
| MS.gene47111.t1 | AT5G51160 | 27.692 | 195 | 124 | 5 | 221 | 410 | 44 | 226 | 2.39e-11 | 67.0 |
Find 106 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAATTCCTTCTGCTTAT+AGG | 0.154210 | 6.3:-16343150 | MS.gene47111:CDS |
| CAAAGAATTCTTCGATTTCT+TGG | 0.161238 | 6.3:+16343417 | None:intergenic |
| AGGTGGTAATTTGAAGATTT+TGG | 0.166915 | 6.3:-16343089 | MS.gene47111:CDS |
| TTTCTCCACAAAGCTGTTTC+TGG | 0.173886 | 6.3:-16342284 | MS.gene47111:CDS |
| AAATTGTTCTGATGATATTT+TGG | 0.217140 | 6.3:-16343053 | MS.gene47111:CDS |
| GAGCATTAACCGCTGATAAT+TGG | 0.259457 | 6.3:+16342360 | None:intergenic |
| TACAAGTAGAGGTGGGATTA+TGG | 0.277088 | 6.3:-16343185 | MS.gene47111:CDS |
| GAATTTCTCTTAACCAATTT+CGG | 0.284326 | 6.3:+16341267 | None:intergenic |
| GCAAATCTCTTCTTAGCATT+AGG | 0.284435 | 6.3:+16341447 | None:intergenic |
| CAAATCTCTTCTTAGCATTA+GGG | 0.301052 | 6.3:+16341448 | None:intergenic |
| ATCCAATGATGAAGTTTCAT+TGG | 0.328910 | 6.3:-16341607 | MS.gene47111:CDS |
| ATCTCAGCTGGTGGAATGTT+TGG | 0.334203 | 6.3:-16341972 | MS.gene47111:CDS |
| TTAAGAGAAATTCTGTTAGA+AGG | 0.339910 | 6.3:-16341257 | MS.gene47111:CDS |
| AAGGGTCATTATTTCTGTTT+CGG | 0.353990 | 6.3:-16341228 | MS.gene47111:CDS |
| ACAAAAGAACACTTTCTGTT+AGG | 0.359130 | 6.3:-16341485 | MS.gene47111:CDS |
| ATATCTGAATTCGATGAATT+CGG | 0.363865 | 6.3:+16342011 | None:intergenic |
| TCTTGAGAGGAATCCTTTGT+TGG | 0.364285 | 6.3:-16343320 | MS.gene47111:CDS |
| TGCTTATTATCAATTGATCT+AGG | 0.375333 | 6.3:+16341375 | None:intergenic |
| TTTCTATGAGAGATTAATGT+TGG | 0.395639 | 6.3:+16342323 | None:intergenic |
| GGTATGCATCACCGATAGAC+TGG | 0.404408 | 6.3:-16343630 | MS.gene47111:CDS |
| TCACTTCCCTACGCCGAATC+AGG | 0.406153 | 6.3:-16343537 | MS.gene47111:CDS |
| ATCAATTGATAATAAGCAAA+AGG | 0.410363 | 6.3:-16341370 | MS.gene47111:CDS |
| AATAATGACGATATTGTTGC+TGG | 0.418310 | 6.3:-16341336 | MS.gene47111:CDS |
| GGGATTATGGAAGAAAATAT+TGG | 0.420058 | 6.3:-16343172 | MS.gene47111:CDS |
| TGACTTGTCGGTCAAGTCTT+CGG | 0.422256 | 6.3:+16342243 | None:intergenic |
| TGATGATGAGACACCGAAAT+TGG | 0.423038 | 6.3:-16341280 | MS.gene47111:CDS |
| TATTTCTGTTTCGGTGCACC+TGG | 0.423063 | 6.3:-16341219 | MS.gene47111:CDS |
| AAGAATTCTTTGATCAAGTC+AGG | 0.426379 | 6.3:-16343406 | MS.gene47111:CDS |
| CTCAACATATGTGATGTTCA+TGG | 0.426668 | 6.3:-16342065 | MS.gene47111:CDS |
| TCCAATGATGAAGTTTCATT+GGG | 0.432501 | 6.3:-16341606 | MS.gene47111:CDS |
| CAACGAAGAGGAAAATTTGT+TGG | 0.433564 | 6.3:+16343676 | None:intergenic |
| GCACTTCATATGGCAATCAT+AGG | 0.435629 | 6.3:-16342140 | MS.gene47111:CDS |
| ACCCAATGAAACTTCATCAT+TGG | 0.446591 | 6.3:+16341605 | None:intergenic |
| TAAGCCACGGCAACAAAACT+AGG | 0.455876 | 6.3:+16341168 | None:intergenic |
| CATTTGAGAATGCAAAGTAT+TGG | 0.456293 | 6.3:-16341912 | MS.gene47111:CDS |
| GAAAACCAGAAACAGCTTTG+TGG | 0.460960 | 6.3:+16342279 | None:intergenic |
| ATCAAGAAATTGATCTCAGC+TGG | 0.465918 | 6.3:-16341984 | MS.gene47111:CDS |
| TGGAAGAACAGCACTTCATA+TGG | 0.470812 | 6.3:-16342150 | MS.gene47111:CDS |
| ATCAACATCAAGAACAATGA+TGG | 0.471584 | 6.3:-16342170 | MS.gene47111:CDS |
| TACTAGCAAAAGGCCAAGTT+CGG | 0.475921 | 6.3:-16341715 | MS.gene47111:CDS |
| CCACTTCCAGACGCCTGATT+CGG | 0.478800 | 6.3:+16343524 | None:intergenic |
| AATTCCTTCTGCTTATAGGT+TGG | 0.479925 | 6.3:-16343146 | MS.gene47111:CDS |
| CCGAATCAGGCGTCTGGAAG+TGG | 0.484422 | 6.3:-16343524 | MS.gene47111:CDS |
| CATCATCGTGGTGGAATCGT+TGG | 0.495201 | 6.3:-16341810 | MS.gene47111:CDS |
| TCAATTGATAATAAGCAAAA+GGG | 0.495816 | 6.3:-16341369 | MS.gene47111:CDS |
| GCTGCATAATTAACCGAACT+TGG | 0.496926 | 6.3:+16341702 | None:intergenic |
| TTGAACAAAGTTGAAGTCTC+CGG | 0.501107 | 6.3:+16343348 | None:intergenic |
| CCTACGCCGAATCAGGCGTC+TGG | 0.501158 | 6.3:-16343530 | MS.gene47111:CDS |
| ATGTACACGGCTGCATCAGC+CGG | 0.503217 | 6.3:-16343367 | MS.gene47111:CDS |
| TTGCATGCAGCTGCAGCAAG+AGG | 0.504480 | 6.3:-16343001 | MS.gene47111:CDS |
| TTCTGTTAGAAGGAAGTTGA+AGG | 0.511843 | 6.3:-16341247 | MS.gene47111:CDS |
| AAGATTTGAAATTTCGTGCC+GGG | 0.519401 | 6.3:+16341882 | None:intergenic |
| TTAGCTGCGGCCCAGTCTAT+CGG | 0.522230 | 6.3:+16343619 | None:intergenic |
| CCTCTTCGTTGGGAGAGTAC+CGG | 0.524023 | 6.3:-16343664 | MS.gene47111:CDS |
| CCTCTACTTGTAACAAATCT+CGG | 0.526442 | 6.3:+16343196 | None:intergenic |
| GGTGTCTCATCATCATCATA+AGG | 0.528953 | 6.3:+16341288 | None:intergenic |
| TCTTTGATCAAGTCAGGCTA+TGG | 0.530610 | 6.3:-16343400 | MS.gene47111:CDS |
| TTTGTGGAGAAAAGTTTCTC+CGG | 0.530803 | 6.3:+16342295 | None:intergenic |
| CGAAGAGGAAAATTTGTTGG+AGG | 0.532078 | 6.3:+16343679 | None:intergenic |
| CAGACGCCTGATTCGGCGTA+GGG | 0.533144 | 6.3:+16343531 | None:intergenic |
| AACGAGTAATTCATCTTCAT+CGG | 0.533622 | 6.3:-16341787 | MS.gene47111:CDS |
| TTGTTCAAATTCTTCTTGAG+AGG | 0.533631 | 6.3:-16343333 | MS.gene47111:CDS |
| CAAAGTATTGGAAGTAGTCC+CGG | 0.542869 | 6.3:-16341900 | MS.gene47111:CDS |
| CCGAGATTTGTTACAAGTAG+AGG | 0.544674 | 6.3:-16343196 | MS.gene47111:CDS |
| TTGATCAAGTCAGGCTATGG+TGG | 0.545204 | 6.3:-16343397 | MS.gene47111:CDS |
| TTGGCTTATAGAGATGCTGA+TGG | 0.546563 | 6.3:-16343034 | MS.gene47111:CDS |
| TCGGTGATGCATACCACCAT+TGG | 0.546778 | 6.3:+16343638 | None:intergenic |
| CAGTTTCAACTACTAGCAAA+AGG | 0.547071 | 6.3:-16341725 | MS.gene47111:CDS |
| CAGGCGTCTGGAAGTGGTGT+GGG | 0.553479 | 6.3:-16343518 | MS.gene47111:CDS |
| GCTGTTCATGCTGCTGCTAG+AGG | 0.556808 | 6.3:-16343109 | MS.gene47111:CDS |
| ATCAACTCAACAGATGATCA+AGG | 0.560248 | 6.3:-16342416 | MS.gene47111:CDS |
| ATAGACTGGGCCGCAGCTAA+CGG | 0.569380 | 6.3:-16343616 | MS.gene47111:CDS |
| AAGAAATTGATCTCAGCTGG+TGG | 0.578703 | 6.3:-16341981 | MS.gene47111:CDS |
| TGCATACCACCATTGGTCAC+CGG | 0.578751 | 6.3:+16343645 | None:intergenic |
| AGATTTGTTACAAGTAGAGG+TGG | 0.579667 | 6.3:-16343193 | MS.gene47111:CDS |
| TCAAGTCAGGCTATGGTGGA+TGG | 0.580199 | 6.3:-16343393 | MS.gene47111:CDS |
| CCAGACGCCTGATTCGGCGT+AGG | 0.584492 | 6.3:+16343530 | None:intergenic |
| AGCTAACGGTCACTATGACT+TGG | 0.589392 | 6.3:-16343602 | MS.gene47111:CDS |
| TGTTGAGTTGATTATGTCAA+AGG | 0.589413 | 6.3:+16342427 | None:intergenic |
| TAAGATTTGAAATTTCGTGC+CGG | 0.591666 | 6.3:+16341881 | None:intergenic |
| GGGAGAGTACCGGTGACCAA+TGG | 0.592124 | 6.3:-16343654 | MS.gene47111:CDS |
| ATTTCCAACCTATAAGCAGA+AGG | 0.601013 | 6.3:+16343142 | None:intergenic |
| GATTTGTTACAAGTAGAGGT+GGG | 0.601343 | 6.3:-16343192 | MS.gene47111:CDS |
| GTATGCATCACCGATAGACT+GGG | 0.601679 | 6.3:-16343629 | MS.gene47111:CDS |
| ATATACTTTATGCTGCTGCT+AGG | 0.602966 | 6.3:-16343267 | MS.gene47111:CDS |
| TTCTACATGAAAGTGATCTG+TGG | 0.604183 | 6.3:+16342199 | None:intergenic |
| TCTGTTAGAAGGAAGTTGAA+GGG | 0.605359 | 6.3:-16341246 | MS.gene47111:CDS |
| TCAGGCGTCTGGAAGTGGTG+TGG | 0.609880 | 6.3:-16343519 | MS.gene47111:CDS |
| AGTCGTTGATTCAAGCAAGA+TGG | 0.618755 | 6.3:+16341312 | None:intergenic |
| CCTTCACCGAAAACCAACAA+AGG | 0.619616 | 6.3:+16343307 | None:intergenic |
| TGGTGGATGGCTAATGTACA+CGG | 0.625072 | 6.3:-16343380 | MS.gene47111:CDS |
| TTATGTCAAAGGATGATGCT+AGG | 0.625607 | 6.3:+16342438 | None:intergenic |
| GTCATAGTGACCGTTAGCTG+CGG | 0.633314 | 6.3:+16343606 | None:intergenic |
| ATCTCTCATAGAAACAACGC+CGG | 0.637369 | 6.3:-16342314 | MS.gene47111:CDS |
| TTGTCAAATCATCATCGTGG+TGG | 0.638549 | 6.3:-16341819 | MS.gene47111:CDS |
| AGAGTACCGGTGACCAATGG+TGG | 0.638604 | 6.3:-16343651 | MS.gene47111:CDS |
| TTACATGTAGCTGCTTCGAG+AGG | 0.644456 | 6.3:-16342383 | MS.gene47111:CDS |
| TGCAGCAAGAGGGAAAGTTG+AGG | 0.645161 | 6.3:-16342990 | MS.gene47111:intron |
| TGCATGCAGCTGCAGCAAGA+GGG | 0.645560 | 6.3:-16343000 | MS.gene47111:CDS |
| CCGGTACTCTCCCAACGAAG+AGG | 0.645560 | 6.3:+16343664 | None:intergenic |
| GTTCATGCTGCTGCTAGAGG+TGG | 0.645816 | 6.3:-16343106 | MS.gene47111:CDS |
| CATATGTTGAGATTTATGAA+AGG | 0.646086 | 6.3:+16342077 | None:intergenic |
| ACCGCATCCCGATTAAGCCA+CGG | 0.654756 | 6.3:+16341155 | None:intergenic |
| GAATTCTTCACATTAAGACC+AGG | 0.663718 | 6.3:+16341201 | None:intergenic |
| TTCGAGAGGCCAATTATCAG+CGG | 0.663788 | 6.3:-16342369 | MS.gene47111:CDS |
| GTATTGTCAAATCATCATCG+TGG | 0.776230 | 6.3:-16341822 | MS.gene47111:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTATAAAGTTTTGTT+TGG | - | chr6.3:16341930-16341949 | MS.gene47111:CDS | 15.0% |
| !! | GTAATATCGTAATCAAATTA+AGG | - | chr6.3:16342084-16342103 | MS.gene47111:CDS | 20.0% |
| !!! | AAATTGTTCTGATGATATTT+TGG | - | chr6.3:16341796-16341815 | MS.gene47111:CDS | 20.0% |
| !!! | AATTCAACATAGATGAATTT+TGG | - | chr6.3:16342022-16342041 | MS.gene47111:CDS | 20.0% |
| !!! | ATCAATTGATAATAAGCAAA+AGG | - | chr6.3:16343479-16343498 | MS.gene47111:CDS | 20.0% |
| !!! | TCAATTGATAATAAGCAAAA+GGG | - | chr6.3:16343480-16343499 | MS.gene47111:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr6.3:16342216-16342235 | None:intergenic | 20.0% |
| ! | ATATCTGAATTCGATGAATT+CGG | + | chr6.3:16342841-16342860 | None:intergenic | 25.0% |
| ! | CATATGTTGAGATTTATGAA+AGG | + | chr6.3:16342775-16342794 | None:intergenic | 25.0% |
| ! | GAATTTCTCTTAACCAATTT+CGG | + | chr6.3:16343585-16343604 | None:intergenic | 25.0% |
| ! | TCTCTTATAGTAAAGTAGTA+TGG | - | chr6.3:16341886-16341905 | MS.gene47111:CDS | 25.0% |
| ! | TGCTTATTATCAATTGATCT+AGG | + | chr6.3:16343477-16343496 | None:intergenic | 25.0% |
| ! | TTAAGAGAAATTCTGTTAGA+AGG | - | chr6.3:16343592-16343611 | MS.gene47111:CDS | 25.0% |
| ! | TTTCTATGAGAGATTAATGT+TGG | + | chr6.3:16342529-16342548 | None:intergenic | 25.0% |
| !! | ACTTAGACAAAGATTTTCTT+CGG | - | chr6.3:16343314-16343333 | MS.gene47111:CDS | 25.0% |
| !! | CTTTCAATTTTCTTCTCTTT+TGG | + | chr6.3:16343210-16343229 | None:intergenic | 25.0% |
| !!! | AGTGAAATATTTTTGTACAC+CGG | - | chr6.3:16342994-16343013 | MS.gene47111:CDS | 25.0% |
| !!! | ATGAATTCGGATTTTGTTTA+AGG | + | chr6.3:16342828-16342847 | None:intergenic | 25.0% |
| !!! | TAAGGTTTTAAAGAATAGAC+CGG | - | chr6.3:16342102-16342121 | MS.gene47111:CDS | 25.0% |
| !!! | TTTTCATTGGTTGATTCATA+TGG | + | chr6.3:16343096-16343115 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAAGGTAATCAAG+TGG | + | chr6.3:16342817-16342836 | None:intergenic | 25.0% |
| AACGAGTAATTCATCTTCAT+CGG | - | chr6.3:16343062-16343081 | MS.gene47111:CDS | 30.0% | |
| AAGAATTCTTTGATCAAGTC+AGG | - | chr6.3:16341443-16341462 | MS.gene47111:CDS | 30.0% | |
| AATAATGACGATATTGTTGC+TGG | - | chr6.3:16343513-16343532 | MS.gene47111:CDS | 30.0% | |
| ACAAAAGAACACTTTCTGTT+AGG | - | chr6.3:16343364-16343383 | MS.gene47111:CDS | 30.0% | |
| ATCAACATCAAGAACAATGA+TGG | - | chr6.3:16342679-16342698 | MS.gene47111:intron | 30.0% | |
| ATCCAATGATGAAGTTTCAT+TGG | - | chr6.3:16343242-16343261 | MS.gene47111:CDS | 30.0% | |
| CAAAGAATTCTTCGATTTCT+TGG | + | chr6.3:16341435-16341454 | None:intergenic | 30.0% | |
| CAAATCTCTTCTTAGCATTA+GGG | + | chr6.3:16343404-16343423 | None:intergenic | 30.0% | |
| CATTTGAGAATGCAAAGTAT+TGG | - | chr6.3:16342937-16342956 | MS.gene47111:intron | 30.0% | |
| GGGATTATGGAAGAAAATAT+TGG | - | chr6.3:16341677-16341696 | MS.gene47111:CDS | 30.0% | |
| TCCAATGATGAAGTTTCATT+GGG | - | chr6.3:16343243-16343262 | MS.gene47111:CDS | 30.0% | |
| TTCAGTGTAATTATGTGTGT+CGG | - | chr6.3:16342241-16342260 | MS.gene47111:CDS | 30.0% | |
| TTGTTCAAATTCTTCTTGAG+AGG | - | chr6.3:16341516-16341535 | MS.gene47111:CDS | 30.0% | |
| ! | AACAAATTTTCCTCTTCGTT+GGG | - | chr6.3:16341175-16341194 | MS.gene47111:CDS | 30.0% |
| ! | AACTGGGATAGAATTTTCAT+TGG | + | chr6.3:16343109-16343128 | None:intergenic | 30.0% |
| ! | AGGTGGTAATTTGAAGATTT+TGG | - | chr6.3:16341760-16341779 | MS.gene47111:CDS | 30.0% |
| ! | TAAGATTTGAAATTTCGTGC+CGG | + | chr6.3:16342971-16342990 | None:intergenic | 30.0% |
| ! | TGACAATACATTTTCGATTC+CGG | + | chr6.3:16343016-16343035 | None:intergenic | 30.0% |
| ! | TGGTAATTTGAAGATTTTGG+AGG | - | chr6.3:16341763-16341782 | MS.gene47111:CDS | 30.0% |
| ! | TTTTGCTAGTAGTTGAAACT+GGG | + | chr6.3:16343125-16343144 | None:intergenic | 30.0% |
| !! | AACATAGATGAATTTTGGTG+TGG | - | chr6.3:16342027-16342046 | MS.gene47111:CDS | 30.0% |
| !! | AAGGGTCATTATTTCTGTTT+CGG | - | chr6.3:16343621-16343640 | MS.gene47111:CDS | 30.0% |
| !! | AGTTGAAAAAAGCACTTCAT+TGG | - | chr6.3:16343175-16343194 | MS.gene47111:CDS | 30.0% |
| !! | TGTTGAGTTGATTATGTCAA+AGG | + | chr6.3:16342425-16342444 | None:intergenic | 30.0% |
| !!! | GAAAGTGTTCTTTTGTTGTT+TGG | + | chr6.3:16343360-16343379 | None:intergenic | 30.0% |
| !!! | TTTTCAAAAGCTTGACTTGT+CGG | + | chr6.3:16342621-16342640 | None:intergenic | 30.0% |
| AATTCCTTCTGCTTATAGGT+TGG | - | chr6.3:16341703-16341722 | MS.gene47111:CDS | 35.0% | |
| ACCCAATGAAACTTCATCAT+TGG | + | chr6.3:16343247-16343266 | None:intergenic | 35.0% | |
| ATATACTTTATGCTGCTGCT+AGG | - | chr6.3:16341582-16341601 | MS.gene47111:CDS | 35.0% | |
| ATCAACTCAACAGATGATCA+AGG | - | chr6.3:16342433-16342452 | MS.gene47111:CDS | 35.0% | |
| ATCAAGAAATTGATCTCAGC+TGG | - | chr6.3:16342865-16342884 | MS.gene47111:intron | 35.0% | |
| ATTTCCAACCTATAAGCAGA+AGG | + | chr6.3:16341710-16341729 | None:intergenic | 35.0% | |
| CAACGAAGAGGAAAATTTGT+TGG | + | chr6.3:16341176-16341195 | None:intergenic | 35.0% | |
| CAGTTTCAACTACTAGCAAA+AGG | - | chr6.3:16343124-16343143 | MS.gene47111:CDS | 35.0% | |
| CCTCTACTTGTAACAAATCT+CGG | + | chr6.3:16341656-16341675 | None:intergenic | 35.0% | |
| CTCAACATATGTGATGTTCA+TGG | - | chr6.3:16342784-16342803 | MS.gene47111:intron | 35.0% | |
| GAATTCTTCACATTAAGACC+AGG | + | chr6.3:16343651-16343670 | None:intergenic | 35.0% | |
| GCAAATCTCTTCTTAGCATT+AGG | + | chr6.3:16343405-16343424 | None:intergenic | 35.0% | |
| GTATTGTCAAATCATCATCG+TGG | - | chr6.3:16343027-16343046 | MS.gene47111:CDS | 35.0% | |
| GTGAAATTCCTTCTGCTTAT+AGG | - | chr6.3:16341699-16341718 | MS.gene47111:CDS | 35.0% | |
| GTTCATGAATCTCAAAATGC+AGG | - | chr6.3:16342378-16342397 | MS.gene47111:CDS | 35.0% | |
| TACAGTCTATTTGAGTCTCA+TGG | - | chr6.3:16342343-16342362 | MS.gene47111:CDS | 35.0% | |
| TCTGTTAGAAGGAAGTTGAA+GGG | - | chr6.3:16343603-16343622 | MS.gene47111:CDS | 35.0% | |
| TTATGTCAAAGGATGATGCT+AGG | + | chr6.3:16342414-16342433 | None:intergenic | 35.0% | |
| TTCTACATGAAAGTGATCTG+TGG | + | chr6.3:16342653-16342672 | None:intergenic | 35.0% | |
| TTCTGTTAGAAGGAAGTTGA+AGG | - | chr6.3:16343602-16343621 | MS.gene47111:CDS | 35.0% | |
| TTGAACAAAGTTGAAGTCTC+CGG | + | chr6.3:16341504-16341523 | None:intergenic | 35.0% | |
| TTTGATATGAAGCACGGATA+CGG | - | chr6.3:16342156-16342175 | MS.gene47111:CDS | 35.0% | |
| TTTGTGGAGAAAAGTTTCTC+CGG | + | chr6.3:16342557-16342576 | None:intergenic | 35.0% | |
| ! | AAGATTTGAAATTTCGTGCC+GGG | + | chr6.3:16342970-16342989 | None:intergenic | 35.0% |
| ! | CAACAAATTTTCCTCTTCGT+TGG | - | chr6.3:16341174-16341193 | MS.gene47111:CDS | 35.0% |
| ! | CTTTTGCTAGTAGTTGAAAC+TGG | + | chr6.3:16343126-16343145 | None:intergenic | 35.0% |
| !! | AGATTTGTTACAAGTAGAGG+TGG | - | chr6.3:16341656-16341675 | MS.gene47111:CDS | 35.0% |
| !! | GATTTGTTACAAGTAGAGGT+GGG | - | chr6.3:16341657-16341676 | MS.gene47111:CDS | 35.0% |
| !!! | AGGAATCCTTTGTTGGTTTT+CGG | - | chr6.3:16341536-16341555 | MS.gene47111:CDS | 35.0% |
| AAGAAATTGATCTCAGCTGG+TGG | - | chr6.3:16342868-16342887 | MS.gene47111:intron | 40.0% | |
| ACTGAGATCAAAGTGAAGCA+TGG | + | chr6.3:16342318-16342337 | None:intergenic | 40.0% | |
| ATCTCTCATAGAAACAACGC+CGG | - | chr6.3:16342535-16342554 | MS.gene47111:intron | 40.0% | |
| CATGAATCTCAAAATGCAGG+TGG | - | chr6.3:16342381-16342400 | MS.gene47111:CDS | 40.0% | |
| GAAAACCAGAAACAGCTTTG+TGG | + | chr6.3:16342573-16342592 | None:intergenic | 40.0% | |
| GAGCATTAACCGCTGATAAT+TGG | + | chr6.3:16342492-16342511 | None:intergenic | 40.0% | |
| GCACTTCATATGGCAATCAT+AGG | - | chr6.3:16342709-16342728 | MS.gene47111:intron | 40.0% | |
| GCTGCATAATTAACCGAACT+TGG | + | chr6.3:16343150-16343169 | None:intergenic | 40.0% | |
| GGTGTCTCATCATCATCATA+AGG | + | chr6.3:16343564-16343583 | None:intergenic | 40.0% | |
| TACAAGTAGAGGTGGGATTA+TGG | - | chr6.3:16341664-16341683 | MS.gene47111:CDS | 40.0% | |
| TACTAGCAAAAGGCCAAGTT+CGG | - | chr6.3:16343134-16343153 | MS.gene47111:CDS | 40.0% | |
| TCTCAAATTATTAGCGGCGT+CGG | + | chr6.3:16342210-16342229 | None:intergenic | 40.0% | |
| TCTTGAGAGGAATCCTTTGT+TGG | - | chr6.3:16341529-16341548 | MS.gene47111:CDS | 40.0% | |
| TCTTTGATCAAGTCAGGCTA+TGG | - | chr6.3:16341449-16341468 | MS.gene47111:CDS | 40.0% | |
| TGGAAGAACAGCACTTCATA+TGG | - | chr6.3:16342699-16342718 | MS.gene47111:intron | 40.0% | |
| TTGGCTTATAGAGATGCTGA+TGG | - | chr6.3:16341815-16341834 | MS.gene47111:CDS | 40.0% | |
| TTGTCAAATCATCATCGTGG+TGG | - | chr6.3:16343030-16343049 | MS.gene47111:CDS | 40.0% | |
| ! | GTTTTCGGTGAAGGAGAATA+TGG | - | chr6.3:16341551-16341570 | MS.gene47111:CDS | 40.0% |
| ! | TGATGATGAGACACCGAAAT+TGG | - | chr6.3:16343569-16343588 | MS.gene47111:CDS | 40.0% |
| ! | TTTCTCCACAAAGCTGTTTC+TGG | - | chr6.3:16342565-16342584 | MS.gene47111:intron | 40.0% |
| !! | AGTCGTTGATTCAAGCAAGA+TGG | + | chr6.3:16343540-16343559 | None:intergenic | 40.0% |
| !! | CAAAGTATTGGAAGTAGTCC+CGG | - | chr6.3:16342949-16342968 | MS.gene47111:intron | 40.0% |
| !! | CCGAGATTTGTTACAAGTAG+AGG | - | chr6.3:16341653-16341672 | MS.gene47111:CDS | 40.0% |
| !! | CGAAGAGGAAAATTTGTTGG+AGG | + | chr6.3:16341173-16341192 | None:intergenic | 40.0% |
| !! | GGTTGGTTTGATATGAAGCA+CGG | - | chr6.3:16342150-16342169 | MS.gene47111:CDS | 40.0% |
| !!! | GGTGGAATGTTTGGTTTTAG+AGG | - | chr6.3:16342886-16342905 | MS.gene47111:intron | 40.0% |
| !!! | TAAACCTAGTTTTGTTGCCG+TGG | - | chr6.3:16343677-16343696 | MS.gene47111:CDS | 40.0% |
| AGCTAACGGTCACTATGACT+TGG | - | chr6.3:16341247-16341266 | MS.gene47111:CDS | 45.0% | |
| ATCTCAGCTGGTGGAATGTT+TGG | - | chr6.3:16342877-16342896 | MS.gene47111:intron | 45.0% | |
| CCTTCACCGAAAACCAACAA+AGG | + | chr6.3:16341545-16341564 | None:intergenic | 45.0% | |
| GTATGCATCACCGATAGACT+GGG | - | chr6.3:16341220-16341239 | MS.gene47111:CDS | 45.0% | |
| TAAGCCACGGCAACAAAACT+AGG | + | chr6.3:16343684-16343703 | None:intergenic | 45.0% | |
| TTACATGTAGCTGCTTCGAG+AGG | - | chr6.3:16342466-16342485 | MS.gene47111:intron | 45.0% | |
| TTCGAGAGGCCAATTATCAG+CGG | - | chr6.3:16342480-16342499 | MS.gene47111:intron | 45.0% | |
| TTGATCAAGTCAGGCTATGG+TGG | - | chr6.3:16341452-16341471 | MS.gene47111:CDS | 45.0% | |
| ! | TATTTCTGTTTCGGTGCACC+TGG | - | chr6.3:16343630-16343649 | MS.gene47111:CDS | 45.0% |
| ! | TGACTTGTCGGTCAAGTCTT+CGG | + | chr6.3:16342609-16342628 | None:intergenic | 45.0% |
| ! | TGGTGGATGGCTAATGTACA+CGG | - | chr6.3:16341469-16341488 | MS.gene47111:CDS | 45.0% |
| !!! | CCTTTGTTGGTTTTCGGTGA+AGG | - | chr6.3:16341542-16341561 | MS.gene47111:CDS | 45.0% |
| ACCAGAAACCGGCTGTTTGT+CGG | - | chr6.3:16342129-16342148 | MS.gene47111:CDS | 50.0% | |
| AGACCGGTTGAACCAGAAAC+CGG | - | chr6.3:16342118-16342137 | MS.gene47111:CDS | 50.0% | |
| AGTGAAGCATGGACACTCCT+CGG | + | chr6.3:16342307-16342326 | None:intergenic | 50.0% | |
| ATACGGACACAGACACGACA+CGG | - | chr6.3:16342173-16342192 | MS.gene47111:CDS | 50.0% | |
| CAAACCAACCGACAAACAGC+CGG | + | chr6.3:16342140-16342159 | None:intergenic | 50.0% | |
| GGTATGCATCACCGATAGAC+TGG | - | chr6.3:16341219-16341238 | MS.gene47111:CDS | 50.0% | |
| GTCATAGTGACCGTTAGCTG+CGG | + | chr6.3:16341246-16341265 | None:intergenic | 50.0% | |
| TCGGTGATGCATACCACCAT+TGG | + | chr6.3:16341214-16341233 | None:intergenic | 50.0% | |
| TGCAGCAAGAGGGAAAGTTG+AGG | - | chr6.3:16341859-16341878 | MS.gene47111:CDS | 50.0% | |
| TGCATACCACCATTGGTCAC+CGG | + | chr6.3:16341207-16341226 | None:intergenic | 50.0% | |
| ! | CATCATCGTGGTGGAATCGT+TGG | - | chr6.3:16343039-16343058 | MS.gene47111:CDS | 50.0% |
| ! | TCAAGTCAGGCTATGGTGGA+TGG | - | chr6.3:16341456-16341475 | MS.gene47111:CDS | 50.0% |
| !! | TATGTGTGTCGGTGTCGTGT+CGG | - | chr6.3:16342252-16342271 | MS.gene47111:CDS | 50.0% |
| ATAGACTGGGCCGCAGCTAA+CGG | - | chr6.3:16341233-16341252 | MS.gene47111:CDS | 55.0% | |
| ATGTACACGGCTGCATCAGC+CGG | - | chr6.3:16341482-16341501 | MS.gene47111:CDS | 55.0% | |
| CCACTTCCAGACGCCTGATT+CGG | + | chr6.3:16341328-16341347 | None:intergenic | 55.0% | |
| GAAACCGGCTGTTTGTCGGT+TGG | - | chr6.3:16342133-16342152 | MS.gene47111:CDS | 55.0% | |
| GCATGGACACTCCTCGGATT+AGG | + | chr6.3:16342301-16342320 | None:intergenic | 55.0% | |
| GCTGTTCATGCTGCTGCTAG+AGG | - | chr6.3:16341740-16341759 | MS.gene47111:CDS | 55.0% | |
| GTTCATGCTGCTGCTAGAGG+TGG | - | chr6.3:16341743-16341762 | MS.gene47111:CDS | 55.0% | |
| TCACTTCCCTACGCCGAATC+AGG | - | chr6.3:16341312-16341331 | MS.gene47111:CDS | 55.0% | |
| TGCATGCAGCTGCAGCAAGA+GGG | - | chr6.3:16341849-16341868 | MS.gene47111:CDS | 55.0% | |
| TTAGCTGCGGCCCAGTCTAT+CGG | + | chr6.3:16341233-16341252 | None:intergenic | 55.0% | |
| TTGCATGCAGCTGCAGCAAG+AGG | - | chr6.3:16341848-16341867 | MS.gene47111:CDS | 55.0% | |
| ! | ACCGACAAACAGCCGGTTTC+TGG | + | chr6.3:16342133-16342152 | None:intergenic | 55.0% |
| ! | CCTCTTCGTTGGGAGAGTAC+CGG | - | chr6.3:16341185-16341204 | MS.gene47111:CDS | 55.0% |
| !! | AGAGTACCGGTGACCAATGG+TGG | - | chr6.3:16341198-16341217 | MS.gene47111:CDS | 55.0% |
| !! | CAGCCGGTTTCTGGTTCAAC+CGG | + | chr6.3:16342124-16342143 | None:intergenic | 55.0% |
| CAGGCGTCTGGAAGTGGTGT+GGG | - | chr6.3:16341331-16341350 | MS.gene47111:CDS | 60.0% | |
| CCGAATCAGGCGTCTGGAAG+TGG | - | chr6.3:16341325-16341344 | MS.gene47111:CDS | 60.0% | |
| CCGGTACTCTCCCAACGAAG+AGG | + | chr6.3:16341188-16341207 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCCGTGT+CGG | + | chr6.3:16342285-16342304 | None:intergenic | 60.0% | |
| TCAGGCGTCTGGAAGTGGTG+TGG | - | chr6.3:16341330-16341349 | MS.gene47111:CDS | 60.0% | |
| TGTCGGTACGTGTCCGACAC+GGG | - | chr6.3:16342269-16342288 | MS.gene47111:CDS | 60.0% | |
| ! | GTGTCGGTACGTGTCCGACA+CGG | - | chr6.3:16342268-16342287 | MS.gene47111:CDS | 60.0% |
| !! | CAGACGCCTGATTCGGCGTA+GGG | + | chr6.3:16341321-16341340 | None:intergenic | 60.0% |
| !! | GGGAGAGTACCGGTGACCAA+TGG | - | chr6.3:16341195-16341214 | MS.gene47111:CDS | 60.0% |
| ACGGGGACACGCCTAATCCG+AGG | - | chr6.3:16342287-16342306 | MS.gene47111:CDS | 65.0% | |
| CCTACGCCGAATCAGGCGTC+TGG | - | chr6.3:16341319-16341338 | MS.gene47111:CDS | 65.0% | |
| GTCGGTACGTGTCCGACACG+GGG | - | chr6.3:16342270-16342289 | MS.gene47111:CDS | 65.0% | |
| !! | CCAGACGCCTGATTCGGCGT+AGG | + | chr6.3:16341322-16341341 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 16341167 | 16343704 | 16341167 | ID=MS.gene47111 |
| chr6.3 | mRNA | 16341167 | 16343704 | 16341167 | ID=MS.gene47111.t1;Parent=MS.gene47111 |
| chr6.3 | exon | 16342991 | 16343704 | 16342991 | ID=MS.gene47111.t1.exon1;Parent=MS.gene47111.t1 |
| chr6.3 | CDS | 16342991 | 16343704 | 16342991 | ID=cds.MS.gene47111.t1;Parent=MS.gene47111.t1 |
| chr6.3 | exon | 16341167 | 16342471 | 16341167 | ID=MS.gene47111.t1.exon2;Parent=MS.gene47111.t1 |
| chr6.3 | CDS | 16341167 | 16342471 | 16341167 | ID=cds.MS.gene47111.t1;Parent=MS.gene47111.t1 |
| Gene Sequence |
| Protein sequence |
