Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021631.t1 | XP_003588682.1 | 98.8 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 1.50E-279 | 971.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021631.t1 | Q93YV6 | 72.3 | 502 | 125 | 3 | 1 | 494 | 1 | 496 | 6.1e-213 | 741.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021631.t1 | G7I6A8 | 98.8 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 1.1e-279 | 971.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045221 | MS.gene021631 | PPI |
| MS.gene007383 | MS.gene021631 | PPI |
| MS.gene029756 | MS.gene021631 | PPI |
| MS.gene021631 | MS.gene067043 | PPI |
| MS.gene035014 | MS.gene021631 | PPI |
| MS.gene70740 | MS.gene021631 | PPI |
| MS.gene25819 | MS.gene021631 | PPI |
| MS.gene47441 | MS.gene021631 | PPI |
| MS.gene021631 | MS.gene051425 | PPI |
| MS.gene021631 | MS.gene22385 | PPI |
| MS.gene021631 | MS.gene75564 | PPI |
| MS.gene021631 | MS.gene020631 | PPI |
| MS.gene044183 | MS.gene021631 | PPI |
| MS.gene79120 | MS.gene021631 | PPI |
| MS.gene007562 | MS.gene021631 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021631.t1 | MTR_1g011460 | 98.785 | 494 | 6 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1003 |
| MS.gene021631.t1 | MTR_3g107980 | 79.400 | 500 | 94 | 4 | 1 | 492 | 1 | 499 | 0.0 | 818 |
| MS.gene021631.t1 | MTR_4g113020 | 59.281 | 501 | 188 | 4 | 1 | 489 | 1 | 497 | 0.0 | 628 |
| MS.gene021631.t1 | MTR_6g022720 | 53.711 | 512 | 211 | 4 | 1 | 491 | 1 | 507 | 0.0 | 553 |
| MS.gene021631.t1 | MTR_3g086010 | 53.502 | 514 | 213 | 4 | 1 | 490 | 1 | 512 | 0.0 | 546 |
| MS.gene021631.t1 | MTR_3g080070 | 58.079 | 458 | 191 | 1 | 33 | 490 | 67 | 523 | 0.0 | 540 |
| MS.gene021631.t1 | MTR_1g062950 | 57.783 | 469 | 195 | 3 | 14 | 481 | 14 | 480 | 0.0 | 533 |
| MS.gene021631.t1 | MTR_4g113020 | 61.578 | 393 | 136 | 3 | 1 | 382 | 1 | 389 | 1.94e-180 | 511 |
| MS.gene021631.t1 | MTR_1g111570 | 51.313 | 495 | 229 | 6 | 1 | 490 | 1 | 488 | 2.60e-171 | 492 |
| MS.gene021631.t1 | MTR_6g022720 | 54.364 | 401 | 158 | 3 | 1 | 380 | 1 | 397 | 1.39e-152 | 441 |
| MS.gene021631.t1 | MTR_7g102900 | 57.784 | 379 | 148 | 4 | 11 | 388 | 3 | 370 | 4.59e-146 | 423 |
| MS.gene021631.t1 | MTR_1g112940 | 41.500 | 400 | 227 | 3 | 80 | 477 | 40 | 434 | 5.78e-119 | 357 |
| MS.gene021631.t1 | MTR_7g102920 | 61.224 | 98 | 38 | 0 | 380 | 477 | 22 | 119 | 3.19e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021631.t1 | AT5G25510 | 72.655 | 501 | 125 | 3 | 1 | 494 | 1 | 496 | 0.0 | 761 |
| MS.gene021631.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene021631.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene021631.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene021631.t1 | AT4G15415 | 55.992 | 509 | 200 | 5 | 1 | 489 | 1 | 505 | 0.0 | 572 |
| MS.gene021631.t1 | AT1G13460 | 65.550 | 418 | 143 | 1 | 62 | 479 | 71 | 487 | 0.0 | 571 |
| MS.gene021631.t1 | AT1G13460 | 65.550 | 418 | 143 | 1 | 62 | 479 | 71 | 487 | 0.0 | 571 |
| MS.gene021631.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene021631.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene021631.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene021631.t1 | AT3G26020 | 57.540 | 504 | 183 | 5 | 1 | 474 | 1 | 503 | 0.0 | 567 |
| MS.gene021631.t1 | AT3G21650 | 53.458 | 535 | 195 | 6 | 1 | 489 | 1 | 527 | 0.0 | 561 |
| MS.gene021631.t1 | AT3G21650 | 53.458 | 535 | 195 | 6 | 1 | 489 | 1 | 527 | 0.0 | 561 |
| MS.gene021631.t1 | AT3G09880 | 55.960 | 495 | 203 | 3 | 1 | 484 | 1 | 491 | 0.0 | 542 |
| MS.gene021631.t1 | AT5G03470 | 53.388 | 487 | 210 | 5 | 1 | 475 | 1 | 482 | 0.0 | 520 |
| MS.gene021631.t1 | AT3G26030 | 51.681 | 476 | 222 | 4 | 1 | 474 | 1 | 470 | 7.43e-173 | 495 |
| MS.gene021631.t1 | AT3G26020 | 48.551 | 552 | 176 | 7 | 1 | 474 | 1 | 522 | 1.30e-167 | 484 |
| MS.gene021631.t1 | AT3G54930 | 50.641 | 468 | 220 | 3 | 12 | 478 | 37 | 494 | 7.15e-165 | 476 |
| MS.gene021631.t1 | AT3G54930 | 50.641 | 468 | 220 | 3 | 12 | 478 | 37 | 494 | 7.15e-165 | 476 |
| MS.gene021631.t1 | AT3G26020 | 48.972 | 535 | 182 | 9 | 1 | 474 | 1 | 505 | 2.86e-161 | 467 |
| MS.gene021631.t1 | AT3G26020 | 48.972 | 535 | 182 | 9 | 1 | 474 | 1 | 505 | 2.86e-161 | 467 |
| MS.gene021631.t1 | AT3G26020 | 48.972 | 535 | 182 | 9 | 1 | 474 | 1 | 505 | 2.86e-161 | 467 |
| MS.gene021631.t1 | AT4G15415 | 56.608 | 401 | 151 | 4 | 1 | 381 | 1 | 398 | 5.01e-158 | 456 |
| MS.gene021631.t1 | AT3G54930 | 48.787 | 371 | 179 | 3 | 12 | 381 | 37 | 397 | 1.85e-120 | 359 |
Find 91 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCGTTGGTGCCATTTA+AGG | 0.176241 | 1.4:-9172984 | MS.gene021631:CDS |
| TATTAACAGCCTACACTTTC+AGG | 0.179997 | 1.4:-9172048 | MS.gene021631:intron |
| ATCTTGTCATACTAACTTTA+AGG | 0.180792 | 1.4:-9171172 | MS.gene021631:CDS |
| TTTCCTGCCAGCATGGTTTC+TGG | 0.193282 | 1.4:-9173010 | MS.gene021631:CDS |
| CCATGCCTCCTTTCGCTTCT+CGG | 0.228238 | 1.4:+9171122 | None:intergenic |
| GCATTTGGAACATCCTTAAA+TGG | 0.232790 | 1.4:+9172971 | None:intergenic |
| CTTGCACAAGCCTAAATCTT+TGG | 0.243418 | 1.4:-9172291 | MS.gene021631:CDS |
| GGGTGAATTGGAAGAAATTT+TGG | 0.250951 | 1.4:-9172135 | MS.gene021631:CDS |
| GCCAGTCTCAAACCTGTAAT+TGG | 0.271717 | 1.4:-9171081 | MS.gene021631:CDS |
| TCTTTCTGACTATTTGTTAC+TGG | 0.282188 | 1.4:+9172170 | None:intergenic |
| TTGCACAAGCCTAAATCTTT+GGG | 0.291105 | 1.4:-9172290 | MS.gene021631:CDS |
| CCACCTAATTATAGGGCTAA+TGG | 0.304137 | 1.4:-9172737 | MS.gene021631:CDS |
| ACAGCAGTATTTCCAATTAC+AGG | 0.317685 | 1.4:+9171069 | None:intergenic |
| TAAGCGGTTTGTTAAAATAC+TGG | 0.331723 | 1.4:-9172193 | MS.gene021631:CDS |
| ACACCATTAGCCCTATAATT+AGG | 0.353783 | 1.4:+9172734 | None:intergenic |
| TGAGTTAAGTTTACAACTGC+TGG | 0.364055 | 1.4:+9171240 | None:intergenic |
| CAGCGGCACCCTGCGGTCGC+TGG | 0.367997 | 1.4:+9173065 | None:intergenic |
| TAATATCAGAAAGATGTTCT+TGG | 0.368168 | 1.4:-9171217 | MS.gene021631:CDS |
| TGGTGCATAGACCCGTTATT+CGG | 0.388557 | 1.4:-9172469 | MS.gene021631:CDS |
| TCGAGACGGCTCATCCGAAT+AGG | 0.409983 | 1.4:+9173120 | None:intergenic |
| ATTAATCGATTTCCGAATAA+CGG | 0.413381 | 1.4:+9172457 | None:intergenic |
| GAAGACATCGAAAACCTATT+CGG | 0.423211 | 1.4:-9173134 | MS.gene021631:CDS |
| TAACGGGATTGCTGAGTTGT+TGG | 0.427203 | 1.4:-9172396 | MS.gene021631:CDS |
| ATAACAATGCTTGCTAGCTT+CGG | 0.430662 | 1.4:+9172215 | None:intergenic |
| TTGATATTCTTATCTAGTGC+TGG | 0.438360 | 1.4:+9171276 | None:intergenic |
| TTAATCGATTTCCGAATAAC+GGG | 0.445669 | 1.4:+9172458 | None:intergenic |
| ATCCTATGTTTGATCCTGCT+TGG | 0.447732 | 1.4:-9172679 | MS.gene021631:CDS |
| ACAGTGGAACCATGATCCTT+TGG | 0.451226 | 1.4:+9172090 | None:intergenic |
| TAGGGTTTATGGGAAGTTCA+TGG | 0.454043 | 1.4:-9172489 | MS.gene021631:CDS |
| ATCTAGTGCTGGAAATATGA+TGG | 0.458021 | 1.4:+9171287 | None:intergenic |
| CGGCACCCTGCGGTCGCTGG+TGG | 0.458815 | 1.4:+9173068 | None:intergenic |
| AGATGTGAAAAGGAAAACTT+TGG | 0.460993 | 1.4:-9172861 | MS.gene021631:CDS |
| TCCAATTACAGGTTTGAGAC+TGG | 0.462838 | 1.4:+9171080 | None:intergenic |
| GGTCGTTGTTCCATAAGAAA+AGG | 0.470485 | 1.4:+9171352 | None:intergenic |
| CAGAAAGATGTTCTTGGAGA+TGG | 0.481131 | 1.4:-9171211 | MS.gene021631:CDS |
| TTCAAACAATCTCTTTCTCT+AGG | 0.484649 | 1.4:+9172524 | None:intergenic |
| AGTTGCAAATGTGGCCAAGC+AGG | 0.488605 | 1.4:+9172665 | None:intergenic |
| TAAAAGCCACCAGCGACCGC+AGG | 0.490732 | 1.4:-9173074 | MS.gene021631:CDS |
| TATTACGCAGTTCTTAGAAA+AGG | 0.492907 | 1.4:-9172240 | MS.gene021631:CDS |
| AGCTGTGTTTCCTGCCAGCA+TGG | 0.495905 | 1.4:-9173017 | MS.gene021631:CDS |
| ATCAAACAATTCAAGCAACT+TGG | 0.497011 | 1.4:+9172556 | None:intergenic |
| ACATTTGATTTCACTGATCC+TGG | 0.499527 | 1.4:-9172902 | MS.gene021631:CDS |
| CTACACATTGCAAGAATAGC+AGG | 0.504754 | 1.4:+9172791 | None:intergenic |
| TTCTCAGCAACATTCTTACC+AGG | 0.517344 | 1.4:+9172884 | None:intergenic |
| GTGCTGGAAATATGATGGGC+AGG | 0.517705 | 1.4:+9171292 | None:intergenic |
| TCATAAACAAGTTGCAAATG+TGG | 0.518027 | 1.4:+9172656 | None:intergenic |
| GGTTTCTGGTATTGAACCGT+TGG | 0.524898 | 1.4:-9172996 | MS.gene021631:CDS |
| GCTTGAATTGTTTGATTCTG+AGG | 0.525615 | 1.4:-9172549 | MS.gene021631:CDS |
| AAGATTTAGGCTTGTGCAAG+GGG | 0.529195 | 1.4:+9172294 | None:intergenic |
| GAGTTAAGTTTACAACTGCT+GGG | 0.529784 | 1.4:+9171241 | None:intergenic |
| TTCAACGTGTCTTGATGCTA+AGG | 0.531979 | 1.4:-9172612 | MS.gene021631:CDS |
| TCTCAGTTTCAATCACGAAT+CGG | 0.533096 | 1.4:+9172423 | None:intergenic |
| GTCGTTGTTCCATAAGAAAA+GGG | 0.533170 | 1.4:+9171353 | None:intergenic |
| ATTGAAACTGAGAAACATAA+CGG | 0.535729 | 1.4:-9172413 | MS.gene021631:CDS |
| ATTTGCTCTACCTTTGAAAG+AGG | 0.540618 | 1.4:-9172348 | MS.gene021631:CDS |
| TTGCTGAGAAAGATGTGAAA+AGG | 0.544023 | 1.4:-9172871 | MS.gene021631:CDS |
| AGTAACAAATAGTCAGAAAG+AGG | 0.549106 | 1.4:-9172168 | MS.gene021631:CDS |
| TTGAAACTGAGAAACATAAC+GGG | 0.549613 | 1.4:-9172412 | MS.gene021631:CDS |
| CCGAGAAGCGAAAGGAGGCA+TGG | 0.554722 | 1.4:-9171122 | MS.gene021631:CDS |
| ATAAGAATATCAAAAGCCAC+TGG | 0.557117 | 1.4:-9171266 | MS.gene021631:CDS |
| ATACCAGAAACCATGCTGGC+AGG | 0.558392 | 1.4:+9173007 | None:intergenic |
| TGATGGGCAGGATCACTTGA+CGG | 0.559231 | 1.4:+9171304 | None:intergenic |
| AAAGATTTAGGCTTGTGCAA+GGG | 0.560195 | 1.4:+9172293 | None:intergenic |
| GGTAGAGTTCCAAAGGATCA+TGG | 0.560709 | 1.4:-9172099 | MS.gene021631:CDS |
| TGCACAAGCCTAAATCTTTG+GGG | 0.562777 | 1.4:-9172289 | MS.gene021631:CDS |
| TCTAGTGCTGGAAATATGAT+GGG | 0.566737 | 1.4:+9171288 | None:intergenic |
| CAAAGATTTAGGCTTGTGCA+AGG | 0.572618 | 1.4:+9172292 | None:intergenic |
| GACTATTTCAGGTAGCTGAA+AGG | 0.579450 | 1.4:-9171377 | MS.gene021631:intron |
| CATGCAGTTCATGTCATCAA+AGG | 0.580056 | 1.4:+9171036 | None:intergenic |
| TTACAACTGCTGGGTTCCAG+TGG | 0.582552 | 1.4:+9171250 | None:intergenic |
| CTAGCAAGCATTGTTATAAG+CGG | 0.585033 | 1.4:-9172209 | MS.gene021631:CDS |
| AATGGTGTTGTTGCTAGTGG+TGG | 0.597850 | 1.4:-9172719 | MS.gene021631:CDS |
| TTAACATGGTAGAGTTCCAA+AGG | 0.605900 | 1.4:-9172106 | MS.gene021631:CDS |
| AAAAGCCACCAGCGACCGCA+GGG | 0.608551 | 1.4:-9173073 | MS.gene021631:CDS |
| GCACAAGCCTAAATCTTTGG+GGG | 0.609126 | 1.4:-9172288 | MS.gene021631:CDS |
| TAAGAACTGCGTAATACAGA+AGG | 0.612374 | 1.4:+9172247 | None:intergenic |
| GCTAATGGTGTTGTTGCTAG+TGG | 0.615309 | 1.4:-9172722 | MS.gene021631:CDS |
| CTCAGAAGCCGAGAAGCGAA+AGG | 0.616754 | 1.4:-9171130 | MS.gene021631:CDS |
| AGGAACACAAAATCTTCTTG+TGG | 0.618445 | 1.4:-9172328 | MS.gene021631:CDS |
| TTCAATACCAGAAACCATGC+TGG | 0.620617 | 1.4:+9173003 | None:intergenic |
| TTGTCATACTAACTTTAAGG+AGG | 0.630616 | 1.4:-9171169 | MS.gene021631:CDS |
| GAGCAATCAAATTTACAATG+TGG | 0.630738 | 1.4:+9171331 | None:intergenic |
| AGCTCGTTTCAACGAAGCAG+CGG | 0.634286 | 1.4:+9173048 | None:intergenic |
| CCATTAGCCCTATAATTAGG+TGG | 0.638080 | 1.4:+9172737 | None:intergenic |
| AGAAGCCGAGAAGCGAAAGG+AGG | 0.640183 | 1.4:-9171127 | MS.gene021631:CDS |
| AATCAAATGTCACACAACAA+AGG | 0.641518 | 1.4:+9172915 | None:intergenic |
| AATTACAGGTTTGAGACTGG+CGG | 0.648674 | 1.4:+9171083 | None:intergenic |
| AACGAAGCAGCGGCACCCTG+CGG | 0.649669 | 1.4:+9173058 | None:intergenic |
| ACATCCTTAAATGGCACCAA+CGG | 0.658669 | 1.4:+9172980 | None:intergenic |
| CGTGATGAATCAACTCGAGA+CGG | 0.663233 | 1.4:+9173106 | None:intergenic |
| GGCCAAGCAGGATCAAACAT+AGG | 0.678457 | 1.4:+9172677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTAAAGTAAATATAAT+TGG | + | chr1.4:9172360-9172379 | None:intergenic | 10.0% |
| !!! | TTTGAAAACAATTTTACATA+GGG | - | chr1.4:9171703-9171722 | MS.gene021631:intron | 15.0% |
| !! | ACTTATAATGACATATAGTT+GGG | + | chr1.4:9172393-9172412 | None:intergenic | 20.0% |
| !! | TAAATCATTTACTCAAACTA+AGG | + | chr1.4:9172650-9172669 | None:intergenic | 20.0% |
| !!! | GTTTGAAAACAATTTTACAT+AGG | - | chr1.4:9171702-9171721 | MS.gene021631:intron | 20.0% |
| !!! | TTTTAAAAAGTGCCAAAATA+CGG | + | chr1.4:9172747-9172766 | None:intergenic | 20.0% |
| ! | ACCATGTATTATACATTCAA+GGG | + | chr1.4:9172419-9172438 | None:intergenic | 25.0% |
| ! | ATCTTGTCATACTAACTTTA+AGG | - | chr1.4:9173038-9173057 | MS.gene021631:CDS | 25.0% |
| ! | ATTGAAACTGAGAAACATAA+CGG | - | chr1.4:9171797-9171816 | MS.gene021631:intron | 25.0% |
| ! | CAACTATATGTCATTATAAG+TGG | - | chr1.4:9172392-9172411 | MS.gene021631:CDS | 25.0% |
| ! | CACTTATAATGACATATAGT+TGG | + | chr1.4:9172394-9172413 | None:intergenic | 25.0% |
| ! | TAATATCAGAAAGATGTTCT+TGG | - | chr1.4:9172993-9173012 | MS.gene021631:CDS | 25.0% |
| !! | AATACATGGTGAATCTTTTT+GGG | - | chr1.4:9172429-9172448 | MS.gene021631:CDS | 25.0% |
| !! | ACAATTTTACATAGGGTTTA+TGG | - | chr1.4:9171710-9171729 | MS.gene021631:intron | 25.0% |
| !! | AGTTTTTCCACCTAATTATA+GGG | - | chr1.4:9171466-9171485 | MS.gene021631:intron | 25.0% |
| !! | ATTAATCGATTTCCGAATAA+CGG | + | chr1.4:9171756-9171775 | None:intergenic | 25.0% |
| !! | CAATTTTACATAGGGTTTAT+GGG | - | chr1.4:9171711-9171730 | MS.gene021631:intron | 25.0% |
| !! | TAATACATGGTGAATCTTTT+TGG | - | chr1.4:9172428-9172447 | MS.gene021631:CDS | 25.0% |
| !!! | AATTTTGGAAGCAATTAACA+TGG | - | chr1.4:9172090-9172109 | MS.gene021631:CDS | 25.0% |
| !!! | AGTTGGATTTTAATCTATTC+TGG | - | chr1.4:9172523-9172542 | MS.gene021631:CDS | 25.0% |
| !!! | ATGTTGTTTTTCCATTCAAA+AGG | - | chr1.4:9172243-9172262 | MS.gene021631:CDS | 25.0% |
| !!! | ATTCTTTTTTCTGTTCATCA+TGG | - | chr1.4:9172811-9172830 | MS.gene021631:CDS | 25.0% |
| !!! | TTTAAAAAGTGCCAAAATAC+GGG | + | chr1.4:9172746-9172765 | None:intergenic | 25.0% |
| AATCAAATGTCACACAACAA+AGG | + | chr1.4:9171298-9171317 | None:intergenic | 30.0% | |
| AGATGTGAAAAGGAAAACTT+TGG | - | chr1.4:9171349-9171368 | MS.gene021631:CDS | 30.0% | |
| AGTAACAAATAGTCAGAAAG+AGG | - | chr1.4:9172042-9172061 | MS.gene021631:intron | 30.0% | |
| ATAAGAATATCAAAAGCCAC+TGG | - | chr1.4:9172944-9172963 | MS.gene021631:CDS | 30.0% | |
| ATAATGACATATAGTTGGGT+AGG | + | chr1.4:9172389-9172408 | None:intergenic | 30.0% | |
| ATCAAACAATTCAAGCAACT+TGG | + | chr1.4:9171657-9171676 | None:intergenic | 30.0% | |
| CACCATGTATTATACATTCA+AGG | + | chr1.4:9172420-9172439 | None:intergenic | 30.0% | |
| GAGCAATCAAATTTACAATG+TGG | + | chr1.4:9172882-9172901 | None:intergenic | 30.0% | |
| TATTACGCAGTTCTTAGAAA+AGG | - | chr1.4:9171970-9171989 | MS.gene021631:intron | 30.0% | |
| TCATAAACAAGTTGCAAATG+TGG | + | chr1.4:9171557-9171576 | None:intergenic | 30.0% | |
| TCCCTTGAATGTATAATACA+TGG | - | chr1.4:9172415-9172434 | MS.gene021631:CDS | 30.0% | |
| TTCAAACAATCTCTTTCTCT+AGG | + | chr1.4:9171689-9171708 | None:intergenic | 30.0% | |
| TTGAAACTGAGAAACATAAC+GGG | - | chr1.4:9171798-9171817 | MS.gene021631:intron | 30.0% | |
| TTGATATTCTTATCTAGTGC+TGG | + | chr1.4:9172937-9172956 | None:intergenic | 30.0% | |
| ! | AAGTTCATCTTTTCAGCATT+TGG | + | chr1.4:9171257-9171276 | None:intergenic | 30.0% |
| ! | ATACATGGTGAATCTTTTTG+GGG | - | chr1.4:9172430-9172449 | MS.gene021631:CDS | 30.0% |
| ! | ATTTTGTGTTCCTCTTTCAA+AGG | + | chr1.4:9171875-9171894 | None:intergenic | 30.0% |
| ! | GAGTTTTTCCACCTAATTAT+AGG | - | chr1.4:9171465-9171484 | MS.gene021631:intron | 30.0% |
| ! | TCTTTCTGACTATTTGTTAC+TGG | + | chr1.4:9172043-9172062 | None:intergenic | 30.0% |
| ! | TTAATCGATTTCCGAATAAC+GGG | + | chr1.4:9171755-9171774 | None:intergenic | 30.0% |
| ! | TTATGCATCTGTAGCATTTT+TGG | - | chr1.4:9172696-9172715 | MS.gene021631:CDS | 30.0% |
| ! | TTGTCATACTAACTTTAAGG+AGG | - | chr1.4:9173041-9173060 | MS.gene021631:CDS | 30.0% |
| !! | ACAATTTTACCTGAAAGTGT+AGG | + | chr1.4:9172174-9172193 | None:intergenic | 30.0% |
| !! | TAAGCGGTTTGTTAAAATAC+TGG | - | chr1.4:9172017-9172036 | MS.gene021631:intron | 30.0% |
| AAAGATTTAGGCTTGTGCAA+GGG | + | chr1.4:9171920-9171939 | None:intergenic | 35.0% | |
| AATACGGGCAAAAGATTACT+AGG | + | chr1.4:9172731-9172750 | None:intergenic | 35.0% | |
| ACACCATTAGCCCTATAATT+AGG | + | chr1.4:9171479-9171498 | None:intergenic | 35.0% | |
| ACAGCAGTATTTCCAATTAC+AGG | + | chr1.4:9173144-9173163 | None:intergenic | 35.0% | |
| ACCATGCAAACTATAGATCA+AGG | + | chr1.4:9172281-9172300 | None:intergenic | 35.0% | |
| AGGAACACAAAATCTTCTTG+TGG | - | chr1.4:9171882-9171901 | MS.gene021631:intron | 35.0% | |
| ATACGGGCAAAAGATTACTA+GGG | + | chr1.4:9172730-9172749 | None:intergenic | 35.0% | |
| ATGCTACAGATGCATAAAGA+TGG | + | chr1.4:9172693-9172712 | None:intergenic | 35.0% | |
| GAAGACATCGAAAACCTATT+CGG | - | chr1.4:9171076-9171095 | MS.gene021631:CDS | 35.0% | |
| GAGTTAAGTTTACAACTGCT+GGG | + | chr1.4:9172972-9172991 | None:intergenic | 35.0% | |
| GCAAACTATAGATCAAGGAA+TGG | + | chr1.4:9172276-9172295 | None:intergenic | 35.0% | |
| GCTTGAATTGTTTGATTCTG+AGG | - | chr1.4:9171661-9171680 | MS.gene021631:intron | 35.0% | |
| GTCGTTGTTCCATAAGAAAA+GGG | + | chr1.4:9172860-9172879 | None:intergenic | 35.0% | |
| TAAGAACTGCGTAATACAGA+AGG | + | chr1.4:9171966-9171985 | None:intergenic | 35.0% | |
| TATTAACAGCCTACACTTTC+AGG | - | chr1.4:9172162-9172181 | MS.gene021631:CDS | 35.0% | |
| TCTCAGTTTCAATCACGAAT+CGG | + | chr1.4:9171790-9171809 | None:intergenic | 35.0% | |
| TGAGTTAAGTTTACAACTGC+TGG | + | chr1.4:9172973-9172992 | None:intergenic | 35.0% | |
| TGCTACAGATGCATAAAGAT+GGG | + | chr1.4:9172692-9172711 | None:intergenic | 35.0% | |
| TTAACAGACTAGCATGTCAA+CGG | + | chr1.4:9172781-9172800 | None:intergenic | 35.0% | |
| TTAACATGGTAGAGTTCCAA+AGG | - | chr1.4:9172104-9172123 | MS.gene021631:CDS | 35.0% | |
| TTGCACAAGCCTAAATCTTT+GGG | - | chr1.4:9171920-9171939 | MS.gene021631:intron | 35.0% | |
| TTGCTGAGAAAGATGTGAAA+AGG | - | chr1.4:9171339-9171358 | MS.gene021631:CDS | 35.0% | |
| ! | AAATTTTCAACAAGCTTCCC+CGG | - | chr1.4:9171054-9171073 | MS.gene021631:CDS | 35.0% |
| ! | AATAGGTTTTCGATGTCTTC+CGG | + | chr1.4:9171076-9171095 | None:intergenic | 35.0% |
| ! | ACATTTGATTTCACTGATCC+TGG | - | chr1.4:9171308-9171327 | MS.gene021631:CDS | 35.0% |
| ! | ATAACAATGCTTGCTAGCTT+CGG | + | chr1.4:9171998-9172017 | None:intergenic | 35.0% |
| ! | ATCTAGTGCTGGAAATATGA+TGG | + | chr1.4:9172926-9172945 | None:intergenic | 35.0% |
| ! | ATGGATCTGATCCTTTTGAA+TGG | + | chr1.4:9172257-9172276 | None:intergenic | 35.0% |
| ! | ATTTGCTCTACCTTTGAAAG+AGG | - | chr1.4:9171862-9171881 | MS.gene021631:intron | 35.0% |
| ! | CAGAAAGAGGTGATGTTTTT+GGG | - | chr1.4:9172055-9172074 | MS.gene021631:CDS | 35.0% |
| ! | CTAGCAAGCATTGTTATAAG+CGG | - | chr1.4:9172001-9172020 | MS.gene021631:intron | 35.0% |
| ! | GCATTTGGAACATCCTTAAA+TGG | + | chr1.4:9171242-9171261 | None:intergenic | 35.0% |
| ! | GGGTGAATTGGAAGAAATTT+TGG | - | chr1.4:9172075-9172094 | MS.gene021631:CDS | 35.0% |
| ! | GTAATCTTTTGCCCGTATTT+TGG | - | chr1.4:9172732-9172751 | MS.gene021631:CDS | 35.0% |
| ! | TCAGAAAGAGGTGATGTTTT+TGG | - | chr1.4:9172054-9172073 | MS.gene021631:CDS | 35.0% |
| ! | TCCTTGATCTATAGTTTGCA+TGG | - | chr1.4:9172277-9172296 | MS.gene021631:CDS | 35.0% |
| ! | TCTAGTGCTGGAAATATGAT+GGG | + | chr1.4:9172925-9172944 | None:intergenic | 35.0% |
| ! | TGTTCATCATGGACTATTTC+AGG | - | chr1.4:9172822-9172841 | MS.gene021631:CDS | 35.0% |
| !!! | GGTTGAACTTGTTGATTTTG+TGG | - | chr1.4:9171370-9171389 | MS.gene021631:intron | 35.0% |
| AAGATTTAGGCTTGTGCAAG+GGG | + | chr1.4:9171919-9171938 | None:intergenic | 40.0% | |
| AAGTAGACCCCCAAAGATTT+AGG | + | chr1.4:9171932-9171951 | None:intergenic | 40.0% | |
| ACATCCTTAAATGGCACCAA+CGG | + | chr1.4:9171233-9171252 | None:intergenic | 40.0% | |
| ATCCTATGTTTGATCCTGCT+TGG | - | chr1.4:9171531-9171550 | MS.gene021631:intron | 40.0% | |
| CAAAGATTTAGGCTTGTGCA+AGG | + | chr1.4:9171921-9171940 | None:intergenic | 40.0% | |
| CAGAAAGATGTTCTTGGAGA+TGG | - | chr1.4:9172999-9173018 | MS.gene021631:CDS | 40.0% | |
| CCACCTAATTATAGGGCTAA+TGG | - | chr1.4:9171473-9171492 | MS.gene021631:intron | 40.0% | |
| CCATTAGCCCTATAATTAGG+TGG | + | chr1.4:9171476-9171495 | None:intergenic | 40.0% | |
| CTACACATTGCAAGAATAGC+AGG | + | chr1.4:9171422-9171441 | None:intergenic | 40.0% | |
| CTTGCACAAGCCTAAATCTT+TGG | - | chr1.4:9171919-9171938 | MS.gene021631:intron | 40.0% | |
| GAGATTTGCAGTTGCTTCAT+TGG | - | chr1.4:9172452-9172471 | MS.gene021631:CDS | 40.0% | |
| GGTCGTTGTTCCATAAGAAA+AGG | + | chr1.4:9172861-9172880 | None:intergenic | 40.0% | |
| TAGGGTTTATGGGAAGTTCA+TGG | - | chr1.4:9171721-9171740 | MS.gene021631:intron | 40.0% | |
| TGCACAAGCCTAAATCTTTG+GGG | - | chr1.4:9171921-9171940 | MS.gene021631:intron | 40.0% | |
| TTCAACGTGTCTTGATGCTA+AGG | - | chr1.4:9171598-9171617 | MS.gene021631:intron | 40.0% | |
| TTCAATACCAGAAACCATGC+TGG | + | chr1.4:9171210-9171229 | None:intergenic | 40.0% | |
| TTCTCAGCAACATTCTTACC+AGG | + | chr1.4:9171329-9171348 | None:intergenic | 40.0% | |
| TTCTTAAAACTCCTCGATCC+TGG | - | chr1.4:9172593-9172612 | MS.gene021631:CDS | 40.0% | |
| TTTCACTCCATAGAGATTCC+AGG | + | chr1.4:9172614-9172633 | None:intergenic | 40.0% | |
| ! | AATTACAGGTTTGAGACTGG+CGG | + | chr1.4:9173130-9173149 | None:intergenic | 40.0% |
| ! | ATAGGTTTTCGATGTCTTCC+GGG | + | chr1.4:9171075-9171094 | None:intergenic | 40.0% |
| ! | CTGAAAGGACCCTTTTCTTA+TGG | - | chr1.4:9172848-9172867 | MS.gene021631:CDS | 40.0% |
| ! | CTGAGTTGTTGGAGATTTTC+GGG | - | chr1.4:9171825-9171844 | MS.gene021631:intron | 40.0% |
| ! | GACTATTTCAGGTAGCTGAA+AGG | - | chr1.4:9172833-9172852 | MS.gene021631:CDS | 40.0% |
| ! | GCTGAGTTGTTGGAGATTTT+CGG | - | chr1.4:9171824-9171843 | MS.gene021631:intron | 40.0% |
| ! | TCCAACTTGAGTTTTCAACC+AGG | + | chr1.4:9172510-9172529 | None:intergenic | 40.0% |
| ! | TCCAATTACAGGTTTGAGAC+TGG | + | chr1.4:9173133-9173152 | None:intergenic | 40.0% |
| ! | TTGAGTTTTCAACCAGGCAA+AGG | + | chr1.4:9172504-9172523 | None:intergenic | 40.0% |
| !! | ATTTTCGGGAGTGTGATTAG+TGG | - | chr1.4:9171839-9171858 | MS.gene021631:intron | 40.0% |
| !!! | CTTGTTGATTTTGTGGCTTG+TGG | - | chr1.4:9171377-9171396 | MS.gene021631:intron | 40.0% |
| !!! | GGTGATGTTTTTGGGTGAAT+TGG | - | chr1.4:9172063-9172082 | MS.gene021631:CDS | 40.0% |
| !!! | TCATGGTTCCACTGTTTTTG+CGG | - | chr1.4:9172128-9172147 | MS.gene021631:CDS | 40.0% |
| ACAGTGGAACCATGATCCTT+TGG | + | chr1.4:9172123-9172142 | None:intergenic | 45.0% | |
| CGTGATGAATCAACTCGAGA+CGG | + | chr1.4:9171107-9171126 | None:intergenic | 45.0% | |
| GCACAAGCCTAAATCTTTGG+GGG | - | chr1.4:9171922-9171941 | MS.gene021631:intron | 45.0% | |
| GCCAGTCTCAAACCTGTAAT+TGG | - | chr1.4:9173129-9173148 | MS.gene021631:CDS | 45.0% | |
| GCCTGGTTGAAAACTCAAGT+TGG | - | chr1.4:9172506-9172525 | MS.gene021631:CDS | 45.0% | |
| GGTAGAGTTCCAAAGGATCA+TGG | - | chr1.4:9172111-9172130 | MS.gene021631:CDS | 45.0% | |
| TAACGGGATTGCTGAGTTGT+TGG | - | chr1.4:9171814-9171833 | MS.gene021631:intron | 45.0% | |
| TGGTGCATAGACCCGTTATT+CGG | - | chr1.4:9171741-9171760 | MS.gene021631:intron | 45.0% | |
| ! | GTTTTCAACCAGGCAAAGGA+CGG | + | chr1.4:9172500-9172519 | None:intergenic | 45.0% |
| ! | TAGGTTTTCGATGTCTTCCG+GGG | + | chr1.4:9171074-9171093 | None:intergenic | 45.0% |
| !! | AATGGTGTTGTTGCTAGTGG+TGG | - | chr1.4:9171491-9171510 | MS.gene021631:intron | 45.0% |
| !! | GCTAATGGTGTTGTTGCTAG+TGG | - | chr1.4:9171488-9171507 | MS.gene021631:intron | 45.0% |
| !! | GGTTTCTGGTATTGAACCGT+TGG | - | chr1.4:9171214-9171233 | MS.gene021631:CDS | 45.0% |
| !! | TGAACCGTTGGTGCCATTTA+AGG | - | chr1.4:9171226-9171245 | MS.gene021631:CDS | 45.0% |
| !!! | GTTCCACTGTTTTTGCGGAT+CGG | - | chr1.4:9172133-9172152 | MS.gene021631:CDS | 45.0% |
| !!! | TTCCACTGTTTTTGCGGATC+GGG | - | chr1.4:9172134-9172153 | MS.gene021631:CDS | 45.0% |
| AGCTCGTTTCAACGAAGCAG+CGG | + | chr1.4:9171165-9171184 | None:intergenic | 50.0% | |
| AGTTGCAAATGTGGCCAAGC+AGG | + | chr1.4:9171548-9171567 | None:intergenic | 50.0% | |
| ATACCAGAAACCATGCTGGC+AGG | + | chr1.4:9171206-9171225 | None:intergenic | 50.0% | |
| CCATAGAGATTCCAGGATCG+AGG | + | chr1.4:9172607-9172626 | None:intergenic | 50.0% | |
| CCTCGATCCTGGAATCTCTA+TGG | - | chr1.4:9172604-9172623 | MS.gene021631:CDS | 50.0% | |
| GGCCAAGCAGGATCAAACAT+AGG | + | chr1.4:9171536-9171555 | None:intergenic | 50.0% | |
| TTACAACTGCTGGGTTCCAG+TGG | + | chr1.4:9172963-9172982 | None:intergenic | 50.0% | |
| TTTCCTGCCAGCATGGTTTC+TGG | - | chr1.4:9171200-9171219 | MS.gene021631:CDS | 50.0% | |
| ! | TGATGGGCAGGATCACTTGA+CGG | + | chr1.4:9172909-9172928 | None:intergenic | 50.0% |
| !! | GTGCTGGAAATATGATGGGC+AGG | + | chr1.4:9172921-9172940 | None:intergenic | 50.0% |
| AGAAGCCGAGAAGCGAAAGG+AGG | - | chr1.4:9173083-9173102 | MS.gene021631:CDS | 55.0% | |
| AGCTGTGTTTCCTGCCAGCA+TGG | - | chr1.4:9171193-9171212 | MS.gene021631:CDS | 55.0% | |
| CACCCGATCCGCAAAAACAG+TGG | + | chr1.4:9172139-9172158 | None:intergenic | 55.0% | |
| CCATGCCTCCTTTCGCTTCT+CGG | + | chr1.4:9173091-9173110 | None:intergenic | 55.0% | |
| CTCAGAAGCCGAGAAGCGAA+AGG | - | chr1.4:9173080-9173099 | MS.gene021631:CDS | 55.0% | |
| TCGAGACGGCTCATCCGAAT+AGG | + | chr1.4:9171093-9171112 | None:intergenic | 55.0% | |
| AAAAGCCACCAGCGACCGCA+GGG | - | chr1.4:9171137-9171156 | MS.gene021631:CDS | 60.0% | |
| CCGAGAAGCGAAAGGAGGCA+TGG | - | chr1.4:9173088-9173107 | MS.gene021631:CDS | 60.0% | |
| TAAAAGCCACCAGCGACCGC+AGG | - | chr1.4:9171136-9171155 | MS.gene021631:CDS | 60.0% | |
| TCATCGCACCGTCCTTTGCC+TGG | - | chr1.4:9172489-9172508 | MS.gene021631:CDS | 60.0% | |
| AACGAAGCAGCGGCACCCTG+CGG | + | chr1.4:9171155-9171174 | None:intergenic | 65.0% | |
| ! | CAGCGGCACCCTGCGGTCGC+TGG | + | chr1.4:9171148-9171167 | None:intergenic | 80.0% |
| ! | CGGCACCCTGCGGTCGCTGG+TGG | + | chr1.4:9171145-9171164 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 9171044 | 9173188 | 9171044 | ID=MS.gene021631 |
| chr1.4 | mRNA | 9171044 | 9173188 | 9171044 | ID=MS.gene021631.t1;Parent=MS.gene021631 |
| chr1.4 | exon | 9172049 | 9173188 | 9172049 | ID=MS.gene021631.t1.exon1;Parent=MS.gene021631.t1 |
| chr1.4 | CDS | 9172049 | 9173188 | 9172049 | ID=cds.MS.gene021631.t1;Parent=MS.gene021631.t1 |
| chr1.4 | exon | 9171044 | 9171388 | 9171044 | ID=MS.gene021631.t1.exon2;Parent=MS.gene021631.t1 |
| chr1.4 | CDS | 9171044 | 9171388 | 9171044 | ID=cds.MS.gene021631.t1;Parent=MS.gene021631.t1 |
| Gene Sequence |
| Protein sequence |
