Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022654.t1 | XP_024627785.1 | 85.8 | 282 | 39 | 1 | 1 | 282 | 1 | 281 | 1.10E-130 | 476.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022654.t1 | Q8S9K8 | 42.6 | 258 | 142 | 3 | 27 | 282 | 21 | 274 | 7.4e-54 | 212.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022654.t1 | A0A396GD32 | 85.8 | 282 | 39 | 1 | 1 | 282 | 1 | 281 | 8.2e-131 | 476.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene022654 | MS.gene010412 | PPI |
MS.gene87350 | MS.gene022654 | PPI |
MS.gene022654 | MS.gene041151 | PPI |
MS.gene28543 | MS.gene022654 | PPI |
MS.gene022654 | MS.gene011884 | PPI |
MS.gene022654 | MS.gene047689 | PPI |
MS.gene022654 | MS.gene44962 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022654.t1 | MTR_8g007675 | 84.884 | 258 | 38 | 1 | 25 | 282 | 30 | 286 | 7.38e-162 | 451 |
MS.gene022654.t1 | MTR_8g007670 | 76.172 | 256 | 61 | 0 | 27 | 282 | 7 | 262 | 1.70e-147 | 414 |
MS.gene022654.t1 | MTR_8g008505 | 63.958 | 283 | 99 | 3 | 1 | 282 | 1 | 281 | 4.40e-127 | 363 |
MS.gene022654.t1 | MTR_8g008660 | 63.830 | 282 | 98 | 2 | 1 | 282 | 1 | 278 | 2.53e-125 | 358 |
MS.gene022654.t1 | MTR_8g007670 | 69.141 | 256 | 35 | 1 | 27 | 282 | 7 | 218 | 2.46e-124 | 353 |
MS.gene022654.t1 | MTR_8g008500 | 62.456 | 285 | 103 | 3 | 1 | 282 | 1 | 284 | 8.39e-124 | 355 |
MS.gene022654.t1 | MTR_3g464040 | 63.838 | 271 | 94 | 2 | 12 | 282 | 4 | 270 | 2.07e-121 | 348 |
MS.gene022654.t1 | MTR_5g018320 | 51.341 | 261 | 124 | 3 | 23 | 282 | 1 | 259 | 5.74e-93 | 275 |
MS.gene022654.t1 | MTR_5g018300 | 52.529 | 257 | 119 | 3 | 27 | 282 | 8 | 262 | 2.22e-91 | 271 |
MS.gene022654.t1 | MTR_5g018280 | 49.027 | 257 | 127 | 4 | 27 | 282 | 8 | 261 | 2.09e-79 | 241 |
MS.gene022654.t1 | MTR_8g079120 | 41.860 | 258 | 140 | 5 | 27 | 282 | 11 | 260 | 4.44e-65 | 204 |
MS.gene022654.t1 | MTR_5g018365 | 41.473 | 258 | 141 | 5 | 27 | 282 | 12 | 261 | 4.39e-62 | 197 |
MS.gene022654.t1 | MTR_5g018350 | 39.922 | 258 | 145 | 6 | 27 | 282 | 7 | 256 | 2.56e-56 | 182 |
MS.gene022654.t1 | MTR_8g079120 | 45.679 | 162 | 82 | 3 | 27 | 186 | 53 | 210 | 5.41e-45 | 151 |
MS.gene022654.t1 | MTR_7g015220 | 36.078 | 255 | 154 | 5 | 27 | 279 | 124 | 371 | 8.00e-45 | 155 |
MS.gene022654.t1 | MTR_5g068100 | 35.391 | 243 | 150 | 4 | 27 | 268 | 30 | 266 | 4.09e-44 | 151 |
MS.gene022654.t1 | MTR_3g093730 | 35.802 | 243 | 148 | 4 | 27 | 268 | 36 | 271 | 2.20e-42 | 147 |
MS.gene022654.t1 | MTR_3g005410 | 32.824 | 262 | 168 | 3 | 20 | 279 | 87 | 342 | 4.01e-42 | 148 |
MS.gene022654.t1 | MTR_3g093730 | 30.992 | 242 | 116 | 5 | 27 | 268 | 36 | 226 | 6.70e-29 | 110 |
MS.gene022654.t1 | MTR_5g008130 | 44.737 | 76 | 42 | 0 | 207 | 282 | 5 | 80 | 4.89e-16 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022654.t1 | AT3G50440 | 42.802 | 257 | 141 | 3 | 28 | 282 | 22 | 274 | 5.49e-70 | 218 |
MS.gene022654.t1 | AT2G23620 | 41.699 | 259 | 143 | 5 | 27 | 282 | 9 | 262 | 1.12e-62 | 198 |
MS.gene022654.t1 | AT2G23600 | 41.699 | 259 | 143 | 5 | 27 | 282 | 9 | 262 | 5.22e-62 | 197 |
MS.gene022654.t1 | AT2G23600 | 41.699 | 259 | 143 | 5 | 27 | 282 | 24 | 277 | 7.17e-62 | 197 |
MS.gene022654.t1 | AT2G23610 | 43.023 | 258 | 137 | 6 | 29 | 282 | 11 | 262 | 9.07e-62 | 196 |
MS.gene022654.t1 | AT2G23580 | 40.076 | 262 | 150 | 4 | 24 | 282 | 5 | 262 | 6.72e-58 | 186 |
MS.gene022654.t1 | AT2G23550 | 39.544 | 263 | 150 | 5 | 24 | 282 | 12 | 269 | 2.05e-57 | 185 |
MS.gene022654.t1 | AT2G23550 | 39.544 | 263 | 150 | 5 | 24 | 282 | 5 | 262 | 2.10e-57 | 185 |
MS.gene022654.t1 | AT5G10300 | 39.844 | 256 | 150 | 2 | 27 | 282 | 6 | 257 | 4.28e-57 | 184 |
MS.gene022654.t1 | AT2G23590 | 38.760 | 258 | 143 | 5 | 27 | 282 | 27 | 271 | 6.10e-57 | 184 |
MS.gene022654.t1 | AT4G37150 | 37.597 | 258 | 154 | 4 | 27 | 282 | 3 | 255 | 7.61e-56 | 181 |
MS.gene022654.t1 | AT2G23560 | 39.394 | 264 | 146 | 8 | 24 | 282 | 5 | 259 | 2.81e-55 | 179 |
MS.gene022654.t1 | AT5G58310 | 35.632 | 261 | 153 | 4 | 27 | 279 | 5 | 258 | 7.39e-49 | 163 |
MS.gene022654.t1 | AT1G33990 | 34.902 | 255 | 158 | 4 | 27 | 279 | 97 | 345 | 5.18e-47 | 160 |
MS.gene022654.t1 | AT3G29770 | 38.189 | 254 | 150 | 4 | 27 | 279 | 138 | 385 | 6.95e-47 | 161 |
MS.gene022654.t1 | AT4G16690 | 36.822 | 258 | 142 | 5 | 27 | 277 | 12 | 255 | 1.14e-46 | 157 |
MS.gene022654.t1 | AT2G23610 | 37.743 | 257 | 111 | 6 | 27 | 282 | 9 | 217 | 1.27e-46 | 155 |
MS.gene022654.t1 | AT4G09900 | 33.465 | 254 | 161 | 4 | 28 | 279 | 99 | 346 | 1.64e-45 | 157 |
MS.gene022654.t1 | AT1G26360 | 36.614 | 254 | 154 | 4 | 27 | 279 | 189 | 436 | 2.18e-45 | 159 |
MS.gene022654.t1 | AT2G23550 | 35.115 | 262 | 134 | 5 | 24 | 282 | 5 | 233 | 2.00e-43 | 148 |
MS.gene022654.t1 | AT1G69240 | 34.510 | 255 | 158 | 5 | 28 | 279 | 188 | 436 | 4.15e-43 | 152 |
MS.gene022654.t1 | AT3G10870 | 33.745 | 243 | 157 | 4 | 27 | 268 | 20 | 259 | 2.14e-42 | 147 |
MS.gene022654.t1 | AT2G23600 | 44.785 | 163 | 86 | 3 | 27 | 186 | 24 | 185 | 1.58e-41 | 142 |
MS.gene022654.t1 | AT2G23550 | 44.242 | 165 | 87 | 3 | 24 | 184 | 12 | 175 | 2.23e-39 | 137 |
MS.gene022654.t1 | AT2G23580 | 42.771 | 166 | 92 | 2 | 24 | 186 | 5 | 170 | 3.88e-39 | 136 |
MS.gene022654.t1 | AT5G10300 | 41.358 | 162 | 95 | 0 | 27 | 188 | 6 | 167 | 4.76e-38 | 133 |
MS.gene022654.t1 | AT4G37140 | 51.456 | 103 | 50 | 0 | 27 | 129 | 3 | 105 | 5.10e-36 | 125 |
MS.gene022654.t1 | AT2G23570 | 37.912 | 182 | 107 | 4 | 103 | 282 | 1 | 178 | 2.66e-30 | 112 |
MS.gene022654.t1 | AT4G37140 | 50.000 | 90 | 45 | 0 | 27 | 116 | 3 | 92 | 4.58e-30 | 109 |
MS.gene022654.t1 | AT3G29770 | 52.055 | 73 | 35 | 0 | 27 | 99 | 138 | 210 | 2.26e-19 | 85.9 |
Find 53 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAACCATTGATGACATTTA+TGG | 0.079683 | 8.4:+79044091 | MS.gene022654:CDS |
CATCTTGGATGCCATGAATT+TGG | 0.134984 | 8.4:-79044618 | None:intergenic |
TAGAAGGATTAGTTCTTTAA+TGG | 0.232720 | 8.4:+79044535 | MS.gene022654:CDS |
GCACAATTAACACAAATTAT+AGG | 0.265798 | 8.4:-79043906 | None:intergenic |
TAAATCAGCATCGCTCAAAA+AGG | 0.284700 | 8.4:-79050575 | None:intergenic |
TGAATCTCTTGTACCTGAAT+TGG | 0.306427 | 8.4:-79044050 | None:intergenic |
ACTATTGAATTGGCTGGTTC+AGG | 0.333088 | 8.4:+79044020 | MS.gene022654:CDS |
ATCTTGGATGCCATGAATTT+GGG | 0.341185 | 8.4:-79044617 | None:intergenic |
TAATGTTACAACTATTGAAT+TGG | 0.359160 | 8.4:+79044010 | MS.gene022654:CDS |
CAAACCTGCAACTGCTAGAT+TGG | 0.368595 | 8.4:+79044589 | MS.gene022654:CDS |
CTAGCAGTTGCAGGTTTGTT+GGG | 0.377021 | 8.4:-79044584 | None:intergenic |
TGTACCTCTTGAAGAACAAC+TGG | 0.381557 | 8.4:-79044260 | None:intergenic |
TTCAGGTATCAATCCAATTC+AGG | 0.386595 | 8.4:+79044037 | MS.gene022654:CDS |
GCAAACTTTGTGCTGATTCA+TGG | 0.390525 | 8.4:+79043927 | MS.gene022654:CDS |
TCTAGCAGTTGCAGGTTTGT+TGG | 0.395041 | 8.4:-79044585 | None:intergenic |
TGGTGCATGGTGTTGGTATA+AGG | 0.400591 | 8.4:+79043959 | MS.gene022654:CDS |
ATTGGTTGGACCCAAATTCA+TGG | 0.411752 | 8.4:+79044607 | MS.gene022654:CDS |
CCAACCAATCTAGCAGTTGC+AGG | 0.423936 | 8.4:-79044593 | None:intergenic |
AAATTTATAAGATGATGAAA+AGG | 0.434435 | 8.4:+79043841 | None:intergenic |
AAGGAAAAGGTGATTCTTGT+TGG | 0.440376 | 8.4:+79044128 | MS.gene022654:CDS |
CTTGTTGGTCATAGTCTTGG+TGG | 0.441219 | 8.4:+79044143 | MS.gene022654:CDS |
ATTCTTGTTGGTCATAGTCT+TGG | 0.443284 | 8.4:+79044140 | MS.gene022654:CDS |
CCATCATGTAGCAAGCTAGA+AGG | 0.455347 | 8.4:+79044519 | MS.gene022654:intron |
GTTACAACTATTGAATTGGC+TGG | 0.461529 | 8.4:+79044014 | MS.gene022654:CDS |
ATCTCTTCCTCCAAAGGAAA+AGG | 0.464266 | 8.4:+79044115 | MS.gene022654:CDS |
GATCGAGGGTTCAGATCATA+TGG | 0.477216 | 8.4:+79050741 | MS.gene022654:CDS |
CCTGCAACTGCTAGATTGGT+TGG | 0.480634 | 8.4:+79044593 | MS.gene022654:CDS |
TTGTTGGTCATAGTCTTGGT+GGG | 0.483396 | 8.4:+79044144 | MS.gene022654:CDS |
AATTTATAAGATGATGAAAA+GGG | 0.497143 | 8.4:+79043842 | None:intergenic |
GAATGGATAATTGAGACAAC+CGG | 0.517534 | 8.4:+79050697 | MS.gene022654:CDS |
TGGTGATAATTGATACATCT+TGG | 0.534510 | 8.4:-79044633 | None:intergenic |
GATTCCATAAATGTCATCAA+TGG | 0.541738 | 8.4:-79044095 | None:intergenic |
TATGGAATCTCTTCCTCCAA+AGG | 0.542372 | 8.4:+79044109 | MS.gene022654:CDS |
CTGATTCATGGTGGAAGCCA+TGG | 0.542667 | 8.4:+79043939 | MS.gene022654:CDS |
GGTGTCCACATCTGTTGCTA+TGG | 0.544684 | 8.4:+79044166 | MS.gene022654:CDS |
GCAACTATGCTGAAATCTGC+TGG | 0.549763 | 8.4:+79043984 | MS.gene022654:CDS |
TTTCACTTTAGCATATGGAC+CGG | 0.551824 | 8.4:-79050716 | None:intergenic |
GAAGCCATGGTGCATGGTGT+TGG | 0.558171 | 8.4:+79043952 | MS.gene022654:CDS |
ATACCCAGTTGTTCTTCAAG+AGG | 0.566134 | 8.4:+79044256 | MS.gene022654:CDS |
TGTTGGTCATAGTCTTGGTG+GGG | 0.581014 | 8.4:+79044145 | MS.gene022654:CDS |
ATTAACATATATACCTCAGA+TGG | 0.582287 | 8.4:-79044653 | None:intergenic |
GAAGAACAACTGGGTATGAG+AGG | 0.584782 | 8.4:-79044250 | None:intergenic |
TGCTAAAGTGAAAATGATCG+AGG | 0.599047 | 8.4:+79050726 | MS.gene022654:CDS |
ACTGTTACAAATGAAAACAA+TGG | 0.604853 | 8.4:+79050613 | MS.gene022654:CDS |
GCTAAAGTGAAAATGATCGA+GGG | 0.635853 | 8.4:+79050727 | MS.gene022654:CDS |
TACAAATGAAAACAATGGAA+TGG | 0.636369 | 8.4:+79050618 | MS.gene022654:CDS |
ATGGTGGAAGCCATGGTGCA+TGG | 0.643508 | 8.4:+79043946 | MS.gene022654:CDS |
TATACCAACACCATGCACCA+TGG | 0.667607 | 8.4:-79043956 | None:intergenic |
AACTTTGTGCTGATTCATGG+TGG | 0.673588 | 8.4:+79043930 | MS.gene022654:CDS |
GTATCAATTATCACCATCTG+AGG | 0.677571 | 8.4:+79044640 | MS.gene022654:CDS |
ATAACAAAAGAATGTGCACA+AGG | 0.695826 | 8.4:-79043872 | None:intergenic |
GTACCTCTTGAAGAACAACT+GGG | 0.719501 | 8.4:-79044259 | None:intergenic |
TGCATGGTGTTGGTATAAGG+TGG | 0.723340 | 8.4:+79043962 | MS.gene022654:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 79043852 | 79050825 | 79043852 | ID=MS.gene022654 |
chr8.4 | mRNA | 79043852 | 79050825 | 79043852 | ID=MS.gene022654.t1;Parent=MS.gene022654 |
chr8.4 | exon | 79043852 | 79044277 | 79043852 | ID=MS.gene022654.t1.exon1;Parent=MS.gene022654.t1 |
chr8.4 | CDS | 79043852 | 79044277 | 79043852 | ID=cds.MS.gene022654.t1;Parent=MS.gene022654.t1 |
chr8.4 | exon | 79044530 | 79044661 | 79044530 | ID=MS.gene022654.t1.exon2;Parent=MS.gene022654.t1 |
chr8.4 | CDS | 79044530 | 79044661 | 79044530 | ID=cds.MS.gene022654.t1;Parent=MS.gene022654.t1 |
chr8.4 | exon | 79050535 | 79050825 | 79050535 | ID=MS.gene022654.t1.exon3;Parent=MS.gene022654.t1 |
chr8.4 | CDS | 79050535 | 79050825 | 79050535 | ID=cds.MS.gene022654.t1;Parent=MS.gene022654.t1 |
Gene Sequence |
Protein sequence |