Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022655.t1 | XP_003626737.1 | 87 | 238 | 31 | 0 | 1 | 238 | 47 | 284 | 1.20E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022655.t1 | Q6RYA0 | 40.8 | 238 | 137 | 3 | 1 | 238 | 26 | 259 | 1.5e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022655.t1 | G7LBP1 | 87.0 | 238 | 31 | 0 | 1 | 238 | 47 | 284 | 8.8e-110 | 406.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047689 | MS.gene022655 | PPI |
| MS.gene87350 | MS.gene022655 | PPI |
| MS.gene022655 | MS.gene041151 | PPI |
| MS.gene011884 | MS.gene022655 | PPI |
| MS.gene44962 | MS.gene022655 | PPI |
| MS.gene010412 | MS.gene022655 | PPI |
| MS.gene28543 | MS.gene022655 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022655.t1 | MTR_8g008500 | 93.277 | 238 | 16 | 0 | 1 | 238 | 47 | 284 | 1.47e-163 | 453 |
| MS.gene022655.t1 | MTR_8g008505 | 86.555 | 238 | 28 | 2 | 1 | 238 | 48 | 281 | 3.36e-150 | 419 |
| MS.gene022655.t1 | MTR_8g008660 | 76.471 | 238 | 50 | 2 | 1 | 238 | 47 | 278 | 3.33e-128 | 363 |
| MS.gene022655.t1 | MTR_3g464040 | 74.790 | 238 | 54 | 2 | 1 | 238 | 39 | 270 | 8.22e-125 | 355 |
| MS.gene022655.t1 | MTR_8g007675 | 68.908 | 238 | 71 | 2 | 1 | 238 | 52 | 286 | 7.81e-115 | 330 |
| MS.gene022655.t1 | MTR_8g007670 | 53.782 | 238 | 106 | 3 | 2 | 238 | 28 | 262 | 3.45e-85 | 254 |
| MS.gene022655.t1 | MTR_5g018320 | 52.720 | 239 | 108 | 4 | 1 | 238 | 25 | 259 | 5.77e-79 | 238 |
| MS.gene022655.t1 | MTR_5g018300 | 52.301 | 239 | 109 | 4 | 1 | 238 | 28 | 262 | 8.52e-79 | 238 |
| MS.gene022655.t1 | MTR_5g018280 | 51.046 | 239 | 111 | 5 | 1 | 238 | 28 | 261 | 2.94e-74 | 226 |
| MS.gene022655.t1 | MTR_8g007670 | 46.218 | 238 | 80 | 3 | 2 | 238 | 28 | 218 | 4.85e-67 | 206 |
| MS.gene022655.t1 | MTR_8g079120 | 37.553 | 237 | 140 | 5 | 2 | 238 | 32 | 260 | 1.52e-47 | 158 |
| MS.gene022655.t1 | MTR_5g018365 | 38.655 | 238 | 136 | 6 | 2 | 238 | 33 | 261 | 6.06e-47 | 156 |
| MS.gene022655.t1 | MTR_5g018350 | 37.131 | 237 | 141 | 5 | 2 | 238 | 28 | 256 | 4.33e-43 | 146 |
| MS.gene022655.t1 | MTR_5g008130 | 76.623 | 77 | 18 | 0 | 162 | 238 | 4 | 80 | 4.56e-38 | 128 |
| MS.gene022655.t1 | MTR_5g068100 | 34.874 | 238 | 148 | 4 | 1 | 238 | 50 | 280 | 1.50e-35 | 127 |
| MS.gene022655.t1 | MTR_3g093730 | 35.294 | 238 | 140 | 5 | 1 | 235 | 56 | 282 | 1.66e-31 | 117 |
| MS.gene022655.t1 | MTR_7g015220 | 34.361 | 227 | 142 | 4 | 1 | 227 | 144 | 363 | 5.81e-29 | 112 |
| MS.gene022655.t1 | MTR_8g079120 | 40.000 | 145 | 82 | 3 | 2 | 146 | 74 | 213 | 7.52e-28 | 105 |
| MS.gene022655.t1 | MTR_3g005410 | 29.536 | 237 | 159 | 4 | 1 | 236 | 114 | 343 | 5.34e-25 | 101 |
| MS.gene022655.t1 | MTR_3g093730 | 30.579 | 242 | 101 | 7 | 1 | 235 | 56 | 237 | 2.81e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022655.t1 | AT3G50440 | 39.662 | 237 | 139 | 3 | 2 | 238 | 42 | 274 | 9.72e-54 | 174 |
| MS.gene022655.t1 | AT2G23610 | 40.084 | 237 | 138 | 3 | 2 | 238 | 30 | 262 | 1.91e-51 | 168 |
| MS.gene022655.t1 | AT2G23620 | 39.754 | 244 | 131 | 5 | 1 | 238 | 29 | 262 | 5.53e-48 | 159 |
| MS.gene022655.t1 | AT2G23600 | 38.235 | 238 | 143 | 3 | 1 | 238 | 29 | 262 | 3.39e-46 | 154 |
| MS.gene022655.t1 | AT2G23580 | 39.583 | 240 | 136 | 7 | 2 | 238 | 29 | 262 | 5.10e-46 | 154 |
| MS.gene022655.t1 | AT2G23600 | 38.235 | 238 | 143 | 3 | 1 | 238 | 44 | 277 | 5.39e-46 | 154 |
| MS.gene022655.t1 | AT2G23590 | 36.975 | 238 | 137 | 7 | 1 | 238 | 47 | 271 | 4.81e-42 | 144 |
| MS.gene022655.t1 | AT4G37150 | 36.555 | 238 | 146 | 4 | 1 | 238 | 23 | 255 | 1.37e-41 | 142 |
| MS.gene022655.t1 | AT2G23550 | 36.667 | 240 | 143 | 7 | 2 | 238 | 29 | 262 | 7.65e-41 | 141 |
| MS.gene022655.t1 | AT2G23550 | 36.667 | 240 | 143 | 7 | 2 | 238 | 36 | 269 | 1.11e-40 | 140 |
| MS.gene022655.t1 | AT2G23560 | 36.667 | 240 | 140 | 6 | 2 | 238 | 29 | 259 | 3.32e-39 | 136 |
| MS.gene022655.t1 | AT2G23610 | 34.874 | 238 | 104 | 6 | 2 | 238 | 30 | 217 | 4.33e-35 | 124 |
| MS.gene022655.t1 | AT5G10300 | 34.034 | 238 | 151 | 5 | 1 | 238 | 26 | 257 | 4.70e-34 | 123 |
| MS.gene022655.t1 | AT1G33990 | 33.054 | 239 | 146 | 5 | 2 | 236 | 118 | 346 | 8.02e-34 | 124 |
| MS.gene022655.t1 | AT4G09900 | 31.799 | 239 | 149 | 5 | 2 | 236 | 119 | 347 | 2.69e-33 | 123 |
| MS.gene022655.t1 | AT3G10870 | 33.191 | 235 | 153 | 3 | 1 | 235 | 40 | 270 | 1.66e-32 | 119 |
| MS.gene022655.t1 | AT1G26360 | 34.177 | 237 | 147 | 5 | 1 | 236 | 209 | 437 | 2.33e-32 | 122 |
| MS.gene022655.t1 | AT5G58310 | 30.738 | 244 | 148 | 7 | 2 | 235 | 26 | 258 | 3.63e-31 | 115 |
| MS.gene022655.t1 | AT4G16690 | 32.636 | 239 | 142 | 8 | 1 | 234 | 32 | 256 | 6.03e-31 | 115 |
| MS.gene022655.t1 | AT3G29770 | 35.833 | 240 | 139 | 6 | 1 | 236 | 158 | 386 | 6.32e-30 | 115 |
| MS.gene022655.t1 | AT1G69240 | 32.353 | 238 | 152 | 6 | 1 | 236 | 207 | 437 | 2.19e-29 | 114 |
| MS.gene022655.t1 | AT2G23550 | 31.799 | 239 | 127 | 6 | 2 | 238 | 29 | 233 | 2.47e-28 | 107 |
| MS.gene022655.t1 | AT2G23570 | 36.111 | 180 | 112 | 2 | 59 | 238 | 2 | 178 | 3.43e-28 | 105 |
| MS.gene022655.t1 | AT2G23600 | 39.860 | 143 | 85 | 1 | 1 | 143 | 44 | 185 | 4.52e-27 | 103 |
| MS.gene022655.t1 | AT2G23580 | 40.141 | 142 | 81 | 4 | 2 | 141 | 29 | 168 | 2.53e-23 | 94.0 |
| MS.gene022655.t1 | AT5G10300 | 36.552 | 145 | 89 | 3 | 1 | 145 | 26 | 167 | 1.36e-20 | 86.7 |
| MS.gene022655.t1 | AT4G37140 | 46.429 | 84 | 44 | 1 | 1 | 84 | 23 | 105 | 1.96e-20 | 84.3 |
| MS.gene022655.t1 | AT2G23550 | 37.324 | 142 | 85 | 4 | 2 | 141 | 36 | 175 | 2.76e-20 | 85.9 |
| MS.gene022655.t1 | AT4G37140 | 43.662 | 71 | 39 | 1 | 1 | 71 | 23 | 92 | 8.21e-15 | 68.6 |
Find 52 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTTTGATATCATTTA+TGG | 0.078023 | 8.4:+79039654 | MS.gene022655:CDS |
| CCTCCAACTGCCTTGTTGTT+TGG | 0.223716 | 8.4:+79040555 | MS.gene022655:CDS |
| CCACAGTTATTCTTCTTTGA+TGG | 0.234931 | 8.4:+79040522 | MS.gene022655:CDS |
| ATTCTTGTGGGTCATAGTTT+TGG | 0.257233 | 8.4:+79039703 | MS.gene022655:CDS |
| TTAGAGAGGATCTGCAATTA+TGG | 0.262915 | 8.4:+79041240 | MS.gene022655:CDS |
| GAAGTAAACTAGTGAAATTA+AGG | 0.299802 | 8.4:-79039813 | None:intergenic |
| TAATGTTAGCACAATTGATT+TGG | 0.307926 | 8.4:+79039570 | MS.gene022655:CDS |
| ATCACTTTCACTTCAACATA+TGG | 0.320896 | 8.4:-79041281 | None:intergenic |
| TTGGAAATAATGAAGACTTT+TGG | 0.329148 | 8.4:-79041203 | None:intergenic |
| TGAATCTCTTGGACCTGTAT+TGG | 0.346355 | 8.4:-79039610 | None:intergenic |
| ACAAGAATCACCTTCTCCTT+TGG | 0.362247 | 8.4:-79039688 | None:intergenic |
| TCTAATGAAAATGTCTCCTT+TGG | 0.376102 | 8.4:-79041222 | None:intergenic |
| TACCCTTCCATTCCTCTGCT+TGG | 0.389684 | 8.4:-79041180 | None:intergenic |
| ACAATTGATTTGGCTGCTTC+AGG | 0.390868 | 8.4:+79039580 | MS.gene022655:CDS |
| AAGGCAGTTGGAGGACTGTT+TGG | 0.392141 | 8.4:-79040546 | None:intergenic |
| TGTTGAAGTGAAAGTGATAA+AGG | 0.400092 | 8.4:+79041286 | MS.gene022655:CDS |
| AAGATTAAATTCCAGTCAAC+AGG | 0.402609 | 8.4:+79040494 | MS.gene022655:CDS |
| AAATATTTGAATGAATCTCT+TGG | 0.405238 | 8.4:-79039621 | None:intergenic |
| TTTGACACTTGGGTCATCAT+TGG | 0.414427 | 8.4:+79041100 | MS.gene022655:CDS |
| GTTGTTTGGATCTAAACTCT+TGG | 0.419417 | 8.4:+79040569 | MS.gene022655:CDS |
| CATGCGCAGGATTTGACACT+TGG | 0.438141 | 8.4:+79041089 | MS.gene022655:intron |
| AGAATCACCTTCTCCTTTGG+AGG | 0.473413 | 8.4:-79039685 | None:intergenic |
| AGCAGTCTTTAGAATGTAAG+AGG | 0.485742 | 8.4:-79041351 | None:intergenic |
| TTTCACTAGTTTACTTCAAG+AGG | 0.486049 | 8.4:+79039819 | MS.gene022655:CDS |
| GATACCCTTATCTGTTGCTA+TGG | 0.489986 | 8.4:+79039729 | MS.gene022655:CDS |
| AAGGAGAAGGTGATTCTTGT+GGG | 0.501737 | 8.4:+79039691 | MS.gene022655:CDS |
| GCAACTATGCTTAAATCAGC+TGG | 0.513884 | 8.4:+79039544 | None:intergenic |
| TTCAGGCATCAATCCAATAC+AGG | 0.517321 | 8.4:+79039597 | MS.gene022655:CDS |
| AAAGTCTTCATTATTTCCAA+AGG | 0.521901 | 8.4:+79041206 | MS.gene022655:CDS |
| TCGTCATTAAAGATAGGATG+TGG | 0.526108 | 8.4:-79041128 | None:intergenic |
| TTATGGATAATTGAGAGAAC+GGG | 0.528041 | 8.4:+79041257 | MS.gene022655:CDS |
| GATCCAAACAACAAGGCAGT+TGG | 0.532373 | 8.4:-79040558 | None:intergenic |
| AGGGTTACCAAGCAGAGGAA+TGG | 0.542457 | 8.4:+79041173 | MS.gene022655:CDS |
| ATTATGGATAATTGAGAGAA+CGG | 0.544632 | 8.4:+79041256 | MS.gene022655:CDS |
| AAAGGAGAAGGTGATTCTTG+TGG | 0.544745 | 8.4:+79039690 | MS.gene022655:CDS |
| AATTGGTGTTGAAAGAAACA+AGG | 0.546326 | 8.4:+79041153 | MS.gene022655:CDS |
| GTATCAATTATCGCCTAATG+AGG | 0.552044 | 8.4:+79040602 | MS.gene022655:CDS |
| ATCTCTTCCTCCAAAGGAGA+AGG | 0.557078 | 8.4:+79039678 | MS.gene022655:CDS |
| CTGTGGTGGATCCTGTTGAC+TGG | 0.559384 | 8.4:-79040505 | None:intergenic |
| TATGGAATCTCTTCCTCCAA+AGG | 0.561902 | 8.4:+79039672 | MS.gene022655:CDS |
| CCAAACAACAAGGCAGTTGG+AGG | 0.578597 | 8.4:-79040555 | None:intergenic |
| ATTGGTGTTGAAAGAAACAA+GGG | 0.588772 | 8.4:+79041154 | MS.gene022655:CDS |
| TTACCAAGCAGAGGAATGGA+AGG | 0.593361 | 8.4:+79041177 | MS.gene022655:CDS |
| TCAAAGAAGAATAACTGTGG+TGG | 0.601293 | 8.4:-79040519 | None:intergenic |
| CACTTGGGTCATCATTGGTG+AGG | 0.603881 | 8.4:+79041105 | MS.gene022655:CDS |
| GATTCCATAAATGATATCAA+AGG | 0.612866 | 8.4:-79039658 | None:intergenic |
| ATGCGCAGGATTTGACACTT+GGG | 0.634134 | 8.4:+79041090 | MS.gene022655:intron |
| AAACAAGGGTTACCAAGCAG+AGG | 0.650857 | 8.4:+79041168 | MS.gene022655:CDS |
| GATAAAGGATTCAGATCACA+TGG | 0.658047 | 8.4:+79041301 | MS.gene022655:CDS |
| TACCAAGCAGAGGAATGGAA+GGG | 0.694878 | 8.4:+79041178 | MS.gene022655:CDS |
| GAGTTTAGATCCAAACAACA+AGG | 0.704963 | 8.4:-79040565 | None:intergenic |
| CCATCAAAGAAGAATAACTG+TGG | 0.722018 | 8.4:-79040522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATATTAATAAAAATT+AGG | + | chr8.4:79040044-79040063 | MS.gene022655:intron | 0.0% |
| !! | AAAAAAATAATCAAATTCAA+AGG | - | chr8.4:79040088-79040107 | None:intergenic | 10.0% |
| !! | AATCCAAAATTAAAATTATT+AGG | + | chr8.4:79040255-79040274 | MS.gene022655:intron | 10.0% |
| !! | ATATAAATATTATATAACCA+TGG | - | chr8.4:79040033-79040052 | None:intergenic | 10.0% |
| !! | ATCCAAAATTAAAATTATTA+GGG | + | chr8.4:79040256-79040275 | MS.gene022655:intron | 10.0% |
| !!! | AAAAACCTAAAATATTTTAA+TGG | + | chr8.4:79040365-79040384 | MS.gene022655:intron | 10.0% |
| !!! | AAAATCCATTAAAATATTTT+AGG | - | chr8.4:79040373-79040392 | None:intergenic | 10.0% |
| !!! | TAATTGAAAATTTGAAATAA+AGG | + | chr8.4:79040640-79040659 | MS.gene022655:intron | 10.0% |
| !! | CTGTTAAAAATAATTTATCT+AGG | + | chr8.4:79040839-79040858 | MS.gene022655:intron | 15.0% |
| !! | TAATATAATATGGTATGTTA+AGG | - | chr8.4:79041020-79041039 | None:intergenic | 15.0% |
| !!! | AAATGTTGTTTTTTTAAAAC+TGG | - | chr8.4:79040165-79040184 | None:intergenic | 15.0% |
| !!! | AACCCTAATAATTTTAATTT+TGG | - | chr8.4:79040261-79040280 | None:intergenic | 15.0% |
| !!! | AATGTTGTTTTTTTAAAACT+GGG | - | chr8.4:79040164-79040183 | None:intergenic | 15.0% |
| !!! | GGATTTTAATTTCTAATAAA+AGG | - | chr8.4:79040240-79040259 | None:intergenic | 15.0% |
| !! | AAATATTTGAATGAATCTCT+TGG | - | chr8.4:79039624-79039643 | None:intergenic | 20.0% |
| !! | AACAAAAAAATTACCTCATT+AGG | - | chr8.4:79040618-79040637 | None:intergenic | 20.0% |
| !! | AATAAAGTCAAAATATGTGA+TGG | + | chr8.4:79039875-79039894 | MS.gene022655:intron | 20.0% |
| !! | TATCTTTAATGACGAAAAAT+TGG | + | chr8.4:79041136-79041155 | MS.gene022655:CDS | 20.0% |
| !! | TCCTTAAAAAAGAATAAACT+TGG | + | chr8.4:79040332-79040351 | MS.gene022655:intron | 20.0% |
| !! | TCTATTATTCAAGAAAAAGA+GGG | - | chr8.4:79039944-79039963 | None:intergenic | 20.0% |
| !! | TTCTATTATTCAAGAAAAAG+AGG | - | chr8.4:79039945-79039964 | None:intergenic | 20.0% |
| !!! | AAATATGTGATGGATTAATA+AGG | + | chr8.4:79039885-79039904 | MS.gene022655:intron | 20.0% |
| !!! | AATATTTTAGGTTTTTTCAG+AGG | - | chr8.4:79040361-79040380 | None:intergenic | 20.0% |
| !!! | AATTTTTCGTCATTAAAGAT+AGG | - | chr8.4:79041137-79041156 | None:intergenic | 20.0% |
| !!! | CTGAGTTTTAATTTTAATTG+TGG | + | chr8.4:79040406-79040425 | MS.gene022655:intron | 20.0% |
| !!! | CTTTTTTCCTTCAAAAAAAA+AGG | + | chr8.4:79039915-79039934 | MS.gene022655:intron | 20.0% |
| !!! | TCCAAGTTTATTCTTTTTTA+AGG | - | chr8.4:79040336-79040355 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAGGAAAAAAGA+GGG | - | chr8.4:79039914-79039933 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGAAGGAAAAAAG+AGG | - | chr8.4:79039915-79039934 | None:intergenic | 20.0% |
| ! | AAAGTCTTCATTATTTCCAA+AGG | + | chr8.4:79041206-79041225 | MS.gene022655:CDS | 25.0% |
| ! | AATAGAATAAAGTCTTGATC+TGG | + | chr8.4:79039958-79039977 | MS.gene022655:intron | 25.0% |
| ! | ATTATGGATAATTGAGAGAA+CGG | + | chr8.4:79041256-79041275 | MS.gene022655:CDS | 25.0% |
| ! | CGATTAAACTTCAAATCATT+AGG | + | chr8.4:79040920-79040939 | MS.gene022655:intron | 25.0% |
| ! | GAAGTAAACTAGTGAAATTA+AGG | - | chr8.4:79039816-79039835 | None:intergenic | 25.0% |
| ! | GATTCCATAAATGATATCAA+AGG | - | chr8.4:79039661-79039680 | None:intergenic | 25.0% |
| ! | TAATGTTAGCACAATTGATT+TGG | + | chr8.4:79039570-79039589 | MS.gene022655:CDS | 25.0% |
| ! | TGAACCTTTGATATCATTTA+TGG | + | chr8.4:79039654-79039673 | MS.gene022655:CDS | 25.0% |
| ! | TTAAACTTCAAATCATTAGG+AGG | + | chr8.4:79040923-79040942 | MS.gene022655:intron | 25.0% |
| !! | TTGGAAATAATGAAGACTTT+TGG | - | chr8.4:79041206-79041225 | None:intergenic | 25.0% |
| AAGATTAAATTCCAGTCAAC+AGG | + | chr8.4:79040494-79040513 | MS.gene022655:CDS | 30.0% | |
| ATCACTTTCACTTCAACATA+TGG | - | chr8.4:79041284-79041303 | None:intergenic | 30.0% | |
| ATGGTTACTAACATCTACAA+TGG | - | chr8.4:79040014-79040033 | None:intergenic | 30.0% | |
| ATTGTAGATGTTAGTAACCA+TGG | + | chr8.4:79040013-79040032 | MS.gene022655:intron | 30.0% | |
| TAATCTTCTCTGATTCTATG+AGG | - | chr8.4:79040481-79040500 | None:intergenic | 30.0% | |
| TCTAATGAAAATGTCTCCTT+TGG | - | chr8.4:79041225-79041244 | None:intergenic | 30.0% | |
| TGTTGAAGTGAAAGTGATAA+AGG | + | chr8.4:79041286-79041305 | MS.gene022655:CDS | 30.0% | |
| TTATGGATAATTGAGAGAAC+GGG | + | chr8.4:79041257-79041276 | MS.gene022655:CDS | 30.0% | |
| ! | ATGTAAGAGGTAAGCTTTTT+AGG | - | chr8.4:79041341-79041360 | None:intergenic | 30.0% |
| ! | TTTCACTAGTTTACTTCAAG+AGG | + | chr8.4:79039819-79039838 | MS.gene022655:CDS | 30.0% |
| ! | TTTTCCATAGCAACAGATAA+GGG | - | chr8.4:79039736-79039755 | None:intergenic | 30.0% |
| !! | AATTGGTGTTGAAAGAAACA+AGG | + | chr8.4:79041153-79041172 | MS.gene022655:CDS | 30.0% |
| !! | ATTGGTGTTGAAAGAAACAA+GGG | + | chr8.4:79041154-79041173 | MS.gene022655:CDS | 30.0% |
| !!! | AGGGTAACCTTTTTTTTTGA+AGG | - | chr8.4:79039925-79039944 | None:intergenic | 30.0% |
| ACATTGAAGCCAATCATTGA+TGG | + | chr8.4:79041063-79041082 | MS.gene022655:intron | 35.0% | |
| AGAATAAAGTCTTGATCTGG+TGG | + | chr8.4:79039961-79039980 | MS.gene022655:intron | 35.0% | |
| CCACAGTTATTCTTCTTTGA+TGG | + | chr8.4:79040522-79040541 | MS.gene022655:CDS | 35.0% | |
| CCATCAAAGAAGAATAACTG+TGG | - | chr8.4:79040525-79040544 | None:intergenic | 35.0% | |
| GAATAAAGTCTTGATCTGGT+GGG | + | chr8.4:79039962-79039981 | MS.gene022655:intron | 35.0% | |
| GAGTTTAGATCCAAACAACA+AGG | - | chr8.4:79040568-79040587 | None:intergenic | 35.0% | |
| GATAAAGGATTCAGATCACA+TGG | + | chr8.4:79041301-79041320 | MS.gene022655:CDS | 35.0% | |
| GTATCAATTATCGCCTAATG+AGG | + | chr8.4:79040602-79040621 | MS.gene022655:CDS | 35.0% | |
| GTTGTTTGGATCTAAACTCT+TGG | + | chr8.4:79040569-79040588 | MS.gene022655:CDS | 35.0% | |
| TCAAAGAAGAATAACTGTGG+TGG | - | chr8.4:79040522-79040541 | None:intergenic | 35.0% | |
| TCGTCATTAAAGATAGGATG+TGG | - | chr8.4:79041131-79041150 | None:intergenic | 35.0% | |
| TTAGAGAGGATCTGCAATTA+TGG | + | chr8.4:79041240-79041259 | MS.gene022655:CDS | 35.0% | |
| ! | ACTGCAAGAGAAATTTTCTC+AGG | - | chr8.4:79039763-79039782 | None:intergenic | 35.0% |
| ! | AGGAGACATTTTCATTAGAG+AGG | + | chr8.4:79041226-79041245 | MS.gene022655:CDS | 35.0% |
| ! | ATTCTTGTGGGTCATAGTTT+TGG | + | chr8.4:79039703-79039722 | MS.gene022655:CDS | 35.0% |
| ! | CTGCAAGAGAAATTTTCTCA+GGG | - | chr8.4:79039762-79039781 | None:intergenic | 35.0% |
| ! | CTTTTCCATAGCAACAGATA+AGG | - | chr8.4:79039737-79039756 | None:intergenic | 35.0% |
| !! | AGCAGTCTTTAGAATGTAAG+AGG | - | chr8.4:79041354-79041373 | None:intergenic | 35.0% |
| !!! | AGAGGTAAGCTTTTTAGGTT+TGG | - | chr8.4:79041336-79041355 | None:intergenic | 35.0% |
| AAAGGAGAAGGTGATTCTTG+TGG | + | chr8.4:79039690-79039709 | MS.gene022655:CDS | 40.0% | |
| AAGGAGAAGGTGATTCTTGT+GGG | + | chr8.4:79039691-79039710 | MS.gene022655:CDS | 40.0% | |
| ACAAGAATCACCTTCTCCTT+TGG | - | chr8.4:79039691-79039710 | None:intergenic | 40.0% | |
| CGCATGTAACCATCAATGAT+TGG | - | chr8.4:79041075-79041094 | None:intergenic | 40.0% | |
| GATACCCTTATCTGTTGCTA+TGG | + | chr8.4:79039729-79039748 | MS.gene022655:CDS | 40.0% | |
| TATGGAATCTCTTCCTCCAA+AGG | + | chr8.4:79039672-79039691 | MS.gene022655:CDS | 40.0% | |
| TGAATCTCTTGGACCTGTAT+TGG | - | chr8.4:79039613-79039632 | None:intergenic | 40.0% | |
| TTCAGGCATCAATCCAATAC+AGG | + | chr8.4:79039597-79039616 | MS.gene022655:CDS | 40.0% | |
| TTTGACACTTGGGTCATCAT+TGG | + | chr8.4:79041100-79041119 | MS.gene022655:CDS | 40.0% | |
| !! | ACAATTGATTTGGCTGCTTC+AGG | + | chr8.4:79039580-79039599 | MS.gene022655:CDS | 40.0% |
| !!! | TTGTGGGTCATAGTTTTGGA+GGG | + | chr8.4:79039707-79039726 | MS.gene022655:CDS | 40.0% |
| AAACAAGGGTTACCAAGCAG+AGG | + | chr8.4:79041168-79041187 | MS.gene022655:CDS | 45.0% | |
| AGAATCACCTTCTCCTTTGG+AGG | - | chr8.4:79039688-79039707 | None:intergenic | 45.0% | |
| ATCTCTTCCTCCAAAGGAGA+AGG | + | chr8.4:79039678-79039697 | MS.gene022655:CDS | 45.0% | |
| ATGCGCAGGATTTGACACTT+GGG | + | chr8.4:79041090-79041109 | MS.gene022655:intron | 45.0% | |
| GATCCAAACAACAAGGCAGT+TGG | - | chr8.4:79040561-79040580 | None:intergenic | 45.0% | |
| TACCAAGCAGAGGAATGGAA+GGG | + | chr8.4:79041178-79041197 | MS.gene022655:CDS | 45.0% | |
| TTACCAAGCAGAGGAATGGA+AGG | + | chr8.4:79041177-79041196 | MS.gene022655:CDS | 45.0% | |
| ! | TCATTGATGGTTACATGCGC+AGG | + | chr8.4:79041076-79041095 | MS.gene022655:intron | 45.0% |
| !!! | CTTGTGGGTCATAGTTTTGG+AGG | + | chr8.4:79039706-79039725 | MS.gene022655:CDS | 45.0% |
| !! | ATGTATAATATAATATAATA+TGG | - | chr8.4:79041030-79041049 | None:intergenic | 5.0% |
| !!! | AATATTTAATTTCTAATAAA+AGG | - | chr8.4:79040209-79040228 | None:intergenic | 5.0% |
| !!! | TAATATGATTTTTTTTATAA+AGG | - | chr8.4:79040119-79040138 | None:intergenic | 5.0% |
| AAGGCAGTTGGAGGACTGTT+TGG | - | chr8.4:79040549-79040568 | None:intergenic | 50.0% | |
| AGGGTTACCAAGCAGAGGAA+TGG | + | chr8.4:79041173-79041192 | MS.gene022655:CDS | 50.0% | |
| CACTTGGGTCATCATTGGTG+AGG | + | chr8.4:79041105-79041124 | MS.gene022655:CDS | 50.0% | |
| CATGCGCAGGATTTGACACT+TGG | + | chr8.4:79041089-79041108 | MS.gene022655:intron | 50.0% | |
| CCAAACAACAAGGCAGTTGG+AGG | - | chr8.4:79040558-79040577 | None:intergenic | 50.0% | |
| TACCCTTCCATTCCTCTGCT+TGG | - | chr8.4:79041183-79041202 | None:intergenic | 50.0% | |
| !! | CCTCCAACTGCCTTGTTGTT+TGG | + | chr8.4:79040555-79040574 | MS.gene022655:CDS | 50.0% |
| !! | CTGTGGTGGATCCTGTTGAC+TGG | - | chr8.4:79040508-79040527 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 79039550 | 79041385 | 79039550 | ID=MS.gene022655 |
| chr8.4 | mRNA | 79039550 | 79041385 | 79039550 | ID=MS.gene022655.t1;Parent=MS.gene022655 |
| chr8.4 | exon | 79039550 | 79039840 | 79039550 | ID=MS.gene022655.t1.exon1;Parent=MS.gene022655.t1 |
| chr8.4 | CDS | 79039550 | 79039840 | 79039550 | ID=cds.MS.gene022655.t1;Parent=MS.gene022655.t1 |
| chr8.4 | exon | 79040486 | 79040623 | 79040486 | ID=MS.gene022655.t1.exon2;Parent=MS.gene022655.t1 |
| chr8.4 | CDS | 79040486 | 79040623 | 79040486 | ID=cds.MS.gene022655.t1;Parent=MS.gene022655.t1 |
| chr8.4 | exon | 79041098 | 79041385 | 79041098 | ID=MS.gene022655.t1.exon3;Parent=MS.gene022655.t1 |
| chr8.4 | CDS | 79041098 | 79041385 | 79041098 | ID=cds.MS.gene022655.t1;Parent=MS.gene022655.t1 |
| Gene Sequence |
| Protein sequence |
