Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022825.t1 | XP_024628177.1 | 96.8 | 217 | 7 | 0 | 1 | 217 | 1 | 217 | 3.80E-110 | 407.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022825.t1 | Q08069 | 84.5 | 219 | 31 | 2 | 1 | 216 | 1 | 219 | 2.5e-94 | 346.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022825.t1 | G7LF60 | 96.7 | 215 | 7 | 0 | 3 | 217 | 74 | 288 | 5.2e-109 | 403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013335 | MS.gene022825 | PPI |
| MS.gene23040 | MS.gene022825 | PPI |
| MS.gene06433 | MS.gene022825 | PPI |
| MS.gene30990 | MS.gene022825 | PPI |
| MS.gene049306 | MS.gene022825 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022825.t1 | MTR_8g012330 | 96.744 | 215 | 7 | 0 | 3 | 217 | 74 | 288 | 8.12e-154 | 428 |
| MS.gene022825.t1 | MTR_4g016670 | 85.417 | 192 | 28 | 0 | 26 | 217 | 26 | 217 | 7.40e-121 | 342 |
| MS.gene022825.t1 | MTR_7g053450 | 87.097 | 217 | 28 | 0 | 1 | 217 | 1 | 217 | 9.60e-121 | 342 |
| MS.gene022825.t1 | MTR_8g012325 | 85.366 | 205 | 28 | 1 | 1 | 205 | 1 | 203 | 3.77e-113 | 322 |
| MS.gene022825.t1 | MTR_4g016663 | 69.880 | 83 | 24 | 1 | 136 | 217 | 5 | 87 | 2.36e-34 | 118 |
| MS.gene022825.t1 | MTR_4g016620 | 68.966 | 58 | 17 | 1 | 137 | 193 | 21 | 78 | 1.35e-19 | 80.5 |
| MS.gene022825.t1 | MTR_4g016610 | 51.190 | 84 | 25 | 1 | 134 | 217 | 1042 | 1109 | 1.42e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022825.t1 | AT5G59240 | 78.537 | 205 | 35 | 1 | 1 | 205 | 1 | 196 | 6.32e-112 | 319 |
| MS.gene022825.t1 | AT5G20290 | 76.190 | 210 | 45 | 1 | 1 | 205 | 1 | 210 | 1.01e-101 | 293 |
Find 49 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACTATGGTGTTGAAAT+TGG | 0.226186 | 8.1:+84740103 | MS.gene022825:CDS |
| AAAGAAAATTGCTGCCAAAA+AGG | 0.311588 | 8.1:+84740132 | MS.gene022825:CDS |
| TAACCATGTGCTGAGGAAAT+TGG | 0.317141 | 8.1:+84740573 | MS.gene022825:CDS |
| CTTGATAGCTTGGTGTTAGC+TGG | 0.334031 | 8.1:-84739854 | None:intergenic |
| TGGATTATGCAGCTACGTTT+TGG | 0.358703 | 8.1:+84740788 | MS.gene022825:intron |
| CCAGAGATAGGAGGACAAAA+AGG | 0.366469 | 8.1:+84738635 | MS.gene022825:CDS |
| CTCGACCTGGTCAATGTGGC+AGG | 0.375397 | 8.1:+84740677 | MS.gene022825:CDS |
| AGTTCGCACAAGCTCATTGT+TGG | 0.390463 | 8.1:-84740017 | None:intergenic |
| GGTCAATGTGGCAGGGCTGA+TGG | 0.436487 | 8.1:+84740685 | MS.gene022825:CDS |
| GTGAGGAGTATTCGTGTTAG+AGG | 0.453283 | 8.1:+84739887 | MS.gene022825:CDS |
| GAAATGTAGAGCTTTGAGAT+TGG | 0.458837 | 8.1:+84739919 | MS.gene022825:CDS |
| GGCTTGCAACTGGCGGCAAA+AGG | 0.466293 | 8.1:+84738656 | MS.gene022825:CDS |
| GCCCACATTGAAGAGCAGTT+TGG | 0.466515 | 8.1:+84740625 | MS.gene022825:CDS |
| AGAGCTTTGAGATTGGATAC+TGG | 0.469624 | 8.1:+84739926 | MS.gene022825:CDS |
| TTTCAACACCATAGTGTTGA+AGG | 0.469659 | 8.1:-84740099 | None:intergenic |
| ATTGAAGAGCAGTTTGGTGG+TGG | 0.472462 | 8.1:+84740631 | MS.gene022825:CDS |
| TGTAAACCACATTTAGCAAA+CGG | 0.475109 | 8.1:-84739988 | None:intergenic |
| TGTTAAGAGCGCTATCGTGC+AGG | 0.477913 | 8.1:+84740048 | MS.gene022825:CDS |
| CAGTGGTACCTTCAACACTA+TGG | 0.479335 | 8.1:+84740091 | MS.gene022825:CDS |
| GTAAACCACATTTAGCAAAC+GGG | 0.484419 | 8.1:-84739987 | None:intergenic |
| GTCAATGTGGCAGGGCTGAT+GGG | 0.486542 | 8.1:+84740686 | MS.gene022825:CDS |
| ATAGCTTGGTGTTAGCTGGC+TGG | 0.487106 | 8.1:-84739850 | None:intergenic |
| AATCAGGCATTTCCAGAGAT+AGG | 0.491096 | 8.1:+84738623 | MS.gene022825:intron |
| CTTCAATGTGGGCATCGAGC+TGG | 0.501663 | 8.1:-84740615 | None:intergenic |
| GAAGAAACTGCAGAGGAAGA+AGG | 0.506285 | 8.1:+84740836 | MS.gene022825:CDS |
| TGAAGGTACCACTGCTTGAA+TGG | 0.509010 | 8.1:-84740082 | None:intergenic |
| GCATGCATTTCTTCTCGACC+TGG | 0.542463 | 8.1:+84740664 | MS.gene022825:CDS |
| AAGAAACTGCAGAGGAAGAA+GGG | 0.547896 | 8.1:+84740837 | MS.gene022825:CDS |
| GAAAACCCGTTTGCTAAATG+TGG | 0.549447 | 8.1:+84739982 | MS.gene022825:CDS |
| TCAGCCCTGCCACATTGACC+AGG | 0.549946 | 8.1:-84740682 | None:intergenic |
| TGGATACTGGAAACATCTCA+TGG | 0.567538 | 8.1:+84739939 | MS.gene022825:CDS |
| TTGAAGAGCAGTTTGGTGGT+GGG | 0.568882 | 8.1:+84740632 | MS.gene022825:CDS |
| CACATTGAAGAGCAGTTTGG+TGG | 0.571188 | 8.1:+84740628 | MS.gene022825:CDS |
| ACCAAACTGCTCTTCAATGT+GGG | 0.572191 | 8.1:-84740626 | None:intergenic |
| TCGACCTGGTCAATGTGGCA+GGG | 0.582666 | 8.1:+84740678 | MS.gene022825:CDS |
| TCTCCAATTTCCTCAGCACA+TGG | 0.587716 | 8.1:-84740576 | None:intergenic |
| CACCAAACTGCTCTTCAATG+TGG | 0.590048 | 8.1:-84740627 | None:intergenic |
| GGATACTGGAAACATCTCAT+GGG | 0.590726 | 8.1:+84739940 | MS.gene022825:CDS |
| GGGGAAGTGAAGCTGTCACT+CGG | 0.595119 | 8.1:+84739960 | MS.gene022825:CDS |
| GTTTCATTTAGGTATGAGCT+CGG | 0.597421 | 8.1:+84739824 | MS.gene022825:intron |
| TCAACTTAAACATAATCAAG+CGG | 0.610161 | 8.1:-84740868 | None:intergenic |
| TCTTCTCGACCTGGTCAATG+TGG | 0.620321 | 8.1:+84740673 | MS.gene022825:CDS |
| ATGCTGCTCCATTCAAGCAG+TGG | 0.639929 | 8.1:+84740074 | MS.gene022825:CDS |
| AGGAGTATTCGTGTTAGAGG+TGG | 0.646659 | 8.1:+84739890 | MS.gene022825:CDS |
| CAGGCATTTCCAGAGATAGG+AGG | 0.647215 | 8.1:+84738626 | MS.gene022825:intron |
| TCTACATGAAGAAACTGCAG+AGG | 0.659966 | 8.1:+84740829 | MS.gene022825:CDS |
| GATACTGGAAACATCTCATG+GGG | 0.671396 | 8.1:+84739941 | MS.gene022825:CDS |
| AAAAGAGTAACCATGTGCTG+AGG | 0.687141 | 8.1:+84740566 | MS.gene022825:CDS |
| TATCAAGCAACAAAACAGTG+AGG | 0.754889 | 8.1:+84739870 | MS.gene022825:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAATGATTATAAATT+GGG | + | chr8.1:84739357-84739376 | MS.gene022825:intron | 10.0% |
| !! | AAAATAAAGAAAAAATACAA+GGG | - | chr8.1:84739225-84739244 | None:intergenic | 10.0% |
| !! | AATAAAATCAACAAAACTTA+AGG | - | chr8.1:84740307-84740326 | None:intergenic | 15.0% |
| !! | CAAAATAAAGAAAAAATACA+AGG | - | chr8.1:84739226-84739245 | None:intergenic | 15.0% |
| !! | GAAAAACAATGATTATAAAT+TGG | + | chr8.1:84739356-84739375 | MS.gene022825:intron | 15.0% |
| !! | TAATCCAGAAAAAATAAATT+AGG | - | chr8.1:84740775-84740794 | None:intergenic | 15.0% |
| !!! | AAGTAATGGAATTATATATT+CGG | - | chr8.1:84740365-84740384 | None:intergenic | 15.0% |
| !!! | AGTTTTGTTGATTTTATTTT+TGG | + | chr8.1:84740309-84740328 | MS.gene022825:intron | 15.0% |
| !!! | TATTATTGTTATTATGAATC+AGG | + | chr8.1:84738607-84738626 | MS.gene022825:intron | 15.0% |
| !!! | TGATTTGATGATAATATATA+TGG | + | chr8.1:84740396-84740415 | MS.gene022825:intron | 15.0% |
| !! | ACAAAATCGTAAAAAACAAA+AGG | - | chr8.1:84738836-84738855 | None:intergenic | 20.0% |
| !! | ATAACAAAAGAAAAATAAGC+AGG | - | chr8.1:84740187-84740206 | None:intergenic | 20.0% |
| !! | ATATATAGAGAAGAGAAAAA+AGG | - | chr8.1:84738720-84738739 | None:intergenic | 20.0% |
| !! | GCTTATTATTAAAAATCGTT+TGG | + | chr8.1:84738992-84739011 | MS.gene022825:intron | 20.0% |
| !!! | GAATTGGAAATGTTATTTTA+TGG | + | chr8.1:84739288-84739307 | MS.gene022825:intron | 20.0% |
| !!! | GGTTAATTTTAGTCAATTTT+TGG | + | chr8.1:84739309-84739328 | MS.gene022825:intron | 20.0% |
| !!! | GTTTATTTTGATGTAAGAAT+TGG | + | chr8.1:84739272-84739291 | MS.gene022825:intron | 20.0% |
| !!! | TATCATTTTTTTTCTCACAA+AGG | + | chr8.1:84739557-84739576 | MS.gene022825:intron | 20.0% |
| !!! | TTCTCCTAATTTATTTTTTC+TGG | + | chr8.1:84740768-84740787 | MS.gene022825:intron | 20.0% |
| !!! | TTTCGTTTTGTTACTAATAT+TGG | + | chr8.1:84738778-84738797 | MS.gene022825:intron | 20.0% |
| ! | AACATTCATGTACAAAGATT+AGG | - | chr8.1:84739712-84739731 | None:intergenic | 25.0% |
| ! | AAGAATTAAAATTAGGACCA+CGG | - | chr8.1:84739740-84739759 | None:intergenic | 25.0% |
| ! | AATAACTGTAAAACCAACAA+TGG | - | chr8.1:84739583-84739602 | None:intergenic | 25.0% |
| ! | CAAAACAAGGACTATAAATT+TGG | + | chr8.1:84739173-84739192 | MS.gene022825:intron | 25.0% |
| ! | CTTCTGATAATTAATTCTTC+AGG | + | chr8.1:84739623-84739642 | MS.gene022825:intron | 25.0% |
| ! | GTTTATTATGATGTGGAAAT+TGG | + | chr8.1:84739087-84739106 | MS.gene022825:intron | 25.0% |
| ! | TTAGTAACAAAACGAAAATG+TGG | - | chr8.1:84738775-84738794 | None:intergenic | 25.0% |
| !! | GAATGAACTACATAGATTTT+GGG | + | chr8.1:84739461-84739480 | MS.gene022825:intron | 25.0% |
| !! | TCTTAATGGATATGGAATTA+GGG | + | chr8.1:84738879-84738898 | MS.gene022825:intron | 25.0% |
| !! | TTCTTAATGGATATGGAATT+AGG | + | chr8.1:84738878-84738897 | MS.gene022825:intron | 25.0% |
| !!! | ATATTTTGACGGTTTCATTT+AGG | + | chr8.1:84739813-84739832 | MS.gene022825:intron | 25.0% |
| !!! | TTTAGTCAATTTTTGGATTC+TGG | + | chr8.1:84739316-84739335 | MS.gene022825:intron | 25.0% |
| !!! | TTTGAACCAAGATATTTTGA+CGG | + | chr8.1:84739802-84739821 | MS.gene022825:intron | 25.0% |
| AAAGAAAAAATACAAGGGAG+CGG | - | chr8.1:84739220-84739239 | None:intergenic | 30.0% | |
| AAAGAAAATTGCTGCCAAAA+AGG | + | chr8.1:84740132-84740151 | MS.gene022825:CDS | 30.0% | |
| ATAATCCAAAAACCGAGAAT+TGG | - | chr8.1:84739140-84739159 | None:intergenic | 30.0% | |
| ATGAAACCGTCAAAATATCT+TGG | - | chr8.1:84739811-84739830 | None:intergenic | 30.0% | |
| CGTTATGGTTTATTATGATG+TGG | + | chr8.1:84739080-84739099 | MS.gene022825:intron | 30.0% | |
| CTTATGCAAAACAGAAAAAC+TGG | + | chr8.1:84739439-84739458 | MS.gene022825:intron | 30.0% | |
| GGATAGTAGATACATCAATT+AGG | + | chr8.1:84739525-84739544 | MS.gene022825:intron | 30.0% | |
| TCAAACAGTAGTTCATATTC+TGG | + | chr8.1:84739493-84739512 | MS.gene022825:intron | 30.0% | |
| TCAAGTACAATAGCAAGTAA+TGG | - | chr8.1:84740379-84740398 | None:intergenic | 30.0% | |
| TGTAAACCACATTTAGCAAA+CGG | - | chr8.1:84739991-84740010 | None:intergenic | 30.0% | |
| TTCATATTCTGGACAGTAAA+AGG | + | chr8.1:84739504-84739523 | MS.gene022825:intron | 30.0% | |
| ! | CTGATGGCTTTTAGATTTTA+TGG | + | chr8.1:84739250-84739269 | MS.gene022825:intron | 30.0% |
| ! | GGAATGAACTACATAGATTT+TGG | + | chr8.1:84739460-84739479 | MS.gene022825:intron | 30.0% |
| ! | GTTTTTCTGTTTTGCATAAG+AGG | - | chr8.1:84739439-84739458 | None:intergenic | 30.0% |
| ! | TCTGTCTGTGTTTAGATTTT+TGG | + | chr8.1:84738809-84738828 | MS.gene022825:intron | 30.0% |
| ! | TTACTTTGTTGTGGAATTTG+CGG | + | chr8.1:84738855-84738874 | MS.gene022825:intron | 30.0% |
| ! | TTGATTTATGTGTAACTTGC+AGG | + | chr8.1:84740516-84740535 | MS.gene022825:intron | 30.0% |
| !! | TTTTATAGAGTGCCAATTCT+CGG | + | chr8.1:84739125-84739144 | MS.gene022825:intron | 30.0% |
| !!! | ACGATTTTGTTACTTTGTTG+TGG | + | chr8.1:84738846-84738865 | MS.gene022825:intron | 30.0% |
| !!! | TTCTTTATTTTGTGTGCTGA+TGG | + | chr8.1:84739234-84739253 | MS.gene022825:intron | 30.0% |
| ACAGCTAAACAACTTCATGA+AGG | - | chr8.1:84739035-84739054 | None:intergenic | 35.0% | |
| ATTCACCGCTCTTTATCTAA+TGG | - | chr8.1:84740446-84740465 | None:intergenic | 35.0% | |
| CTTTCCCATTAGATAAAGAG+CGG | + | chr8.1:84740438-84740457 | MS.gene022825:intron | 35.0% | |
| GCTCTTTGAATGACAAAACA+AGG | + | chr8.1:84739160-84739179 | MS.gene022825:intron | 35.0% | |
| GTAAACCACATTTAGCAAAC+GGG | - | chr8.1:84739990-84740009 | None:intergenic | 35.0% | |
| GTTTCATTTAGGTATGAGCT+CGG | + | chr8.1:84739824-84739843 | MS.gene022825:intron | 35.0% | |
| TAAACTGCTGCAATATGTTC+AGG | + | chr8.1:84740208-84740227 | MS.gene022825:intron | 35.0% | |
| TATCAAGCAACAAAACAGTG+AGG | + | chr8.1:84739870-84739889 | MS.gene022825:CDS | 35.0% | |
| TGTGACATTTGTGTGTGTAT+GGG | + | chr8.1:84739052-84739071 | MS.gene022825:intron | 35.0% | |
| TTCACCGCTCTTTATCTAAT+GGG | - | chr8.1:84740445-84740464 | None:intergenic | 35.0% | |
| TTCATGAAGGATTCCATTCA+GGG | - | chr8.1:84739022-84739041 | None:intergenic | 35.0% | |
| ! | ATTTATGTGTAACTTGCAGG+AGG | + | chr8.1:84740519-84740538 | MS.gene022825:intron | 35.0% |
| ! | CAACACTATGGTGTTGAAAT+TGG | + | chr8.1:84740103-84740122 | MS.gene022825:CDS | 35.0% |
| ! | TTTCAACACCATAGTGTTGA+AGG | - | chr8.1:84740102-84740121 | None:intergenic | 35.0% |
| ! | TTTGCGGTTCTTAATGGATA+TGG | + | chr8.1:84738871-84738890 | MS.gene022825:intron | 35.0% |
| !! | GAAATGTAGAGCTTTGAGAT+TGG | + | chr8.1:84739919-84739938 | MS.gene022825:CDS | 35.0% |
| !! | TACATGAATGTTTTGAACCG+TGG | + | chr8.1:84739720-84739739 | MS.gene022825:intron | 35.0% |
| !! | TGTTTTGTTGCTTGATAGCT+TGG | - | chr8.1:84739867-84739886 | None:intergenic | 35.0% |
| AAAAGAGTAACCATGTGCTG+AGG | + | chr8.1:84740566-84740585 | MS.gene022825:CDS | 40.0% | |
| AAGAAACTGCAGAGGAAGAA+GGG | + | chr8.1:84740837-84740856 | MS.gene022825:CDS | 40.0% | |
| AATCAGGCATTTCCAGAGAT+AGG | + | chr8.1:84738623-84738642 | MS.gene022825:intron | 40.0% | |
| ACCAAACTGCTCTTCAATGT+GGG | - | chr8.1:84740629-84740648 | None:intergenic | 40.0% | |
| CTACTATACAAGGAGAATGC+AGG | - | chr8.1:84740483-84740502 | None:intergenic | 40.0% | |
| CTGTGACATTTGTGTGTGTA+TGG | + | chr8.1:84739051-84739070 | MS.gene022825:intron | 40.0% | |
| CTTCATGAAGGATTCCATTC+AGG | - | chr8.1:84739023-84739042 | None:intergenic | 40.0% | |
| GATACTGGAAACATCTCATG+GGG | + | chr8.1:84739941-84739960 | MS.gene022825:CDS | 40.0% | |
| GCAACATCAGCTACTATACA+AGG | - | chr8.1:84740493-84740512 | None:intergenic | 40.0% | |
| GGATACTGGAAACATCTCAT+GGG | + | chr8.1:84739940-84739959 | MS.gene022825:CDS | 40.0% | |
| GTACTTGCCAATGACAATCT+AGG | - | chr8.1:84740337-84740356 | None:intergenic | 40.0% | |
| GTGGAATTTGCGGTTCTTAA+TGG | + | chr8.1:84738865-84738884 | MS.gene022825:intron | 40.0% | |
| TAACCATGTGCTGAGGAAAT+TGG | + | chr8.1:84740573-84740592 | MS.gene022825:CDS | 40.0% | |
| TCTACATGAAGAAACTGCAG+AGG | + | chr8.1:84740829-84740848 | MS.gene022825:CDS | 40.0% | |
| TGGATACTGGAAACATCTCA+TGG | + | chr8.1:84739939-84739958 | MS.gene022825:CDS | 40.0% | |
| TTTCTCACAAAGGCCATTGT+TGG | + | chr8.1:84739567-84739586 | MS.gene022825:intron | 40.0% | |
| ! | CAGCACATGGTTACTCTTTT+TGG | - | chr8.1:84740566-84740585 | None:intergenic | 40.0% |
| ! | GAAAACCCGTTTGCTAAATG+TGG | + | chr8.1:84739982-84740001 | MS.gene022825:CDS | 40.0% |
| ! | TGGATTATGCAGCTACGTTT+TGG | + | chr8.1:84740788-84740807 | MS.gene022825:intron | 40.0% |
| !! | AGAGCTTTGAGATTGGATAC+TGG | + | chr8.1:84739926-84739945 | MS.gene022825:CDS | 40.0% |
| !! | TTATGCAGCTACGTTTTGGA+AGG | + | chr8.1:84740792-84740811 | MS.gene022825:intron | 40.0% |
| !! | TTTGGTGCCTAGATTGTCAT+TGG | + | chr8.1:84740327-84740346 | MS.gene022825:intron | 40.0% |
| !!! | TCTGCTAAAGCACTGGTTTT+AGG | + | chr8.1:84738925-84738944 | MS.gene022825:intron | 40.0% |
| AACTACTGTCTACCTCTACG+CGG | - | chr8.1:84738906-84738925 | None:intergenic | 45.0% | |
| ACAAAAAGGCTTGCAACTGG+CGG | + | chr8.1:84738649-84738668 | MS.gene022825:CDS | 45.0% | |
| AGGACAAAAAGGCTTGCAAC+TGG | + | chr8.1:84738646-84738665 | MS.gene022825:CDS | 45.0% | |
| AGTTCGCACAAGCTCATTGT+TGG | - | chr8.1:84740020-84740039 | None:intergenic | 45.0% | |
| CACATTGAAGAGCAGTTTGG+TGG | + | chr8.1:84740628-84740647 | MS.gene022825:CDS | 45.0% | |
| CACCAAACTGCTCTTCAATG+TGG | - | chr8.1:84740630-84740649 | None:intergenic | 45.0% | |
| CAGTGGTACCTTCAACACTA+TGG | + | chr8.1:84740091-84740110 | MS.gene022825:CDS | 45.0% | |
| CCAGAGATAGGAGGACAAAA+AGG | + | chr8.1:84738635-84738654 | MS.gene022825:CDS | 45.0% | |
| GAAGAAACTGCAGAGGAAGA+AGG | + | chr8.1:84740836-84740855 | MS.gene022825:CDS | 45.0% | |
| GGAGAATGCAGGACGTAATT+TGG | - | chr8.1:84740472-84740491 | None:intergenic | 45.0% | |
| TCTCCAATTTCCTCAGCACA+TGG | - | chr8.1:84740579-84740598 | None:intergenic | 45.0% | |
| ! | ATTGAAGAGCAGTTTGGTGG+TGG | + | chr8.1:84740631-84740650 | MS.gene022825:CDS | 45.0% |
| ! | CAGTAGTTCTGCTAAAGCAC+TGG | + | chr8.1:84738918-84738937 | MS.gene022825:intron | 45.0% |
| ! | CCTTTTTGTCCTCCTATCTC+TGG | - | chr8.1:84738638-84738657 | None:intergenic | 45.0% |
| ! | GAGTGCCAATTCTCGGTTTT+TGG | + | chr8.1:84739132-84739151 | MS.gene022825:intron | 45.0% |
| ! | TTGAAGAGCAGTTTGGTGGT+GGG | + | chr8.1:84740632-84740651 | MS.gene022825:CDS | 45.0% |
| !! | AGGAGTATTCGTGTTAGAGG+TGG | + | chr8.1:84739890-84739909 | MS.gene022825:CDS | 45.0% |
| !! | CTTGATAGCTTGGTGTTAGC+TGG | - | chr8.1:84739857-84739876 | None:intergenic | 45.0% |
| !! | GTGAGGAGTATTCGTGTTAG+AGG | + | chr8.1:84739887-84739906 | MS.gene022825:CDS | 45.0% |
| !! | TGAAGGTACCACTGCTTGAA+TGG | - | chr8.1:84740085-84740104 | None:intergenic | 45.0% |
| !!! | CAGCTACGTTTTGGAAGGTA+AGG | + | chr8.1:84740797-84740816 | MS.gene022825:intron | 45.0% |
| !!! | CGTTTTGGAAGGTAAGGAGT+TGG | + | chr8.1:84740803-84740822 | MS.gene022825:CDS | 45.0% |
| !! | AAATTATAAGAATTAAAATT+AGG | - | chr8.1:84739747-84739766 | None:intergenic | 5.0% |
| !!! | TTTTAATTCTTATAATTTAT+TGG | + | chr8.1:84739749-84739768 | MS.gene022825:intron | 5.0% |
| ATCGTTTGGTCGTCCCTGAA+TGG | + | chr8.1:84739006-84739025 | MS.gene022825:intron | 50.0% | |
| ATGCTGCTCCATTCAAGCAG+TGG | + | chr8.1:84740074-84740093 | MS.gene022825:CDS | 50.0% | |
| CAGGCATTTCCAGAGATAGG+AGG | + | chr8.1:84738626-84738645 | MS.gene022825:intron | 50.0% | |
| GCATGCATTTCTTCTCGACC+TGG | + | chr8.1:84740664-84740683 | MS.gene022825:CDS | 50.0% | |
| GCCCACATTGAAGAGCAGTT+TGG | + | chr8.1:84740625-84740644 | MS.gene022825:CDS | 50.0% | |
| TCTTCTCGACCTGGTCAATG+TGG | + | chr8.1:84740673-84740692 | MS.gene022825:CDS | 50.0% | |
| TGCCAAAAAGGACTCTGCAC+AGG | + | chr8.1:84740144-84740163 | MS.gene022825:CDS | 50.0% | |
| TGTGTATGGGTCGCTCGTTA+TGG | + | chr8.1:84739065-84739084 | MS.gene022825:intron | 50.0% | |
| ! | CACCTGTGCAGAGTCCTTTT+TGG | - | chr8.1:84740149-84740168 | None:intergenic | 50.0% |
| !! | ATAGCTTGGTGTTAGCTGGC+TGG | - | chr8.1:84739853-84739872 | None:intergenic | 50.0% |
| !! | TGTTAAGAGCGCTATCGTGC+AGG | + | chr8.1:84740048-84740067 | MS.gene022825:CDS | 50.0% |
| GGGGAAGTGAAGCTGTCACT+CGG | + | chr8.1:84739960-84739979 | MS.gene022825:CDS | 55.0% | |
| GTCAATGTGGCAGGGCTGAT+GGG | + | chr8.1:84740686-84740705 | MS.gene022825:CDS | 55.0% | |
| TCGACCTGGTCAATGTGGCA+GGG | + | chr8.1:84740678-84740697 | MS.gene022825:CDS | 55.0% | |
| TGGAATTAGGGTCCGCGTAG+AGG | + | chr8.1:84738891-84738910 | MS.gene022825:intron | 55.0% | |
| !! | CTTCAATGTGGGCATCGAGC+TGG | - | chr8.1:84740618-84740637 | None:intergenic | 55.0% |
| CTCGACCTGGTCAATGTGGC+AGG | + | chr8.1:84740677-84740696 | MS.gene022825:CDS | 60.0% | |
| GGCTTGCAACTGGCGGCAAA+AGG | + | chr8.1:84738656-84738675 | MS.gene022825:CDS | 60.0% | |
| GGTCAATGTGGCAGGGCTGA+TGG | + | chr8.1:84740685-84740704 | MS.gene022825:CDS | 60.0% | |
| TCAGCCCTGCCACATTGACC+AGG | - | chr8.1:84740685-84740704 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 84738526 | 84740875 | 84738526 | ID=MS.gene022825 |
| chr8.1 | mRNA | 84738526 | 84740875 | 84738526 | ID=MS.gene022825.t1;Parent=MS.gene022825 |
| chr8.1 | exon | 84738526 | 84738529 | 84738526 | ID=MS.gene022825.t1.exon1;Parent=MS.gene022825.t1 |
| chr8.1 | CDS | 84738526 | 84738529 | 84738526 | ID=cds.MS.gene022825.t1;Parent=MS.gene022825.t1 |
| chr8.1 | exon | 84738629 | 84738701 | 84738629 | ID=MS.gene022825.t1.exon2;Parent=MS.gene022825.t1 |
| chr8.1 | CDS | 84738629 | 84738701 | 84738629 | ID=cds.MS.gene022825.t1;Parent=MS.gene022825.t1 |
| chr8.1 | exon | 84739835 | 84740165 | 84739835 | ID=MS.gene022825.t1.exon3;Parent=MS.gene022825.t1 |
| chr8.1 | CDS | 84739835 | 84740165 | 84739835 | ID=cds.MS.gene022825.t1;Parent=MS.gene022825.t1 |
| chr8.1 | exon | 84740538 | 84740707 | 84740538 | ID=MS.gene022825.t1.exon4;Parent=MS.gene022825.t1 |
| chr8.1 | CDS | 84740538 | 84740707 | 84740538 | ID=cds.MS.gene022825.t1;Parent=MS.gene022825.t1 |
| chr8.1 | exon | 84740800 | 84740875 | 84740800 | ID=MS.gene022825.t1.exon5;Parent=MS.gene022825.t1 |
| chr8.1 | CDS | 84740800 | 84740875 | 84740800 | ID=cds.MS.gene022825.t1;Parent=MS.gene022825.t1 |
| Gene Sequence |
| Protein sequence |
