Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013335.t1 | XP_003602573.1 | 98.7 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 4.10E-171 | 610.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013335.t1 | O65751 | 89.3 | 300 | 31 | 1 | 1 | 299 | 1 | 300 | 5.4e-156 | 551.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013335.t1 | G7JB01 | 98.7 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 2.9e-171 | 610.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013335.t1 | MTR_3g095810 | 98.662 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 0.0 | 613 |
| MS.gene013335.t1 | MTR_3g095810 | 97.993 | 299 | 4 | 1 | 1 | 299 | 1 | 297 | 0.0 | 603 |
| MS.gene013335.t1 | MTR_7g107400 | 93.174 | 293 | 18 | 2 | 9 | 299 | 5 | 297 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013335.t1 | AT3G04770 | 75.986 | 279 | 49 | 6 | 7 | 275 | 9 | 279 | 7.37e-149 | 419 |
| MS.gene013335.t1 | AT1G72370 | 82.591 | 247 | 40 | 3 | 1 | 244 | 1 | 247 | 4.92e-145 | 409 |
| MS.gene013335.t1 | AT1G72370 | 82.591 | 247 | 40 | 3 | 1 | 244 | 1 | 247 | 5.86e-145 | 409 |
| MS.gene013335.t1 | AT3G04770 | 88.832 | 197 | 22 | 0 | 7 | 203 | 9 | 205 | 5.15e-131 | 375 |
Find 94 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTTCTTTACCAGCTTC+TGG | 0.204965 | 3.4:-86909577 | None:intergenic |
| CTCTTGCTCCTTGGCCTCTT+CGG | 0.208222 | 3.4:-86909404 | None:intergenic |
| TTCTTTCAGTTGCAGGGGAC+TGG | 0.226869 | 3.4:+86909872 | MS.gene013335:intron |
| ATAGCATCGGTTGTCTCTTT+TGG | 0.249875 | 3.4:+86909158 | MS.gene013335:CDS |
| CAGCAGCTCCTGGTGTCAAC+TGG | 0.259408 | 3.4:+86909548 | MS.gene013335:CDS |
| TTCACCTGATGGTCAGTTCT+AGG | 0.303947 | 3.4:-86908878 | None:intergenic |
| GTTCAATCTGCAAGGCCTTA+TGG | 0.305597 | 3.4:+86908725 | MS.gene013335:CDS |
| TCTTGCTCCTTGGCCTCTTC+GGG | 0.307675 | 3.4:-86909403 | None:intergenic |
| GGTATTTATATCATTAATCT+TGG | 0.324341 | 3.4:+86908632 | MS.gene013335:intron |
| TCTTTCAGTTGCAGGGGACT+GGG | 0.335061 | 3.4:+86909873 | MS.gene013335:intron |
| GAAGGAAACTTGCATTTGAT+TGG | 0.347451 | 3.4:-86908825 | None:intergenic |
| TTCATCCTCCTCTTGCTCCT+TGG | 0.369266 | 3.4:-86909413 | None:intergenic |
| ATTTGATTGGTAAAGGTTCC+AGG | 0.371234 | 3.4:-86908812 | None:intergenic |
| GCTGTCACAGATTCAATTCC+AGG | 0.382679 | 3.4:-86909931 | None:intergenic |
| CATCAGCAGCCAACATCATC+TGG | 0.391970 | 3.4:-86907844 | None:intergenic |
| ATTGAATCTGTGACAGCAAC+TGG | 0.400686 | 3.4:+86909937 | MS.gene013335:CDS |
| TCCAAGAGCAGCTTCCTTGA+TGG | 0.403359 | 3.4:-86909050 | None:intergenic |
| CCCATCAAGGAAGCTGCTCT+TGG | 0.405552 | 3.4:+86909049 | MS.gene013335:CDS |
| AATGTTCTTTACCAGCTTCT+GGG | 0.407962 | 3.4:-86909576 | None:intergenic |
| ACACCAGGAGCTGCTGGAAT+AGG | 0.410453 | 3.4:-86909541 | None:intergenic |
| TGCTTTCCCTTGTTGTTAGC+GGG | 0.413093 | 3.4:-86909136 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+GGG | 0.417623 | 3.4:-86909049 | None:intergenic |
| TGAAGCAATAACGTTCCATT+TGG | 0.418662 | 3.4:-86907895 | None:intergenic |
| ACTGGAGCTAATGCTATTGC+AGG | 0.451070 | 3.4:+86908779 | MS.gene013335:CDS |
| CAGTTGACACCAGGAGCTGC+TGG | 0.455088 | 3.4:-86909547 | None:intergenic |
| GCCATTGCTGACTTCAATGC+TGG | 0.456055 | 3.4:+86909454 | MS.gene013335:CDS |
| TGTGGTGCTGCATCAGTCCA+TGG | 0.469309 | 3.4:-86909517 | None:intergenic |
| AATCTGTGACAGCAACTGGC+TGG | 0.470930 | 3.4:+86909941 | MS.gene013335:CDS |
| GTGGGAATTTGTTGCGGTGG+TGG | 0.473747 | 3.4:-86909907 | None:intergenic |
| AACTTGCATTTGATTGGTAA+AGG | 0.474388 | 3.4:-86908819 | None:intergenic |
| CAGATTGAACAATAATGTCC+TGG | 0.474422 | 3.4:-86908712 | None:intergenic |
| CTTAAGTTTGCTCAGTACAC+TGG | 0.477075 | 3.4:+86908761 | MS.gene013335:CDS |
| AACTGGGCTGCCCCAGAAGC+TGG | 0.477922 | 3.4:+86909565 | MS.gene013335:CDS |
| AGCAGCTCCTGGTGTCAACT+GGG | 0.479182 | 3.4:+86909549 | MS.gene013335:CDS |
| TAAGAACTGCGACTTCCAAA+TGG | 0.482705 | 3.4:+86907880 | MS.gene013335:CDS |
| CAGCCTATTCCAGCAGCTCC+TGG | 0.483642 | 3.4:+86909538 | MS.gene013335:CDS |
| CCGCAACAAATTCCCACTCC+TGG | 0.483783 | 3.4:+86909913 | MS.gene013335:CDS |
| CCAATGTCAACATATCTCAT+AGG | 0.485555 | 3.4:-86909109 | None:intergenic |
| AGTGTATTCTTTCAGTTGCA+GGG | 0.499899 | 3.4:+86909866 | MS.gene013335:intron |
| AGAAACTTCAACTAGCTGCC+AGG | 0.503788 | 3.4:+86908666 | MS.gene013335:CDS |
| ATGCTTTCCCTTGTTGTTAG+CGG | 0.513106 | 3.4:-86909137 | None:intergenic |
| CTTTCAGTTGCAGGGGACTG+GGG | 0.513229 | 3.4:+86909874 | MS.gene013335:intron |
| CCTATGAGATATGTTGACAT+TGG | 0.514354 | 3.4:+86909109 | MS.gene013335:CDS |
| TGATCCTAGAACTGACCATC+AGG | 0.519085 | 3.4:+86908874 | MS.gene013335:CDS |
| AATGCTGGTGGTCCATCTGA+TGG | 0.520603 | 3.4:+86909469 | MS.gene013335:CDS |
| AGAACGGCTCTCTGTCCATA+AGG | 0.525873 | 3.4:-86908740 | None:intergenic |
| CGAAGAGGCCAAGGAGCAAG+AGG | 0.529876 | 3.4:+86909405 | MS.gene013335:CDS |
| TGCTTCAAACGCCGCAACGA+TGG | 0.530057 | 3.4:+86907911 | MS.gene013335:CDS |
| ATCTGTGACAGCAACTGGCT+GGG | 0.531636 | 3.4:+86909942 | MS.gene013335:CDS |
| GTGTCACAGAAAGCAATAGT+TGG | 0.533846 | 3.4:-86909079 | None:intergenic |
| ATCACATCCCACTTAAGACC+TGG | 0.536430 | 3.4:-86909223 | None:intergenic |
| GGGGCAGCCCAGTTGACACC+AGG | 0.539769 | 3.4:-86909556 | None:intergenic |
| TAGAGAACCCGAAGAGGCCA+AGG | 0.540338 | 3.4:+86909396 | MS.gene013335:CDS |
| CTATTCGCCCAGGTCTTAAG+TGG | 0.540613 | 3.4:+86909215 | MS.gene013335:CDS |
| AGATTGAACAATAATGTCCT+GGG | 0.542615 | 3.4:-86908711 | None:intergenic |
| CCAGGAGTGGGAATTTGTTG+CGG | 0.543589 | 3.4:-86909913 | None:intergenic |
| CTGACGGGATGAAAGTTGTT+CGG | 0.545281 | 3.4:-86907798 | None:intergenic |
| CGCAGTTCTTAGTGCCGAGG+TGG | 0.555885 | 3.4:-86907868 | None:intergenic |
| AGGTCTTAAGTGGGATGTGA+TGG | 0.569141 | 3.4:+86909225 | MS.gene013335:CDS |
| TGGAATTCCCGCTAACAACA+AGG | 0.570440 | 3.4:+86909129 | MS.gene013335:CDS |
| GTGTATTCTTTCAGTTGCAG+GGG | 0.570945 | 3.4:+86909867 | MS.gene013335:intron |
| TGTTTGTTTGCAGCCCATCA+AGG | 0.579519 | 3.4:+86909036 | MS.gene013335:intron |
| CACAGATTCAATTCCAGGAG+TGG | 0.579651 | 3.4:-86909926 | None:intergenic |
| GCAATGGCATAATCTAGAGC+AGG | 0.581740 | 3.4:-86909439 | None:intergenic |
| GTGGTCCATCTGATGGTCAG+TGG | 0.581948 | 3.4:+86909476 | MS.gene013335:CDS |
| ATGCGTGGTACTATTCGCCC+AGG | 0.584833 | 3.4:+86909205 | MS.gene013335:CDS |
| CTCGATTGCAACGATGACCC+TGG | 0.587596 | 3.4:-86908684 | None:intergenic |
| ATGTTCTTTACCAGCTTCTG+GGG | 0.588593 | 3.4:-86909575 | None:intergenic |
| GAGAAGACGAGGCTCACTGA+AGG | 0.589438 | 3.4:-86908843 | None:intergenic |
| ACAGATTCAATTCCAGGAGT+GGG | 0.591012 | 3.4:-86909925 | None:intergenic |
| AACAAGGGAAAGCATAGCAT+CGG | 0.599533 | 3.4:+86909145 | MS.gene013335:CDS |
| AGAGGCCAAGGAGCAAGAGG+AGG | 0.600295 | 3.4:+86909408 | MS.gene013335:CDS |
| GAAACTTCAACTAGCTGCCA+GGG | 0.600433 | 3.4:+86908667 | MS.gene013335:CDS |
| GGAGCTGCTGGAATAGGCTG+TGG | 0.601218 | 3.4:-86909535 | None:intergenic |
| ACATTATTGTTCAATCTGCA+AGG | 0.601975 | 3.4:+86908717 | MS.gene013335:CDS |
| ATTGCTGACTTCAATGCTGG+TGG | 0.602149 | 3.4:+86909457 | MS.gene013335:CDS |
| CTACTGCAATTGAGCAGCCA+TGG | 0.603201 | 3.4:+86909500 | MS.gene013335:CDS |
| GGAGTGGGAATTTGTTGCGG+TGG | 0.607574 | 3.4:-86909910 | None:intergenic |
| TCACATCCCACTTAAGACCT+GGG | 0.607979 | 3.4:-86909222 | None:intergenic |
| CATGGCTGCTCAATTGCAGT+AGG | 0.613104 | 3.4:-86909499 | None:intergenic |
| ATTGCAGGTAGACACACTCC+TGG | 0.622813 | 3.4:+86908794 | MS.gene013335:CDS |
| GTAGGCCACTGACCATCAGA+TGG | 0.625414 | 3.4:-86909481 | None:intergenic |
| ACCAGCATTGAAGTCAGCAA+TGG | 0.630888 | 3.4:-86909455 | None:intergenic |
| TTTGAAAGTTACCATCGTTG+CGG | 0.632625 | 3.4:-86907922 | None:intergenic |
| AGTCGCAGTTCTTAGTGCCG+AGG | 0.635317 | 3.4:-86907871 | None:intergenic |
| GGAATTCCCGCTAACAACAA+GGG | 0.640044 | 3.4:+86909130 | MS.gene013335:CDS |
| AGCTGACATCCAGATGATGT+TGG | 0.641030 | 3.4:+86907835 | MS.gene013335:CDS |
| GTACTGAGCAAACTTAAGAA+CGG | 0.651453 | 3.4:-86908756 | None:intergenic |
| GATTGAACAATAATGTCCTG+GGG | 0.658645 | 3.4:-86908710 | None:intergenic |
| TATTCGCCCAGGTCTTAAGT+GGG | 0.666814 | 3.4:+86909216 | MS.gene013335:CDS |
| TCAGTGAGGATGAGAAGACG+AGG | 0.674872 | 3.4:-86908854 | None:intergenic |
| TTGGCTGCTGATGTCCACCT+CGG | 0.712261 | 3.4:+86907854 | MS.gene013335:CDS |
| ATTGAACAATAATGTCCTGG+GGG | 0.723405 | 3.4:-86908709 | None:intergenic |
| GGTCAGTTCTAGGATCAGTG+AGG | 0.760014 | 3.4:-86908868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAATGAATACA+TGG | - | chr3.4:86909841-86909860 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | chr3.4:86908611-86908630 | MS.gene013335:intron | 10.0% |
| !!! | ATTTTAAAAGATGACAATAA+CGG | - | chr3.4:86909709-86909728 | None:intergenic | 15.0% |
| !! | AAAACAAATTGAAGATCAAA+GGG | - | chr3.4:86909682-86909701 | None:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | chr3.4:86908397-86908416 | None:intergenic | 20.0% |
| !! | ATTTCTCTTCAACTTTAATT+TGG | + | chr3.4:86909651-86909670 | MS.gene013335:intron | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | chr3.4:86908632-86908651 | MS.gene013335:intron | 20.0% |
| !! | TAAAACAAATTGAAGATCAA+AGG | - | chr3.4:86909683-86909702 | None:intergenic | 20.0% |
| !! | TTAAGAAAAACATTAGACAA+TGG | - | chr3.4:86909354-86909373 | None:intergenic | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | chr3.4:86908524-86908543 | None:intergenic | 20.0% |
| !!! | AGGATGATTAATTACAATTT+TGG | + | chr3.4:86908103-86908122 | MS.gene013335:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | chr3.4:86908942-86908961 | MS.gene013335:intron | 20.0% |
| !!! | GTTTTGTTTTGTTTGTTTTA+CGG | + | chr3.4:86908440-86908459 | MS.gene013335:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | chr3.4:86908920-86908939 | MS.gene013335:intron | 20.0% |
| !!! | TTTCTCTTCAACTTTAATTT+GGG | + | chr3.4:86909652-86909671 | MS.gene013335:intron | 20.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | chr3.4:86908271-86908290 | None:intergenic | 20.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | chr3.4:86908577-86908596 | MS.gene013335:intron | 25.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | chr3.4:86907994-86908013 | None:intergenic | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | chr3.4:86908643-86908662 | MS.gene013335:CDS | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | chr3.4:86908963-86908982 | MS.gene013335:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | chr3.4:86908642-86908661 | MS.gene013335:CDS | 25.0% |
| !! | AAAAATCTTGAGTTTAGGTT+AGG | - | chr3.4:86909627-86909646 | None:intergenic | 25.0% |
| !! | TCGTTAACAATCTAGTTTAT+AGG | + | chr3.4:86908083-86908102 | MS.gene013335:intron | 25.0% |
| !! | TCTAATGTTTTTCTTAATGC+AGG | + | chr3.4:86909357-86909376 | MS.gene013335:intron | 25.0% |
| !!! | AACCTAAACTCAAGATTTTT+TGG | + | chr3.4:86909627-86909646 | MS.gene013335:intron | 25.0% |
| AACACAAGGTGTAACTTAAT+TGG | - | chr3.4:86908495-86908514 | None:intergenic | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | chr3.4:86908822-86908841 | None:intergenic | 30.0% | |
| ACACAAGGTGTAACTTAATT+GGG | - | chr3.4:86908494-86908513 | None:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | chr3.4:86908717-86908736 | MS.gene013335:CDS | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | chr3.4:86908714-86908733 | None:intergenic | 30.0% | |
| ATTAACAAGCAAACATGTCA+AGG | - | chr3.4:86908912-86908931 | None:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | chr3.4:86908495-86908514 | MS.gene013335:intron | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | chr3.4:86908979-86908998 | None:intergenic | 30.0% | |
| TGCCAAAAAATCTTGAGTTT+AGG | - | chr3.4:86909632-86909651 | None:intergenic | 30.0% | |
| TGTTAAGAATCGAGATTAAG+TGG | + | chr3.4:86908042-86908061 | MS.gene013335:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | chr3.4:86908496-86908515 | MS.gene013335:intron | 30.0% | |
| ! | AATTCTGCAAAACGGTTTTT+AGG | + | chr3.4:86908169-86908188 | MS.gene013335:intron | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | chr3.4:86908282-86908301 | MS.gene013335:intron | 30.0% |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | chr3.4:86908993-86909012 | MS.gene013335:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | chr3.4:86908285-86908304 | None:intergenic | 30.0% |
| AAATGTTCTTTACCAGCTTC+TGG | - | chr3.4:86909580-86909599 | None:intergenic | 35.0% | |
| AATGTTCTTTACCAGCTTCT+GGG | - | chr3.4:86909579-86909598 | None:intergenic | 35.0% | |
| AGCAAACATGTCAAGGATAA+TGG | - | chr3.4:86908905-86908924 | None:intergenic | 35.0% | |
| AGTGTATTCTTTCAGTTGCA+GGG | + | chr3.4:86909866-86909885 | MS.gene013335:intron | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | chr3.4:86908712-86908731 | None:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | chr3.4:86908815-86908834 | None:intergenic | 35.0% | |
| CAAAACAAAACGCAACACTA+TGG | - | chr3.4:86908431-86908450 | None:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | chr3.4:86908715-86908734 | None:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | chr3.4:86909112-86909131 | None:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | chr3.4:86909109-86909128 | MS.gene013335:CDS | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | chr3.4:86908828-86908847 | None:intergenic | 35.0% | |
| GAGTGTAGTAATGATGTCTT+GGG | - | chr3.4:86909745-86909764 | None:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | chr3.4:86908713-86908732 | None:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | chr3.4:86908759-86908778 | None:intergenic | 35.0% | |
| TAGTGTATTCTTTCAGTTGC+AGG | + | chr3.4:86909865-86909884 | MS.gene013335:intron | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | chr3.4:86907898-86907917 | None:intergenic | 35.0% | |
| TGAGTGTAGTAATGATGTCT+TGG | - | chr3.4:86909746-86909765 | None:intergenic | 35.0% | |
| TTTGAAAGTTACCATCGTTG+CGG | - | chr3.4:86907925-86907944 | None:intergenic | 35.0% | |
| ! | CTGTTTGGAATTCTGCAAAA+CGG | + | chr3.4:86908161-86908180 | MS.gene013335:intron | 35.0% |
| ! | TGTTCACTTTCATTTTGTGC+TGG | + | chr3.4:86908136-86908155 | MS.gene013335:intron | 35.0% |
| AATCAAGGAACCCAAACACA+AGG | - | chr3.4:86908509-86908528 | None:intergenic | 40.0% | |
| ACACAGTGCTGTGTAAAGAA+GGG | - | chr3.4:86909331-86909350 | None:intergenic | 40.0% | |
| ACAGATTCAATTCCAGGAGT+GGG | - | chr3.4:86909928-86909947 | None:intergenic | 40.0% | |
| ATGTTCTTTACCAGCTTCTG+GGG | - | chr3.4:86909578-86909597 | None:intergenic | 40.0% | |
| ATTGAATCTGTGACAGCAAC+TGG | + | chr3.4:86909937-86909956 | MS.gene013335:CDS | 40.0% | |
| GTGTATTCTTTCAGTTGCAG+GGG | + | chr3.4:86909867-86909886 | MS.gene013335:intron | 40.0% | |
| GTGTCACAGAAAGCAATAGT+TGG | - | chr3.4:86909082-86909101 | None:intergenic | 40.0% | |
| TAAGAACTGCGACTTCCAAA+TGG | + | chr3.4:86907880-86907899 | MS.gene013335:CDS | 40.0% | |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | chr3.4:86909145-86909164 | MS.gene013335:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | chr3.4:86908892-86908911 | None:intergenic | 40.0% |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | chr3.4:86908761-86908780 | MS.gene013335:CDS | 40.0% |
| ! | CTTTTATAGAGAACCCGAAG+AGG | + | chr3.4:86909390-86909409 | MS.gene013335:CDS | 40.0% |
| ! | TTTTAGGCTCTGTTTGGTAG+CGG | + | chr3.4:86908185-86908204 | MS.gene013335:intron | 40.0% |
| !! | AACGGTTTTTAGGCTCTGTT+TGG | + | chr3.4:86908179-86908198 | MS.gene013335:intron | 40.0% |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | chr3.4:86909140-86909159 | None:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | chr3.4:86907817-86907836 | None:intergenic | 40.0% |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | chr3.4:86907816-86907835 | None:intergenic | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | chr3.4:86909158-86909177 | MS.gene013335:CDS | 40.0% |
| ACTGGAGCTAATGCTATTGC+AGG | + | chr3.4:86908779-86908798 | MS.gene013335:CDS | 45.0% | |
| AGAAACTTCAACTAGCTGCC+AGG | + | chr3.4:86908666-86908685 | MS.gene013335:CDS | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | chr3.4:86907835-86907854 | MS.gene013335:CDS | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | chr3.4:86909225-86909244 | MS.gene013335:CDS | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | chr3.4:86909226-86909245 | None:intergenic | 45.0% | |
| CACAGATTCAATTCCAGGAG+TGG | - | chr3.4:86909929-86909948 | None:intergenic | 45.0% | |
| CGCAACACTATGGATCTGTT+TGG | - | chr3.4:86908421-86908440 | None:intergenic | 45.0% | |
| CTGACGGGATGAAAGTTGTT+CGG | - | chr3.4:86907801-86907820 | None:intergenic | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | chr3.4:86908667-86908686 | MS.gene013335:CDS | 45.0% | |
| GACACAGTGCTGTGTAAAGA+AGG | - | chr3.4:86909332-86909351 | None:intergenic | 45.0% | |
| GCTGTCACAGATTCAATTCC+AGG | - | chr3.4:86909934-86909953 | None:intergenic | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | chr3.4:86909130-86909149 | MS.gene013335:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | chr3.4:86908725-86908744 | MS.gene013335:CDS | 45.0% | |
| TATTCGCCCAGGTCTTAAGT+GGG | + | chr3.4:86909216-86909235 | MS.gene013335:CDS | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | chr3.4:86909225-86909244 | None:intergenic | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | chr3.4:86908874-86908893 | MS.gene013335:CDS | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | chr3.4:86909129-86909148 | MS.gene013335:CDS | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | chr3.4:86909036-86909055 | MS.gene013335:intron | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | chr3.4:86908881-86908900 | None:intergenic | 45.0% | |
| ! | ACCAGCATTGAAGTCAGCAA+TGG | - | chr3.4:86909458-86909477 | None:intergenic | 45.0% |
| ! | GCAATGGCATAATCTAGAGC+AGG | - | chr3.4:86909442-86909461 | None:intergenic | 45.0% |
| !! | ATTGCTGACTTCAATGCTGG+TGG | + | chr3.4:86909457-86909476 | MS.gene013335:CDS | 45.0% |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | chr3.4:86909139-86909158 | None:intergenic | 45.0% |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | chr3.4:86908146-86908165 | MS.gene013335:intron | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | chr3.4:86909165-86909184 | MS.gene013335:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | chr3.4:86909174-86909193 | MS.gene013335:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | chr3.4:86909170-86909189 | MS.gene013335:CDS | 45.0% |
| AATCTGTGACAGCAACTGGC+TGG | + | chr3.4:86909941-86909960 | MS.gene013335:CDS | 50.0% | |
| AATGCTGGTGGTCCATCTGA+TGG | + | chr3.4:86909469-86909488 | MS.gene013335:CDS | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | chr3.4:86908743-86908762 | None:intergenic | 50.0% | |
| ATCTGTGACAGCAACTGGCT+GGG | + | chr3.4:86909942-86909961 | MS.gene013335:CDS | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | chr3.4:86908794-86908813 | MS.gene013335:CDS | 50.0% | |
| CATCAGCAGCCAACATCATC+TGG | - | chr3.4:86907847-86907866 | None:intergenic | 50.0% | |
| CATGGCTGCTCAATTGCAGT+AGG | - | chr3.4:86909502-86909521 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | chr3.4:86909052-86909071 | None:intergenic | 50.0% | |
| CTACTGCAATTGAGCAGCCA+TGG | + | chr3.4:86909500-86909519 | MS.gene013335:CDS | 50.0% | |
| CTATTCGCCCAGGTCTTAAG+TGG | + | chr3.4:86909215-86909234 | MS.gene013335:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | chr3.4:86908857-86908876 | None:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | chr3.4:86909053-86909072 | None:intergenic | 50.0% | |
| TCTTTCAGTTGCAGGGGACT+GGG | + | chr3.4:86909873-86909892 | MS.gene013335:intron | 50.0% | |
| TTCATCCTCCTCTTGCTCCT+TGG | - | chr3.4:86909416-86909435 | None:intergenic | 50.0% | |
| TTCTTTCAGTTGCAGGGGAC+TGG | + | chr3.4:86909872-86909891 | MS.gene013335:intron | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | chr3.4:86909190-86909209 | MS.gene013335:CDS | 50.0% |
| !! | CCAGGAGTGGGAATTTGTTG+CGG | - | chr3.4:86909916-86909935 | None:intergenic | 50.0% |
| !! | GCCATTGCTGACTTCAATGC+TGG | + | chr3.4:86909454-86909473 | MS.gene013335:CDS | 50.0% |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | chr3.4:86908871-86908890 | None:intergenic | 50.0% |
| ACACCAGGAGCTGCTGGAAT+AGG | - | chr3.4:86909544-86909563 | None:intergenic | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | chr3.4:86907874-86907893 | None:intergenic | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | chr3.4:86909205-86909224 | MS.gene013335:CDS | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | chr3.4:86909049-86909068 | MS.gene013335:CDS | 55.0% | |
| CCGCAACAAATTCCCACTCC+TGG | + | chr3.4:86909913-86909932 | MS.gene013335:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | chr3.4:86908687-86908706 | None:intergenic | 55.0% | |
| CTCTTGCTCCTTGGCCTCTT+CGG | - | chr3.4:86909407-86909426 | None:intergenic | 55.0% | |
| CTTTCAGTTGCAGGGGACTG+GGG | + | chr3.4:86909874-86909893 | MS.gene013335:intron | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | chr3.4:86908846-86908865 | None:intergenic | 55.0% | |
| GTAGGCCACTGACCATCAGA+TGG | - | chr3.4:86909484-86909503 | None:intergenic | 55.0% | |
| GTGGTCCATCTGATGGTCAG+TGG | + | chr3.4:86909476-86909495 | MS.gene013335:CDS | 55.0% | |
| TAGAGAACCCGAAGAGGCCA+AGG | + | chr3.4:86909396-86909415 | MS.gene013335:CDS | 55.0% | |
| TCTTGCTCCTTGGCCTCTTC+GGG | - | chr3.4:86909406-86909425 | None:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | chr3.4:86907911-86907930 | MS.gene013335:CDS | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | chr3.4:86907854-86907873 | MS.gene013335:CDS | 55.0% | |
| ! | AGCAGCTCCTGGTGTCAACT+GGG | + | chr3.4:86909549-86909568 | MS.gene013335:CDS | 55.0% |
| !! | GGAGTGGGAATTTGTTGCGG+TGG | - | chr3.4:86909913-86909932 | None:intergenic | 55.0% |
| !! | GTGGGAATTTGTTGCGGTGG+TGG | - | chr3.4:86909910-86909929 | None:intergenic | 55.0% |
| !! | TGTGGTGCTGCATCAGTCCA+TGG | - | chr3.4:86909520-86909539 | None:intergenic | 55.0% |
| AGAGGCCAAGGAGCAAGAGG+AGG | + | chr3.4:86909408-86909427 | MS.gene013335:CDS | 60.0% | |
| CAGCCTATTCCAGCAGCTCC+TGG | + | chr3.4:86909538-86909557 | MS.gene013335:CDS | 60.0% | |
| CAGTTGACACCAGGAGCTGC+TGG | - | chr3.4:86909550-86909569 | None:intergenic | 60.0% | |
| CGAAGAGGCCAAGGAGCAAG+AGG | + | chr3.4:86909405-86909424 | MS.gene013335:CDS | 60.0% | |
| CGTTGCAATCGAGAACCCCC+AGG | + | chr3.4:86908694-86908713 | MS.gene013335:CDS | 60.0% | |
| GGAGCTGCTGGAATAGGCTG+TGG | - | chr3.4:86909538-86909557 | None:intergenic | 60.0% | |
| ! | CAGCAGCTCCTGGTGTCAAC+TGG | + | chr3.4:86909548-86909567 | MS.gene013335:CDS | 60.0% |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | chr3.4:86907871-86907890 | None:intergenic | 60.0% |
| AACTGGGCTGCCCCAGAAGC+TGG | + | chr3.4:86909565-86909584 | MS.gene013335:CDS | 65.0% | |
| GGGGCAGCCCAGTTGACACC+AGG | - | chr3.4:86909559-86909578 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86907791 | 86909969 | 86907791 | ID=MS.gene013335 |
| chr3.4 | mRNA | 86907791 | 86909969 | 86907791 | ID=MS.gene013335.t1;Parent=MS.gene013335 |
| chr3.4 | exon | 86907791 | 86907932 | 86907791 | ID=MS.gene013335.t1.exon1;Parent=MS.gene013335.t1 |
| chr3.4 | CDS | 86907791 | 86907932 | 86907791 | ID=cds.MS.gene013335.t1;Parent=MS.gene013335.t1 |
| chr3.4 | exon | 86908633 | 86908895 | 86908633 | ID=MS.gene013335.t1.exon2;Parent=MS.gene013335.t1 |
| chr3.4 | CDS | 86908633 | 86908895 | 86908633 | ID=cds.MS.gene013335.t1;Parent=MS.gene013335.t1 |
| chr3.4 | exon | 86909049 | 86909246 | 86909049 | ID=MS.gene013335.t1.exon3;Parent=MS.gene013335.t1 |
| chr3.4 | CDS | 86909049 | 86909246 | 86909049 | ID=cds.MS.gene013335.t1;Parent=MS.gene013335.t1 |
| chr3.4 | exon | 86909379 | 86909586 | 86909379 | ID=MS.gene013335.t1.exon4;Parent=MS.gene013335.t1 |
| chr3.4 | CDS | 86909379 | 86909586 | 86909379 | ID=cds.MS.gene013335.t1;Parent=MS.gene013335.t1 |
| chr3.4 | exon | 86909881 | 86909969 | 86909881 | ID=MS.gene013335.t1.exon5;Parent=MS.gene013335.t1 |
| chr3.4 | CDS | 86909881 | 86909969 | 86909881 | ID=cds.MS.gene013335.t1;Parent=MS.gene013335.t1 |
| Gene Sequence |
| Protein sequence |
