Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30990.t1 | XP_003602573.1 | 98.7 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 4.10E-171 | 610.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30990.t1 | O65751 | 89.3 | 300 | 31 | 1 | 1 | 299 | 1 | 300 | 5.4e-156 | 551.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30990.t1 | G7JB01 | 98.7 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 2.9e-171 | 610.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene30990 | 0.987999 | 2.50E-172 | -1.69E-46 |
| MS.gene049376 | MS.gene30990 | 0.878022 | 3.93E-69 | -1.69E-46 |
| MS.gene049387 | MS.gene30990 | 0.844535 | 7.12E-59 | -1.69E-46 |
| MS.gene050134 | MS.gene30990 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene051925 | MS.gene30990 | 0.911138 | 8.54E-83 | -1.69E-46 |
| MS.gene051927 | MS.gene30990 | 0.908033 | 2.66E-81 | -1.69E-46 |
| MS.gene052666 | MS.gene30990 | 0.853829 | 1.85E-61 | -1.69E-46 |
| MS.gene053467 | MS.gene30990 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene054624 | MS.gene30990 | 0.82253 | 2.26E-53 | -1.69E-46 |
| MS.gene057272 | MS.gene30990 | 0.832224 | 1.07E-55 | -1.69E-46 |
| MS.gene057321 | MS.gene30990 | 0.892999 | 9.45E-75 | -1.69E-46 |
| MS.gene057605 | MS.gene30990 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene059340 | MS.gene30990 | 0.856579 | 2.92E-62 | -1.69E-46 |
| MS.gene059868 | MS.gene30990 | -0.815225 | 1.03E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene30990 | 0.836866 | 7.28E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30990.t1 | MTR_3g095810 | 98.662 | 299 | 4 | 0 | 1 | 299 | 1 | 299 | 0.0 | 613 |
| MS.gene30990.t1 | MTR_3g095810 | 97.993 | 299 | 4 | 1 | 1 | 299 | 1 | 297 | 0.0 | 603 |
| MS.gene30990.t1 | MTR_7g107400 | 93.174 | 293 | 18 | 2 | 9 | 299 | 5 | 297 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30990.t1 | AT3G04770 | 75.986 | 279 | 49 | 6 | 7 | 275 | 9 | 279 | 7.37e-149 | 419 |
| MS.gene30990.t1 | AT1G72370 | 82.591 | 247 | 40 | 3 | 1 | 244 | 1 | 247 | 4.92e-145 | 409 |
| MS.gene30990.t1 | AT1G72370 | 82.591 | 247 | 40 | 3 | 1 | 244 | 1 | 247 | 5.86e-145 | 409 |
| MS.gene30990.t1 | AT3G04770 | 88.832 | 197 | 22 | 0 | 7 | 203 | 9 | 205 | 5.15e-131 | 375 |
Find 94 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTTCTTTACCAGCTTC+TGG | 0.204965 | 3.3:-79346018 | None:intergenic |
| CTCTTGCTCCTTGGCCTCTT+CGG | 0.208222 | 3.3:-79345845 | None:intergenic |
| TTCTTTCAGTTGCAGGGGAC+TGG | 0.226869 | 3.3:+79346312 | MS.gene30990:intron |
| ATAGCATCGGTTGTCTCTTT+TGG | 0.249875 | 3.3:+79345599 | MS.gene30990:CDS |
| CAGCAGCTCCTGGTGTCAAC+TGG | 0.259408 | 3.3:+79345989 | MS.gene30990:CDS |
| TTCACCTGATGGTCAGTTCT+AGG | 0.303947 | 3.3:-79345319 | None:intergenic |
| GTTCAATCTGCAAGGCCTTA+TGG | 0.305597 | 3.3:+79345166 | MS.gene30990:CDS |
| TCTTGCTCCTTGGCCTCTTC+GGG | 0.307675 | 3.3:-79345844 | None:intergenic |
| GGTATTTATATCATTAATCT+TGG | 0.324341 | 3.3:+79345073 | MS.gene30990:intron |
| TCTTTCAGTTGCAGGGGACT+GGG | 0.335061 | 3.3:+79346313 | MS.gene30990:intron |
| GAAGGAAACTTGCATTTGAT+TGG | 0.347451 | 3.3:-79345266 | None:intergenic |
| TTCATCCTCCTCTTGCTCCT+TGG | 0.369266 | 3.3:-79345854 | None:intergenic |
| ATTTGATTGGTAAAGGTTCC+AGG | 0.371234 | 3.3:-79345253 | None:intergenic |
| GCTGTCACAGATTCAATTCC+AGG | 0.382679 | 3.3:-79346371 | None:intergenic |
| CATCAGCAGCCAACATCATC+TGG | 0.391970 | 3.3:-79344258 | None:intergenic |
| ATTGAATCTGTGACAGCAAC+TGG | 0.400686 | 3.3:+79346377 | MS.gene30990:CDS |
| TCCAAGAGCAGCTTCCTTGA+TGG | 0.403359 | 3.3:-79345491 | None:intergenic |
| CCCATCAAGGAAGCTGCTCT+TGG | 0.405552 | 3.3:+79345490 | MS.gene30990:CDS |
| AATGTTCTTTACCAGCTTCT+GGG | 0.407962 | 3.3:-79346017 | None:intergenic |
| ACACCAGGAGCTGCTGGAAT+AGG | 0.410453 | 3.3:-79345982 | None:intergenic |
| TGCTTTCCCTTGTTGTTAGC+GGG | 0.413093 | 3.3:-79345577 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+GGG | 0.417623 | 3.3:-79345490 | None:intergenic |
| TGAAGCAATAACGTTCCATT+TGG | 0.418662 | 3.3:-79344309 | None:intergenic |
| ACTGGAGCTAATGCTATTGC+AGG | 0.451070 | 3.3:+79345220 | MS.gene30990:CDS |
| CAGTTGACACCAGGAGCTGC+TGG | 0.455088 | 3.3:-79345988 | None:intergenic |
| GCCATTGCTGACTTCAATGC+TGG | 0.456055 | 3.3:+79345895 | MS.gene30990:CDS |
| TGTGGTGCTGCATCAGTCCA+TGG | 0.469309 | 3.3:-79345958 | None:intergenic |
| AATCTGTGACAGCAACTGGC+TGG | 0.470930 | 3.3:+79346381 | MS.gene30990:CDS |
| GTGGGAATTTGTTGCGGTGG+TGG | 0.473747 | 3.3:-79346347 | None:intergenic |
| AACTTGCATTTGATTGGTAA+AGG | 0.474388 | 3.3:-79345260 | None:intergenic |
| CAGATTGAACAATAATGTCC+TGG | 0.474422 | 3.3:-79345153 | None:intergenic |
| CTTAAGTTTGCTCAGTACAC+TGG | 0.477075 | 3.3:+79345202 | MS.gene30990:CDS |
| AACTGGGCTGCCCCAGAAGC+TGG | 0.477922 | 3.3:+79346006 | MS.gene30990:CDS |
| AGCAGCTCCTGGTGTCAACT+GGG | 0.479182 | 3.3:+79345990 | MS.gene30990:CDS |
| TAAGAACTGCGACTTCCAAA+TGG | 0.482705 | 3.3:+79344294 | MS.gene30990:CDS |
| CAGCCTATTCCAGCAGCTCC+TGG | 0.483642 | 3.3:+79345979 | MS.gene30990:CDS |
| CCGCAACAAATTCCCACTCC+TGG | 0.483783 | 3.3:+79346353 | MS.gene30990:CDS |
| CCAATGTCAACATATCTCAT+AGG | 0.485555 | 3.3:-79345550 | None:intergenic |
| AGTGTATTCTTTCAGTTGCA+GGG | 0.499899 | 3.3:+79346306 | MS.gene30990:intron |
| AGAAACTTCAACTAGCTGCC+AGG | 0.503788 | 3.3:+79345107 | MS.gene30990:CDS |
| ATGCTTTCCCTTGTTGTTAG+CGG | 0.513106 | 3.3:-79345578 | None:intergenic |
| CTTTCAGTTGCAGGGGACTG+GGG | 0.513229 | 3.3:+79346314 | MS.gene30990:intron |
| CCTATGAGATATGTTGACAT+TGG | 0.514354 | 3.3:+79345550 | MS.gene30990:CDS |
| TGATCCTAGAACTGACCATC+AGG | 0.519085 | 3.3:+79345315 | MS.gene30990:CDS |
| AATGCTGGTGGTCCATCTGA+TGG | 0.520603 | 3.3:+79345910 | MS.gene30990:CDS |
| AGAACGGCTCTCTGTCCATA+AGG | 0.525873 | 3.3:-79345181 | None:intergenic |
| CGAAGAGGCCAAGGAGCAAG+AGG | 0.529876 | 3.3:+79345846 | MS.gene30990:CDS |
| TGCTTCAAACGCCGCAACGA+TGG | 0.530057 | 3.3:+79344325 | MS.gene30990:CDS |
| ATCTGTGACAGCAACTGGCT+GGG | 0.531636 | 3.3:+79346382 | MS.gene30990:CDS |
| GTGTCACAGAAAGCAATAGT+TGG | 0.533846 | 3.3:-79345520 | None:intergenic |
| ATCACATCCCACTTAAGACC+TGG | 0.536430 | 3.3:-79345664 | None:intergenic |
| GGGGCAGCCCAGTTGACACC+AGG | 0.539769 | 3.3:-79345997 | None:intergenic |
| TAGAGAACCCGAAGAGGCCA+AGG | 0.540338 | 3.3:+79345837 | MS.gene30990:CDS |
| CTATTCGCCCAGGTCTTAAG+TGG | 0.540613 | 3.3:+79345656 | MS.gene30990:CDS |
| AGATTGAACAATAATGTCCT+GGG | 0.542615 | 3.3:-79345152 | None:intergenic |
| CCAGGAGTGGGAATTTGTTG+CGG | 0.543589 | 3.3:-79346353 | None:intergenic |
| CTGACGGGATGAAAGTTGTT+CGG | 0.545281 | 3.3:-79344212 | None:intergenic |
| CGCAGTTCTTAGTGCCGAGG+TGG | 0.555885 | 3.3:-79344282 | None:intergenic |
| AGGTCTTAAGTGGGATGTGA+TGG | 0.569141 | 3.3:+79345666 | MS.gene30990:CDS |
| TGGAATTCCCGCTAACAACA+AGG | 0.570440 | 3.3:+79345570 | MS.gene30990:CDS |
| GTGTATTCTTTCAGTTGCAG+GGG | 0.570945 | 3.3:+79346307 | MS.gene30990:intron |
| TGTTTGTTTGCAGCCCATCA+AGG | 0.579519 | 3.3:+79345477 | MS.gene30990:intron |
| CACAGATTCAATTCCAGGAG+TGG | 0.579651 | 3.3:-79346366 | None:intergenic |
| GCAATGGCATAATCTAGAGC+AGG | 0.581740 | 3.3:-79345880 | None:intergenic |
| GTGGTCCATCTGATGGTCAG+TGG | 0.581948 | 3.3:+79345917 | MS.gene30990:CDS |
| ATGCGTGGTACTATTCGCCC+AGG | 0.584833 | 3.3:+79345646 | MS.gene30990:CDS |
| CTCGATTGCAACGATGACCC+TGG | 0.587596 | 3.3:-79345125 | None:intergenic |
| ATGTTCTTTACCAGCTTCTG+GGG | 0.588593 | 3.3:-79346016 | None:intergenic |
| GAGAAGACGAGGCTCACTGA+AGG | 0.589438 | 3.3:-79345284 | None:intergenic |
| ACAGATTCAATTCCAGGAGT+GGG | 0.591012 | 3.3:-79346365 | None:intergenic |
| AACAAGGGAAAGCATAGCAT+CGG | 0.599533 | 3.3:+79345586 | MS.gene30990:CDS |
| AGAGGCCAAGGAGCAAGAGG+AGG | 0.600295 | 3.3:+79345849 | MS.gene30990:CDS |
| GAAACTTCAACTAGCTGCCA+GGG | 0.600433 | 3.3:+79345108 | MS.gene30990:CDS |
| GGAGCTGCTGGAATAGGCTG+TGG | 0.601218 | 3.3:-79345976 | None:intergenic |
| ACATTATTGTTCAATCTGCA+AGG | 0.601975 | 3.3:+79345158 | MS.gene30990:CDS |
| ATTGCTGACTTCAATGCTGG+TGG | 0.602149 | 3.3:+79345898 | MS.gene30990:CDS |
| CTACTGCAATTGAGCAGCCA+TGG | 0.603201 | 3.3:+79345941 | MS.gene30990:CDS |
| GGAGTGGGAATTTGTTGCGG+TGG | 0.607574 | 3.3:-79346350 | None:intergenic |
| TCACATCCCACTTAAGACCT+GGG | 0.607979 | 3.3:-79345663 | None:intergenic |
| CATGGCTGCTCAATTGCAGT+AGG | 0.613104 | 3.3:-79345940 | None:intergenic |
| ATTGCAGGTAGACACACTCC+TGG | 0.622813 | 3.3:+79345235 | MS.gene30990:CDS |
| GTAGGCCACTGACCATCAGA+TGG | 0.625414 | 3.3:-79345922 | None:intergenic |
| ACCAGCATTGAAGTCAGCAA+TGG | 0.630888 | 3.3:-79345896 | None:intergenic |
| TTTGAAAGTTACCATCGTTG+CGG | 0.632625 | 3.3:-79344336 | None:intergenic |
| AGTCGCAGTTCTTAGTGCCG+AGG | 0.635317 | 3.3:-79344285 | None:intergenic |
| GGAATTCCCGCTAACAACAA+GGG | 0.640044 | 3.3:+79345571 | MS.gene30990:CDS |
| AGCTGACATCCAGATGATGT+TGG | 0.641030 | 3.3:+79344249 | MS.gene30990:CDS |
| GTACTGAGCAAACTTAAGAA+CGG | 0.651453 | 3.3:-79345197 | None:intergenic |
| GATTGAACAATAATGTCCTG+GGG | 0.658645 | 3.3:-79345151 | None:intergenic |
| TATTCGCCCAGGTCTTAAGT+GGG | 0.666814 | 3.3:+79345657 | MS.gene30990:CDS |
| TCAGTGAGGATGAGAAGACG+AGG | 0.674872 | 3.3:-79345295 | None:intergenic |
| TTGGCTGCTGATGTCCACCT+CGG | 0.712261 | 3.3:+79344268 | MS.gene30990:CDS |
| ATTGAACAATAATGTCCTGG+GGG | 0.723405 | 3.3:-79345150 | None:intergenic |
| GGTCAGTTCTAGGATCAGTG+AGG | 0.760014 | 3.3:-79345309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAATGAATACA+TGG | - | chr3.3:79346281-79346300 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | chr3.3:79345052-79345071 | MS.gene30990:intron | 10.0% |
| !!! | ATTTTAAAAGATGACAATAA+CGG | - | chr3.3:79346149-79346168 | None:intergenic | 15.0% |
| !! | AAAACAAATTGAAGATCAAA+GGG | - | chr3.3:79346122-79346141 | None:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | chr3.3:79344832-79344851 | None:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | chr3.3:79345073-79345092 | MS.gene30990:intron | 20.0% |
| !! | TAAAACAAATTGAAGATCAA+AGG | - | chr3.3:79346123-79346142 | None:intergenic | 20.0% |
| !! | TTAAGAAAAACATTAGACAA+TGG | - | chr3.3:79345795-79345814 | None:intergenic | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | chr3.3:79344959-79344978 | None:intergenic | 20.0% |
| !!! | AGGATGATTAATTACAATTT+TGG | + | chr3.3:79344518-79344537 | MS.gene30990:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | chr3.3:79345383-79345402 | MS.gene30990:intron | 20.0% |
| !!! | GTTTTGTTTTGTTTGTTTTA+CGG | + | chr3.3:79344875-79344894 | MS.gene30990:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | chr3.3:79345361-79345380 | MS.gene30990:intron | 20.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | chr3.3:79344686-79344705 | None:intergenic | 20.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | chr3.3:79345018-79345037 | MS.gene30990:intron | 25.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | chr3.3:79344409-79344428 | None:intergenic | 25.0% |
| ! | ATTTCTCTTCGACTTTAATT+TGG | + | chr3.3:79346091-79346110 | MS.gene30990:intron | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | chr3.3:79345084-79345103 | MS.gene30990:CDS | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | chr3.3:79345404-79345423 | MS.gene30990:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | chr3.3:79345083-79345102 | MS.gene30990:CDS | 25.0% |
| !! | AAAAATCTTGAGTTTAGGTT+AGG | - | chr3.3:79346067-79346086 | None:intergenic | 25.0% |
| !! | TCGTTAACAATCTAGTTTAT+AGG | + | chr3.3:79344498-79344517 | MS.gene30990:intron | 25.0% |
| !! | TCTAATGTTTTTCTTAATGC+AGG | + | chr3.3:79345798-79345817 | MS.gene30990:intron | 25.0% |
| !! | TTTCTCTTCGACTTTAATTT+GGG | + | chr3.3:79346092-79346111 | MS.gene30990:intron | 25.0% |
| !!! | AACCTAAACTCAAGATTTTT+TGG | + | chr3.3:79346067-79346086 | MS.gene30990:intron | 25.0% |
| AACACAAGGTGTAACTTAAT+TGG | - | chr3.3:79344930-79344949 | None:intergenic | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | chr3.3:79345263-79345282 | None:intergenic | 30.0% | |
| ACACAAGGTGTAACTTAATT+GGG | - | chr3.3:79344929-79344948 | None:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | chr3.3:79345158-79345177 | MS.gene30990:CDS | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | chr3.3:79345155-79345174 | None:intergenic | 30.0% | |
| ATTAACAAGCAAACATGTCA+AGG | - | chr3.3:79345353-79345372 | None:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | chr3.3:79344930-79344949 | MS.gene30990:intron | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | chr3.3:79345420-79345439 | None:intergenic | 30.0% | |
| TGCCAAAAAATCTTGAGTTT+AGG | - | chr3.3:79346072-79346091 | None:intergenic | 30.0% | |
| TGTTAAGAATCGAGATTAAG+TGG | + | chr3.3:79344457-79344476 | MS.gene30990:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | chr3.3:79344931-79344950 | MS.gene30990:intron | 30.0% | |
| ! | AATTCTGCAAAACGGTTTTT+AGG | + | chr3.3:79344584-79344603 | MS.gene30990:intron | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | chr3.3:79344697-79344716 | MS.gene30990:intron | 30.0% |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | chr3.3:79345434-79345453 | MS.gene30990:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | chr3.3:79344700-79344719 | None:intergenic | 30.0% |
| AAATGTTCTTTACCAGCTTC+TGG | - | chr3.3:79346021-79346040 | None:intergenic | 35.0% | |
| AATGTTCTTTACCAGCTTCT+GGG | - | chr3.3:79346020-79346039 | None:intergenic | 35.0% | |
| AGCAAACATGTCAAGGATAA+TGG | - | chr3.3:79345346-79345365 | None:intergenic | 35.0% | |
| AGTGTATTCTTTCAGTTGCA+GGG | + | chr3.3:79346306-79346325 | MS.gene30990:intron | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | chr3.3:79345153-79345172 | None:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | chr3.3:79345256-79345275 | None:intergenic | 35.0% | |
| CAAAACAAAACGCAACACTA+TGG | - | chr3.3:79344866-79344885 | None:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | chr3.3:79345156-79345175 | None:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | chr3.3:79345553-79345572 | None:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | chr3.3:79345550-79345569 | MS.gene30990:CDS | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | chr3.3:79345269-79345288 | None:intergenic | 35.0% | |
| GAGTGTAGTAATGATGTCTT+GGG | - | chr3.3:79346185-79346204 | None:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | chr3.3:79345154-79345173 | None:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | chr3.3:79345200-79345219 | None:intergenic | 35.0% | |
| TAGTGTATTCTTTCAGTTGC+AGG | + | chr3.3:79346305-79346324 | MS.gene30990:intron | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | chr3.3:79344312-79344331 | None:intergenic | 35.0% | |
| TGAGTGTAGTAATGATGTCT+TGG | - | chr3.3:79346186-79346205 | None:intergenic | 35.0% | |
| TTTGAAAGTTACCATCGTTG+CGG | - | chr3.3:79344339-79344358 | None:intergenic | 35.0% | |
| ! | CTGTTTGGAATTCTGCAAAA+CGG | + | chr3.3:79344576-79344595 | MS.gene30990:intron | 35.0% |
| ! | TGTTCACTTTCATTTTGTGC+TGG | + | chr3.3:79344551-79344570 | MS.gene30990:intron | 35.0% |
| AATCAAGGAACCCAAACACA+AGG | - | chr3.3:79344944-79344963 | None:intergenic | 40.0% | |
| ACACAGTGCTGTGTAAAGAA+GGG | - | chr3.3:79345772-79345791 | None:intergenic | 40.0% | |
| ACAGATTCAATTCCAGGAGT+GGG | - | chr3.3:79346368-79346387 | None:intergenic | 40.0% | |
| ATGTTCTTTACCAGCTTCTG+GGG | - | chr3.3:79346019-79346038 | None:intergenic | 40.0% | |
| ATTGAATCTGTGACAGCAAC+TGG | + | chr3.3:79346377-79346396 | MS.gene30990:CDS | 40.0% | |
| GTGTATTCTTTCAGTTGCAG+GGG | + | chr3.3:79346307-79346326 | MS.gene30990:intron | 40.0% | |
| GTGTCACAGAAAGCAATAGT+TGG | - | chr3.3:79345523-79345542 | None:intergenic | 40.0% | |
| TAAGAACTGCGACTTCCAAA+TGG | + | chr3.3:79344294-79344313 | MS.gene30990:CDS | 40.0% | |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | chr3.3:79345586-79345605 | MS.gene30990:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | chr3.3:79345333-79345352 | None:intergenic | 40.0% |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | chr3.3:79345202-79345221 | MS.gene30990:CDS | 40.0% |
| ! | CTTTTATAGAGAACCCGAAG+AGG | + | chr3.3:79345831-79345850 | MS.gene30990:CDS | 40.0% |
| ! | TTTTAGGCTCTGTTTGGTAG+CGG | + | chr3.3:79344600-79344619 | MS.gene30990:intron | 40.0% |
| !! | AACGGTTTTTAGGCTCTGTT+TGG | + | chr3.3:79344594-79344613 | MS.gene30990:intron | 40.0% |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | chr3.3:79345581-79345600 | None:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | chr3.3:79344231-79344250 | None:intergenic | 40.0% |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | chr3.3:79344230-79344249 | None:intergenic | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | chr3.3:79345599-79345618 | MS.gene30990:CDS | 40.0% |
| ACTGGAGCTAATGCTATTGC+AGG | + | chr3.3:79345220-79345239 | MS.gene30990:CDS | 45.0% | |
| AGAAACTTCAACTAGCTGCC+AGG | + | chr3.3:79345107-79345126 | MS.gene30990:CDS | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | chr3.3:79344249-79344268 | MS.gene30990:CDS | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | chr3.3:79345666-79345685 | MS.gene30990:CDS | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | chr3.3:79345667-79345686 | None:intergenic | 45.0% | |
| CACAGATTCAATTCCAGGAG+TGG | - | chr3.3:79346369-79346388 | None:intergenic | 45.0% | |
| CGCAACACTATGGATCTGTT+TGG | - | chr3.3:79344856-79344875 | None:intergenic | 45.0% | |
| CTGACGGGATGAAAGTTGTT+CGG | - | chr3.3:79344215-79344234 | None:intergenic | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | chr3.3:79345108-79345127 | MS.gene30990:CDS | 45.0% | |
| GACACAGTGCTGTGTAAAGA+AGG | - | chr3.3:79345773-79345792 | None:intergenic | 45.0% | |
| GCTGTCACAGATTCAATTCC+AGG | - | chr3.3:79346374-79346393 | None:intergenic | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | chr3.3:79345571-79345590 | MS.gene30990:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | chr3.3:79345166-79345185 | MS.gene30990:CDS | 45.0% | |
| TATTCGCCCAGGTCTTAAGT+GGG | + | chr3.3:79345657-79345676 | MS.gene30990:CDS | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | chr3.3:79345666-79345685 | None:intergenic | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | chr3.3:79345315-79345334 | MS.gene30990:CDS | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | chr3.3:79345570-79345589 | MS.gene30990:CDS | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | chr3.3:79345477-79345496 | MS.gene30990:intron | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | chr3.3:79345322-79345341 | None:intergenic | 45.0% | |
| ! | ACCAGCATTGAAGTCAGCAA+TGG | - | chr3.3:79345899-79345918 | None:intergenic | 45.0% |
| ! | GCAATGGCATAATCTAGAGC+AGG | - | chr3.3:79345883-79345902 | None:intergenic | 45.0% |
| !! | ATTGCTGACTTCAATGCTGG+TGG | + | chr3.3:79345898-79345917 | MS.gene30990:CDS | 45.0% |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | chr3.3:79345580-79345599 | None:intergenic | 45.0% |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | chr3.3:79344561-79344580 | MS.gene30990:intron | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | chr3.3:79345606-79345625 | MS.gene30990:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | chr3.3:79345615-79345634 | MS.gene30990:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | chr3.3:79345611-79345630 | MS.gene30990:CDS | 45.0% |
| AATCTGTGACAGCAACTGGC+TGG | + | chr3.3:79346381-79346400 | MS.gene30990:CDS | 50.0% | |
| AATGCTGGTGGTCCATCTGA+TGG | + | chr3.3:79345910-79345929 | MS.gene30990:CDS | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | chr3.3:79345184-79345203 | None:intergenic | 50.0% | |
| ATCTGTGACAGCAACTGGCT+GGG | + | chr3.3:79346382-79346401 | MS.gene30990:CDS | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | chr3.3:79345235-79345254 | MS.gene30990:CDS | 50.0% | |
| CATCAGCAGCCAACATCATC+TGG | - | chr3.3:79344261-79344280 | None:intergenic | 50.0% | |
| CATGGCTGCTCAATTGCAGT+AGG | - | chr3.3:79345943-79345962 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | chr3.3:79345493-79345512 | None:intergenic | 50.0% | |
| CTACTGCAATTGAGCAGCCA+TGG | + | chr3.3:79345941-79345960 | MS.gene30990:CDS | 50.0% | |
| CTATTCGCCCAGGTCTTAAG+TGG | + | chr3.3:79345656-79345675 | MS.gene30990:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | chr3.3:79345298-79345317 | None:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | chr3.3:79345494-79345513 | None:intergenic | 50.0% | |
| TCTTTCAGTTGCAGGGGACT+GGG | + | chr3.3:79346313-79346332 | MS.gene30990:intron | 50.0% | |
| TTCATCCTCCTCTTGCTCCT+TGG | - | chr3.3:79345857-79345876 | None:intergenic | 50.0% | |
| TTCTTTCAGTTGCAGGGGAC+TGG | + | chr3.3:79346312-79346331 | MS.gene30990:intron | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | chr3.3:79345631-79345650 | MS.gene30990:CDS | 50.0% |
| !! | CCAGGAGTGGGAATTTGTTG+CGG | - | chr3.3:79346356-79346375 | None:intergenic | 50.0% |
| !! | GCCATTGCTGACTTCAATGC+TGG | + | chr3.3:79345895-79345914 | MS.gene30990:CDS | 50.0% |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | chr3.3:79345312-79345331 | None:intergenic | 50.0% |
| ACACCAGGAGCTGCTGGAAT+AGG | - | chr3.3:79345985-79346004 | None:intergenic | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | chr3.3:79344288-79344307 | None:intergenic | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | chr3.3:79345646-79345665 | MS.gene30990:CDS | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | chr3.3:79345490-79345509 | MS.gene30990:CDS | 55.0% | |
| CCGCAACAAATTCCCACTCC+TGG | + | chr3.3:79346353-79346372 | MS.gene30990:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | chr3.3:79345128-79345147 | None:intergenic | 55.0% | |
| CTCTTGCTCCTTGGCCTCTT+CGG | - | chr3.3:79345848-79345867 | None:intergenic | 55.0% | |
| CTTTCAGTTGCAGGGGACTG+GGG | + | chr3.3:79346314-79346333 | MS.gene30990:intron | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | chr3.3:79345287-79345306 | None:intergenic | 55.0% | |
| GTAGGCCACTGACCATCAGA+TGG | - | chr3.3:79345925-79345944 | None:intergenic | 55.0% | |
| GTGGTCCATCTGATGGTCAG+TGG | + | chr3.3:79345917-79345936 | MS.gene30990:CDS | 55.0% | |
| TAGAGAACCCGAAGAGGCCA+AGG | + | chr3.3:79345837-79345856 | MS.gene30990:CDS | 55.0% | |
| TCTTGCTCCTTGGCCTCTTC+GGG | - | chr3.3:79345847-79345866 | None:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | chr3.3:79344325-79344344 | MS.gene30990:CDS | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | chr3.3:79344268-79344287 | MS.gene30990:CDS | 55.0% | |
| ! | AGCAGCTCCTGGTGTCAACT+GGG | + | chr3.3:79345990-79346009 | MS.gene30990:CDS | 55.0% |
| !! | GGAGTGGGAATTTGTTGCGG+TGG | - | chr3.3:79346353-79346372 | None:intergenic | 55.0% |
| !! | GTGGGAATTTGTTGCGGTGG+TGG | - | chr3.3:79346350-79346369 | None:intergenic | 55.0% |
| !! | TGTGGTGCTGCATCAGTCCA+TGG | - | chr3.3:79345961-79345980 | None:intergenic | 55.0% |
| AGAGGCCAAGGAGCAAGAGG+AGG | + | chr3.3:79345849-79345868 | MS.gene30990:CDS | 60.0% | |
| CAGCCTATTCCAGCAGCTCC+TGG | + | chr3.3:79345979-79345998 | MS.gene30990:CDS | 60.0% | |
| CAGTTGACACCAGGAGCTGC+TGG | - | chr3.3:79345991-79346010 | None:intergenic | 60.0% | |
| CGAAGAGGCCAAGGAGCAAG+AGG | + | chr3.3:79345846-79345865 | MS.gene30990:CDS | 60.0% | |
| CGTTGCAATCGAGAACCCCC+AGG | + | chr3.3:79345135-79345154 | MS.gene30990:CDS | 60.0% | |
| GGAGCTGCTGGAATAGGCTG+TGG | - | chr3.3:79345979-79345998 | None:intergenic | 60.0% | |
| ! | CAGCAGCTCCTGGTGTCAAC+TGG | + | chr3.3:79345989-79346008 | MS.gene30990:CDS | 60.0% |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | chr3.3:79344285-79344304 | None:intergenic | 60.0% |
| AACTGGGCTGCCCCAGAAGC+TGG | + | chr3.3:79346006-79346025 | MS.gene30990:CDS | 65.0% | |
| GGGGCAGCCCAGTTGACACC+AGG | - | chr3.3:79346000-79346019 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79344205 | 79346409 | 79344205 | ID=MS.gene30990 |
| chr3.3 | mRNA | 79344205 | 79346409 | 79344205 | ID=MS.gene30990.t1;Parent=MS.gene30990 |
| chr3.3 | exon | 79344205 | 79344346 | 79344205 | ID=MS.gene30990.t1.exon1;Parent=MS.gene30990.t1 |
| chr3.3 | CDS | 79344205 | 79344346 | 79344205 | ID=cds.MS.gene30990.t1;Parent=MS.gene30990.t1 |
| chr3.3 | exon | 79345074 | 79345336 | 79345074 | ID=MS.gene30990.t1.exon2;Parent=MS.gene30990.t1 |
| chr3.3 | CDS | 79345074 | 79345336 | 79345074 | ID=cds.MS.gene30990.t1;Parent=MS.gene30990.t1 |
| chr3.3 | exon | 79345490 | 79345687 | 79345490 | ID=MS.gene30990.t1.exon3;Parent=MS.gene30990.t1 |
| chr3.3 | CDS | 79345490 | 79345687 | 79345490 | ID=cds.MS.gene30990.t1;Parent=MS.gene30990.t1 |
| chr3.3 | exon | 79345820 | 79346027 | 79345820 | ID=MS.gene30990.t1.exon4;Parent=MS.gene30990.t1 |
| chr3.3 | CDS | 79345820 | 79346027 | 79345820 | ID=cds.MS.gene30990.t1;Parent=MS.gene30990.t1 |
| chr3.3 | exon | 79346321 | 79346409 | 79346321 | ID=MS.gene30990.t1.exon5;Parent=MS.gene30990.t1 |
| chr3.3 | CDS | 79346321 | 79346409 | 79346321 | ID=cds.MS.gene30990.t1;Parent=MS.gene30990.t1 |
| Gene Sequence |
| Protein sequence |
