AlfalfaGEDB | MS.gene06433

M. sativa cultivar XinJiangDaYe / MS.gene06433

KEGG: K02998
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00318.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06433.t1	XP_003602573.1	98.7	299	4	0	1	299	1	299	4.10E-171	610.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06433.t1	O65751	89.3	300	31	1	1	299	1	300	5.4e-156	551.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06433.t1	G7JB01	98.7	299	4	0	1	299	1	299	2.9e-171	610.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049306	MS.gene06433	0.989933	2.67E-180	-1.69E-46
MS.gene049376	MS.gene06433	0.880775	4.16E-70	-1.69E-46
MS.gene049387	MS.gene06433	0.836116	1.13E-56	-1.69E-46
MS.gene051925	MS.gene06433	0.905649	3.43E-80	-1.69E-46
MS.gene051927	MS.gene06433	0.903867	2.22E-79	-1.69E-46
MS.gene052666	MS.gene06433	0.845356	4.27E-59	-1.69E-46
MS.gene054548	MS.gene06433	-0.801447	8.97E-49	-1.69E-46
MS.gene054624	MS.gene06433	0.810178	1.31E-50	-1.69E-46
MS.gene057272	MS.gene06433	0.81882	1.61E-52	-1.69E-46
MS.gene057321	MS.gene06433	0.888321	6.55E-73	-1.69E-46
MS.gene057605	MS.gene06433	0.807255	5.53E-50	-1.69E-46
MS.gene059340	MS.gene06433	0.847903	8.61E-60	-1.69E-46
MS.gene059868	MS.gene06433	-0.822392	2.43E-53	-1.69E-46
MS.gene060483	MS.gene06433	0.827175	1.81E-54	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene020578	MS.gene06433	PPI
MS.gene06433	MS.gene023820	PPI
MS.gene049306	MS.gene06433	PPI
MS.gene06433	MS.gene053443	PPI
MS.gene37037	MS.gene06433	PPI
MS.gene06433	MS.gene83444	PPI
MS.gene41916	MS.gene06433	PPI
MS.gene007610	MS.gene06433	PPI
MS.gene054937	MS.gene06433	PPI
MS.gene06433	MS.gene014808	PPI
MS.gene072925	MS.gene06433	PPI
MS.gene037324	MS.gene06433	PPI
MS.gene06433	MS.gene022825	PPI
MS.gene82426	MS.gene06433	PPI
MS.gene072924	MS.gene06433	PPI
MS.gene32604	MS.gene06433	PPI
MS.gene028153	MS.gene06433	PPI
MS.gene06433	MS.gene073888	PPI
MS.gene06433	MS.gene051748	PPI
MS.gene27668	MS.gene06433	PPI
MS.gene99744	MS.gene06433	PPI
MS.gene014809	MS.gene06433	PPI
MS.gene029880	MS.gene06433	PPI
MS.gene52188	MS.gene06433	PPI
MS.gene52415	MS.gene06433	PPI
MS.gene029242	MS.gene06433	PPI
MS.gene53546	MS.gene06433	PPI
MS.gene022824	MS.gene06433	PPI
MS.gene023015	MS.gene06433	PPI
MS.gene72708	MS.gene06433	PPI
MS.gene073795	MS.gene06433	PPI
MS.gene027323	MS.gene06433	PPI
MS.gene53517	MS.gene06433	PPI
MS.gene06433	MS.gene72768	PPI
MS.gene06433	MS.gene64519	PPI
MS.gene072926	MS.gene06433	PPI
MS.gene065297	MS.gene06433	PPI
MS.gene007336	MS.gene06433	PPI
MS.gene06433	MS.gene84455	PPI
MS.gene06433	MS.gene007334	PPI
MS.gene013335	MS.gene06433	PPI
MS.gene06433	MS.gene061898	PPI
MS.gene06433	MS.gene007335	PPI
MS.gene004569	MS.gene06433	PPI
MS.gene073911	MS.gene06433	PPI
MS.gene23040	MS.gene06433	PPI
MS.gene06433	MS.gene001986	PPI
MS.gene06433	MS.gene053467	PPI
MS.gene24639	MS.gene06433	PPI
MS.gene82489	MS.gene06433	PPI
MS.gene056257	MS.gene06433	PPI
MS.gene018560	MS.gene06433	PPI
MS.gene034951	MS.gene06433	PPI
MS.gene06433	MS.gene014807	PPI
MS.gene020577	MS.gene06433	PPI
MS.gene06433	MS.gene32606	PPI
MS.gene06433	MS.gene007607	PPI
MS.gene09852	MS.gene06433	PPI
MS.gene06433	MS.gene47371	PPI
MS.gene06433	MS.gene073358	PPI
MS.gene06433	MS.gene86495	PPI
MS.gene30990	MS.gene06433	PPI
MS.gene06433	MS.gene00309	PPI
MS.gene30895	MS.gene06433	PPI
MS.gene059422	MS.gene06433	PPI
MS.gene06433	MS.gene054186	PPI
MS.gene051746	MS.gene06433	PPI
MS.gene020094	MS.gene06433	PPI
MS.gene32605	MS.gene06433	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene06433.t1	MTR_3g095810	98.662	299	4	0	1	299	1	299	613
MS.gene06433.t1	MTR_3g095810	97.993	299	4	1	1	299	1	297	603
MS.gene06433.t1	MTR_7g107400	93.174	293	18	2	9	299	5	297	534

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06433.t1	AT3G04770	75.986	279	49	6	7	275	9	279	7.37e-149	419
MS.gene06433.t1	AT1G72370	82.591	247	40	3	1	244	1	247	4.92e-145	409
MS.gene06433.t1	AT1G72370	82.591	247	40	3	1	244	1	247	5.86e-145	409
MS.gene06433.t1	AT3G04770	88.832	197	22	0	7	203	9	205	5.15e-131	375

Find 94 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTCTTTACCAGCTTC+TGG	0.204965	3.2:-79987663	None:intergenic
CTCTTGCTCCTTGGCCTCTT+CGG	0.208222	3.2:-79987490	None:intergenic
TTCTTTCAGTTGCAGGGGAC+TGG	0.226869	3.2:+79987957	MS.gene06433:intron
ATAGCATCGGTTGTCTCTTT+TGG	0.249875	3.2:+79987244	MS.gene06433:CDS
CAGCAGCTCCTGGTGTCAAC+TGG	0.259408	3.2:+79987634	MS.gene06433:CDS
TTCACCTGATGGTCAGTTCT+AGG	0.303947	3.2:-79986964	None:intergenic
GTTCAATCTGCAAGGCCTTA+TGG	0.305597	3.2:+79986811	MS.gene06433:CDS
TCTTGCTCCTTGGCCTCTTC+GGG	0.307675	3.2:-79987489	None:intergenic
GGTATTTATATCATTAATCT+TGG	0.324341	3.2:+79986718	MS.gene06433:intron
TCTTTCAGTTGCAGGGGACT+GGG	0.335061	3.2:+79987958	MS.gene06433:intron
GAAGGAAACTTGCATTTGAT+TGG	0.347451	3.2:-79986911	None:intergenic
TTCATCCTCCTCTTGCTCCT+TGG	0.369266	3.2:-79987499	None:intergenic
ATTTGATTGGTAAAGGTTCC+AGG	0.371234	3.2:-79986898	None:intergenic
GCTGTCACAGATTCAATTCC+AGG	0.382679	3.2:-79988016	None:intergenic
CATCAGCAGCCAACATCATC+TGG	0.391970	3.2:-79985910	None:intergenic
ATTGAATCTGTGACAGCAAC+TGG	0.400686	3.2:+79988022	MS.gene06433:CDS
TCCAAGAGCAGCTTCCTTGA+TGG	0.403359	3.2:-79987136	None:intergenic
CCCATCAAGGAAGCTGCTCT+TGG	0.405552	3.2:+79987135	MS.gene06433:CDS
AATGTTCTTTACCAGCTTCT+GGG	0.407962	3.2:-79987662	None:intergenic
ACACCAGGAGCTGCTGGAAT+AGG	0.410453	3.2:-79987627	None:intergenic
TGCTTTCCCTTGTTGTTAGC+GGG	0.413093	3.2:-79987222	None:intergenic
CCAAGAGCAGCTTCCTTGAT+GGG	0.417623	3.2:-79987135	None:intergenic
TGAAGCAATAACGTTCCATT+TGG	0.418662	3.2:-79985961	None:intergenic
ACTGGAGCTAATGCTATTGC+AGG	0.451070	3.2:+79986865	MS.gene06433:CDS
CAGTTGACACCAGGAGCTGC+TGG	0.455088	3.2:-79987633	None:intergenic
GCCATTGCTGACTTCAATGC+TGG	0.456055	3.2:+79987540	MS.gene06433:CDS
TGTGGTGCTGCATCAGTCCA+TGG	0.469309	3.2:-79987603	None:intergenic
AATCTGTGACAGCAACTGGC+TGG	0.470930	3.2:+79988026	MS.gene06433:CDS
GTGGGAATTTGTTGCGGTGG+TGG	0.473747	3.2:-79987992	None:intergenic
AACTTGCATTTGATTGGTAA+AGG	0.474388	3.2:-79986905	None:intergenic
CAGATTGAACAATAATGTCC+TGG	0.474422	3.2:-79986798	None:intergenic
CTTAAGTTTGCTCAGTACAC+TGG	0.477075	3.2:+79986847	MS.gene06433:CDS
AACTGGGCTGCCCCAGAAGC+TGG	0.477922	3.2:+79987651	MS.gene06433:CDS
AGCAGCTCCTGGTGTCAACT+GGG	0.479182	3.2:+79987635	MS.gene06433:CDS
TAAGAACTGCGACTTCCAAA+TGG	0.482705	3.2:+79985946	MS.gene06433:CDS
CAGCCTATTCCAGCAGCTCC+TGG	0.483642	3.2:+79987624	MS.gene06433:CDS
CCGCAACAAATTCCCACTCC+TGG	0.483783	3.2:+79987998	MS.gene06433:CDS
CCAATGTCAACATATCTCAT+AGG	0.485555	3.2:-79987195	None:intergenic
AGTGTATTCTTTCAGTTGCA+GGG	0.499899	3.2:+79987951	MS.gene06433:intron
AGAAACTTCAACTAGCTGCC+AGG	0.503788	3.2:+79986752	MS.gene06433:CDS
ATGCTTTCCCTTGTTGTTAG+CGG	0.513106	3.2:-79987223	None:intergenic
CTTTCAGTTGCAGGGGACTG+GGG	0.513229	3.2:+79987959	MS.gene06433:intron
CCTATGAGATATGTTGACAT+TGG	0.514354	3.2:+79987195	MS.gene06433:CDS
TGATCCTAGAACTGACCATC+AGG	0.519085	3.2:+79986960	MS.gene06433:CDS
AATGCTGGTGGTCCATCTGA+TGG	0.520603	3.2:+79987555	MS.gene06433:CDS
AGAACGGCTCTCTGTCCATA+AGG	0.525873	3.2:-79986826	None:intergenic
CGAAGAGGCCAAGGAGCAAG+AGG	0.529876	3.2:+79987491	MS.gene06433:CDS
TGCTTCAAACGCCGCAACGA+TGG	0.530057	3.2:+79985977	MS.gene06433:CDS
ATCTGTGACAGCAACTGGCT+GGG	0.531636	3.2:+79988027	MS.gene06433:CDS
GTGTCACAGAAAGCAATAGT+TGG	0.533846	3.2:-79987165	None:intergenic
ATCACATCCCACTTAAGACC+TGG	0.536430	3.2:-79987309	None:intergenic
GGGGCAGCCCAGTTGACACC+AGG	0.539769	3.2:-79987642	None:intergenic
TAGAGAACCCGAAGAGGCCA+AGG	0.540338	3.2:+79987482	MS.gene06433:CDS
CTATTCGCCCAGGTCTTAAG+TGG	0.540613	3.2:+79987301	MS.gene06433:CDS
AGATTGAACAATAATGTCCT+GGG	0.542615	3.2:-79986797	None:intergenic
CCAGGAGTGGGAATTTGTTG+CGG	0.543589	3.2:-79987998	None:intergenic
CTGACGGGATGAAAGTTGTT+CGG	0.545281	3.2:-79985864	None:intergenic
CGCAGTTCTTAGTGCCGAGG+TGG	0.555885	3.2:-79985934	None:intergenic
AGGTCTTAAGTGGGATGTGA+TGG	0.569141	3.2:+79987311	MS.gene06433:CDS
TGGAATTCCCGCTAACAACA+AGG	0.570440	3.2:+79987215	MS.gene06433:CDS
GTGTATTCTTTCAGTTGCAG+GGG	0.570945	3.2:+79987952	MS.gene06433:intron
TGTTTGTTTGCAGCCCATCA+AGG	0.579519	3.2:+79987122	MS.gene06433:intron
CACAGATTCAATTCCAGGAG+TGG	0.579651	3.2:-79988011	None:intergenic
GCAATGGCATAATCTAGAGC+AGG	0.581740	3.2:-79987525	None:intergenic
GTGGTCCATCTGATGGTCAG+TGG	0.581948	3.2:+79987562	MS.gene06433:CDS
ATGCGTGGTACTATTCGCCC+AGG	0.584833	3.2:+79987291	MS.gene06433:CDS
CTCGATTGCAACGATGACCC+TGG	0.587596	3.2:-79986770	None:intergenic
ATGTTCTTTACCAGCTTCTG+GGG	0.588593	3.2:-79987661	None:intergenic
GAGAAGACGAGGCTCACTGA+AGG	0.589438	3.2:-79986929	None:intergenic
ACAGATTCAATTCCAGGAGT+GGG	0.591012	3.2:-79988010	None:intergenic
AACAAGGGAAAGCATAGCAT+CGG	0.599533	3.2:+79987231	MS.gene06433:CDS
AGAGGCCAAGGAGCAAGAGG+AGG	0.600295	3.2:+79987494	MS.gene06433:CDS
GAAACTTCAACTAGCTGCCA+GGG	0.600433	3.2:+79986753	MS.gene06433:CDS
GGAGCTGCTGGAATAGGCTG+TGG	0.601218	3.2:-79987621	None:intergenic
ACATTATTGTTCAATCTGCA+AGG	0.601975	3.2:+79986803	MS.gene06433:CDS
ATTGCTGACTTCAATGCTGG+TGG	0.602149	3.2:+79987543	MS.gene06433:CDS
CTACTGCAATTGAGCAGCCA+TGG	0.603201	3.2:+79987586	MS.gene06433:CDS
GGAGTGGGAATTTGTTGCGG+TGG	0.607574	3.2:-79987995	None:intergenic
TCACATCCCACTTAAGACCT+GGG	0.607979	3.2:-79987308	None:intergenic
CATGGCTGCTCAATTGCAGT+AGG	0.613104	3.2:-79987585	None:intergenic
ATTGCAGGTAGACACACTCC+TGG	0.622813	3.2:+79986880	MS.gene06433:CDS
GTAGGCCACTGACCATCAGA+TGG	0.625414	3.2:-79987567	None:intergenic
ACCAGCATTGAAGTCAGCAA+TGG	0.630888	3.2:-79987541	None:intergenic
TTTGAAAGTTACCATCGTTG+CGG	0.632625	3.2:-79985988	None:intergenic
AGTCGCAGTTCTTAGTGCCG+AGG	0.635317	3.2:-79985937	None:intergenic
GGAATTCCCGCTAACAACAA+GGG	0.640044	3.2:+79987216	MS.gene06433:CDS
AGCTGACATCCAGATGATGT+TGG	0.641030	3.2:+79985901	MS.gene06433:CDS
GTACTGAGCAAACTTAAGAA+CGG	0.651453	3.2:-79986842	None:intergenic
GATTGAACAATAATGTCCTG+GGG	0.658645	3.2:-79986796	None:intergenic
TATTCGCCCAGGTCTTAAGT+GGG	0.666814	3.2:+79987302	MS.gene06433:CDS
TCAGTGAGGATGAGAAGACG+AGG	0.674872	3.2:-79986940	None:intergenic
TTGGCTGCTGATGTCCACCT+CGG	0.712261	3.2:+79985920	MS.gene06433:CDS
ATTGAACAATAATGTCCTGG+GGG	0.723405	3.2:-79986795	None:intergenic
GGTCAGTTCTAGGATCAGTG+AGG	0.760014	3.2:-79986954	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAAAAAAAAATGAATACA+TGG	-	chr3.2:79987926-79987945	None:intergenic	10.0%
!!!	TTTGTTTTTTGTTTTAATTT+AGG	+	chr3.2:79986697-79986716	MS.gene06433:intron	10.0%
!!!	ATTTTAAAAGATGACAATAA+CGG	-	chr3.2:79987794-79987813	None:intergenic	15.0%
!!	AAAACAAATTGAAGATCAAA+GGG	-	chr3.2:79987767-79987786	None:intergenic	20.0%
!!	AAAACTCATATTTAAGCTAA+TGG	-	chr3.2:79986483-79986502	None:intergenic	20.0%
!!	GGTATTTATATCATTAATCT+TGG	+	chr3.2:79986718-79986737	MS.gene06433:intron	20.0%
!!	TAAAACAAATTGAAGATCAA+AGG	-	chr3.2:79987768-79987787	None:intergenic	20.0%
!!	TTAAGAAAAACATTAGACAA+TGG	-	chr3.2:79987440-79987459	None:intergenic	20.0%
!!	TTGTAATGATGATATAATCA+AGG	-	chr3.2:79986610-79986629	None:intergenic	20.0%
!!!	AGGATGATTAATTACAATTT+TGG	+	chr3.2:79986169-79986188	MS.gene06433:intron	20.0%
!!!	GCTATATTTTTTGTTGTTTT+AGG	+	chr3.2:79987028-79987047	MS.gene06433:intron	20.0%
!!!	GTTTTGTTTTGTTTGTTTTA+CGG	+	chr3.2:79986526-79986545	MS.gene06433:intron	20.0%
!!!	TTGCTTGTTAATATCAATTA+TGG	+	chr3.2:79987006-79987025	MS.gene06433:intron	20.0%
!!!	TTTTATAGGTTAAAGCTTAT+AGG	-	chr3.2:79986337-79986356	None:intergenic	20.0%
!	AATGTTCAGTAGACTAAATA+TGG	+	chr3.2:79986663-79986682	MS.gene06433:intron	25.0%
!	ATTAAGAAACACAATACTAG+AGG	-	chr3.2:79986060-79986079	None:intergenic	25.0%
!	ATTTCTCTTCGACTTTAATT+TGG	+	chr3.2:79987736-79987755	MS.gene06433:intron	25.0%
!	CATTAATCTTGGAAAAACTT+GGG	+	chr3.2:79986729-79986748	MS.gene06433:CDS	25.0%
!	GGCTTATATATTTCCTTTAT+TGG	+	chr3.2:79987049-79987068	MS.gene06433:intron	25.0%
!	TCATTAATCTTGGAAAAACT+TGG	+	chr3.2:79986728-79986747	MS.gene06433:CDS	25.0%
!!	AAAAATCTTGAGTTTAGGTT+AGG	-	chr3.2:79987712-79987731	None:intergenic	25.0%
!!	TCGTTAACAATCTAGTTTAT+AGG	+	chr3.2:79986149-79986168	MS.gene06433:intron	25.0%
!!	TCTAATGTTTTTCTTAATGC+AGG	+	chr3.2:79987443-79987462	MS.gene06433:intron	25.0%
!!	TTTCTCTTCGACTTTAATTT+GGG	+	chr3.2:79987737-79987756	MS.gene06433:intron	25.0%
!!!	AACCTAAACTCAAGATTTTT+TGG	+	chr3.2:79987712-79987731	MS.gene06433:intron	25.0%
	AACACAAGGTGTAACTTAAT+TGG	-	chr3.2:79986581-79986600	None:intergenic	30.0%
	AACTTGCATTTGATTGGTAA+AGG	-	chr3.2:79986908-79986927	None:intergenic	30.0%
	ACACAAGGTGTAACTTAATT+GGG	-	chr3.2:79986580-79986599	None:intergenic	30.0%
	ACATTATTGTTCAATCTGCA+AGG	+	chr3.2:79986803-79986822	MS.gene06433:CDS	30.0%
	AGATTGAACAATAATGTCCT+GGG	-	chr3.2:79986800-79986819	None:intergenic	30.0%
	ATTAACAAGCAAACATGTCA+AGG	-	chr3.2:79986998-79987017	None:intergenic	30.0%
	ATTAAGTTACACCTTGTGTT+TGG	+	chr3.2:79986581-79986600	MS.gene06433:intron	30.0%
	GCACAAATATCAACCAATAA+AGG	-	chr3.2:79987065-79987084	None:intergenic	30.0%
	TGCCAAAAAATCTTGAGTTT+AGG	-	chr3.2:79987717-79987736	None:intergenic	30.0%
	TGTTAAGAATCGAGATTAAG+TGG	+	chr3.2:79986108-79986127	MS.gene06433:intron	30.0%
	TTAAGTTACACCTTGTGTTT+GGG	+	chr3.2:79986582-79986601	MS.gene06433:intron	30.0%
!	AATTCTGCAAAACGGTTTTT+AGG	+	chr3.2:79986235-79986254	MS.gene06433:intron	30.0%
!	CCTATAAAAAAGTGTAGCAT+TGG	+	chr3.2:79986348-79986367	MS.gene06433:intron	30.0%
!!	TTGTGCATTTCGCTTTTATA+AGG	+	chr3.2:79987079-79987098	MS.gene06433:intron	30.0%
!!!	CCAATGCTACACTTTTTTAT+AGG	-	chr3.2:79986351-79986370	None:intergenic	30.0%
	AAATGTTCTTTACCAGCTTC+TGG	-	chr3.2:79987666-79987685	None:intergenic	35.0%
	AATGTTCTTTACCAGCTTCT+GGG	-	chr3.2:79987665-79987684	None:intergenic	35.0%
	AGCAAACATGTCAAGGATAA+TGG	-	chr3.2:79986991-79987010	None:intergenic	35.0%
	AGTGTATTCTTTCAGTTGCA+GGG	+	chr3.2:79987951-79987970	MS.gene06433:intron	35.0%
	ATTGAACAATAATGTCCTGG+GGG	-	chr3.2:79986798-79986817	None:intergenic	35.0%
	ATTTGATTGGTAAAGGTTCC+AGG	-	chr3.2:79986901-79986920	None:intergenic	35.0%
	CAAAACAAAACGCAACACTA+TGG	-	chr3.2:79986517-79986536	None:intergenic	35.0%
	CAGATTGAACAATAATGTCC+TGG	-	chr3.2:79986801-79986820	None:intergenic	35.0%
	CCAATGTCAACATATCTCAT+AGG	-	chr3.2:79987198-79987217	None:intergenic	35.0%
	CCTATGAGATATGTTGACAT+TGG	+	chr3.2:79987195-79987214	MS.gene06433:CDS	35.0%
	GAAGGAAACTTGCATTTGAT+TGG	-	chr3.2:79986914-79986933	None:intergenic	35.0%
	GAGTGTAGTAATGATGTCTT+GGG	-	chr3.2:79987830-79987849	None:intergenic	35.0%
	GATTGAACAATAATGTCCTG+GGG	-	chr3.2:79986799-79986818	None:intergenic	35.0%
	GTACTGAGCAAACTTAAGAA+CGG	-	chr3.2:79986845-79986864	None:intergenic	35.0%
	TAGTGTATTCTTTCAGTTGC+AGG	+	chr3.2:79987950-79987969	MS.gene06433:intron	35.0%
	TGAAGCAATAACGTTCCATT+TGG	-	chr3.2:79985964-79985983	None:intergenic	35.0%
	TGAGTGTAGTAATGATGTCT+TGG	-	chr3.2:79987831-79987850	None:intergenic	35.0%
	TTTGAAAGTTACCATCGTTG+CGG	-	chr3.2:79985991-79986010	None:intergenic	35.0%
!	CTGTTTGGAATTCTGCAAAA+CGG	+	chr3.2:79986227-79986246	MS.gene06433:intron	35.0%
!	TGTTCACTTTCATTTTGTGC+TGG	+	chr3.2:79986202-79986221	MS.gene06433:intron	35.0%
	AATCAAGGAACCCAAACACA+AGG	-	chr3.2:79986595-79986614	None:intergenic	40.0%
	ACACAGTGCTGTGTAAAGAA+GGG	-	chr3.2:79987417-79987436	None:intergenic	40.0%
	ACAGATTCAATTCCAGGAGT+GGG	-	chr3.2:79988013-79988032	None:intergenic	40.0%
	ATGTTCTTTACCAGCTTCTG+GGG	-	chr3.2:79987664-79987683	None:intergenic	40.0%
	ATTGAATCTGTGACAGCAAC+TGG	+	chr3.2:79988022-79988041	MS.gene06433:CDS	40.0%
	GTGTATTCTTTCAGTTGCAG+GGG	+	chr3.2:79987952-79987971	MS.gene06433:intron	40.0%
	GTGTCACAGAAAGCAATAGT+TGG	-	chr3.2:79987168-79987187	None:intergenic	40.0%
	TAAGAACTGCGACTTCCAAA+TGG	+	chr3.2:79985946-79985965	MS.gene06433:CDS	40.0%
!	AACAAGGGAAAGCATAGCAT+CGG	+	chr3.2:79987231-79987250	MS.gene06433:CDS	40.0%
!	AGGATAATGGTTTCACCTGA+TGG	-	chr3.2:79986978-79986997	None:intergenic	40.0%
!	CTTAAGTTTGCTCAGTACAC+TGG	+	chr3.2:79986847-79986866	MS.gene06433:CDS	40.0%
!	CTTTTATAGAGAACCCGAAG+AGG	+	chr3.2:79987476-79987495	MS.gene06433:CDS	40.0%
!	TTTTAGGCTCTGTTTGGTAG+CGG	+	chr3.2:79986251-79986270	MS.gene06433:intron	40.0%
!!	AACGGTTTTTAGGCTCTGTT+TGG	+	chr3.2:79986245-79986264	MS.gene06433:intron	40.0%
!!	ATGCTTTCCCTTGTTGTTAG+CGG	-	chr3.2:79987226-79987245	None:intergenic	40.0%
!!	CTTCTTTTTGAGAGAGCTGA+CGG	-	chr3.2:79985883-79985902	None:intergenic	40.0%
!!	TTCTTTTTGAGAGAGCTGAC+GGG	-	chr3.2:79985882-79985901	None:intergenic	40.0%
!!!	ATAGCATCGGTTGTCTCTTT+TGG	+	chr3.2:79987244-79987263	MS.gene06433:CDS	40.0%
	ACTGGAGCTAATGCTATTGC+AGG	+	chr3.2:79986865-79986884	MS.gene06433:CDS	45.0%
	AGAAACTTCAACTAGCTGCC+AGG	+	chr3.2:79986752-79986771	MS.gene06433:CDS	45.0%
	AGCTGACATCCAGATGATGT+TGG	+	chr3.2:79985901-79985920	MS.gene06433:CDS	45.0%
	AGGTCTTAAGTGGGATGTGA+TGG	+	chr3.2:79987311-79987330	MS.gene06433:CDS	45.0%
	ATCACATCCCACTTAAGACC+TGG	-	chr3.2:79987312-79987331	None:intergenic	45.0%
	CACAGATTCAATTCCAGGAG+TGG	-	chr3.2:79988014-79988033	None:intergenic	45.0%
	CGCAACACTATGGATCTGTT+TGG	-	chr3.2:79986507-79986526	None:intergenic	45.0%
	CTGACGGGATGAAAGTTGTT+CGG	-	chr3.2:79985867-79985886	None:intergenic	45.0%
	GAAACTTCAACTAGCTGCCA+GGG	+	chr3.2:79986753-79986772	MS.gene06433:CDS	45.0%
	GACACAGTGCTGTGTAAAGA+AGG	-	chr3.2:79987418-79987437	None:intergenic	45.0%
	GCTGTCACAGATTCAATTCC+AGG	-	chr3.2:79988019-79988038	None:intergenic	45.0%
	GGAATTCCCGCTAACAACAA+GGG	+	chr3.2:79987216-79987235	MS.gene06433:CDS	45.0%
	GTTCAATCTGCAAGGCCTTA+TGG	+	chr3.2:79986811-79986830	MS.gene06433:CDS	45.0%
	TATTCGCCCAGGTCTTAAGT+GGG	+	chr3.2:79987302-79987321	MS.gene06433:CDS	45.0%
	TCACATCCCACTTAAGACCT+GGG	-	chr3.2:79987311-79987330	None:intergenic	45.0%
	TGATCCTAGAACTGACCATC+AGG	+	chr3.2:79986960-79986979	MS.gene06433:CDS	45.0%
	TGGAATTCCCGCTAACAACA+AGG	+	chr3.2:79987215-79987234	MS.gene06433:CDS	45.0%
	TGTTTGTTTGCAGCCCATCA+AGG	+	chr3.2:79987122-79987141	MS.gene06433:intron	45.0%
	TTCACCTGATGGTCAGTTCT+AGG	-	chr3.2:79986967-79986986	None:intergenic	45.0%
!	ACCAGCATTGAAGTCAGCAA+TGG	-	chr3.2:79987544-79987563	None:intergenic	45.0%
!	GCAATGGCATAATCTAGAGC+AGG	-	chr3.2:79987528-79987547	None:intergenic	45.0%
!!	ATTGCTGACTTCAATGCTGG+TGG	+	chr3.2:79987543-79987562	MS.gene06433:CDS	45.0%
!!	TGCTTTCCCTTGTTGTTAGC+GGG	-	chr3.2:79987225-79987244	None:intergenic	45.0%
!!!	CATTTTGTGCTGGCTCTGTT+TGG	+	chr3.2:79986212-79986231	MS.gene06433:intron	45.0%
!!!	CGGTTGTCTCTTTTGGCTTT+TGG	+	chr3.2:79987251-79987270	MS.gene06433:CDS	45.0%
!!!	CTTTTGGCTTTTGGCTAGGA+TGG	+	chr3.2:79987260-79987279	MS.gene06433:CDS	45.0%
!!!	GTCTCTTTTGGCTTTTGGCT+AGG	+	chr3.2:79987256-79987275	MS.gene06433:CDS	45.0%
	AATCTGTGACAGCAACTGGC+TGG	+	chr3.2:79988026-79988045	MS.gene06433:CDS	50.0%
	AATGCTGGTGGTCCATCTGA+TGG	+	chr3.2:79987555-79987574	MS.gene06433:CDS	50.0%
	AGAACGGCTCTCTGTCCATA+AGG	-	chr3.2:79986829-79986848	None:intergenic	50.0%
	ATCTGTGACAGCAACTGGCT+GGG	+	chr3.2:79988027-79988046	MS.gene06433:CDS	50.0%
	ATTGCAGGTAGACACACTCC+TGG	+	chr3.2:79986880-79986899	MS.gene06433:CDS	50.0%
	CATCAGCAGCCAACATCATC+TGG	-	chr3.2:79985913-79985932	None:intergenic	50.0%
	CATGGCTGCTCAATTGCAGT+AGG	-	chr3.2:79987588-79987607	None:intergenic	50.0%
	CCAAGAGCAGCTTCCTTGAT+GGG	-	chr3.2:79987138-79987157	None:intergenic	50.0%
	CTACTGCAATTGAGCAGCCA+TGG	+	chr3.2:79987586-79987605	MS.gene06433:CDS	50.0%
	CTATTCGCCCAGGTCTTAAG+TGG	+	chr3.2:79987301-79987320	MS.gene06433:CDS	50.0%
	TCAGTGAGGATGAGAAGACG+AGG	-	chr3.2:79986943-79986962	None:intergenic	50.0%
	TCCAAGAGCAGCTTCCTTGA+TGG	-	chr3.2:79987139-79987158	None:intergenic	50.0%
	TCTTTCAGTTGCAGGGGACT+GGG	+	chr3.2:79987958-79987977	MS.gene06433:intron	50.0%
	TTCATCCTCCTCTTGCTCCT+TGG	-	chr3.2:79987502-79987521	None:intergenic	50.0%
	TTCTTTCAGTTGCAGGGGAC+TGG	+	chr3.2:79987957-79987976	MS.gene06433:intron	50.0%
!!	AGGATGGTTTTGCAGATGCG+TGG	+	chr3.2:79987276-79987295	MS.gene06433:CDS	50.0%
!!	CCAGGAGTGGGAATTTGTTG+CGG	-	chr3.2:79988001-79988020	None:intergenic	50.0%
!!	GCCATTGCTGACTTCAATGC+TGG	+	chr3.2:79987540-79987559	MS.gene06433:CDS	50.0%
!!	GGTCAGTTCTAGGATCAGTG+AGG	-	chr3.2:79986957-79986976	None:intergenic	50.0%
	ACACCAGGAGCTGCTGGAAT+AGG	-	chr3.2:79987630-79987649	None:intergenic	55.0%
	AGTCGCAGTTCTTAGTGCCG+AGG	-	chr3.2:79985940-79985959	None:intergenic	55.0%
	ATGCGTGGTACTATTCGCCC+AGG	+	chr3.2:79987291-79987310	MS.gene06433:CDS	55.0%
	CCCATCAAGGAAGCTGCTCT+TGG	+	chr3.2:79987135-79987154	MS.gene06433:CDS	55.0%
	CCGCAACAAATTCCCACTCC+TGG	+	chr3.2:79987998-79988017	MS.gene06433:CDS	55.0%
	CTCGATTGCAACGATGACCC+TGG	-	chr3.2:79986773-79986792	None:intergenic	55.0%
	CTCTTGCTCCTTGGCCTCTT+CGG	-	chr3.2:79987493-79987512	None:intergenic	55.0%
	CTTTCAGTTGCAGGGGACTG+GGG	+	chr3.2:79987959-79987978	MS.gene06433:intron	55.0%
	GAGAAGACGAGGCTCACTGA+AGG	-	chr3.2:79986932-79986951	None:intergenic	55.0%
	GTAGGCCACTGACCATCAGA+TGG	-	chr3.2:79987570-79987589	None:intergenic	55.0%
	GTGGTCCATCTGATGGTCAG+TGG	+	chr3.2:79987562-79987581	MS.gene06433:CDS	55.0%
	TAGAGAACCCGAAGAGGCCA+AGG	+	chr3.2:79987482-79987501	MS.gene06433:CDS	55.0%
	TCTTGCTCCTTGGCCTCTTC+GGG	-	chr3.2:79987492-79987511	None:intergenic	55.0%
	TGCTTCAAACGCCGCAACGA+TGG	+	chr3.2:79985977-79985996	MS.gene06433:CDS	55.0%
	TTGGCTGCTGATGTCCACCT+CGG	+	chr3.2:79985920-79985939	MS.gene06433:CDS	55.0%
!	AGCAGCTCCTGGTGTCAACT+GGG	+	chr3.2:79987635-79987654	MS.gene06433:CDS	55.0%
!!	GGAGTGGGAATTTGTTGCGG+TGG	-	chr3.2:79987998-79988017	None:intergenic	55.0%
!!	GTGGGAATTTGTTGCGGTGG+TGG	-	chr3.2:79987995-79988014	None:intergenic	55.0%
!!	TGTGGTGCTGCATCAGTCCA+TGG	-	chr3.2:79987606-79987625	None:intergenic	55.0%
	AGAGGCCAAGGAGCAAGAGG+AGG	+	chr3.2:79987494-79987513	MS.gene06433:CDS	60.0%
	CAGCCTATTCCAGCAGCTCC+TGG	+	chr3.2:79987624-79987643	MS.gene06433:CDS	60.0%
	CAGTTGACACCAGGAGCTGC+TGG	-	chr3.2:79987636-79987655	None:intergenic	60.0%
	CGAAGAGGCCAAGGAGCAAG+AGG	+	chr3.2:79987491-79987510	MS.gene06433:CDS	60.0%
	CGTTGCAATCGAGAACCCCC+AGG	+	chr3.2:79986780-79986799	MS.gene06433:CDS	60.0%
	GGAGCTGCTGGAATAGGCTG+TGG	-	chr3.2:79987624-79987643	None:intergenic	60.0%
!	CAGCAGCTCCTGGTGTCAAC+TGG	+	chr3.2:79987634-79987653	MS.gene06433:CDS	60.0%
!	CGCAGTTCTTAGTGCCGAGG+TGG	-	chr3.2:79985937-79985956	None:intergenic	60.0%
	AACTGGGCTGCCCCAGAAGC+TGG	+	chr3.2:79987651-79987670	MS.gene06433:CDS	65.0%
	GGGGCAGCCCAGTTGACACC+AGG	-	chr3.2:79987645-79987664	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	79985857	79988054	79985857	ID=MS.gene06433
chr3.2	mRNA	79985857	79988054	79985857	ID=MS.gene06433.t1;Parent=MS.gene06433
chr3.2	exon	79985857	79985998	79985857	ID=MS.gene06433.t1.exon1;Parent=MS.gene06433.t1
chr3.2	CDS	79985857	79985998	79985857	ID=cds.MS.gene06433.t1;Parent=MS.gene06433.t1
chr3.2	exon	79986719	79986981	79986719	ID=MS.gene06433.t1.exon2;Parent=MS.gene06433.t1
chr3.2	CDS	79986719	79986981	79986719	ID=cds.MS.gene06433.t1;Parent=MS.gene06433.t1
chr3.2	exon	79987135	79987332	79987135	ID=MS.gene06433.t1.exon3;Parent=MS.gene06433.t1
chr3.2	CDS	79987135	79987332	79987135	ID=cds.MS.gene06433.t1;Parent=MS.gene06433.t1
chr3.2	exon	79987465	79987672	79987465	ID=MS.gene06433.t1.exon4;Parent=MS.gene06433.t1
chr3.2	CDS	79987465	79987672	79987465	ID=cds.MS.gene06433.t1;Parent=MS.gene06433.t1
chr3.2	exon	79987966	79988054	79987966	ID=MS.gene06433.t1.exon5;Parent=MS.gene06433.t1
chr3.2	CDS	79987966	79988054	79987966	ID=cds.MS.gene06433.t1;Parent=MS.gene06433.t1

Gene Sequence

>MS.gene06433

ATGGCTACCGAACAACTTTCATCCCGTCAGCTCTCTCAAAAAGAAGCTGACATCCAGATGATGTTGGCTGCTGATGTCCACCTCGGCACTAAGAACTGCGACTTCCAAATGGAACGTTATTGCTTCAAACGCCGCAACGATGGTAACTTTCAAATCTCTACTATTTTTTTTTTATTTTTATATTTCATGAATATTAATAGCCTCTAGTATTGTGTTTCTTAATCTTATATATATTGAATTTGACATTTGATTGTTAAGAATCGAGATTAAGTGGATCTCATGTCATTTACTTTCGTTAACAATCTAGTTTATAGGATGATTAATTACAATTTTGGTTTCGATCAATGTTCACTTTCATTTTGTGCTGGCTCTGTTTGGAATTCTGCAAAACGGTTTTTAGGCTCTGTTTGGTAGCGGTTTACTAGCTGATTGAATTTGAATTTGTAGTGTTTAGTAAAATTGAGATAAAAGTGATTACCTATAAGCTTTAACCTATAAAAAAGTGTAGCATTGGTTAACTATCAAAAATTGTTATATGCTCATTAAAATAGCTATAAGCTCATGAGAAAATGACAGTTACTAGACAAGCTTTATTCAGTCATACAAGCTTATAAGCTTATAAGCCATTAGCTTAAATATGAGTTTTACCAAACAGATCCATAGTGTTGCGTTTTGTTTTGTTTGTTTTACGGATAAGTTTGTCTTAAAAAATCAATTTTGCCCAATTAAGTTACACCTTGTGTTTGGGTTCCTTGATTATATCATCATTACAATCTTCTTTGCTTATACAAAATTATTCTGTTGCAAATGTTCAGTAGACTAAATATGGATTTTTGATTGTTTGTTTTTTGTTTTAATTTAGGTATTTATATCATTAATCTTGGAAAAACTTGGGAGAAACTTCAACTAGCTGCCAGGGTCATCGTTGCAATCGAGAACCCCCAGGACATTATTGTTCAATCTGCAAGGCCTTATGGACAGAGAGCCGTTCTTAAGTTTGCTCAGTACACTGGAGCTAATGCTATTGCAGGTAGACACACTCCTGGAACCTTTACCAATCAAATGCAAGTTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACTGATCCTAGAACTGACCATCAGGTGAAACCATTATCCTTGACATGTTTGCTTGTTAATATCAATTATGGCTATATTTTTTGTTGTTTTAGGCTTATATATTTCCTTTATTGGTTGATATTTGTGCATTTCGCTTTTATAAGGTTTTGATTTTTGCTTTGTCTTGTTTGTTTGCAGCCCATCAAGGAAGCTGCTCTTGGAAATATTCCAACTATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGAAAGCATAGCATCGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCAGGTCTTAAGTGGGATGTGATGGTAAACTATTTTTGATTTTATGTATCGTAATTGTTGAGAGTATTTGCAGTCTTCTGTTAATATCAGAAAGCTTAACTGTGTCCCTTCTTTACACAGCACTGTGTCCATTGTCTAATGTTTTTCTTAATGCAGGTTGATCTATTCTTTTATAGAGAACCCGAAGAGGCCAAGGAGCAAGAGGAGGATGAAGTTCCTGCTCTAGATTATGCCATTGCTGACTTCAATGCTGGTGGTCCATCTGATGGTCAGTGGCCTACTGCAATTGAGCAGCCATGGACTGATGCAGCACCACAGCCTATTCCAGCAGCTCCTGGTGTCAACTGGGCTGCCCCAGAAGCTGGTAAAGAACATTTTTTTTTTTTAATCTTTTTGAATTCCTAACCTAAACTCAAGATTTTTTGGCATTTCTCTTCGACTTTAATTTGGGTTGTCCCTTTGATCTTCAATTTGTTTTAGTGCCGTTATTGTCATCTTTTAAAATGATTTTTTACTCTCCCAAGACATCATTACTACACTCATTAATTCTCTATTTAAAATTTGTTGCGATCAAAATTGATGCAGCATATGATGTTGAGTTAATTTTTTCAGCACCATGTATTCATTTTTTTTTATTAATTTAGTGTATTCTTTCAGTTGCAGGGGACTGGGGTGAAGCTGTACCACCACCGCAACAAATTCCCACTCCTGGAATTGAATCTGTGACAGCAACTGGCTGGGATTAA

Protein sequence

>MS.gene06433.t1

MATEQLSSRQLSQKEADIQMMLAADVHLGTKNCDFQMERYCFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPALDYAIADFNAGGPSDGQWPTAIEQPWTDAAPQPIPAAPGVNWAAPEAVAGDWGEAVPPPQQIPTPGIESVTATGWD