AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23040.t1 MTR_7g107400 98.990 297 3 0 1 297 1 297 0.0 606
MS.gene23040.t1 MTR_3g095810 92.542 295 20 2 3 297 7 299 0.0 517
MS.gene23040.t1 MTR_3g095810 92.203 295 19 2 3 297 7 297 0.0 514
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23040.t1 AT3G04770 75.627 279 49 6 3 271 9 278 4.58e-148 417
MS.gene23040.t1 AT1G72370 79.283 251 39 3 2 240 7 256 1.20e-145 411
MS.gene23040.t1 AT1G72370 79.283 251 39 3 2 240 7 256 1.64e-145 411
MS.gene23040.t1 AT3G04770 88.384 198 23 0 2 199 8 205 1.84e-131 377

Find 97 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGATTTATATTATAAATC+TGG 0.244718 7.2:-7082784 MS.gene23040:CDS
CTCAAATTTGCTCAGTATAC+TGG 0.267475 7.2:-7082654 MS.gene23040:CDS
ATCGATCAAGTACCAGCTTC+TGG 0.282672 7.2:+7081135 None:intergenic
CCAAGAGCAGCTTCCTTGAT+TGG 0.286416 7.2:+7081673 None:intergenic
GTTCAATCTGCTAGACCTTA+TGG 0.290724 7.2:-7082690 MS.gene23040:CDS
TGCTTGCCCTTGTTGTTGGC+AGG 0.316997 7.2:+7081586 None:intergenic
CAGCAGTTCCTGCTGTCAAC+TGG 0.338422 7.2:-7081164 MS.gene23040:CDS
TCTTGCTCCTTTGCCTCCTC+AGG 0.364214 7.2:+7081312 None:intergenic
ACTGTGCTTGCCCTTGTTGT+TGG 0.371019 7.2:+7081582 None:intergenic
ACAGTATAGGATGTCTGTTT+TGG 0.375538 7.2:-7081564 MS.gene23040:CDS
GAACTGCATCATTCCATGTT+TGG 0.376849 7.2:+7081199 None:intergenic
CAGGAGCAGGTATTTGTTGT+GGG 0.383724 7.2:+7080786 None:intergenic
GAAACCTGATGATCAGTTCT+TGG 0.383788 7.2:+7082537 None:intergenic
GGGATTTATATTATAAATCT+GGG 0.401340 7.2:-7082783 MS.gene23040:CDS
TTCCCAGCCAGTTGCTTGGA+TGG 0.405766 7.2:+7080754 None:intergenic
CATCGGCGGCAAGCATCATC+TGG 0.408335 7.2:+7082975 None:intergenic
ACTGGTGCCAATGCTATTGC+TGG 0.409723 7.2:-7082636 MS.gene23040:CDS
AGCAGGCCATTGTCCATCAT+TGG 0.409891 7.2:+7081230 None:intergenic
ATCAGTGAGGATAAGAAGCC+TGG 0.410991 7.2:+7082560 None:intergenic
GCAGGCCATTGTCCATCATT+GGG 0.413746 7.2:+7081231 None:intergenic
CCAATCAAGGAAGCTGCTCT+TGG 0.415479 7.2:-7081673 MS.gene23040:CDS
TTACCATGACATCCCACTTA+AGG 0.419417 7.2:+7081494 None:intergenic
GCAGGTATTTGTTGTGGGGC+TGG 0.425106 7.2:+7080791 None:intergenic
TCGATCAAGTACCAGCTTCT+GGG 0.429103 7.2:+7081136 None:intergenic
ACAGCAGGAACTGCTGGAAT+AGG 0.430588 7.2:+7081171 None:intergenic
CTTATTCCCAGCCAGTTGCT+TGG 0.433981 7.2:+7080750 None:intergenic
CAGGTTCTCTATAAAAGAAC+AGG 0.436315 7.2:+7081331 None:intergenic
AAGTCAGCAATAGCATAATC+TGG 0.450138 7.2:+7081270 None:intergenic
GAATGAAACTTGCATCTGAT+TGG 0.451068 7.2:+7082590 None:intergenic
AGTCCATCCAAGCAACTGGC+TGG 0.454371 7.2:-7080757 MS.gene23040:CDS
CAGTTGACAGCAGGAACTGC+TGG 0.458194 7.2:+7081165 None:intergenic
AAAGCTTCAACTTGCTGCTC+GGG 0.459540 7.2:-7082748 MS.gene23040:CDS
TGATCCAAGAACTGATCATC+AGG 0.468742 7.2:-7082541 MS.gene23040:intron
CCATTCGCCCTGGCCTTAAG+TGG 0.476474 7.2:-7081507 MS.gene23040:CDS
GTTGAGTCCATCCAAGCAAC+TGG 0.477635 7.2:-7080761 MS.gene23040:CDS
GTATCACAGAAAGCAATTGT+TGG 0.479071 7.2:+7081643 None:intergenic
GCTATTGCTGACTTTAATGC+AGG 0.479468 7.2:-7081261 MS.gene23040:CDS
GAGTTGACGAGGGGCGGCCA+TGG 0.483920 7.2:+7083018 None:intergenic
AACTGGGCAGCCCCAGAAGC+TGG 0.486191 7.2:-7081147 MS.gene23040:intron
ATTGAACAATCATATCTTGT+GGG 0.493138 7.2:+7082706 None:intergenic
GCTTGGATGGACTCAACTCC+AGG 0.495466 7.2:+7080767 None:intergenic
GGAACTGCTGGAATAGGCTC+TGG 0.497641 7.2:+7081177 None:intergenic
GGGGCTGCCCAGTTGACAGC+AGG 0.498864 7.2:+7081156 None:intergenic
CCAGGAGCAGGTATTTGTTG+TGG 0.503860 7.2:+7080785 None:intergenic
AGCAGTTCCTGCTGTCAACT+GGG 0.509125 7.2:-7081163 MS.gene23040:CDS
TTGTCTTGCAGCTGCAGGGG+GGG 0.509610 7.2:-7080831 MS.gene23040:intron
CATGTTTGGTCGATAGCAGC+AGG 0.511174 7.2:+7081213 None:intergenic
CCACAACAAATACCTGCTCC+TGG 0.512625 7.2:-7080785 MS.gene23040:CDS
TGTTTGTGTGCAGCCAATCA+AGG 0.514122 7.2:-7081686 MS.gene23040:intron
ATGACATCCCACTTAAGGCC+AGG 0.514173 7.2:+7081499 None:intergenic
AGAACAGCTCTCTGTCCATA+AGG 0.514765 7.2:+7082675 None:intergenic
GCTTGCCCTTGTTGTTGGCA+GGG 0.514834 7.2:+7081587 None:intergenic
AAAAGCTTCAACTTGCTGCT+CGG 0.518884 7.2:-7082749 MS.gene23040:CDS
AGATTTGTCTTGCAGCTGCA+GGG 0.519344 7.2:-7080835 MS.gene23040:intron
GCAGGTTCTATCCCCAATGA+TGG 0.524423 7.2:-7081243 MS.gene23040:CDS
CCACTTAAGGCCAGGGCGAA+TGG 0.524759 7.2:+7081507 None:intergenic
GATTTGTCTTGCAGCTGCAG+GGG 0.527935 7.2:-7080834 MS.gene23040:intron
ATCTTCAAGCGCCGTAACGA+TGG 0.529765 7.2:-7082908 MS.gene23040:intron
TAGAGAACCTGAGGAGGCAA+AGG 0.541067 7.2:-7081319 MS.gene23040:CDS
GCAATAGCATAATCTGGTGC+AGG 0.543710 7.2:+7081276 None:intergenic
ATGGAATGTTACCATCGTTA+CGG 0.545997 7.2:+7082897 None:intergenic
AACAAGGGCAAGCACAGTAT+AGG 0.547955 7.2:-7081577 MS.gene23040:CDS
TGGCCTTAAGTGGGATGTCA+TGG 0.555571 7.2:-7081497 MS.gene23040:intron
CTGCTGCTATCGACCAAACA+TGG 0.557904 7.2:-7081212 MS.gene23040:CDS
ATTGCTGGGAGGCACACTCC+TGG 0.558204 7.2:-7082621 MS.gene23040:CDS
GATTGAACAATCATATCTTG+TGG 0.558514 7.2:+7082705 None:intergenic
TTTAGTACCGAGATGGACAT+CGG 0.561895 7.2:+7082958 None:intergenic
CGATCAAGTACCAGCTTCTG+GGG 0.566204 7.2:+7081137 None:intergenic
CTGAGAGAGTTGACGAGGGG+CGG 0.567420 7.2:+7083012 None:intergenic
ATGGACTCAACTCCAGGAGC+AGG 0.568466 7.2:+7080773 None:intergenic
CCTATGCGATATGTCGACAT+TGG 0.570541 7.2:-7081613 MS.gene23040:CDS
ATGCGCGGAACCATTCGCCC+TGG 0.572935 7.2:-7081517 MS.gene23040:CDS
ATCTGATTGGTAAAAGTACC+AGG 0.573454 7.2:+7082603 None:intergenic
AAGTTTCATTCAGTGAGCCC+AGG 0.582162 7.2:-7082578 MS.gene23040:CDS
AGGAGCAGGTATTTGTTGTG+GGG 0.582996 7.2:+7080787 None:intergenic
ATTTGTCTTGCAGCTGCAGG+GGG 0.583953 7.2:-7080833 MS.gene23040:intron
TGAGGAGGCAAAGGAGCAAG+AGG 0.586597 7.2:-7081310 MS.gene23040:CDS
GTCCATCCAAGCAACTGGCT+GGG 0.586705 7.2:-7080756 MS.gene23040:CDS
TGGAATCCCTGCCAACAACA+AGG 0.586772 7.2:-7081593 MS.gene23040:CDS
CTTGCCGCCGATGTCCATCT+CGG 0.588724 7.2:-7082965 MS.gene23040:CDS
CTTTCTGAGAGAGTTGACGA+GGG 0.590646 7.2:+7083008 None:intergenic
GTGCCTCCCAGCAATAGCAT+TGG 0.594297 7.2:+7082629 None:intergenic
CTGGTGCCAATGCTATTGCT+GGG 0.611137 7.2:-7082635 MS.gene23040:CDS
TCAGTGAGGATAAGAAGCCT+GGG 0.611983 7.2:+7082561 None:intergenic
TGACATCCCACTTAAGGCCA+GGG 0.615254 7.2:+7081500 None:intergenic
CATTCGCCCTGGCCTTAAGT+GGG 0.617158 7.2:-7081506 MS.gene23040:CDS
TTTGTCTTGCAGCTGCAGGG+GGG 0.617734 7.2:-7080832 MS.gene23040:intron
GGAATCCCTGCCAACAACAA+GGG 0.619315 7.2:-7081592 MS.gene23040:CDS
TCTTTCTGAGAGAGTTGACG+AGG 0.626351 7.2:+7083007 None:intergenic
AGGATGGTGTTGCAGATGCG+CGG 0.653725 7.2:-7081532 MS.gene23040:CDS
TTTCTGAGAGAGTTGACGAG+GGG 0.657247 7.2:+7083009 None:intergenic
CTATCCCCAATGATGGACAA+TGG 0.660054 7.2:-7081236 MS.gene23040:CDS
CAGGCCATTGTCCATCATTG+GGG 0.668561 7.2:+7081232 None:intergenic
CCAATGTCGACATATCGCAT+AGG 0.669426 7.2:+7081613 None:intergenic
GTGCCAATGCTATTGCTGGG+AGG 0.711370 7.2:-7082632 MS.gene23040:CDS
GATCAGTTCTTGGATCAGTG+AGG 0.719669 7.2:+7082547 None:intergenic
AGTACCGAGATGGACATCGG+CGG 0.738432 7.2:+7082961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTTATTTATTTA+GGG - chr7.2:7080964-7080983 MS.gene23040:intron 0.0%
!! ATATTGTATTATAAGAAATT+TGG - chr7.2:7082039-7082058 MS.gene23040:intron 10.0%
!!! ATTAATTTTTTACTACATTT+TGG + chr7.2:7080924-7080943 None:intergenic 10.0%
!!! CTTTATTTTATATTCTATTA+TGG + chr7.2:7081516-7081535 None:intergenic 10.0%
!! ATATTATTAAAACAGCTTAT+AGG + chr7.2:7081869-7081888 None:intergenic 15.0%
!! TGTATATATATATGAATATG+CGG + chr7.2:7081465-7081484 None:intergenic 15.0%
!!! AAGTTTTTTTATTTTAGCTT+TGG - chr7.2:7081391-7081410 MS.gene23040:intron 15.0%
!!! ACTATTTTTTCTTTTTGTAA+CGG - chr7.2:7082296-7082315 MS.gene23040:intron 15.0%
!!! TGTTTTAATAATATATTGTG+TGG - chr7.2:7081875-7081894 MS.gene23040:intron 15.0%
!!! TTGTTTTTTTATGTTATTGT+GGG - chr7.2:7081564-7081583 MS.gene23040:CDS 15.0%
!! AAGTTAACGAAATAAATGTT+GGG + chr7.2:7082815-7082834 None:intergenic 20.0%
!! AGGGATTTATATTATAAATC+TGG - chr7.2:7080983-7081002 MS.gene23040:intron 20.0%
!! ATTAAGATGTTTATCCAAAA+AGG + chr7.2:7081744-7081763 None:intergenic 20.0%
!! GGGATTTATATTATAAATCT+GGG - chr7.2:7080984-7081003 MS.gene23040:intron 20.0%
!! GTAATAATAAGTGCTTATAT+AGG + chr7.2:7081798-7081817 None:intergenic 20.0%
!! TAACATGTTTATCCAAAATT+GGG + chr7.2:7081417-7081436 None:intergenic 20.0%
!! TTAAGATGTTTATCCAAAAA+GGG + chr7.2:7081743-7081762 None:intergenic 20.0%
!!! GTTGTTTTTTTATGTTATTG+TGG - chr7.2:7081563-7081582 MS.gene23040:CDS 20.0%
!!! TGTTTTTTTATGTTATTGTG+GGG - chr7.2:7081565-7081584 MS.gene23040:CDS 20.0%
! AGTTAACGAAATAAATGTTG+GGG + chr7.2:7082814-7082833 None:intergenic 25.0%
! ATTGAACAATCATATCTTGT+GGG + chr7.2:7081064-7081083 None:intergenic 25.0%
! CAAGTTAACGAAATAAATGT+TGG + chr7.2:7082816-7082835 None:intergenic 25.0%
! CTAACATGTTTATCCAAAAT+TGG + chr7.2:7081418-7081437 None:intergenic 25.0%
! TATAAATCTGGGAAAAACAT+GGG - chr7.2:7080995-7081014 MS.gene23040:intron 25.0%
! TGGTGAAATTGGATAATTTA+GGG + chr7.2:7080904-7080923 None:intergenic 25.0%
! TTATAAATCTGGGAAAAACA+TGG - chr7.2:7080994-7081013 MS.gene23040:intron 25.0%
! TTGGTGAAATTGGATAATTT+AGG + chr7.2:7080905-7080924 None:intergenic 25.0%
!! AAATTGGATAATTTAGGGTT+TGG + chr7.2:7080899-7080918 None:intergenic 25.0%
!! ATAATTTAGGGTTTGGAAAA+TGG + chr7.2:7080892-7080911 None:intergenic 25.0%
!! TCTCTATTTAAGATTTGTCA+GGG - chr7.2:7082841-7082860 MS.gene23040:intron 25.0%
!! TTCTCTATTTAAGATTTGTC+AGG - chr7.2:7082840-7082859 MS.gene23040:intron 25.0%
!!! GATTCATTGTTTTATGTGTA+GGG - chr7.2:7081285-7081304 MS.gene23040:CDS 25.0%
!!! TGATTCATTGTTTTATGTGT+AGG - chr7.2:7081284-7081303 MS.gene23040:CDS 25.0%
!!! TTACTACATTTTGGTGAAAT+TGG + chr7.2:7080915-7080934 None:intergenic 25.0%
AAACTTTGCACAAAAACCAA+TGG + chr7.2:7081704-7081723 None:intergenic 30.0%
AACTTTGCACAAAAACCAAT+GGG + chr7.2:7081703-7081722 None:intergenic 30.0%
AAGTGCTTATATAGGATATG+AGG + chr7.2:7081790-7081809 None:intergenic 30.0%
AATATATTGTGTGGAGCTTA+TGG - chr7.2:7081884-7081903 MS.gene23040:intron 30.0%
GATTGAACAATCATATCTTG+TGG + chr7.2:7081065-7081084 None:intergenic 30.0%
TTGATCAAGTCTATTGTCTT+GGG - chr7.2:7082393-7082412 MS.gene23040:intron 30.0%
TTTGATCAAGTCTATTGTCT+TGG - chr7.2:7082392-7082411 MS.gene23040:intron 30.0%
! CTCTATTTAAGATTTGTCAG+GGG - chr7.2:7082842-7082861 MS.gene23040:intron 30.0%
!!! ATTTTAGCTTGAACCCTTTT+TGG - chr7.2:7081727-7081746 MS.gene23040:intron 30.0%
AAGCACTTGTAAACCAACTT+GGG + chr7.2:7081951-7081970 None:intergenic 35.0%
AAGCACTTGTAAGTCTGTTT+GGG + chr7.2:7081641-7081660 None:intergenic 35.0%
AAGCAGACAATCTGGTTATT+AGG + chr7.2:7082004-7082023 None:intergenic 35.0%
AAGTCAGCAATAGCATAATC+TGG + chr7.2:7082500-7082519 None:intergenic 35.0%
AATTAGCAAATGCCAATGAC+AGG + chr7.2:7082775-7082794 None:intergenic 35.0%
ACTTTGCACAAAAACCAATG+GGG + chr7.2:7081702-7081721 None:intergenic 35.0%
ATGGAATGTTACCATCGTTA+CGG + chr7.2:7080873-7080892 None:intergenic 35.0%
ATTTCCTCTAATCCTGTCAT+TGG - chr7.2:7082760-7082779 MS.gene23040:CDS 35.0%
CAGGTTCTCTATAAAAGAAC+AGG + chr7.2:7082439-7082458 None:intergenic 35.0%
CGAGGAAAATCAATGTTGAA+GGG + chr7.2:7082705-7082724 None:intergenic 35.0%
CTGGTACTTGATCGATTATA+TGG - chr7.2:7082639-7082658 MS.gene23040:CDS 35.0%
GAATGAAACTTGCATCTGAT+TGG + chr7.2:7081180-7081199 None:intergenic 35.0%
GACAATCTGGTTATTAGGTT+TGG + chr7.2:7081999-7082018 None:intergenic 35.0%
GTATCACAGAAAGCAATTGT+TGG + chr7.2:7082127-7082146 None:intergenic 35.0%
TAAAAACTGCGACTTTCAGA+TGG - chr7.2:7080828-7080847 MS.gene23040:intron 35.0%
TAAGCACTTGTAAACCAACT+TGG + chr7.2:7081952-7081971 None:intergenic 35.0%
TAAGCACTTGTAAGTCTGTT+TGG + chr7.2:7081642-7081661 None:intergenic 35.0%
TCGAGGAAAATCAATGTTGA+AGG + chr7.2:7082706-7082725 None:intergenic 35.0%
! ACAGTATAGGATGTCTGTTT+TGG - chr7.2:7082203-7082222 MS.gene23040:intron 35.0%
! CAATGTGAAGTATCCATATG+TGG - chr7.2:7082338-7082357 MS.gene23040:intron 35.0%
! CTCAAATTTGCTCAGTATAC+TGG - chr7.2:7081113-7081132 MS.gene23040:intron 35.0%
! GTTCTTTTATAGAGAACCTG+AGG - chr7.2:7082439-7082458 MS.gene23040:intron 35.0%
!! ATCTGATTGGTAAAAGTACC+AGG + chr7.2:7081167-7081186 None:intergenic 35.0%
!!! TTTTAGCTTTGGCCCAATTT+TGG - chr7.2:7081402-7081421 MS.gene23040:intron 35.0%
AATGCCAATGACAGGATTAG+AGG + chr7.2:7082767-7082786 None:intergenic 40.0%
ACAGACAAAAGCAGACAATC+TGG + chr7.2:7082012-7082031 None:intergenic 40.0%
AGAGGAAATTTGAGAGATCG+AGG + chr7.2:7082749-7082768 None:intergenic 40.0%
ATCAAAGGTGAGAGATATCG+AGG + chr7.2:7082723-7082742 None:intergenic 40.0%
ATGTGGCAATTGTTTCCCAT+CGG - chr7.2:7082355-7082374 MS.gene23040:intron 40.0%
ATGTTATTGTGGGGAGCTTA+TGG - chr7.2:7081574-7081593 MS.gene23040:CDS 40.0%
CAAAAACCAATGGGGTTGTT+TGG + chr7.2:7081694-7081713 None:intergenic 40.0%
GAAACCTGATGATCAGTTCT+TGG + chr7.2:7081233-7081252 None:intergenic 40.0%
GAACTGCATCATTCCATGTT+TGG + chr7.2:7082571-7082590 None:intergenic 40.0%
GAGAGATCGAGGTAAATCAA+AGG + chr7.2:7082738-7082757 None:intergenic 40.0%
GTTCAATCTGCTAGACCTTA+TGG - chr7.2:7081077-7081096 MS.gene23040:intron 40.0%
TGATCCAAGAACTGATCATC+AGG - chr7.2:7081226-7081245 MS.gene23040:CDS 40.0%
TGGGAAACAATTGCCACATA+TGG + chr7.2:7082354-7082373 None:intergenic 40.0%
TTACCATGACATCCCACTTA+AGG + chr7.2:7082276-7082295 None:intergenic 40.0%
! CTTTTATAGAGAACCTGAGG+AGG - chr7.2:7082442-7082461 MS.gene23040:intron 40.0%
! TCTTGGGTTTTCTTTGATGC+AGG - chr7.2:7082409-7082428 MS.gene23040:intron 40.0%
! TTGTTTCCCATCGGTTGAAT+TGG - chr7.2:7082364-7082383 MS.gene23040:intron 40.0%
! TTTAGTACCGAGATGGACAT+CGG + chr7.2:7080812-7080831 None:intergenic 40.0%
!! AAAAGCTTCAACTTGCTGCT+CGG - chr7.2:7081018-7081037 MS.gene23040:intron 40.0%
!! GCTATTGCTGACTTTAATGC+AGG - chr7.2:7082506-7082525 MS.gene23040:intron 40.0%
!!! AGGATGTCTGTTTTGGCTTT+TGG - chr7.2:7082210-7082229 MS.gene23040:intron 40.0%
AAACCTGCCAATTCAACCGA+TGG + chr7.2:7082374-7082393 None:intergenic 45.0%
AACAAGGGCAAGCACAGTAT+AGG - chr7.2:7082190-7082209 MS.gene23040:intron 45.0%
AACCTGCCAATTCAACCGAT+GGG + chr7.2:7082373-7082392 None:intergenic 45.0%
AAGTTTCATTCAGTGAGCCC+AGG - chr7.2:7081189-7081208 MS.gene23040:CDS 45.0%
AGAACAGCTCTCTGTCCATA+AGG + chr7.2:7081095-7081114 None:intergenic 45.0%
AGATTTGTCTTGCAGCTGCA+GGG - chr7.2:7082932-7082951 MS.gene23040:CDS 45.0%
ATCAGTGAGGATAAGAAGCC+TGG + chr7.2:7081210-7081229 None:intergenic 45.0%
ATCGATCAAGTACCAGCTTC+TGG + chr7.2:7082635-7082654 None:intergenic 45.0%
CCAATGTCGACATATCGCAT+AGG + chr7.2:7082157-7082176 None:intergenic 45.0%
CCTATGCGATATGTCGACAT+TGG - chr7.2:7082154-7082173 MS.gene23040:intron 45.0%
CTTGTAAACCAACTTGGGAG+AGG + chr7.2:7081946-7081965 None:intergenic 45.0%
GATCAGTTCTTGGATCAGTG+AGG + chr7.2:7081223-7081242 None:intergenic 45.0%
GCAATAGCATAATCTGGTGC+AGG + chr7.2:7082494-7082513 None:intergenic 45.0%
GTCAATCCAAACAACCCCAT+TGG - chr7.2:7081685-7081704 MS.gene23040:intron 45.0%
TAGATTTGTCTTGCAGCTGC+AGG - chr7.2:7082931-7082950 MS.gene23040:CDS 45.0%
TCAGTGAGGATAAGAAGCCT+GGG + chr7.2:7081209-7081228 None:intergenic 45.0%
TCGATCAAGTACCAGCTTCT+GGG + chr7.2:7082634-7082653 None:intergenic 45.0%
TGTTTGTGTGCAGCCAATCA+AGG - chr7.2:7082081-7082100 MS.gene23040:intron 45.0%
! CTTTCTGAGAGAGTTGACGA+GGG + chr7.2:7080762-7080781 None:intergenic 45.0%
! TCTTTCTGAGAGAGTTGACG+AGG + chr7.2:7080763-7080782 None:intergenic 45.0%
! TTTCTGAGAGAGTTGACGAG+GGG + chr7.2:7080761-7080780 None:intergenic 45.0%
!! AAAGCTTCAACTTGCTGCTC+GGG - chr7.2:7081019-7081038 MS.gene23040:intron 45.0%
!! AGGAGCAGGTATTTGTTGTG+GGG + chr7.2:7082983-7083002 None:intergenic 45.0%
!! CAGGAGCAGGTATTTGTTGT+GGG + chr7.2:7082984-7083003 None:intergenic 45.0%
!! CTATCCCCAATGATGGACAA+TGG - chr7.2:7082531-7082550 MS.gene23040:intron 45.0%
!!! CGCAGTTTTTAGTACCGAGA+TGG + chr7.2:7080819-7080838 None:intergenic 45.0%
!!! GTCTGTTTTGGCTTTTGGCT+AGG - chr7.2:7082215-7082234 MS.gene23040:intron 45.0%
!!! GTTTTGGCTTTTGGCTAGGA+TGG - chr7.2:7082219-7082238 MS.gene23040:intron 45.0%
!! GTTTATTTATTTATTTATTT+AGG - chr7.2:7080963-7080982 MS.gene23040:intron 5.0%
ACAGCAGGAACTGCTGGAAT+AGG + chr7.2:7082599-7082618 None:intergenic 50.0%
AGCAGGCCATTGTCCATCAT+TGG + chr7.2:7082540-7082559 None:intergenic 50.0%
AGCAGTTCCTGCTGTCAACT+GGG - chr7.2:7082604-7082623 MS.gene23040:CDS 50.0%
ATGACATCCCACTTAAGGCC+AGG + chr7.2:7082271-7082290 None:intergenic 50.0%
ATTTGTCTTGCAGCTGCAGG+GGG - chr7.2:7082934-7082953 MS.gene23040:CDS 50.0%
CAGGCCATTGTCCATCATTG+GGG + chr7.2:7082538-7082557 None:intergenic 50.0%
CATGTTTGGTCGATAGCAGC+AGG + chr7.2:7082557-7082576 None:intergenic 50.0%
CCAAGAGCAGCTTCCTTGAT+TGG + chr7.2:7082097-7082116 None:intergenic 50.0%
CCAATCAAGGAAGCTGCTCT+TGG - chr7.2:7082094-7082113 MS.gene23040:intron 50.0%
CCACAACAAATACCTGCTCC+TGG - chr7.2:7082982-7083001 MS.gene23040:CDS 50.0%
CGATCAAGTACCAGCTTCTG+GGG + chr7.2:7082633-7082652 None:intergenic 50.0%
CTGCTGCTATCGACCAAACA+TGG - chr7.2:7082555-7082574 MS.gene23040:CDS 50.0%
GATTTGTCTTGCAGCTGCAG+GGG - chr7.2:7082933-7082952 MS.gene23040:CDS 50.0%
GCAGGCCATTGTCCATCATT+GGG + chr7.2:7082539-7082558 None:intergenic 50.0%
GCAGGTTCTATCCCCAATGA+TGG - chr7.2:7082524-7082543 MS.gene23040:intron 50.0%
GGAATCCCTGCCAACAACAA+GGG - chr7.2:7082175-7082194 MS.gene23040:intron 50.0%
GTCTTAAGCCTCTCCCAAGT+TGG - chr7.2:7081935-7081954 MS.gene23040:intron 50.0%
GTTGAGTCCATCCAAGCAAC+TGG - chr7.2:7083006-7083025 MS.gene23040:CDS 50.0%
TAGAGAACCTGAGGAGGCAA+AGG - chr7.2:7082448-7082467 MS.gene23040:intron 50.0%
TGACATCCCACTTAAGGCCA+GGG + chr7.2:7082270-7082289 None:intergenic 50.0%
TGGAATCCCTGCCAACAACA+AGG - chr7.2:7082174-7082193 MS.gene23040:intron 50.0%
! ACTGGTGCCAATGCTATTGC+TGG - chr7.2:7081131-7081150 MS.gene23040:intron 50.0%
! ACTGTGCTTGCCCTTGTTGT+TGG + chr7.2:7082188-7082207 None:intergenic 50.0%
! ATCTTCAAGCGCCGTAACGA+TGG - chr7.2:7080859-7080878 MS.gene23040:intron 50.0%
! CCAGGAGCAGGTATTTGTTG+TGG + chr7.2:7082985-7083004 None:intergenic 50.0%
! CTGGTGCCAATGCTATTGCT+GGG - chr7.2:7081132-7081151 MS.gene23040:intron 50.0%
! TGGCCTTAAGTGGGATGTCA+TGG - chr7.2:7082270-7082289 MS.gene23040:intron 50.0%
! TTCCCATCGGTTGAATTGGC+AGG - chr7.2:7082368-7082387 MS.gene23040:intron 50.0%
AGTCCATCCAAGCAACTGGC+TGG - chr7.2:7083010-7083029 MS.gene23040:CDS 55.0%
ATGGACTCAACTCCAGGAGC+AGG + chr7.2:7082997-7083016 None:intergenic 55.0%
CAGCAGTTCCTGCTGTCAAC+TGG - chr7.2:7082603-7082622 MS.gene23040:CDS 55.0%
CAGTTGACAGCAGGAACTGC+TGG + chr7.2:7082605-7082624 None:intergenic 55.0%
GGAACTGCTGGAATAGGCTC+TGG + chr7.2:7082593-7082612 None:intergenic 55.0%
GTCCATCCAAGCAACTGGCT+GGG - chr7.2:7083011-7083030 MS.gene23040:CDS 55.0%
GTGCCAATGCTATTGCTGGG+AGG - chr7.2:7081135-7081154 MS.gene23040:intron 55.0%
GTGCCTCCCAGCAATAGCAT+TGG + chr7.2:7081141-7081160 None:intergenic 55.0%
TCTTGCTCCTTTGCCTCCTC+AGG + chr7.2:7082458-7082477 None:intergenic 55.0%
TGAGGAGGCAAAGGAGCAAG+AGG - chr7.2:7082457-7082476 MS.gene23040:intron 55.0%
TTCCCAGCCAGTTGCTTGGA+TGG + chr7.2:7083016-7083035 None:intergenic 55.0%
TTTGTCTTGCAGCTGCAGGG+GGG - chr7.2:7082935-7082954 MS.gene23040:CDS 55.0%
! AGTACCGAGATGGACATCGG+CGG + chr7.2:7080809-7080828 None:intergenic 55.0%
! GCTTGGATGGACTCAACTCC+AGG + chr7.2:7083003-7083022 None:intergenic 55.0%
!! AGGATGGTGTTGCAGATGCG+CGG - chr7.2:7082235-7082254 MS.gene23040:intron 55.0%
!! CATTCGCCCTGGCCTTAAGT+GGG - chr7.2:7082261-7082280 MS.gene23040:intron 55.0%
!! GCAGGTATTTGTTGTGGGGC+TGG + chr7.2:7082979-7082998 None:intergenic 55.0%
!! GCTTGCCCTTGTTGTTGGCA+GGG + chr7.2:7082183-7082202 None:intergenic 55.0%
!! TGCTTGCCCTTGTTGTTGGC+AGG + chr7.2:7082184-7082203 None:intergenic 55.0%
CATCGGCGGCAAGCATCATC+TGG + chr7.2:7080795-7080814 None:intergenic 60.0%
CCACTTAAGGCCAGGGCGAA+TGG + chr7.2:7082263-7082282 None:intergenic 60.0%
CTGAGAGAGTTGACGAGGGG+CGG + chr7.2:7080758-7080777 None:intergenic 60.0%
CTTGCCGCCGATGTCCATCT+CGG - chr7.2:7080802-7080821 MS.gene23040:CDS 60.0%
TTGTCTTGCAGCTGCAGGGG+GGG - chr7.2:7082936-7082955 MS.gene23040:CDS 60.0%
! ATTGCTGGGAGGCACACTCC+TGG - chr7.2:7081146-7081165 MS.gene23040:intron 60.0%
!! CCATTCGCCCTGGCCTTAAG+TGG - chr7.2:7082260-7082279 MS.gene23040:intron 60.0%
AACTGGGCAGCCCCAGAAGC+TGG - chr7.2:7082620-7082639 MS.gene23040:CDS 65.0%
ATGCGCGGAACCATTCGCCC+TGG - chr7.2:7082250-7082269 MS.gene23040:intron 65.0%
TGCAGCTGCAGGGGGGGATT+GGG - chr7.2:7082942-7082961 MS.gene23040:CDS 65.0%
TTGCAGCTGCAGGGGGGGAT+TGG - chr7.2:7082941-7082960 MS.gene23040:CDS 65.0%
GCAGCTGCAGGGGGGGATTG+GGG - chr7.2:7082943-7082962 MS.gene23040:CDS 70.0%
GGGGCTGCCCAGTTGACAGC+AGG + chr7.2:7082614-7082633 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7080751 7083038 7080751 ID=MS.gene23040
chr7.2 mRNA 7080751 7083038 7080751 ID=MS.gene23040.t1;Parent=MS.gene23040
chr7.2 exon 7082909 7083038 7082909 ID=MS.gene23040.t1.exon1;Parent=MS.gene23040.t1
chr7.2 CDS 7082909 7083038 7082909 ID=cds.MS.gene23040.t1;Parent=MS.gene23040.t1
chr7.2 exon 7082542 7082804 7082542 ID=MS.gene23040.t1.exon2;Parent=MS.gene23040.t1
chr7.2 CDS 7082542 7082804 7082542 ID=cds.MS.gene23040.t1;Parent=MS.gene23040.t1
chr7.2 exon 7081498 7081695 7081498 ID=MS.gene23040.t1.exon3;Parent=MS.gene23040.t1
chr7.2 CDS 7081498 7081695 7081498 ID=cds.MS.gene23040.t1;Parent=MS.gene23040.t1
chr7.2 exon 7081148 7081358 7081148 ID=MS.gene23040.t1.exon4;Parent=MS.gene23040.t1
chr7.2 CDS 7081148 7081358 7081148 ID=cds.MS.gene23040.t1;Parent=MS.gene23040.t1
chr7.2 exon 7080751 7080842 7080751 ID=MS.gene23040.t1.exon5;Parent=MS.gene23040.t1
chr7.2 CDS 7080751 7080842 7080751 ID=cds.MS.gene23040.t1;Parent=MS.gene23040.t1
Gene Sequence

>MS.gene23040

ATGGCCGCCCCTCGTCAACTCTCTCAGAAAGAAGCTGATATCCAGATGATGCTTGCCGCCGATGTCCATCTCGGTACTAAAAACTGCGACTTTCAGATGGAAAGATACATCTTCAAGCGCCGTAACGATGGTAACATTCCATTTTCCAAACCCTAAATTATCCAATTTCACCAAAATGTAGTAAAAAATTAATCTTTTTTATGTGTGCATTTGTTTATTTATTTATTTATTTAGGGATTTATATTATAAATCTGGGAAAAACATGGGAAAAGCTTCAACTTGCTGCTCGGGTAATTGTTGCAATTGAAAACCCACAAGATATGATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCCAATGCTATTGCTGGGAGGCACACTCCTGGTACTTTTACCAATCAGATGCAAGTTTCATTCAGTGAGCCCAGGCTTCTTATCCTCACTGATCCAAGAACTGATCATCAGGTTTCACTCTTACACATTTTGTTATTTTATGCATACTGATTCATTGTTTTATGTGTAGGGTTTTTTTATTTTGTTTTAGATTTGTCTGTCGATATTACATGATAAATTTGTGTGATTGCATGTATTTTATATTGCTTTTTGTGAAGTTTTTTTATTTTAGCTTTGGCCCAATTTTGGATAAACATGTTAGTTTAATTTGCAGCTTATAGCATAACCGCATATTCATATATATATACATGCTCTTATTATACGCTATAAGCTATTTCCATAATAGAATATAAAATAAAGTCAAGACTATTTCATTATGAGCTATAAGTTGTTTTTTTATGTTATTGTGGGGAGCTTATGGAAATAAGCTGAAAACAGATTATGAGCATGTCTTAAGCTTCTCCCAAACAGACTTACAAGTGCTTATGACAATAGTTAAGCTCAAATAAGTCAATCCAAACAACCCCATTGGTTTTTGTGCAAAGTTTTTGATTTTAGCTTGAACCCTTTTTGGATAAACATCTTAATTTGATTTGCAGCTTATAGCATAACCTCATATCCTATATAAGCACTTATTATTACTATTTTCATAATAGAATATAAAATTAAGTTGAATTATTTCATTACGAGCCTATAAGCTGTTTTAATAATATATTGTGTGGAGCTTATGGAAATAAGCTGAAAACAGAATATGAACATGTCTTAAGCCTCTCCCAAGTTGGTTTACAAGTGCTTACGACATTAGTTTAGCTCAATTAAGCCAAACCTAATAACCAGATTGTCTGCTTTTGTCTGTCAATGTTATATTGTATTATAAGAAATTTGGTAAATTCTATTTATGTTTTTGTTTGTGTGCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCAACAATTGCTTTCTGTGATACTGATTCGCCTATGCGATATGTCGACATTGGAATCCCTGCCAACAACAAGGGCAAGCACAGTATAGGATGTCTGTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGCGGAACCATTCGCCCTGGCCTTAAGTGGGATGTCATGGTAAACTATTTTTTCTTTTTGTAACGGTTAGCGTATGTGTATTCTGCAATGTGAAGTATCCATATGTGGCAATTGTTTCCCATCGGTTGAATTGGCAGGTTTTGATCAAGTCTATTGTCTTGGGTTTTCTTTGATGCAGGTTGACCTGTTCTTTTATAGAGAACCTGAGGAGGCAAAGGAGCAAGAGGAAGATGATGTTCCTGCACCAGATTATGCTATTGCTGACTTTAATGCAGGTTCTATCCCCAATGATGGACAATGGCCTGCTGCTATCGACCAAACATGGAATGATGCAGTTCCAGAGCCTATTCCAGCAGTTCCTGCTGTCAACTGGGCAGCCCCAGAAGCTGGTACTTGATCGATTATATGGCGTTTTAAAAAAATTTAGACTAAACAAAAATTTAGAACATCCCTTCAACATTGATTTTCCTCGATATCTCTCACCTTTGATTTACCTCGATCTCTCAAATTTCCTCTAATCCTGTCATTGGCATTTGCTAATTTTGTTTTTACTTGCTACCCCAACATTTATTTCGTTAACTTGTGTATTCTCTATTTAAGATTTGTCAGGGGATAAAATTGATGTAGCATGTGTAATTGATTTAACTATTTTCAGAATGTATTCATGTTTTGTTGACATAGATTTGTCTTGCAGCTGCAGGGGGGGATTGGGGTGAAGCTGTTCCAGCCCCACAACAAATACCTGCTCCTGGAGTTGAGTCCATCCAAGCAACTGGCTGGGAATAA
Protein sequence

>MS.gene23040.t1

MAAPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDMIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDDVPAPDYAIADFNAGSIPNDGQWPAAIDQTWNDAVPEPIPAVPAVNWAAPEAAAGGDWGEAVPAPQQIPAPGVESIQATGWE