AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023546


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023546.t1 MTR_8g085980 100.000 449 0 0 1 449 1 449 0.0 936
MS.gene023546.t1 MTR_7g085800 94.989 439 22 0 1 439 1 439 0.0 857
MS.gene023546.t1 MTR_1g106005 91.111 450 39 1 1 449 1 450 0.0 840
MS.gene023546.t1 MTR_4g097830 92.711 439 32 0 1 439 1 439 0.0 839
MS.gene023546.t1 MTR_3g110720 92.922 438 31 0 1 438 1 438 0.0 838
MS.gene023546.t1 MTR_6g029190 87.333 450 54 2 1 449 1 448 0.0 799
MS.gene023546.t1 MTR_2g041670 71.659 434 118 2 1 434 1 429 0.0 632
MS.gene023546.t1 MTR_2g041400 71.795 429 116 2 1 429 1 424 0.0 623
MS.gene023546.t1 MTR_8g107250 41.425 449 252 3 1 449 1 438 1.80e-126 374
MS.gene023546.t1 MTR_4g094535 41.935 434 242 2 1 434 1 424 2.19e-126 374
MS.gene023546.t1 MTR_4g017630 41.705 434 243 2 1 434 1 424 4.33e-126 373
MS.gene023546.t1 MTR_4g019110 42.396 434 240 2 1 434 1 424 1.07e-125 372
MS.gene023546.t1 MTR_2g031310 41.935 434 242 2 1 434 1 424 1.09e-125 372
MS.gene023546.t1 MTR_4g019090 41.705 434 243 2 1 434 1 424 1.84e-125 372
MS.gene023546.t1 MTR_3g113970 40.553 434 250 1 1 434 1 426 7.68e-125 370
MS.gene023546.t1 MTR_1g101130 41.475 434 244 2 1 434 1 424 1.09e-124 370
MS.gene023546.t1 MTR_7g089120 41.475 434 244 3 1 434 1 424 1.37e-124 369
MS.gene023546.t1 MTR_8g098360 40.275 437 245 3 1 434 1 424 3.80e-124 368
MS.gene023546.t1 MTR_3g063410 90.260 154 15 0 252 405 24 177 2.33e-104 308
MS.gene023546.t1 MTR_3g063410 89.855 138 14 0 268 405 1 138 9.44e-91 272
MS.gene023546.t1 MTR_7g117050 30.562 445 288 8 2 433 3 439 9.06e-77 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023546.t1 AT5G19780 98.000 450 8 1 1 449 1 450 0.0 921
MS.gene023546.t1 AT5G19770 98.000 450 8 1 1 449 1 450 0.0 921
MS.gene023546.t1 AT1G64740 93.563 435 28 0 1 435 1 435 0.0 836
MS.gene023546.t1 AT1G04820 92.874 435 31 0 1 435 1 435 0.0 834
MS.gene023546.t1 AT1G50010 92.874 435 31 0 1 435 1 435 0.0 834
MS.gene023546.t1 AT4G14960 92.644 435 32 0 1 435 1 435 0.0 832
MS.gene023546.t1 AT4G14960 87.961 407 42 1 1 407 1 400 0.0 733
MS.gene023546.t1 AT1G75780 41.475 434 245 2 1 434 1 425 7.18e-128 378
MS.gene023546.t1 AT5G62700 41.935 434 242 2 1 434 1 424 2.03e-126 374
MS.gene023546.t1 AT5G62690 41.935 434 242 2 1 434 1 424 2.03e-126 374
MS.gene023546.t1 AT1G20010 41.244 434 246 2 1 434 1 425 2.05e-125 372
MS.gene023546.t1 AT2G29550 41.705 434 243 2 1 434 1 424 2.10e-125 372
MS.gene023546.t1 AT5G12250 41.475 434 244 3 1 434 1 424 2.93e-125 371
MS.gene023546.t1 AT4G20890 41.705 434 243 3 1 434 1 424 5.28e-125 370
MS.gene023546.t1 AT5G23860 41.475 434 244 2 1 434 1 424 1.16e-124 370
MS.gene023546.t1 AT5G23860 41.475 434 244 2 1 434 1 424 1.16e-124 370
MS.gene023546.t1 AT5G44340 41.705 434 243 3 1 434 1 424 2.57e-123 366
MS.gene023546.t1 AT5G05620 31.236 445 285 8 2 433 3 439 4.45e-78 251
MS.gene023546.t1 AT3G61650 30.519 462 295 9 2 445 3 456 6.26e-77 248

Find 128 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTCTTTCTGTTGATTA+TGG 0.176344 4.3:+14805616 MS.gene023546:CDS
AGGTTTGGGTTCACTTCTTT+TGG 0.254943 4.3:+14805594 MS.gene023546:CDS
GGTGGAACCGGTTCAGGTTT+GGG 0.262975 4.3:+14805580 MS.gene023546:CDS
CAGCCTCCTTCAGTTGTTCC+TGG 0.319747 4.3:+14806670 MS.gene023546:CDS
TTGCCGGAGATGAGTTGTTC+AGG 0.320827 4.3:-14805335 None:intergenic
AACACAGCATTGGTAATTTC+CGG 0.327913 4.3:-14806165 None:intergenic
TGGTGGAACCGGTTCAGGTT+TGG 0.328516 4.3:+14805579 MS.gene023546:CDS
AACACATTCTTCAGCGAAAC+TGG 0.328754 4.3:+14805218 MS.gene023546:CDS
TTTGGATCGTGTTAGGAAAT+TGG 0.329849 4.3:+14805507 MS.gene023546:CDS
GTTGGTGGTGGAACCGGTTC+AGG 0.343909 4.3:+14805574 MS.gene023546:CDS
ACCACCTCGTTGAGGTTTGA+TGG 0.345949 4.3:+14806015 MS.gene023546:CDS
ATCTGTGTTTGGATCGTGTT+AGG 0.350514 4.3:+14805500 MS.gene023546:CDS
AGAATTACCGACTTGGATTC+CGG 0.354165 4.3:-14805015 None:intergenic
CACTGATGTGGCGGTGCTCT+TGG 0.354267 4.3:+14805891 MS.gene023546:CDS
AACGCTGTTGGTGGTGGAAC+CGG 0.370166 4.3:+14805568 MS.gene023546:CDS
TTCTTCAGCGAAACTGGTTC+CGG 0.377933 4.3:+14805224 MS.gene023546:CDS
TCCAAGTCGGTAATTCTTGC+TGG 0.386306 4.3:+14805021 MS.gene023546:CDS
GTAGATGGTGAATCCAAGTT+TGG 0.394713 4.3:-14805647 None:intergenic
ACAGCAGCATTGACATCCTT+TGG 0.397105 4.3:-14806273 None:intergenic
GGAAATTGTAGATCTGTGTT+TGG 0.411361 4.3:+14805489 MS.gene023546:CDS
GCCTTAGCAGCAGAGATAAC+AGG 0.413078 4.3:-14806120 None:intergenic
CCAGTGGACAAAGGCTCTCT+TGG 0.425867 4.3:-14806797 None:intergenic
AGGCGATCTATGACATTTGT+AGG 0.426144 4.3:+14805920 MS.gene023546:CDS
GTTAGCGGCGTCTTCTTTGC+CGG 0.427769 4.3:-14805351 None:intergenic
GCCATATATTTCCCATGCCT+TGG 0.429047 4.3:-14806219 None:intergenic
CTAGGTTTCAACTGCTGTTG+TGG 0.430726 4.3:+14805825 MS.gene023546:intron
CAACTTATACCAACTTGAAC+AGG 0.431265 4.3:+14805965 MS.gene023546:CDS
TCCAAGGCATGGGAAATATA+TGG 0.435927 4.3:+14806218 MS.gene023546:CDS
GGCGCGTGGAACGTGTTTGC+CGG 0.438994 4.3:-14805243 None:intergenic
ATGTATGACAGGTGCCCAAC+TGG 0.444943 4.3:+14806625 MS.gene023546:intron
GATAACTGTACCGGTCTTCA+AGG 0.448969 4.3:+14805532 MS.gene023546:CDS
GTCGGTGAGGGCATGGAAGA+AGG 0.451862 4.3:+14806823 MS.gene023546:CDS
AAGTGAACCCAAACCTGAAC+CGG 0.452878 4.3:-14805587 None:intergenic
TACCTGAGGGGAAGGGTAGA+TGG 0.468178 4.3:-14805662 None:intergenic
TGCCGGAGATGAGTTGTTCA+GGG 0.468722 4.3:-14805334 None:intergenic
CGAGAGCAGCAAGATCTTCA+CGG 0.470136 4.3:-14806861 None:intergenic
TCGGTGAGGGCATGGAAGAA+GGG 0.478798 4.3:+14806824 MS.gene023546:CDS
AACCTAGGCATCATGCCGTC+AGG 0.480667 4.3:-14805074 None:intergenic
TATTACAGTGATTCCTCCGT+TGG 0.488114 4.3:+14805176 MS.gene023546:intron
CCAAGAGAGCCTTTGTCCAC+TGG 0.491892 4.3:+14806797 MS.gene023546:CDS
ACGAGGATACGGCACAAGAT+TGG 0.495414 4.3:-14806070 None:intergenic
ACCTGTTATCTCTGCTGCTA+AGG 0.495705 4.3:+14806119 MS.gene023546:CDS
CACCATCTACCCTTCCCCTC+AGG 0.496887 4.3:+14805660 MS.gene023546:CDS
GTCATCGATGAAGTTCGTTC+CGG 0.499563 4.3:+14805290 MS.gene023546:CDS
CTGGTATGTCGGTGAGGGCA+TGG 0.501551 4.3:+14806816 MS.gene023546:CDS
GGAGCAGAAGATGATGAGGA+AGG 0.503402 4.3:+14806913 MS.gene023546:CDS
CTGTTCAAGTTGGTATAAGT+TGG 0.510056 4.3:-14805964 None:intergenic
CACCCTGAACAACTCATCTC+CGG 0.515494 4.3:+14805332 MS.gene023546:CDS
TACCACATTTGAAACCAGTT+GGG 0.518530 4.3:-14806639 None:intergenic
ATCGAACTTGTGATCAATGC+GGG 0.523345 4.3:-14806764 None:intergenic
GAGAAAGATTATGAAGAAGT+TGG 0.523429 4.3:+14806883 MS.gene023546:CDS
GTTCAGGGTGGAAGAGTTGT+CGG 0.523884 4.3:-14805319 None:intergenic
CCCAGCAAGAATTACCGACT+TGG 0.525270 4.3:-14805022 None:intergenic
GGACTGTTCAGTTTGTTGAC+TGG 0.529278 4.3:+14806316 MS.gene023546:CDS
TCCTGGCGGTGACCTTGCTA+AGG 0.530128 4.3:+14806687 MS.gene023546:CDS
GAAGAGTTGTCGGTAGGTAC+CGG 0.530553 4.3:-14805309 None:intergenic
AGAAGATGATGAGGAAGGAG+AGG 0.532591 4.3:+14806918 MS.gene023546:CDS
TTATGAAGAAGTTGGTGCTG+AGG 0.534554 4.3:+14806891 MS.gene023546:CDS
GAATGTTGTACCTGAGGGGA+AGG 0.534693 4.3:-14805670 None:intergenic
CAGTAACAACACTGCTGTTG+CGG 0.536971 4.3:+14806732 MS.gene023546:CDS
GTCCACTGGTATGTCGGTGA+GGG 0.540123 4.3:+14806811 MS.gene023546:CDS
CACTTAGCCATCATACTAGC+AGG 0.541426 4.3:-14806192 None:intergenic
GATACGGCACAAGATTGGTC+TGG 0.542354 4.3:-14806065 None:intergenic
TCATGAGCAGCTATCTGTGC+CGG 0.543119 4.3:+14806146 MS.gene023546:CDS
TATGGAAAGAAATCCAAACT+TGG 0.546100 4.3:+14805634 MS.gene023546:CDS
TATGAAGAAGTTGGTGCTGA+GGG 0.548545 4.3:+14806892 MS.gene023546:CDS
ATACCACATTTGAAACCAGT+TGG 0.549643 4.3:-14806640 None:intergenic
CGGTGAGGGCATGGAAGAAG+GGG 0.558712 4.3:+14806825 MS.gene023546:CDS
TCTTCTTGAGCACACTGATG+TGG 0.559183 4.3:+14805879 MS.gene023546:CDS
GAGAGCAGCAAGATCTTCAC+GGG 0.561278 4.3:-14806860 None:intergenic
AGTATTCACATCGGTCAAGC+CGG 0.564094 4.3:+14804996 MS.gene023546:CDS
ACCTTAGCAAGGTCACCGCC+AGG 0.564664 4.3:-14806688 None:intergenic
CCAAGTCGGTAATTCTTGCT+GGG 0.565989 4.3:+14805022 MS.gene023546:CDS
GCCTTTGTCCACTGGTATGT+CGG 0.567211 4.3:+14806805 MS.gene023546:CDS
ATGAAATGAATACGAGGATA+CGG 0.568430 4.3:-14806081 None:intergenic
TCCTCTAGCGAAATTGTTAG+CGG 0.568659 4.3:-14805366 None:intergenic
AAACCTCAACGAGGTGGTGA+GGG 0.569782 4.3:-14806010 None:intergenic
GTCGATAGAACACTGTTGTA+TGG 0.573851 4.3:-14805850 None:intergenic
GCTAAGTGTGATCCAAGGCA+TGG 0.576706 4.3:+14806207 MS.gene023546:CDS
TGATATCAACCTGTTCAAGT+TGG 0.577755 4.3:-14805974 None:intergenic
GTTTGAGCCTGCTAGTATGA+TGG 0.579221 4.3:+14806185 MS.gene023546:CDS
TGAGGGAGCAGAAGATGATG+AGG 0.580692 4.3:+14806909 MS.gene023546:CDS
CAGCTCTTTGCACCTTAGCA+AGG 0.580894 4.3:-14806699 None:intergenic
AGCCTGACGGCATGATGCCT+AGG 0.582568 4.3:+14805072 MS.gene023546:CDS
ATAACTGTACCGGTCTTCAA+GGG 0.586323 4.3:+14805533 MS.gene023546:CDS
AAATTGGCTGATAACTGTAC+CGG 0.586586 4.3:+14805523 MS.gene023546:CDS
TGCCCAACTGGTTTCAAATG+TGG 0.589673 4.3:+14806637 MS.gene023546:CDS
AGCAGGCTCAAACACAGCAT+TGG 0.589885 4.3:-14806175 None:intergenic
CAAACCTCAACGAGGTGGTG+AGG 0.590642 4.3:-14806011 None:intergenic
GAGCTTTACTGTCTCGAACA+TGG 0.594726 4.3:+14805044 MS.gene023546:CDS
TGTCCACTGGTATGTCGGTG+AGG 0.595519 4.3:+14806810 MS.gene023546:CDS
GGCGGTGCTCTTGGATAATG+AGG 0.598449 4.3:+14805900 MS.gene023546:CDS
AGATCTACGAAGACGGCGCG+TGG 0.600243 4.3:-14805257 None:intergenic
TCACCGCCAGGAACAACTGA+AGG 0.606748 4.3:-14806676 None:intergenic
GGAGATCTCTTGATATTGAG+AGG 0.607664 4.3:+14805941 MS.gene023546:CDS
CCGTGGTGATGTTGTTCCAA+AGG 0.608496 4.3:+14806257 MS.gene023546:CDS
TGCATCGTGTGCTACTCCAA+CGG 0.608526 4.3:-14805192 None:intergenic
AATGTTGTACCTGAGGGGAA+GGG 0.614483 4.3:-14805669 None:intergenic
GCCGCTAACAATTTCGCTAG+AGG 0.616891 4.3:+14805365 MS.gene023546:CDS
CTAAGTGTGATCCAAGGCAT+GGG 0.617321 4.3:+14806208 MS.gene023546:CDS
CATCCCTCACCACCTCGTTG+AGG 0.618692 4.3:+14806007 MS.gene023546:CDS
TGCCCTCACCGACATACCAG+TGG 0.624103 4.3:-14806813 None:intergenic
TAACAACACTGCTGTTGCGG+AGG 0.625191 4.3:+14806735 MS.gene023546:CDS
TTCGCTAGAGGACACTACAC+TGG 0.625494 4.3:+14805377 MS.gene023546:CDS
AAGGATGTCAATGCTGCTGT+TGG 0.630667 4.3:+14806276 MS.gene023546:CDS
GGAACGAACTTCATCGATGA+CGG 0.631624 4.3:-14805288 None:intergenic
GGTCAAGCCGGAATCCAAGT+CGG 0.631989 4.3:+14805008 MS.gene023546:CDS
GGGTTCGAGATCTACGAAGA+CGG 0.637629 4.3:-14805264 None:intergenic
CGAACTTCATCGATGACGGT+GGG 0.641237 4.3:-14805284 None:intergenic
ACGAACTTCATCGATGACGG+TGG 0.644676 4.3:-14805285 None:intergenic
TCTTGAGCACACTGATGTGG+CGG 0.645120 4.3:+14805882 MS.gene023546:CDS
AGGGTGGAAGAGTTGTCGGT+AGG 0.660011 4.3:-14805315 None:intergenic
ATCGTGTGCTACTCCAACGG+AGG 0.660419 4.3:-14805189 None:intergenic
TGATGGCTAAGTGTGATCCA+AGG 0.660907 4.3:+14806202 MS.gene023546:CDS
CCTCCTTCAGTTGTTCCTGG+CGG 0.661195 4.3:+14806673 MS.gene023546:CDS
GAACATGGCATTCAGCCTGA+CGG 0.664223 4.3:+14805059 MS.gene023546:CDS
CCGCCAGGAACAACTGAAGG+AGG 0.665389 4.3:-14806673 None:intergenic
TTGGCACCATCAAAACAAAG+AGG 0.672011 4.3:+14806295 MS.gene023546:CDS
ACCGACATACCAGTGGACAA+AGG 0.672853 4.3:-14806806 None:intergenic
ACCATCAAACCTCAACGAGG+TGG 0.684702 4.3:-14806016 None:intergenic
GAAATTATCAGTATTCACAT+CGG 0.684879 4.3:+14804987 MS.gene023546:CDS
CGGAGATGAGTTGTTCAGGG+TGG 0.684993 4.3:-14805331 None:intergenic
GCTTGCTGTTTGATGTACCG+TGG 0.703831 4.3:+14806240 MS.gene023546:CDS
TCTTGAATGTTGTACCTGAG+GGG 0.708772 4.3:-14805674 None:intergenic
GATCGAACTTGTGATCAATG+CGG 0.718228 4.3:-14806765 None:intergenic
GAAAGCATGAAATGAATACG+AGG 0.732987 4.3:-14806087 None:intergenic
CCTTTGGAACAACATCACCA+CGG 0.768666 4.3:-14806257 None:intergenic
AGCACCATCAAACCTCAACG+AGG 0.774284 4.3:-14806019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATGAATTAAAAAAACTTT+AGG - chr4.3:14805126-14805145 None:intergenic 15.0%
!!! AAAAACTTTAGGTTAAAAAA+AGG - chr4.3:14805115-14805134 None:intergenic 15.0%
!!! ATTTTTTGTTCTTTTTTTTG+TGG + chr4.3:14805454-14805473 MS.gene023546:intron 15.0%
!! AAAATGAAATTAACTAACCT+AGG - chr4.3:14805092-14805111 None:intergenic 20.0%
!! AATAACTATTTGTAGAATGA+CGG + chr4.3:14806352-14806371 MS.gene023546:intron 20.0%
!! AATCATGTTGATGTAAATAT+TGG + chr4.3:14805730-14805749 MS.gene023546:intron 20.0%
!! TTCATATTATAATGTATGAC+AGG + chr4.3:14806614-14806633 MS.gene023546:intron 20.0%
!!! TAATGGTGAATTGTTATTTT+TGG + chr4.3:14805800-14805819 MS.gene023546:intron 20.0%
!!! TTTTATAAGGGTAGATAATT+TGG + chr4.3:14806428-14806447 MS.gene023546:intron 20.0%
! GAAATTATCAGTATTCACAT+CGG + chr4.3:14804987-14805006 MS.gene023546:CDS 25.0%
!!! ATTGGTTTTTCTGTTTGTAA+TGG + chr4.3:14805783-14805802 MS.gene023546:intron 25.0%
!!! GAATTGTTATTTTTGGATCT+AGG + chr4.3:14805807-14805826 MS.gene023546:intron 25.0%
AAATCTCGAAATTAGGGTTA+GGG - chr4.3:14805420-14805439 None:intergenic 30.0%
AAGCAAGAAATCTCGAAATT+AGG - chr4.3:14805427-14805446 None:intergenic 30.0%
AGCAAGAAATCTCGAAATTA+GGG - chr4.3:14805426-14805445 None:intergenic 30.0%
ATGAAATGAATACGAGGATA+CGG - chr4.3:14806084-14806103 None:intergenic 30.0%
CCTTATAAAATATGCAGCTA+CGG - chr4.3:14806418-14806437 None:intergenic 30.0%
GAGAAAGATTATGAAGAAGT+TGG + chr4.3:14806883-14806902 MS.gene023546:CDS 30.0%
GATTGATGTATAGATCATAG+TGG + chr4.3:14805757-14805776 MS.gene023546:intron 30.0%
TATGGAAAGAAATCCAAACT+TGG + chr4.3:14805634-14805653 MS.gene023546:CDS 30.0%
! CGTAGCTGCATATTTTATAA+GGG + chr4.3:14806416-14806435 MS.gene023546:intron 30.0%
!! ACAATTCACAACTTGTTACT+AGG + chr4.3:14806535-14806554 MS.gene023546:intron 30.0%
!!! TCTTTTTTTTGTGGTTCAGT+TGG + chr4.3:14805463-14805482 MS.gene023546:intron 30.0%
AAATTGGCTGATAACTGTAC+CGG + chr4.3:14805523-14805542 MS.gene023546:CDS 35.0%
ACTAGGACTTAATGTGATCT+GGG + chr4.3:14806552-14806571 MS.gene023546:intron 35.0%
ATCTTGAATGTTGTACCTGA+GGG - chr4.3:14805678-14805697 None:intergenic 35.0%
CAACTTATACCAACTTGAAC+AGG + chr4.3:14805965-14805984 MS.gene023546:CDS 35.0%
GAAATCTCGAAATTAGGGTT+AGG - chr4.3:14805421-14805440 None:intergenic 35.0%
GGAAATTGTAGATCTGTGTT+TGG + chr4.3:14805489-14805508 MS.gene023546:CDS 35.0%
TACTAGGACTTAATGTGATC+TGG + chr4.3:14806551-14806570 MS.gene023546:intron 35.0%
TGATATCAACCTGTTCAAGT+TGG - chr4.3:14805977-14805996 None:intergenic 35.0%
TGATGTATAGATCATAGTGG+TGG + chr4.3:14805760-14805779 MS.gene023546:intron 35.0%
TGGGCTACTAATTTCTCTTA+TGG + chr4.3:14806571-14806590 MS.gene023546:intron 35.0%
TTTGGATCGTGTTAGGAAAT+TGG + chr4.3:14805507-14805526 MS.gene023546:CDS 35.0%
! ATACCACATTTGAAACCAGT+TGG - chr4.3:14806643-14806662 None:intergenic 35.0%
! CCGTAGCTGCATATTTTATA+AGG + chr4.3:14806415-14806434 MS.gene023546:intron 35.0%
! GAAAGCATGAAATGAATACG+AGG - chr4.3:14806090-14806109 None:intergenic 35.0%
! GAACGTCTTTCTGTTGATTA+TGG + chr4.3:14805616-14805635 MS.gene023546:CDS 35.0%
! TACCACATTTGAAACCAGTT+GGG - chr4.3:14806642-14806661 None:intergenic 35.0%
!! AACACAGCATTGGTAATTTC+CGG - chr4.3:14806168-14806187 None:intergenic 35.0%
!! CTGTTCAAGTTGGTATAAGT+TGG - chr4.3:14805967-14805986 None:intergenic 35.0%
!! TATAGATCATAGTGGTGGAT+TGG + chr4.3:14805765-14805784 MS.gene023546:intron 35.0%
!!! AACAGTCCTCTTTGTTTTGA+TGG - chr4.3:14806304-14806323 None:intergenic 35.0%
!!! TTTTTGGTTTTCAACGCTGT+TGG + chr4.3:14805556-14805575 MS.gene023546:CDS 35.0%
AACACATTCTTCAGCGAAAC+TGG + chr4.3:14805218-14805237 MS.gene023546:CDS 40.0%
AACCAAAAACCCTTGAAGAC+CGG - chr4.3:14805545-14805564 None:intergenic 40.0%
AGGCGATCTATGACATTTGT+AGG + chr4.3:14805920-14805939 MS.gene023546:CDS 40.0%
ATCGAACTTGTGATCAATGC+GGG - chr4.3:14806767-14806786 None:intergenic 40.0%
ATCTGTGTTTGGATCGTGTT+AGG + chr4.3:14805500-14805519 MS.gene023546:CDS 40.0%
GATCGAACTTGTGATCAATG+CGG - chr4.3:14806768-14806787 None:intergenic 40.0%
GATCTTGAATGTTGTACCTG+AGG - chr4.3:14805679-14805698 None:intergenic 40.0%
GGAGATCTCTTGATATTGAG+AGG + chr4.3:14805941-14805960 MS.gene023546:CDS 40.0%
GTAGATGGTGAATCCAAGTT+TGG - chr4.3:14805650-14805669 None:intergenic 40.0%
GTCGATAGAACACTGTTGTA+TGG - chr4.3:14805853-14805872 None:intergenic 40.0%
TATTACAGTGATTCCTCCGT+TGG + chr4.3:14805176-14805195 MS.gene023546:intron 40.0%
TCCAAGGCATGGGAAATATA+TGG + chr4.3:14806218-14806237 MS.gene023546:CDS 40.0%
TCCTCTAGCGAAATTGTTAG+CGG - chr4.3:14805369-14805388 None:intergenic 40.0%
TCTTGAATGTTGTACCTGAG+GGG - chr4.3:14805677-14805696 None:intergenic 40.0%
TTGGCACCATCAAAACAAAG+AGG + chr4.3:14806295-14806314 MS.gene023546:CDS 40.0%
! ATAACTGTACCGGTCTTCAA+GGG + chr4.3:14805533-14805552 MS.gene023546:CDS 40.0%
! TTTTTGTGGTTCAGTTGGCA+AGG + chr4.3:14805468-14805487 MS.gene023546:intron 40.0%
!! AGAATTACCGACTTGGATTC+CGG - chr4.3:14805018-14805037 None:intergenic 40.0%
!! AGGTTTGGGTTCACTTCTTT+TGG + chr4.3:14805594-14805613 MS.gene023546:CDS 40.0%
!! TATGAAGAAGTTGGTGCTGA+GGG + chr4.3:14806892-14806911 MS.gene023546:CDS 40.0%
!! TTATGAAGAAGTTGGTGCTG+AGG + chr4.3:14806891-14806910 MS.gene023546:CDS 40.0%
AAGGATGTCAATGCTGCTGT+TGG + chr4.3:14806276-14806295 MS.gene023546:CDS 45.0%
AAGTGAACCCAAACCTGAAC+CGG - chr4.3:14805590-14805609 None:intergenic 45.0%
AATGTTGTACCTGAGGGGAA+GGG - chr4.3:14805672-14805691 None:intergenic 45.0%
ACCTGTTATCTCTGCTGCTA+AGG + chr4.3:14806119-14806138 MS.gene023546:CDS 45.0%
AGAAGATGATGAGGAAGGAG+AGG + chr4.3:14806918-14806937 MS.gene023546:CDS 45.0%
AGTATTCACATCGGTCAAGC+CGG + chr4.3:14804996-14805015 MS.gene023546:CDS 45.0%
CACTTAGCCATCATACTAGC+AGG - chr4.3:14806195-14806214 None:intergenic 45.0%
CAGTAACAACACTGCTGTTG+CGG + chr4.3:14806732-14806751 MS.gene023546:CDS 45.0%
CCAAGTCGGTAATTCTTGCT+GGG + chr4.3:14805022-14805041 MS.gene023546:CDS 45.0%
CTAAGTGTGATCCAAGGCAT+GGG + chr4.3:14806208-14806227 MS.gene023546:CDS 45.0%
CTAGGTTTCAACTGCTGTTG+TGG + chr4.3:14805825-14805844 MS.gene023546:intron 45.0%
GAGCTTTACTGTCTCGAACA+TGG + chr4.3:14805044-14805063 MS.gene023546:CDS 45.0%
GCCATATATTTCCCATGCCT+TGG - chr4.3:14806222-14806241 None:intergenic 45.0%
GGAACGAACTTCATCGATGA+CGG - chr4.3:14805291-14805310 None:intergenic 45.0%
GTCATCGATGAAGTTCGTTC+CGG + chr4.3:14805290-14805309 MS.gene023546:CDS 45.0%
GTTTGAGCCTGCTAGTATGA+TGG + chr4.3:14806185-14806204 MS.gene023546:CDS 45.0%
TCCAAGTCGGTAATTCTTGC+TGG + chr4.3:14805021-14805040 MS.gene023546:CDS 45.0%
TCTTCTTGAGCACACTGATG+TGG + chr4.3:14805879-14805898 MS.gene023546:CDS 45.0%
TGATGGCTAAGTGTGATCCA+AGG + chr4.3:14806202-14806221 MS.gene023546:CDS 45.0%
! GATAACTGTACCGGTCTTCA+AGG + chr4.3:14805532-14805551 MS.gene023546:CDS 45.0%
! TACCGGTCTTCAAGGGTTTT+TGG + chr4.3:14805540-14805559 MS.gene023546:CDS 45.0%
! TGCCCAACTGGTTTCAAATG+TGG + chr4.3:14806637-14806656 MS.gene023546:CDS 45.0%
! TTCTTCAGCGAAACTGGTTC+CGG + chr4.3:14805224-14805243 MS.gene023546:CDS 45.0%
!! ACAGCAGCATTGACATCCTT+TGG - chr4.3:14806276-14806295 None:intergenic 45.0%
!! CCTTTGGAACAACATCACCA+CGG - chr4.3:14806260-14806279 None:intergenic 45.0%
!! GGACTGTTCAGTTTGTTGAC+TGG + chr4.3:14806316-14806335 MS.gene023546:CDS 45.0%
!! TTGGTTTTCAACGCTGTTGG+TGG + chr4.3:14805559-14805578 MS.gene023546:CDS 45.0%
AAACCTCAACGAGGTGGTGA+GGG - chr4.3:14806013-14806032 None:intergenic 50.0%
ACCACCTCGTTGAGGTTTGA+TGG + chr4.3:14806015-14806034 MS.gene023546:CDS 50.0%
ACCATCAAACCTCAACGAGG+TGG - chr4.3:14806019-14806038 None:intergenic 50.0%
ACCGACATACCAGTGGACAA+AGG - chr4.3:14806809-14806828 None:intergenic 50.0%
ACGAGGATACGGCACAAGAT+TGG - chr4.3:14806073-14806092 None:intergenic 50.0%
AGCACCATCAAACCTCAACG+AGG - chr4.3:14806022-14806041 None:intergenic 50.0%
AGCAGGCTCAAACACAGCAT+TGG - chr4.3:14806178-14806197 None:intergenic 50.0%
ATGTATGACAGGTGCCCAAC+TGG + chr4.3:14806625-14806644 MS.gene023546:intron 50.0%
CACCCTGAACAACTCATCTC+CGG + chr4.3:14805332-14805351 MS.gene023546:CDS 50.0%
CAGCTCTTTGCACCTTAGCA+AGG - chr4.3:14806702-14806721 None:intergenic 50.0%
CGAGAGCAGCAAGATCTTCA+CGG - chr4.3:14806864-14806883 None:intergenic 50.0%
GAACATGGCATTCAGCCTGA+CGG + chr4.3:14805059-14805078 MS.gene023546:CDS 50.0%
GAAGAGTTGTCGGTAGGTAC+CGG - chr4.3:14805312-14805331 None:intergenic 50.0%
GAATGTTGTACCTGAGGGGA+AGG - chr4.3:14805673-14805692 None:intergenic 50.0%
GAGAGCAGCAAGATCTTCAC+GGG - chr4.3:14806863-14806882 None:intergenic 50.0%
GCCGCTAACAATTTCGCTAG+AGG + chr4.3:14805365-14805384 MS.gene023546:CDS 50.0%
GCCTTAGCAGCAGAGATAAC+AGG - chr4.3:14806123-14806142 None:intergenic 50.0%
GCCTTTGTCCACTGGTATGT+CGG + chr4.3:14806805-14806824 MS.gene023546:CDS 50.0%
GCTAAGTGTGATCCAAGGCA+TGG + chr4.3:14806207-14806226 MS.gene023546:CDS 50.0%
GGAGCAGAAGATGATGAGGA+AGG + chr4.3:14806913-14806932 MS.gene023546:CDS 50.0%
GGGTTCGAGATCTACGAAGA+CGG - chr4.3:14805267-14805286 None:intergenic 50.0%
GTTCAGGGTGGAAGAGTTGT+CGG - chr4.3:14805322-14805341 None:intergenic 50.0%
TAACAACACTGCTGTTGCGG+AGG + chr4.3:14806735-14806754 MS.gene023546:CDS 50.0%
TCATGAGCAGCTATCTGTGC+CGG + chr4.3:14806146-14806165 MS.gene023546:CDS 50.0%
TCTTGAGCACACTGATGTGG+CGG + chr4.3:14805882-14805901 MS.gene023546:CDS 50.0%
TGAGGGAGCAGAAGATGATG+AGG + chr4.3:14806909-14806928 MS.gene023546:CDS 50.0%
TGCCGGAGATGAGTTGTTCA+GGG - chr4.3:14805337-14805356 None:intergenic 50.0%
TTCGCTAGAGGACACTACAC+TGG + chr4.3:14805377-14805396 MS.gene023546:CDS 50.0%
TTGCCGGAGATGAGTTGTTC+AGG - chr4.3:14805338-14805357 None:intergenic 50.0%
! ACGAACTTCATCGATGACGG+TGG - chr4.3:14805288-14805307 None:intergenic 50.0%
! CCCAGCAAGAATTACCGACT+TGG - chr4.3:14805025-14805044 None:intergenic 50.0%
! CCGTGGTGATGTTGTTCCAA+AGG + chr4.3:14806257-14806276 MS.gene023546:CDS 50.0%
! CGAACTTCATCGATGACGGT+GGG - chr4.3:14805287-14805306 None:intergenic 50.0%
! GATACGGCACAAGATTGGTC+TGG - chr4.3:14806068-14806087 None:intergenic 50.0%
! TGCATCGTGTGCTACTCCAA+CGG - chr4.3:14805195-14805214 None:intergenic 50.0%
!! GCTTGCTGTTTGATGTACCG+TGG + chr4.3:14806240-14806259 MS.gene023546:CDS 50.0%
!! GTTTTCAACGCTGTTGGTGG+TGG + chr4.3:14805562-14805581 MS.gene023546:CDS 50.0%
AACCTAGGCATCATGCCGTC+AGG - chr4.3:14805077-14805096 None:intergenic 55.0%
AGGGTGGAAGAGTTGTCGGT+AGG - chr4.3:14805318-14805337 None:intergenic 55.0%
CAAACCTCAACGAGGTGGTG+AGG - chr4.3:14806014-14806033 None:intergenic 55.0%
CAGCCTCCTTCAGTTGTTCC+TGG + chr4.3:14806670-14806689 MS.gene023546:CDS 55.0%
CCAAGAGAGCCTTTGTCCAC+TGG + chr4.3:14806797-14806816 MS.gene023546:CDS 55.0%
CCAGTGGACAAAGGCTCTCT+TGG - chr4.3:14806800-14806819 None:intergenic 55.0%
CCTCCTTCAGTTGTTCCTGG+CGG + chr4.3:14806673-14806692 MS.gene023546:CDS 55.0%
CGGAGATGAGTTGTTCAGGG+TGG - chr4.3:14805334-14805353 None:intergenic 55.0%
GGCGGTGCTCTTGGATAATG+AGG + chr4.3:14805900-14805919 MS.gene023546:CDS 55.0%
GGTCAAGCCGGAATCCAAGT+CGG + chr4.3:14805008-14805027 MS.gene023546:CDS 55.0%
GTCCACTGGTATGTCGGTGA+GGG + chr4.3:14806811-14806830 MS.gene023546:CDS 55.0%
GTTAGCGGCGTCTTCTTTGC+CGG - chr4.3:14805354-14805373 None:intergenic 55.0%
TACCTGAGGGGAAGGGTAGA+TGG - chr4.3:14805665-14805684 None:intergenic 55.0%
TCACCGCCAGGAACAACTGA+AGG - chr4.3:14806679-14806698 None:intergenic 55.0%
TGTCCACTGGTATGTCGGTG+AGG + chr4.3:14806810-14806829 MS.gene023546:CDS 55.0%
! ATCGTGTGCTACTCCAACGG+AGG - chr4.3:14805192-14805211 None:intergenic 55.0%
! GGTGGAACCGGTTCAGGTTT+GGG + chr4.3:14805580-14805599 MS.gene023546:CDS 55.0%
! TCGGTGAGGGCATGGAAGAA+GGG + chr4.3:14806824-14806843 MS.gene023546:CDS 55.0%
! TGGTGGAACCGGTTCAGGTT+TGG + chr4.3:14805579-14805598 MS.gene023546:CDS 55.0%
!! AACGCTGTTGGTGGTGGAAC+CGG + chr4.3:14805568-14805587 MS.gene023546:CDS 55.0%
ACCTTAGCAAGGTCACCGCC+AGG - chr4.3:14806691-14806710 None:intergenic 60.0%
AGATCTACGAAGACGGCGCG+TGG - chr4.3:14805260-14805279 None:intergenic 60.0%
AGCCTGACGGCATGATGCCT+AGG + chr4.3:14805072-14805091 MS.gene023546:CDS 60.0%
CACCATCTACCCTTCCCCTC+AGG + chr4.3:14805660-14805679 MS.gene023546:CDS 60.0%
CACTGATGTGGCGGTGCTCT+TGG + chr4.3:14805891-14805910 MS.gene023546:CDS 60.0%
CATCCCTCACCACCTCGTTG+AGG + chr4.3:14806007-14806026 MS.gene023546:CDS 60.0%
CCGCCAGGAACAACTGAAGG+AGG - chr4.3:14806676-14806695 None:intergenic 60.0%
CTGGTATGTCGGTGAGGGCA+TGG + chr4.3:14806816-14806835 MS.gene023546:CDS 60.0%
TCCTGGCGGTGACCTTGCTA+AGG + chr4.3:14806687-14806706 MS.gene023546:CDS 60.0%
TGCCCTCACCGACATACCAG+TGG - chr4.3:14806816-14806835 None:intergenic 60.0%
! CGGTGAGGGCATGGAAGAAG+GGG + chr4.3:14806825-14806844 MS.gene023546:CDS 60.0%
! GTCGGTGAGGGCATGGAAGA+AGG + chr4.3:14806823-14806842 MS.gene023546:CDS 60.0%
!! GTTGGTGGTGGAACCGGTTC+AGG + chr4.3:14805574-14805593 MS.gene023546:CDS 60.0%
GGCGCGTGGAACGTGTTTGC+CGG - chr4.3:14805246-14805265 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 14804981 14806948 14804981 ID=MS.gene023546
chr4.3 mRNA 14804981 14806948 14804981 ID=MS.gene023546.t1;Parent=MS.gene023546
chr4.3 exon 14804981 14805093 14804981 ID=MS.gene023546.t1.exon1;Parent=MS.gene023546.t1
chr4.3 CDS 14804981 14805093 14804981 ID=cds.MS.gene023546.t1;Parent=MS.gene023546.t1
chr4.3 exon 14805184 14805398 14805184 ID=MS.gene023546.t1.exon2;Parent=MS.gene023546.t1
chr4.3 CDS 14805184 14805398 14805184 ID=cds.MS.gene023546.t1;Parent=MS.gene023546.t1
chr4.3 exon 14805482 14805681 14805482 ID=MS.gene023546.t1.exon3;Parent=MS.gene023546.t1
chr4.3 CDS 14805482 14805681 14805482 ID=cds.MS.gene023546.t1;Parent=MS.gene023546.t1
chr4.3 exon 14805829 14806337 14805829 ID=MS.gene023546.t1.exon4;Parent=MS.gene023546.t1
chr4.3 CDS 14805829 14806337 14805829 ID=cds.MS.gene023546.t1;Parent=MS.gene023546.t1
chr4.3 exon 14806636 14806948 14806636 ID=MS.gene023546.t1.exon5;Parent=MS.gene023546.t1
chr4.3 CDS 14806636 14806948 14806636 ID=cds.MS.gene023546.t1;Parent=MS.gene023546.t1
Gene Sequence

>MS.gene023546

ATGAGAGAAATTATCAGTATTCACATCGGTCAAGCCGGAATCCAAGTCGGTAATTCTTGCTGGGAGCTTTACTGTCTCGAACATGGCATTCAGCCTGACGGCATGATGCCTAGGTTAGTTAATTTCATTTTCCTTTTTTTAACCTAAAGTTTTTTTAATTCATCAATCTTATGCTTAATTTCATTTGATTCATTTTATTACAGTGATTCCTCCGTTGGAGTAGCACACGATGCATTCAACACATTCTTCAGCGAAACTGGTTCCGGCAAACACGTTCCACGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGATGAAGTTCGTTCCGGTACCTACCGACAACTCTTCCACCCTGAACAACTCATCTCCGGCAAAGAAGACGCCGCTAACAATTTCGCTAGAGGACACTACACTGGTCAGTTTCTTTTTCAAACCCTAACCCTAATTTCGAGATTTCTTGCTTTTTATTGATTTTTTGTTCTTTTTTTTGTGGTTCAGTTGGCAAGGAAATTGTAGATCTGTGTTTGGATCGTGTTAGGAAATTGGCTGATAACTGTACCGGTCTTCAAGGGTTTTTGGTTTTCAACGCTGTTGGTGGTGGAACCGGTTCAGGTTTGGGTTCACTTCTTTTGGAACGTCTTTCTGTTGATTATGGAAAGAAATCCAAACTTGGATTCACCATCTACCCTTCCCCTCAGGTACAACATTCAAGATCTTTAATACTGTTATTGTTATTGCAATGTTTAAATCATGTTGATGTAAATATTGGTGTTGATTGATGTATAGATCATAGTGGTGGATTGGTTTTTCTGTTTGTAATGGTGAATTGTTATTTTTGGATCTAGGTTTCAACTGCTGTTGTGGAGCCATACAACAGTGTTCTATCGACACATTCTCTTCTTGAGCACACTGATGTGGCGGTGCTCTTGGATAATGAGGCGATCTATGACATTTGTAGGAGATCTCTTGATATTGAGAGGCCAACTTATACCAACTTGAACAGGTTGATATCACAGATCATATCATCCCTCACCACCTCGTTGAGGTTTGATGGTGCTATCAATGTTGATATTACTGAGTTCCAGACCAATCTTGTGCCGTATCCTCGTATTCATTTCATGCTTTCGTCATATGCACCTGTTATCTCTGCTGCTAAGGCTTATCATGAGCAGCTATCTGTGCCGGAAATTACCAATGCTGTGTTTGAGCCTGCTAGTATGATGGCTAAGTGTGATCCAAGGCATGGGAAATATATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTTCCAAAGGATGTCAATGCTGCTGTTGGCACCATCAAAACAAAGAGGACTGTTCAGTTTGTTGACTGGTAACGACTCTTTCAATAACTATTTGTAGAATGACGGTGTTGTCTCGCATTGCATGTTCTGATCTGTTTAGAATTATCCGTAGCTGCATATTTTATAAGGGTAGATAATTTGGAAGATAGCATAATAATTAAGAGCTTGAAAAACTATAGCAACTAATAATACTGATTTGAAATAATCAAATTTTTTTTCTTTAGCAACAATTCACAACTTGTTACTAGGACTTAATGTGATCTGGGCTACTAATTTCTCTTATGGTGATATTCTCTATAACATTGTTCATATTATAATGTATGACAGGTGCCCAACTGGTTTCAAATGTGGTATCAACTATCAGCCTCCTTCAGTTGTTCCTGGCGGTGACCTTGCTAAGGTGCAAAGAGCTGTGTGTATGATCAGTAACAACACTGCTGTTGCGGAGGTCTTCTCCCGCATTGATCACAAGTTCGATCTGATGTATGCCAAGAGAGCCTTTGTCCACTGGTATGTCGGTGAGGGCATGGAAGAAGGGGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCTCTCGAGAAAGATTATGAAGAAGTTGGTGCTGAGGGAGCAGAAGATGATGAGGAAGGAGAGGATTATTGA

Protein sequence

>MS.gene023546.t1

MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDSSVGVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGAEDDEEGEDY