AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023548


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023548.t1 MTR_8g085980 100.000 449 0 0 1 449 1 449 0.0 936
MS.gene023548.t1 MTR_7g085800 94.989 439 22 0 1 439 1 439 0.0 857
MS.gene023548.t1 MTR_1g106005 91.111 450 39 1 1 449 1 450 0.0 840
MS.gene023548.t1 MTR_4g097830 92.711 439 32 0 1 439 1 439 0.0 839
MS.gene023548.t1 MTR_3g110720 92.922 438 31 0 1 438 1 438 0.0 838
MS.gene023548.t1 MTR_6g029190 87.333 450 54 2 1 449 1 448 0.0 799
MS.gene023548.t1 MTR_2g041670 71.659 434 118 2 1 434 1 429 0.0 632
MS.gene023548.t1 MTR_2g041400 71.795 429 116 2 1 429 1 424 0.0 623
MS.gene023548.t1 MTR_8g107250 41.425 449 252 3 1 449 1 438 1.80e-126 374
MS.gene023548.t1 MTR_4g094535 41.935 434 242 2 1 434 1 424 2.19e-126 374
MS.gene023548.t1 MTR_4g017630 41.705 434 243 2 1 434 1 424 4.33e-126 373
MS.gene023548.t1 MTR_4g019110 42.396 434 240 2 1 434 1 424 1.07e-125 372
MS.gene023548.t1 MTR_2g031310 41.935 434 242 2 1 434 1 424 1.09e-125 372
MS.gene023548.t1 MTR_4g019090 41.705 434 243 2 1 434 1 424 1.84e-125 372
MS.gene023548.t1 MTR_3g113970 40.553 434 250 1 1 434 1 426 7.68e-125 370
MS.gene023548.t1 MTR_1g101130 41.475 434 244 2 1 434 1 424 1.09e-124 370
MS.gene023548.t1 MTR_7g089120 41.475 434 244 3 1 434 1 424 1.37e-124 369
MS.gene023548.t1 MTR_8g098360 40.275 437 245 3 1 434 1 424 3.80e-124 368
MS.gene023548.t1 MTR_3g063410 90.260 154 15 0 252 405 24 177 2.33e-104 308
MS.gene023548.t1 MTR_3g063410 89.855 138 14 0 268 405 1 138 9.44e-91 272
MS.gene023548.t1 MTR_7g117050 30.562 445 288 8 2 433 3 439 9.06e-77 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023548.t1 AT5G19780 98.000 450 8 1 1 449 1 450 0.0 921
MS.gene023548.t1 AT5G19770 98.000 450 8 1 1 449 1 450 0.0 921
MS.gene023548.t1 AT1G64740 93.563 435 28 0 1 435 1 435 0.0 836
MS.gene023548.t1 AT1G04820 92.874 435 31 0 1 435 1 435 0.0 834
MS.gene023548.t1 AT1G50010 92.874 435 31 0 1 435 1 435 0.0 834
MS.gene023548.t1 AT4G14960 92.644 435 32 0 1 435 1 435 0.0 832
MS.gene023548.t1 AT4G14960 87.961 407 42 1 1 407 1 400 0.0 733
MS.gene023548.t1 AT1G75780 41.475 434 245 2 1 434 1 425 7.18e-128 378
MS.gene023548.t1 AT5G62700 41.935 434 242 2 1 434 1 424 2.03e-126 374
MS.gene023548.t1 AT5G62690 41.935 434 242 2 1 434 1 424 2.03e-126 374
MS.gene023548.t1 AT1G20010 41.244 434 246 2 1 434 1 425 2.05e-125 372
MS.gene023548.t1 AT2G29550 41.705 434 243 2 1 434 1 424 2.10e-125 372
MS.gene023548.t1 AT5G12250 41.475 434 244 3 1 434 1 424 2.93e-125 371
MS.gene023548.t1 AT4G20890 41.705 434 243 3 1 434 1 424 5.28e-125 370
MS.gene023548.t1 AT5G23860 41.475 434 244 2 1 434 1 424 1.16e-124 370
MS.gene023548.t1 AT5G23860 41.475 434 244 2 1 434 1 424 1.16e-124 370
MS.gene023548.t1 AT5G44340 41.705 434 243 3 1 434 1 424 2.57e-123 366
MS.gene023548.t1 AT5G05620 31.236 445 285 8 2 433 3 439 4.45e-78 251
MS.gene023548.t1 AT3G61650 30.519 462 295 9 2 445 3 456 6.26e-77 248

Find 128 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTCTTTCTGTTGATTA+TGG 0.176344 4.3:+14687526 MS.gene023548:CDS
AGGTTTGGGTTCACTTCTTT+TGG 0.254943 4.3:+14687504 MS.gene023548:CDS
GGTGGAACCGGTTCAGGTTT+GGG 0.262975 4.3:+14687490 MS.gene023548:CDS
CAGCCTCCTTCAGTTGTTCC+TGG 0.319747 4.3:+14688580 MS.gene023548:CDS
TTGCCGGAGATGAGTTGTTC+AGG 0.320827 4.3:-14687245 None:intergenic
AACACAGCATTGGTAATTTC+CGG 0.327913 4.3:-14688075 None:intergenic
TGGTGGAACCGGTTCAGGTT+TGG 0.328516 4.3:+14687489 MS.gene023548:CDS
AACACATTCTTCAGCGAAAC+TGG 0.328754 4.3:+14687128 MS.gene023548:CDS
TTTGGATCGTGTTAGGAAAT+TGG 0.329849 4.3:+14687417 MS.gene023548:CDS
GTTGGTGGTGGAACCGGTTC+AGG 0.343909 4.3:+14687484 MS.gene023548:CDS
ACCACCTCGTTGAGGTTTGA+TGG 0.345949 4.3:+14687925 MS.gene023548:CDS
ATCTGTGTTTGGATCGTGTT+AGG 0.350514 4.3:+14687410 MS.gene023548:CDS
AGAATTACCGACTTGGATTC+CGG 0.354165 4.3:-14686925 None:intergenic
CACTGATGTGGCGGTGCTCT+TGG 0.354267 4.3:+14687801 MS.gene023548:CDS
AACGCTGTTGGTGGTGGAAC+CGG 0.370166 4.3:+14687478 MS.gene023548:CDS
TTCTTCAGCGAAACTGGTTC+CGG 0.377933 4.3:+14687134 MS.gene023548:CDS
TCCAAGTCGGTAATTCTTGC+TGG 0.386306 4.3:+14686931 MS.gene023548:CDS
GTAGATGGTGAATCCAAGTT+TGG 0.394713 4.3:-14687557 None:intergenic
ACAGCAGCATTGACATCCTT+TGG 0.397105 4.3:-14688183 None:intergenic
GGAAATTGTAGATCTGTGTT+TGG 0.411361 4.3:+14687399 MS.gene023548:CDS
GCCTTAGCAGCAGAGATAAC+AGG 0.413078 4.3:-14688030 None:intergenic
CCAGTGGACAAAGGCTCTCT+TGG 0.425867 4.3:-14688707 None:intergenic
AGGCGATCTATGACATTTGT+AGG 0.426144 4.3:+14687830 MS.gene023548:CDS
GTTAGCGGCGTCTTCTTTGC+CGG 0.427769 4.3:-14687261 None:intergenic
GCCATATATTTCCCATGCCT+TGG 0.429047 4.3:-14688129 None:intergenic
CTAGGTTTCAACTGCTGTTG+TGG 0.430726 4.3:+14687735 MS.gene023548:intron
CAACTTATACCAACTTGAAC+AGG 0.431265 4.3:+14687875 MS.gene023548:CDS
TCCAAGGCATGGGAAATATA+TGG 0.435927 4.3:+14688128 MS.gene023548:CDS
GGCGCGTGGAACGTGTTTGC+CGG 0.438994 4.3:-14687153 None:intergenic
ATGTATGACAGGTGCCCAAC+TGG 0.444943 4.3:+14688535 MS.gene023548:intron
GATAACTGTACCGGTCTTCA+AGG 0.448969 4.3:+14687442 MS.gene023548:CDS
GTCGGTGAGGGCATGGAAGA+AGG 0.451862 4.3:+14688733 MS.gene023548:CDS
AAGTGAACCCAAACCTGAAC+CGG 0.452878 4.3:-14687497 None:intergenic
TACCTGAGGGGAAGGGTAGA+TGG 0.468178 4.3:-14687572 None:intergenic
TGCCGGAGATGAGTTGTTCA+GGG 0.468722 4.3:-14687244 None:intergenic
CGAGAGCAGCAAGATCTTCA+CGG 0.470136 4.3:-14688771 None:intergenic
TCGGTGAGGGCATGGAAGAA+GGG 0.478798 4.3:+14688734 MS.gene023548:CDS
AACCTAGGCATCATGCCGTC+AGG 0.480667 4.3:-14686984 None:intergenic
TATTACAGTGATTCCTCCGT+TGG 0.488114 4.3:+14687086 MS.gene023548:intron
CCAAGAGAGCCTTTGTCCAC+TGG 0.491892 4.3:+14688707 MS.gene023548:CDS
ACGAGGATACGGCACAAGAT+TGG 0.495414 4.3:-14687980 None:intergenic
ACCTGTTATCTCTGCTGCTA+AGG 0.495705 4.3:+14688029 MS.gene023548:CDS
CACCATCTACCCTTCCCCTC+AGG 0.496887 4.3:+14687570 MS.gene023548:CDS
GTCATCGATGAAGTTCGTTC+CGG 0.499563 4.3:+14687200 MS.gene023548:CDS
CTGGTATGTCGGTGAGGGCA+TGG 0.501551 4.3:+14688726 MS.gene023548:CDS
GGAGCAGAAGATGATGAGGA+AGG 0.503402 4.3:+14688823 MS.gene023548:CDS
CTGTTCAAGTTGGTATAAGT+TGG 0.510056 4.3:-14687874 None:intergenic
CACCCTGAACAACTCATCTC+CGG 0.515494 4.3:+14687242 MS.gene023548:CDS
TACCACATTTGAAACCAGTT+GGG 0.518530 4.3:-14688549 None:intergenic
ATCGAACTTGTGATCAATGC+GGG 0.523345 4.3:-14688674 None:intergenic
GAGAAAGATTATGAAGAAGT+TGG 0.523429 4.3:+14688793 MS.gene023548:CDS
GTTCAGGGTGGAAGAGTTGT+CGG 0.523884 4.3:-14687229 None:intergenic
CCCAGCAAGAATTACCGACT+TGG 0.525270 4.3:-14686932 None:intergenic
GGACTGTTCAGTTTGTTGAC+TGG 0.529278 4.3:+14688226 MS.gene023548:CDS
TCCTGGCGGTGACCTTGCTA+AGG 0.530128 4.3:+14688597 MS.gene023548:CDS
GAAGAGTTGTCGGTAGGTAC+CGG 0.530553 4.3:-14687219 None:intergenic
AGAAGATGATGAGGAAGGAG+AGG 0.532591 4.3:+14688828 MS.gene023548:CDS
TTATGAAGAAGTTGGTGCTG+AGG 0.534554 4.3:+14688801 MS.gene023548:CDS
GAATGTTGTACCTGAGGGGA+AGG 0.534693 4.3:-14687580 None:intergenic
CAGTAACAACACTGCTGTTG+CGG 0.536971 4.3:+14688642 MS.gene023548:CDS
GTCCACTGGTATGTCGGTGA+GGG 0.540123 4.3:+14688721 MS.gene023548:CDS
CACTTAGCCATCATACTAGC+AGG 0.541426 4.3:-14688102 None:intergenic
GATACGGCACAAGATTGGTC+TGG 0.542354 4.3:-14687975 None:intergenic
TCATGAGCAGCTATCTGTGC+CGG 0.543119 4.3:+14688056 MS.gene023548:CDS
TATGGAAAGAAATCCAAACT+TGG 0.546100 4.3:+14687544 MS.gene023548:CDS
TATGAAGAAGTTGGTGCTGA+GGG 0.548545 4.3:+14688802 MS.gene023548:CDS
ATACCACATTTGAAACCAGT+TGG 0.549643 4.3:-14688550 None:intergenic
CGGTGAGGGCATGGAAGAAG+GGG 0.558712 4.3:+14688735 MS.gene023548:CDS
TCTTCTTGAGCACACTGATG+TGG 0.559183 4.3:+14687789 MS.gene023548:CDS
GAGAGCAGCAAGATCTTCAC+GGG 0.561278 4.3:-14688770 None:intergenic
AGTATTCACATCGGTCAAGC+CGG 0.564094 4.3:+14686906 MS.gene023548:CDS
ACCTTAGCAAGGTCACCGCC+AGG 0.564664 4.3:-14688598 None:intergenic
CCAAGTCGGTAATTCTTGCT+GGG 0.565989 4.3:+14686932 MS.gene023548:CDS
GCCTTTGTCCACTGGTATGT+CGG 0.567211 4.3:+14688715 MS.gene023548:CDS
ATGAAATGAATACGAGGATA+CGG 0.568430 4.3:-14687991 None:intergenic
TCCTCTAGCGAAATTGTTAG+CGG 0.568659 4.3:-14687276 None:intergenic
AAACCTCAACGAGGTGGTGA+GGG 0.569782 4.3:-14687920 None:intergenic
GTCGATAGAACACTGTTGTA+TGG 0.573851 4.3:-14687760 None:intergenic
GCTAAGTGTGATCCAAGGCA+TGG 0.576706 4.3:+14688117 MS.gene023548:CDS
TGATATCAACCTGTTCAAGT+TGG 0.577755 4.3:-14687884 None:intergenic
GTTTGAGCCTGCTAGTATGA+TGG 0.579221 4.3:+14688095 MS.gene023548:CDS
TGAGGGAGCAGAAGATGATG+AGG 0.580692 4.3:+14688819 MS.gene023548:CDS
CAGCTCTTTGCACCTTAGCA+AGG 0.580894 4.3:-14688609 None:intergenic
AGCCTGACGGCATGATGCCT+AGG 0.582568 4.3:+14686982 MS.gene023548:CDS
ATAACTGTACCGGTCTTCAA+GGG 0.586323 4.3:+14687443 MS.gene023548:CDS
AAATTGGCTGATAACTGTAC+CGG 0.586586 4.3:+14687433 MS.gene023548:CDS
TGCCCAACTGGTTTCAAATG+TGG 0.589673 4.3:+14688547 MS.gene023548:CDS
AGCAGGCTCAAACACAGCAT+TGG 0.589885 4.3:-14688085 None:intergenic
CAAACCTCAACGAGGTGGTG+AGG 0.590642 4.3:-14687921 None:intergenic
GAGCTTTACTGTCTCGAACA+TGG 0.594726 4.3:+14686954 MS.gene023548:CDS
TGTCCACTGGTATGTCGGTG+AGG 0.595519 4.3:+14688720 MS.gene023548:CDS
GGCGGTGCTCTTGGATAATG+AGG 0.598449 4.3:+14687810 MS.gene023548:CDS
AGATCTACGAAGACGGCGCG+TGG 0.600243 4.3:-14687167 None:intergenic
TCACCGCCAGGAACAACTGA+AGG 0.606748 4.3:-14688586 None:intergenic
GGAGATCTCTTGATATTGAG+AGG 0.607664 4.3:+14687851 MS.gene023548:CDS
CCGTGGTGATGTTGTTCCAA+AGG 0.608496 4.3:+14688167 MS.gene023548:CDS
TGCATCGTGTGCTACTCCAA+CGG 0.608526 4.3:-14687102 None:intergenic
AATGTTGTACCTGAGGGGAA+GGG 0.614483 4.3:-14687579 None:intergenic
GCCGCTAACAATTTCGCTAG+AGG 0.616891 4.3:+14687275 MS.gene023548:CDS
CTAAGTGTGATCCAAGGCAT+GGG 0.617321 4.3:+14688118 MS.gene023548:CDS
CATCCCTCACCACCTCGTTG+AGG 0.618692 4.3:+14687917 MS.gene023548:CDS
TGCCCTCACCGACATACCAG+TGG 0.624103 4.3:-14688723 None:intergenic
TAACAACACTGCTGTTGCGG+AGG 0.625191 4.3:+14688645 MS.gene023548:CDS
TTCGCTAGAGGACACTACAC+TGG 0.625494 4.3:+14687287 MS.gene023548:CDS
AAGGATGTCAATGCTGCTGT+TGG 0.630667 4.3:+14688186 MS.gene023548:CDS
GGAACGAACTTCATCGATGA+CGG 0.631624 4.3:-14687198 None:intergenic
GGTCAAGCCGGAATCCAAGT+CGG 0.631989 4.3:+14686918 MS.gene023548:CDS
GGGTTCGAGATCTACGAAGA+CGG 0.637629 4.3:-14687174 None:intergenic
CGAACTTCATCGATGACGGT+GGG 0.641237 4.3:-14687194 None:intergenic
ACGAACTTCATCGATGACGG+TGG 0.644676 4.3:-14687195 None:intergenic
TCTTGAGCACACTGATGTGG+CGG 0.645120 4.3:+14687792 MS.gene023548:CDS
AGGGTGGAAGAGTTGTCGGT+AGG 0.660011 4.3:-14687225 None:intergenic
ATCGTGTGCTACTCCAACGG+AGG 0.660419 4.3:-14687099 None:intergenic
TGATGGCTAAGTGTGATCCA+AGG 0.660907 4.3:+14688112 MS.gene023548:CDS
CCTCCTTCAGTTGTTCCTGG+CGG 0.661195 4.3:+14688583 MS.gene023548:CDS
GAACATGGCATTCAGCCTGA+CGG 0.664223 4.3:+14686969 MS.gene023548:CDS
CCGCCAGGAACAACTGAAGG+AGG 0.665389 4.3:-14688583 None:intergenic
TTGGCACCATCAAAACAAAG+AGG 0.672011 4.3:+14688205 MS.gene023548:CDS
ACCGACATACCAGTGGACAA+AGG 0.672853 4.3:-14688716 None:intergenic
ACCATCAAACCTCAACGAGG+TGG 0.684702 4.3:-14687926 None:intergenic
GAAATTATCAGTATTCACAT+CGG 0.684879 4.3:+14686897 MS.gene023548:CDS
CGGAGATGAGTTGTTCAGGG+TGG 0.684993 4.3:-14687241 None:intergenic
GCTTGCTGTTTGATGTACCG+TGG 0.703831 4.3:+14688150 MS.gene023548:CDS
TCTTGAATGTTGTACCTGAG+GGG 0.708772 4.3:-14687584 None:intergenic
GATCGAACTTGTGATCAATG+CGG 0.718228 4.3:-14688675 None:intergenic
GAAAGCATGAAATGAATACG+AGG 0.732987 4.3:-14687997 None:intergenic
CCTTTGGAACAACATCACCA+CGG 0.768666 4.3:-14688167 None:intergenic
AGCACCATCAAACCTCAACG+AGG 0.774284 4.3:-14687929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATGAATTAAAAAAACTTT+AGG - chr4.3:14687036-14687055 None:intergenic 15.0%
!!! AAAAACTTTAGGTTAAAAAA+AGG - chr4.3:14687025-14687044 None:intergenic 15.0%
!!! ATTTTTTGTTCTTTTTTTTG+TGG + chr4.3:14687364-14687383 MS.gene023548:intron 15.0%
!! AAAATGAAATTAACTAACCT+AGG - chr4.3:14687002-14687021 None:intergenic 20.0%
!! AATAACTATTTGTAGAATGA+CGG + chr4.3:14688262-14688281 MS.gene023548:intron 20.0%
!! AATCATGTTGATGTAAATAT+TGG + chr4.3:14687640-14687659 MS.gene023548:intron 20.0%
!! TTCATATTATAATGTATGAC+AGG + chr4.3:14688524-14688543 MS.gene023548:intron 20.0%
!!! TAATGGTGAATTGTTATTTT+TGG + chr4.3:14687710-14687729 MS.gene023548:intron 20.0%
!!! TTTTATAAGGGTAGATAATT+TGG + chr4.3:14688338-14688357 MS.gene023548:intron 20.0%
! GAAATTATCAGTATTCACAT+CGG + chr4.3:14686897-14686916 MS.gene023548:CDS 25.0%
!!! ATTGGTTTTTCTGTTTGTAA+TGG + chr4.3:14687693-14687712 MS.gene023548:intron 25.0%
!!! GAATTGTTATTTTTGGATCT+AGG + chr4.3:14687717-14687736 MS.gene023548:intron 25.0%
AAATCTCGAAATTAGGGTTA+GGG - chr4.3:14687330-14687349 None:intergenic 30.0%
AAGCAAGAAATCTCGAAATT+AGG - chr4.3:14687337-14687356 None:intergenic 30.0%
AGCAAGAAATCTCGAAATTA+GGG - chr4.3:14687336-14687355 None:intergenic 30.0%
ATGAAATGAATACGAGGATA+CGG - chr4.3:14687994-14688013 None:intergenic 30.0%
CCTTATAAAATATGCAGCTA+CGG - chr4.3:14688328-14688347 None:intergenic 30.0%
GAGAAAGATTATGAAGAAGT+TGG + chr4.3:14688793-14688812 MS.gene023548:CDS 30.0%
GATTGATGTATAGATCATAG+TGG + chr4.3:14687667-14687686 MS.gene023548:intron 30.0%
TATGGAAAGAAATCCAAACT+TGG + chr4.3:14687544-14687563 MS.gene023548:CDS 30.0%
! CGTAGCTGCATATTTTATAA+GGG + chr4.3:14688326-14688345 MS.gene023548:intron 30.0%
!! ACAATTCACAACTTGTTACT+AGG + chr4.3:14688445-14688464 MS.gene023548:intron 30.0%
!!! TCTTTTTTTTGTGGTTCAGT+TGG + chr4.3:14687373-14687392 MS.gene023548:intron 30.0%
AAATTGGCTGATAACTGTAC+CGG + chr4.3:14687433-14687452 MS.gene023548:CDS 35.0%
ACTAGGACTTAATGTGATCT+GGG + chr4.3:14688462-14688481 MS.gene023548:intron 35.0%
ATCTTGAATGTTGTACCTGA+GGG - chr4.3:14687588-14687607 None:intergenic 35.0%
CAACTTATACCAACTTGAAC+AGG + chr4.3:14687875-14687894 MS.gene023548:CDS 35.0%
GAAATCTCGAAATTAGGGTT+AGG - chr4.3:14687331-14687350 None:intergenic 35.0%
GGAAATTGTAGATCTGTGTT+TGG + chr4.3:14687399-14687418 MS.gene023548:CDS 35.0%
TACTAGGACTTAATGTGATC+TGG + chr4.3:14688461-14688480 MS.gene023548:intron 35.0%
TGATATCAACCTGTTCAAGT+TGG - chr4.3:14687887-14687906 None:intergenic 35.0%
TGATGTATAGATCATAGTGG+TGG + chr4.3:14687670-14687689 MS.gene023548:intron 35.0%
TGGGCTACTAATTTCTCTTA+TGG + chr4.3:14688481-14688500 MS.gene023548:intron 35.0%
TTTGGATCGTGTTAGGAAAT+TGG + chr4.3:14687417-14687436 MS.gene023548:CDS 35.0%
! ATACCACATTTGAAACCAGT+TGG - chr4.3:14688553-14688572 None:intergenic 35.0%
! CCGTAGCTGCATATTTTATA+AGG + chr4.3:14688325-14688344 MS.gene023548:intron 35.0%
! GAAAGCATGAAATGAATACG+AGG - chr4.3:14688000-14688019 None:intergenic 35.0%
! GAACGTCTTTCTGTTGATTA+TGG + chr4.3:14687526-14687545 MS.gene023548:CDS 35.0%
! TACCACATTTGAAACCAGTT+GGG - chr4.3:14688552-14688571 None:intergenic 35.0%
!! AACACAGCATTGGTAATTTC+CGG - chr4.3:14688078-14688097 None:intergenic 35.0%
!! CTGTTCAAGTTGGTATAAGT+TGG - chr4.3:14687877-14687896 None:intergenic 35.0%
!! TATAGATCATAGTGGTGGAT+TGG + chr4.3:14687675-14687694 MS.gene023548:intron 35.0%
!!! AACAGTCCTCTTTGTTTTGA+TGG - chr4.3:14688214-14688233 None:intergenic 35.0%
!!! TTTTTGGTTTTCAACGCTGT+TGG + chr4.3:14687466-14687485 MS.gene023548:CDS 35.0%
AACACATTCTTCAGCGAAAC+TGG + chr4.3:14687128-14687147 MS.gene023548:CDS 40.0%
AACCAAAAACCCTTGAAGAC+CGG - chr4.3:14687455-14687474 None:intergenic 40.0%
AGGCGATCTATGACATTTGT+AGG + chr4.3:14687830-14687849 MS.gene023548:CDS 40.0%
ATCGAACTTGTGATCAATGC+GGG - chr4.3:14688677-14688696 None:intergenic 40.0%
ATCTGTGTTTGGATCGTGTT+AGG + chr4.3:14687410-14687429 MS.gene023548:CDS 40.0%
GATCGAACTTGTGATCAATG+CGG - chr4.3:14688678-14688697 None:intergenic 40.0%
GATCTTGAATGTTGTACCTG+AGG - chr4.3:14687589-14687608 None:intergenic 40.0%
GGAGATCTCTTGATATTGAG+AGG + chr4.3:14687851-14687870 MS.gene023548:CDS 40.0%
GTAGATGGTGAATCCAAGTT+TGG - chr4.3:14687560-14687579 None:intergenic 40.0%
GTCGATAGAACACTGTTGTA+TGG - chr4.3:14687763-14687782 None:intergenic 40.0%
TATTACAGTGATTCCTCCGT+TGG + chr4.3:14687086-14687105 MS.gene023548:intron 40.0%
TCCAAGGCATGGGAAATATA+TGG + chr4.3:14688128-14688147 MS.gene023548:CDS 40.0%
TCCTCTAGCGAAATTGTTAG+CGG - chr4.3:14687279-14687298 None:intergenic 40.0%
TCTTGAATGTTGTACCTGAG+GGG - chr4.3:14687587-14687606 None:intergenic 40.0%
TTGGCACCATCAAAACAAAG+AGG + chr4.3:14688205-14688224 MS.gene023548:CDS 40.0%
! ATAACTGTACCGGTCTTCAA+GGG + chr4.3:14687443-14687462 MS.gene023548:CDS 40.0%
! TTTTTGTGGTTCAGTTGGCA+AGG + chr4.3:14687378-14687397 MS.gene023548:intron 40.0%
!! AGAATTACCGACTTGGATTC+CGG - chr4.3:14686928-14686947 None:intergenic 40.0%
!! AGGTTTGGGTTCACTTCTTT+TGG + chr4.3:14687504-14687523 MS.gene023548:CDS 40.0%
!! TATGAAGAAGTTGGTGCTGA+GGG + chr4.3:14688802-14688821 MS.gene023548:CDS 40.0%
!! TTATGAAGAAGTTGGTGCTG+AGG + chr4.3:14688801-14688820 MS.gene023548:CDS 40.0%
AAGGATGTCAATGCTGCTGT+TGG + chr4.3:14688186-14688205 MS.gene023548:CDS 45.0%
AAGTGAACCCAAACCTGAAC+CGG - chr4.3:14687500-14687519 None:intergenic 45.0%
AATGTTGTACCTGAGGGGAA+GGG - chr4.3:14687582-14687601 None:intergenic 45.0%
ACCTGTTATCTCTGCTGCTA+AGG + chr4.3:14688029-14688048 MS.gene023548:CDS 45.0%
AGAAGATGATGAGGAAGGAG+AGG + chr4.3:14688828-14688847 MS.gene023548:CDS 45.0%
AGTATTCACATCGGTCAAGC+CGG + chr4.3:14686906-14686925 MS.gene023548:CDS 45.0%
CACTTAGCCATCATACTAGC+AGG - chr4.3:14688105-14688124 None:intergenic 45.0%
CAGTAACAACACTGCTGTTG+CGG + chr4.3:14688642-14688661 MS.gene023548:CDS 45.0%
CCAAGTCGGTAATTCTTGCT+GGG + chr4.3:14686932-14686951 MS.gene023548:CDS 45.0%
CTAAGTGTGATCCAAGGCAT+GGG + chr4.3:14688118-14688137 MS.gene023548:CDS 45.0%
CTAGGTTTCAACTGCTGTTG+TGG + chr4.3:14687735-14687754 MS.gene023548:intron 45.0%
GAGCTTTACTGTCTCGAACA+TGG + chr4.3:14686954-14686973 MS.gene023548:CDS 45.0%
GCCATATATTTCCCATGCCT+TGG - chr4.3:14688132-14688151 None:intergenic 45.0%
GGAACGAACTTCATCGATGA+CGG - chr4.3:14687201-14687220 None:intergenic 45.0%
GTCATCGATGAAGTTCGTTC+CGG + chr4.3:14687200-14687219 MS.gene023548:CDS 45.0%
GTTTGAGCCTGCTAGTATGA+TGG + chr4.3:14688095-14688114 MS.gene023548:CDS 45.0%
TCCAAGTCGGTAATTCTTGC+TGG + chr4.3:14686931-14686950 MS.gene023548:CDS 45.0%
TCTTCTTGAGCACACTGATG+TGG + chr4.3:14687789-14687808 MS.gene023548:CDS 45.0%
TGATGGCTAAGTGTGATCCA+AGG + chr4.3:14688112-14688131 MS.gene023548:CDS 45.0%
! GATAACTGTACCGGTCTTCA+AGG + chr4.3:14687442-14687461 MS.gene023548:CDS 45.0%
! TACCGGTCTTCAAGGGTTTT+TGG + chr4.3:14687450-14687469 MS.gene023548:CDS 45.0%
! TGCCCAACTGGTTTCAAATG+TGG + chr4.3:14688547-14688566 MS.gene023548:CDS 45.0%
! TTCTTCAGCGAAACTGGTTC+CGG + chr4.3:14687134-14687153 MS.gene023548:CDS 45.0%
!! ACAGCAGCATTGACATCCTT+TGG - chr4.3:14688186-14688205 None:intergenic 45.0%
!! CCTTTGGAACAACATCACCA+CGG - chr4.3:14688170-14688189 None:intergenic 45.0%
!! GGACTGTTCAGTTTGTTGAC+TGG + chr4.3:14688226-14688245 MS.gene023548:CDS 45.0%
!! TTGGTTTTCAACGCTGTTGG+TGG + chr4.3:14687469-14687488 MS.gene023548:CDS 45.0%
AAACCTCAACGAGGTGGTGA+GGG - chr4.3:14687923-14687942 None:intergenic 50.0%
ACCACCTCGTTGAGGTTTGA+TGG + chr4.3:14687925-14687944 MS.gene023548:CDS 50.0%
ACCATCAAACCTCAACGAGG+TGG - chr4.3:14687929-14687948 None:intergenic 50.0%
ACCGACATACCAGTGGACAA+AGG - chr4.3:14688719-14688738 None:intergenic 50.0%
ACGAGGATACGGCACAAGAT+TGG - chr4.3:14687983-14688002 None:intergenic 50.0%
AGCACCATCAAACCTCAACG+AGG - chr4.3:14687932-14687951 None:intergenic 50.0%
AGCAGGCTCAAACACAGCAT+TGG - chr4.3:14688088-14688107 None:intergenic 50.0%
ATGTATGACAGGTGCCCAAC+TGG + chr4.3:14688535-14688554 MS.gene023548:intron 50.0%
CACCCTGAACAACTCATCTC+CGG + chr4.3:14687242-14687261 MS.gene023548:CDS 50.0%
CAGCTCTTTGCACCTTAGCA+AGG - chr4.3:14688612-14688631 None:intergenic 50.0%
CGAGAGCAGCAAGATCTTCA+CGG - chr4.3:14688774-14688793 None:intergenic 50.0%
GAACATGGCATTCAGCCTGA+CGG + chr4.3:14686969-14686988 MS.gene023548:CDS 50.0%
GAAGAGTTGTCGGTAGGTAC+CGG - chr4.3:14687222-14687241 None:intergenic 50.0%
GAATGTTGTACCTGAGGGGA+AGG - chr4.3:14687583-14687602 None:intergenic 50.0%
GAGAGCAGCAAGATCTTCAC+GGG - chr4.3:14688773-14688792 None:intergenic 50.0%
GCCGCTAACAATTTCGCTAG+AGG + chr4.3:14687275-14687294 MS.gene023548:CDS 50.0%
GCCTTAGCAGCAGAGATAAC+AGG - chr4.3:14688033-14688052 None:intergenic 50.0%
GCCTTTGTCCACTGGTATGT+CGG + chr4.3:14688715-14688734 MS.gene023548:CDS 50.0%
GCTAAGTGTGATCCAAGGCA+TGG + chr4.3:14688117-14688136 MS.gene023548:CDS 50.0%
GGAGCAGAAGATGATGAGGA+AGG + chr4.3:14688823-14688842 MS.gene023548:CDS 50.0%
GGGTTCGAGATCTACGAAGA+CGG - chr4.3:14687177-14687196 None:intergenic 50.0%
GTTCAGGGTGGAAGAGTTGT+CGG - chr4.3:14687232-14687251 None:intergenic 50.0%
TAACAACACTGCTGTTGCGG+AGG + chr4.3:14688645-14688664 MS.gene023548:CDS 50.0%
TCATGAGCAGCTATCTGTGC+CGG + chr4.3:14688056-14688075 MS.gene023548:CDS 50.0%
TCTTGAGCACACTGATGTGG+CGG + chr4.3:14687792-14687811 MS.gene023548:CDS 50.0%
TGAGGGAGCAGAAGATGATG+AGG + chr4.3:14688819-14688838 MS.gene023548:CDS 50.0%
TGCCGGAGATGAGTTGTTCA+GGG - chr4.3:14687247-14687266 None:intergenic 50.0%
TTCGCTAGAGGACACTACAC+TGG + chr4.3:14687287-14687306 MS.gene023548:CDS 50.0%
TTGCCGGAGATGAGTTGTTC+AGG - chr4.3:14687248-14687267 None:intergenic 50.0%
! ACGAACTTCATCGATGACGG+TGG - chr4.3:14687198-14687217 None:intergenic 50.0%
! CCCAGCAAGAATTACCGACT+TGG - chr4.3:14686935-14686954 None:intergenic 50.0%
! CCGTGGTGATGTTGTTCCAA+AGG + chr4.3:14688167-14688186 MS.gene023548:CDS 50.0%
! CGAACTTCATCGATGACGGT+GGG - chr4.3:14687197-14687216 None:intergenic 50.0%
! GATACGGCACAAGATTGGTC+TGG - chr4.3:14687978-14687997 None:intergenic 50.0%
! TGCATCGTGTGCTACTCCAA+CGG - chr4.3:14687105-14687124 None:intergenic 50.0%
!! GCTTGCTGTTTGATGTACCG+TGG + chr4.3:14688150-14688169 MS.gene023548:CDS 50.0%
!! GTTTTCAACGCTGTTGGTGG+TGG + chr4.3:14687472-14687491 MS.gene023548:CDS 50.0%
AACCTAGGCATCATGCCGTC+AGG - chr4.3:14686987-14687006 None:intergenic 55.0%
AGGGTGGAAGAGTTGTCGGT+AGG - chr4.3:14687228-14687247 None:intergenic 55.0%
CAAACCTCAACGAGGTGGTG+AGG - chr4.3:14687924-14687943 None:intergenic 55.0%
CAGCCTCCTTCAGTTGTTCC+TGG + chr4.3:14688580-14688599 MS.gene023548:CDS 55.0%
CCAAGAGAGCCTTTGTCCAC+TGG + chr4.3:14688707-14688726 MS.gene023548:CDS 55.0%
CCAGTGGACAAAGGCTCTCT+TGG - chr4.3:14688710-14688729 None:intergenic 55.0%
CCTCCTTCAGTTGTTCCTGG+CGG + chr4.3:14688583-14688602 MS.gene023548:CDS 55.0%
CGGAGATGAGTTGTTCAGGG+TGG - chr4.3:14687244-14687263 None:intergenic 55.0%
GGCGGTGCTCTTGGATAATG+AGG + chr4.3:14687810-14687829 MS.gene023548:CDS 55.0%
GGTCAAGCCGGAATCCAAGT+CGG + chr4.3:14686918-14686937 MS.gene023548:CDS 55.0%
GTCCACTGGTATGTCGGTGA+GGG + chr4.3:14688721-14688740 MS.gene023548:CDS 55.0%
GTTAGCGGCGTCTTCTTTGC+CGG - chr4.3:14687264-14687283 None:intergenic 55.0%
TACCTGAGGGGAAGGGTAGA+TGG - chr4.3:14687575-14687594 None:intergenic 55.0%
TCACCGCCAGGAACAACTGA+AGG - chr4.3:14688589-14688608 None:intergenic 55.0%
TGTCCACTGGTATGTCGGTG+AGG + chr4.3:14688720-14688739 MS.gene023548:CDS 55.0%
! ATCGTGTGCTACTCCAACGG+AGG - chr4.3:14687102-14687121 None:intergenic 55.0%
! GGTGGAACCGGTTCAGGTTT+GGG + chr4.3:14687490-14687509 MS.gene023548:CDS 55.0%
! TCGGTGAGGGCATGGAAGAA+GGG + chr4.3:14688734-14688753 MS.gene023548:CDS 55.0%
! TGGTGGAACCGGTTCAGGTT+TGG + chr4.3:14687489-14687508 MS.gene023548:CDS 55.0%
!! AACGCTGTTGGTGGTGGAAC+CGG + chr4.3:14687478-14687497 MS.gene023548:CDS 55.0%
ACCTTAGCAAGGTCACCGCC+AGG - chr4.3:14688601-14688620 None:intergenic 60.0%
AGATCTACGAAGACGGCGCG+TGG - chr4.3:14687170-14687189 None:intergenic 60.0%
AGCCTGACGGCATGATGCCT+AGG + chr4.3:14686982-14687001 MS.gene023548:CDS 60.0%
CACCATCTACCCTTCCCCTC+AGG + chr4.3:14687570-14687589 MS.gene023548:CDS 60.0%
CACTGATGTGGCGGTGCTCT+TGG + chr4.3:14687801-14687820 MS.gene023548:CDS 60.0%
CATCCCTCACCACCTCGTTG+AGG + chr4.3:14687917-14687936 MS.gene023548:CDS 60.0%
CCGCCAGGAACAACTGAAGG+AGG - chr4.3:14688586-14688605 None:intergenic 60.0%
CTGGTATGTCGGTGAGGGCA+TGG + chr4.3:14688726-14688745 MS.gene023548:CDS 60.0%
TCCTGGCGGTGACCTTGCTA+AGG + chr4.3:14688597-14688616 MS.gene023548:CDS 60.0%
TGCCCTCACCGACATACCAG+TGG - chr4.3:14688726-14688745 None:intergenic 60.0%
! CGGTGAGGGCATGGAAGAAG+GGG + chr4.3:14688735-14688754 MS.gene023548:CDS 60.0%
! GTCGGTGAGGGCATGGAAGA+AGG + chr4.3:14688733-14688752 MS.gene023548:CDS 60.0%
!! GTTGGTGGTGGAACCGGTTC+AGG + chr4.3:14687484-14687503 MS.gene023548:CDS 60.0%
GGCGCGTGGAACGTGTTTGC+CGG - chr4.3:14687156-14687175 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 14686891 14688858 14686891 ID=MS.gene023548
chr4.3 mRNA 14686891 14688858 14686891 ID=MS.gene023548.t1;Parent=MS.gene023548
chr4.3 exon 14686891 14687003 14686891 ID=MS.gene023548.t1.exon1;Parent=MS.gene023548.t1
chr4.3 CDS 14686891 14687003 14686891 ID=cds.MS.gene023548.t1;Parent=MS.gene023548.t1
chr4.3 exon 14687094 14687308 14687094 ID=MS.gene023548.t1.exon2;Parent=MS.gene023548.t1
chr4.3 CDS 14687094 14687308 14687094 ID=cds.MS.gene023548.t1;Parent=MS.gene023548.t1
chr4.3 exon 14687392 14687591 14687392 ID=MS.gene023548.t1.exon3;Parent=MS.gene023548.t1
chr4.3 CDS 14687392 14687591 14687392 ID=cds.MS.gene023548.t1;Parent=MS.gene023548.t1
chr4.3 exon 14687739 14688247 14687739 ID=MS.gene023548.t1.exon4;Parent=MS.gene023548.t1
chr4.3 CDS 14687739 14688247 14687739 ID=cds.MS.gene023548.t1;Parent=MS.gene023548.t1
chr4.3 exon 14688546 14688858 14688546 ID=MS.gene023548.t1.exon5;Parent=MS.gene023548.t1
chr4.3 CDS 14688546 14688858 14688546 ID=cds.MS.gene023548.t1;Parent=MS.gene023548.t1
Gene Sequence

>MS.gene023548

ATGAGAGAAATTATCAGTATTCACATCGGTCAAGCCGGAATCCAAGTCGGTAATTCTTGCTGGGAGCTTTACTGTCTCGAACATGGCATTCAGCCTGACGGCATGATGCCTAGGTTAGTTAATTTCATTTTCCTTTTTTTAACCTAAAGTTTTTTTAATTCATCAATCTTATGCTTAATTTCATTTGATTCATTTTATTACAGTGATTCCTCCGTTGGAGTAGCACACGATGCATTCAACACATTCTTCAGCGAAACTGGTTCCGGCAAACACGTTCCACGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGATGAAGTTCGTTCCGGTACCTACCGACAACTCTTCCACCCTGAACAACTCATCTCCGGCAAAGAAGACGCCGCTAACAATTTCGCTAGAGGACACTACACTGGTCAGTTTCTTTTTCAAACCCTAACCCTAATTTCGAGATTTCTTGCTTTTTATTGATTTTTTGTTCTTTTTTTTGTGGTTCAGTTGGCAAGGAAATTGTAGATCTGTGTTTGGATCGTGTTAGGAAATTGGCTGATAACTGTACCGGTCTTCAAGGGTTTTTGGTTTTCAACGCTGTTGGTGGTGGAACCGGTTCAGGTTTGGGTTCACTTCTTTTGGAACGTCTTTCTGTTGATTATGGAAAGAAATCCAAACTTGGATTCACCATCTACCCTTCCCCTCAGGTACAACATTCAAGATCTTTAATACTGTTATTGTTATTGCAATGTTTAAATCATGTTGATGTAAATATTGGTGTTGATTGATGTATAGATCATAGTGGTGGATTGGTTTTTCTGTTTGTAATGGTGAATTGTTATTTTTGGATCTAGGTTTCAACTGCTGTTGTGGAGCCATACAACAGTGTTCTATCGACACATTCTCTTCTTGAGCACACTGATGTGGCGGTGCTCTTGGATAATGAGGCGATCTATGACATTTGTAGGAGATCTCTTGATATTGAGAGGCCAACTTATACCAACTTGAACAGGTTGATATCACAGATCATATCATCCCTCACCACCTCGTTGAGGTTTGATGGTGCTATCAATGTTGATATTACTGAGTTCCAGACCAATCTTGTGCCGTATCCTCGTATTCATTTCATGCTTTCGTCATATGCACCTGTTATCTCTGCTGCTAAGGCTTATCATGAGCAGCTATCTGTGCCGGAAATTACCAATGCTGTGTTTGAGCCTGCTAGTATGATGGCTAAGTGTGATCCAAGGCATGGGAAATATATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTTCCAAAGGATGTCAATGCTGCTGTTGGCACCATCAAAACAAAGAGGACTGTTCAGTTTGTTGACTGGTAACGACTCTTTCAATAACTATTTGTAGAATGACGGTGTTGTCTCGCATTGCATGTTCTGATCTGTTTAGAATTATCCGTAGCTGCATATTTTATAAGGGTAGATAATTTGGAAGATAGCATAATAATTAAGAGCTTGAAAAACTATAGCAACTAATAATACTGATTTGAAATAATCAAATTTTTTTTCTTTAGCAACAATTCACAACTTGTTACTAGGACTTAATGTGATCTGGGCTACTAATTTCTCTTATGGTGATATTCTCTATAACATTGTTCATATTATAATGTATGACAGGTGCCCAACTGGTTTCAAATGTGGTATCAACTATCAGCCTCCTTCAGTTGTTCCTGGCGGTGACCTTGCTAAGGTGCAAAGAGCTGTGTGTATGATCAGTAACAACACTGCTGTTGCGGAGGTCTTCTCCCGCATTGATCACAAGTTCGATCTGATGTATGCCAAGAGAGCCTTTGTCCACTGGTATGTCGGTGAGGGCATGGAAGAAGGGGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCTCTCGAGAAAGATTATGAAGAAGTTGGTGCTGAGGGAGCAGAAGATGATGAGGAAGGAGAGGATTATTGA

Protein sequence

>MS.gene023548.t1

MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDSSVGVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGAEDDEEGEDY