Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024280.t1 | XP_003624502.1 | 97.5 | 837 | 21 | 0 | 10 | 846 | 1 | 837 | 0.00E+00 | 1650.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024280.t1 | P94078 | 74.6 | 838 | 208 | 3 | 10 | 846 | 1 | 834 | 0.0e+00 | 1292.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024280.t1 | G7KX96 | 97.5 | 837 | 21 | 0 | 10 | 846 | 1 | 837 | 0.0e+00 | 1650.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene73391 | MS.gene024280 | PPI |
MS.gene033714 | MS.gene024280 | PPI |
MS.gene033712 | MS.gene024280 | PPI |
MS.gene065392 | MS.gene024280 | PPI |
MS.gene024280 | MS.gene024279 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024280.t1 | MTR_7g084040 | 97.491 | 837 | 21 | 0 | 10 | 846 | 1 | 837 | 0.0 | 1705 |
MS.gene024280.t1 | MTR_7g084030 | 68.974 | 838 | 255 | 3 | 10 | 846 | 46 | 879 | 0.0 | 1226 |
MS.gene024280.t1 | MTR_3g098650 | 67.711 | 830 | 260 | 5 | 24 | 846 | 17 | 845 | 0.0 | 1207 |
MS.gene024280.t1 | MTR_7g084030 | 68.719 | 812 | 249 | 3 | 10 | 820 | 1 | 808 | 0.0 | 1183 |
MS.gene024280.t1 | MTR_8g075330 | 60.285 | 841 | 318 | 3 | 16 | 846 | 15 | 849 | 0.0 | 1094 |
MS.gene024280.t1 | MTR_6g008850 | 27.721 | 873 | 490 | 25 | 44 | 829 | 137 | 955 | 4.64e-90 | 309 |
MS.gene024280.t1 | MTR_4g071680 | 26.690 | 873 | 486 | 26 | 44 | 829 | 137 | 942 | 2.65e-79 | 278 |
MS.gene024280.t1 | MTR_3g013720 | 73.469 | 49 | 13 | 0 | 57 | 105 | 11 | 59 | 1.75e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024280.t1 | AT3G26720 | 74.582 | 838 | 208 | 3 | 10 | 846 | 1 | 834 | 0.0 | 1328 |
MS.gene024280.t1 | AT3G26720 | 74.582 | 838 | 208 | 3 | 10 | 846 | 1 | 834 | 0.0 | 1325 |
MS.gene024280.t1 | AT3G26720 | 74.582 | 838 | 208 | 3 | 10 | 846 | 1 | 834 | 0.0 | 1325 |
MS.gene024280.t1 | AT3G26720 | 74.582 | 838 | 208 | 3 | 10 | 846 | 1 | 834 | 0.0 | 1325 |
MS.gene024280.t1 | AT3G26720 | 74.582 | 838 | 208 | 3 | 10 | 846 | 1 | 834 | 0.0 | 1323 |
MS.gene024280.t1 | AT5G13980 | 64.497 | 845 | 284 | 6 | 10 | 846 | 1 | 837 | 0.0 | 1160 |
MS.gene024280.t1 | AT5G13980 | 64.497 | 845 | 284 | 6 | 10 | 846 | 1 | 837 | 0.0 | 1160 |
MS.gene024280.t1 | AT5G13980 | 64.497 | 845 | 284 | 6 | 10 | 846 | 1 | 837 | 0.0 | 1159 |
MS.gene024280.t1 | AT5G66150 | 58.363 | 855 | 327 | 5 | 15 | 846 | 16 | 864 | 0.0 | 1063 |
MS.gene024280.t1 | AT5G66150 | 58.411 | 856 | 326 | 6 | 15 | 846 | 16 | 865 | 0.0 | 1060 |
MS.gene024280.t1 | AT5G66150 | 56.153 | 577 | 223 | 6 | 294 | 846 | 1 | 571 | 0.0 | 682 |
MS.gene024280.t1 | AT5G14950 | 27.429 | 875 | 493 | 25 | 44 | 829 | 151 | 972 | 5.86e-89 | 306 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGTATTGGCTTGCATTTC+CGG | 0.117350 | 7.3:+24539983 | MS.gene024280:CDS |
TTGTGCAGATTCGAGATTTC+AGG | 0.197419 | 7.3:+24542059 | MS.gene024280:intron |
TGCATCTGCACTTGCTTTAT+TGG | 0.200055 | 7.3:+24537515 | MS.gene024280:CDS |
TACAAGTAGGCCAGCTTTAA+AGG | 0.202361 | 7.3:+24537090 | MS.gene024280:CDS |
TCATTCTTTCAGGTTAATTT+AGG | 0.202674 | 7.3:+24542451 | MS.gene024280:intron |
AACCTGCTGATCAGATTTAA+TGG | 0.241905 | 7.3:-24541292 | None:intergenic |
TGATGTTTCCCAACCTATTC+AGG | 0.255739 | 7.3:+24535833 | MS.gene024280:CDS |
AGATAGAGCCAAACGATTAA+AGG | 0.256000 | 7.3:+24535586 | MS.gene024280:CDS |
TGTCCTGCGCGGTCCGATAT+TGG | 0.263077 | 7.3:+24541420 | MS.gene024280:CDS |
ACTTCATTTCAGATATTTAC+TGG | 0.278999 | 7.3:+24535759 | MS.gene024280:intron |
ACCTGCTGGAAGCCTGTTAC+AGG | 0.280988 | 7.3:-24537570 | None:intergenic |
ATGGACGCGACTTCATTAAA+AGG | 0.290746 | 7.3:+24541920 | MS.gene024280:CDS |
AGGTTGTTTGGCAAGGTTCC+AGG | 0.308728 | 7.3:+24535621 | MS.gene024280:CDS |
GCAGTTCAGGCTTACTTACT+TGG | 0.318307 | 7.3:+24535371 | MS.gene024280:CDS |
GCTATCAATATGCTAATTCA+TGG | 0.319606 | 7.3:+24536378 | MS.gene024280:CDS |
ACATAGATAAACTTGCGATT+TGG | 0.321410 | 7.3:-24534701 | None:intergenic |
TCACATGCGAACTTGATCTT+TGG | 0.334210 | 7.3:-24537542 | None:intergenic |
TCTTGGTGGACCGCTCAGTT+GGG | 0.352125 | 7.3:+24542509 | MS.gene024280:CDS |
CTGATCATCCAAATGCATAT+TGG | 0.358385 | 7.3:+24537056 | MS.gene024280:CDS |
AGAAAACTCTAGAGGTTGTT+TGG | 0.360019 | 7.3:+24535609 | MS.gene024280:CDS |
CAATTTATCAAAGATGAGTT+TGG | 0.360039 | 7.3:+24535302 | MS.gene024280:CDS |
TTTGCTGCCTCCACCATCTC+TGG | 0.360724 | 7.3:-24534861 | None:intergenic |
GTCTTGGTGGACCGCTCAGT+TGG | 0.363453 | 7.3:+24542508 | MS.gene024280:CDS |
AATATGCTAATTCATGGTTT+AGG | 0.365634 | 7.3:+24536384 | MS.gene024280:CDS |
TAAAAGAACTCTACCTGAAT+AGG | 0.365941 | 7.3:-24535846 | None:intergenic |
GTTTGGCCATTCTGCAGTTC+AGG | 0.369063 | 7.3:+24535358 | MS.gene024280:CDS |
TTCGAGATTTCAGGACTGAT+TGG | 0.376321 | 7.3:+24542068 | MS.gene024280:CDS |
GAGGACAGTAGCTTATATTA+AGG | 0.378777 | 7.3:-24537943 | None:intergenic |
TATGCAAAGCGGATTTCAAT+AGG | 0.386527 | 7.3:+24537392 | MS.gene024280:CDS |
ACAGATTGTGAGGATATATA+AGG | 0.393438 | 7.3:+24541660 | MS.gene024280:intron |
CTGATTGATCAGACTACTCT+TGG | 0.394062 | 7.3:+24535275 | MS.gene024280:CDS |
ACCTGCTGATCAGATTTAAT+GGG | 0.394847 | 7.3:-24541291 | None:intergenic |
CAAGTTTATCTATGTTGAAA+TGG | 0.396778 | 7.3:+24534709 | MS.gene024280:CDS |
TTTCAAGGGAGGAATGAATC+AGG | 0.407807 | 7.3:+24537278 | MS.gene024280:CDS |
AACAATGAGTGGTTACTATC+AGG | 0.407898 | 7.3:+24537123 | MS.gene024280:CDS |
TGGCAAGGTTCCAGGTCCCT+TGG | 0.410907 | 7.3:+24535629 | MS.gene024280:CDS |
TAACCAGTCCAATATGCATT+TGG | 0.411552 | 7.3:-24537064 | None:intergenic |
GGCTGGCAGATTGATCCGTT+TGG | 0.418749 | 7.3:+24535341 | MS.gene024280:CDS |
CATGTGATAAACCCTGTAAC+AGG | 0.420690 | 7.3:+24537558 | MS.gene024280:CDS |
ACAAACTCTAATGGAGTTGT+TGG | 0.420725 | 7.3:-24534542 | None:intergenic |
TCAATCTGCCAGCCAACTCT+TGG | 0.422596 | 7.3:-24535332 | None:intergenic |
TTTGCATCAGTGTAGATAGA+TGG | 0.423252 | 7.3:-24536607 | None:intergenic |
GTTTATTCACTATGTCAATC+AGG | 0.425293 | 7.3:+24536418 | MS.gene024280:CDS |
TCAGAAGCTACCTTGGCTAA+TGG | 0.425782 | 7.3:+24537968 | MS.gene024280:CDS |
GACGGAGAAACAAACTCTAA+TGG | 0.431950 | 7.3:-24534551 | None:intergenic |
TTAATCGTTTGGCTCTATCT+TGG | 0.432559 | 7.3:-24535583 | None:intergenic |
TATTTGACCATCTACCAAAC+TGG | 0.432627 | 7.3:-24542536 | None:intergenic |
ACAAGTAGGCCAGCTTTAAA+GGG | 0.433645 | 7.3:+24537091 | MS.gene024280:CDS |
TCCCATTAAATCTGATCAGC+AGG | 0.434621 | 7.3:+24541290 | MS.gene024280:CDS |
TATTTAGGCAGCAAGGCAAT+TGG | 0.434701 | 7.3:+24537250 | MS.gene024280:intron |
CGATATAGAACTCTCGGTCT+TGG | 0.435660 | 7.3:+24542492 | MS.gene024280:CDS |
TCGAGATTTCAGGACTGATT+GGG | 0.436029 | 7.3:+24542069 | MS.gene024280:CDS |
AGGCCATCATCCACAGGTAT+AGG | 0.440290 | 7.3:-24541829 | None:intergenic |
TCAGCTAACGCGTCAGTGTT+TGG | 0.440480 | 7.3:-24537302 | None:intergenic |
CTTGGTGGACCGCTCAGTTG+GGG | 0.442323 | 7.3:+24542510 | MS.gene024280:CDS |
TTCTGTGATATCATCACTCT+TGG | 0.442682 | 7.3:+24534673 | MS.gene024280:CDS |
TGTGAGGATATATAAGGAAA+AGG | 0.447116 | 7.3:+24541666 | MS.gene024280:CDS |
AATCACATAATGTGGGCAAT+GGG | 0.449122 | 7.3:+24536344 | MS.gene024280:CDS |
CTACTTTATTCCGCAGATGA+AGG | 0.452311 | 7.3:+24540442 | MS.gene024280:CDS |
TGTATCTGCTGCCTTGGCTC+AGG | 0.455607 | 7.3:+24535999 | MS.gene024280:CDS |
GCTCAATTCGTGGGTATCTC+AGG | 0.456024 | 7.3:+24541459 | MS.gene024280:CDS |
TGACTTTGTATCTGCTGCCT+TGG | 0.457211 | 7.3:+24535993 | MS.gene024280:CDS |
TGATGTACTTCATCCAATAT+CGG | 0.457448 | 7.3:-24541433 | None:intergenic |
TTGTTTATAATCCTCTTGCT+TGG | 0.459312 | 7.3:+24538133 | MS.gene024280:CDS |
GAAGTGAACCAACCCGTAGC+TGG | 0.459418 | 7.3:+24542097 | MS.gene024280:CDS |
ACATTCTACACAGATTCTAA+TGG | 0.461165 | 7.3:+24541901 | MS.gene024280:CDS |
ACTAATAATAGCATAGAAGT+TGG | 0.461610 | 7.3:+24540403 | MS.gene024280:CDS |
ATCTCGAACGTGAATCCATC+AGG | 0.466466 | 7.3:-24535807 | None:intergenic |
ATCTGTGTAGAATGTCTTGT+TGG | 0.467544 | 7.3:-24541893 | None:intergenic |
CTGCTGGGGACCTCAAGTAT+TGG | 0.471878 | 7.3:+24539970 | MS.gene024280:CDS |
TATTTACTGGGATATTTCCC+AGG | 0.474860 | 7.3:+24535772 | MS.gene024280:CDS |
TAATTTGCAGGCAGAAGGCT+TGG | 0.477127 | 7.3:+24537491 | MS.gene024280:intron |
CAAGAGTAGTCTGATCAATC+AGG | 0.477934 | 7.3:-24535274 | None:intergenic |
GAACTCTACCTGAATAGGTT+GGG | 0.478148 | 7.3:-24535841 | None:intergenic |
ATCAGGAGGATCATAATGCC+TGG | 0.478368 | 7.3:-24535790 | None:intergenic |
TATGTAGGAACAGCCCCTGC+TGG | 0.480936 | 7.3:+24539954 | MS.gene024280:CDS |
CAATCAGGTCAATGTAATGC+GGG | 0.481134 | 7.3:-24535259 | None:intergenic |
TTAATGGGAAACGAGCCATT+TGG | 0.481967 | 7.3:-24541276 | None:intergenic |
CTCAAAGTAATATTAGATAT+AGG | 0.489671 | 7.3:-24539906 | None:intergenic |
TTTCCTTCCCAGAAGAGTCC+TGG | 0.490072 | 7.3:-24539866 | None:intergenic |
ATACCTGTGGATGATGGCCT+TGG | 0.493634 | 7.3:+24541832 | MS.gene024280:CDS |
CAGCACCATGATGCTGTTAG+TGG | 0.494009 | 7.3:+24537341 | MS.gene024280:CDS |
CCTCACTCTCATGATGATGT+TGG | 0.496579 | 7.3:+24534484 | MS.gene024280:CDS |
ATAATCCTCTTGCTTGGACG+AGG | 0.496901 | 7.3:+24538139 | MS.gene024280:CDS |
CTCACGTAACCCTTTAAAGC+TGG | 0.497153 | 7.3:-24537100 | None:intergenic |
CCGGTATCTGTACCTCCCAT+TGG | 0.498659 | 7.3:+24540002 | MS.gene024280:CDS |
GGGTAATAGTTTCCAGCTAC+GGG | 0.500717 | 7.3:-24542109 | None:intergenic |
ATGTAGGAACAGCCCCTGCT+GGG | 0.502770 | 7.3:+24539955 | MS.gene024280:CDS |
AAATAGAGCTGATGCTCCAC+AGG | 0.510798 | 7.3:+24542554 | MS.gene024280:CDS |
AGAACTCTACCTGAATAGGT+TGG | 0.512423 | 7.3:-24535842 | None:intergenic |
CATGATGATGTAAGAGGTGT+TGG | 0.512514 | 7.3:+24542732 | MS.gene024280:CDS |
TGTGATATCATCACTCTTGG+AGG | 0.514448 | 7.3:+24534676 | MS.gene024280:CDS |
TGGGTAATAGTTTCCAGCTA+CGG | 0.515329 | 7.3:-24542110 | None:intergenic |
TATAGAACTCTCGGTCTTGG+TGG | 0.519296 | 7.3:+24542495 | MS.gene024280:CDS |
AGTATCAAGTCGTAAGCATA+CGG | 0.519696 | 7.3:+24540040 | MS.gene024280:CDS |
ACTCTAGAGGTTGTTTGGCA+AGG | 0.521960 | 7.3:+24535614 | MS.gene024280:CDS |
AGTCAAAGATCTTGTCAACT+CGG | 0.525179 | 7.3:+24534903 | MS.gene024280:CDS |
ACTCTCATGATGATGTTGGT+TGG | 0.525408 | 7.3:+24534488 | MS.gene024280:CDS |
CCAATGGGAGGTACAGATAC+CGG | 0.526896 | 7.3:-24540002 | None:intergenic |
CTTCATTTCAGATATTTACT+GGG | 0.527545 | 7.3:+24535760 | MS.gene024280:intron |
TTTCTTAATTTGCAGGCAGA+AGG | 0.528909 | 7.3:+24537486 | MS.gene024280:intron |
GCATACGTCTTCCGTCCAAA+TGG | 0.530662 | 7.3:+24541261 | MS.gene024280:CDS |
CCCTGTAACAGGCTTCCAGC+AGG | 0.531458 | 7.3:+24537569 | MS.gene024280:CDS |
CAATACTTGAGGTCCCCAGC+AGG | 0.532366 | 7.3:-24539969 | None:intergenic |
TTCTTCTTGTACAGATTGTG+AGG | 0.533573 | 7.3:+24541650 | MS.gene024280:intron |
TAATTCATGGTTTAGGCAGA+TGG | 0.534719 | 7.3:+24536391 | MS.gene024280:CDS |
ACATAGGTGCTGAAACCAAT+GGG | 0.537404 | 7.3:-24540017 | None:intergenic |
AAATATGTCAAAGCATATGT+AGG | 0.537444 | 7.3:+24539939 | MS.gene024280:CDS |
CCACATTATGTGATTCGTCC+TGG | 0.539153 | 7.3:-24536336 | None:intergenic |
TTGCCAAGGCCATCATCCAC+AGG | 0.540002 | 7.3:-24541835 | None:intergenic |
GTCAAAGATCTTGTCAACTC+GGG | 0.540144 | 7.3:+24534904 | MS.gene024280:CDS |
GGGCCTATACCTGTGGATGA+TGG | 0.540711 | 7.3:+24541826 | MS.gene024280:CDS |
CATCCAAATGCATATTGGAC+TGG | 0.541163 | 7.3:+24537061 | MS.gene024280:CDS |
ACATTTATCAGCAATGCAAA+CGG | 0.541893 | 7.3:-24542772 | None:intergenic |
AGATAAAATAAACGTGCACT+TGG | 0.542140 | 7.3:+24534459 | MS.gene024280:CDS |
TGAAGAAGAACCAAGGGACC+TGG | 0.542740 | 7.3:-24535639 | None:intergenic |
TGTCCAGGACTCTTCTGGGA+AGG | 0.542814 | 7.3:+24539863 | MS.gene024280:CDS |
ACAAAGCACAGCCACTAAAA+CGG | 0.545979 | 7.3:-24534386 | None:intergenic |
TCCTCCGTCAGAAGCTACCT+TGG | 0.546594 | 7.3:+24537961 | MS.gene024280:CDS |
GAATCACATAATGTGGGCAA+TGG | 0.546667 | 7.3:+24536343 | MS.gene024280:CDS |
TTTGGTAAGATTCCAAGAGT+TGG | 0.547022 | 7.3:+24535320 | MS.gene024280:CDS |
GTAAGATTCCAAGAGTTGGC+TGG | 0.547281 | 7.3:+24535324 | MS.gene024280:CDS |
TTCTTGATATTTAGGCAGCA+AGG | 0.550166 | 7.3:+24537243 | MS.gene024280:intron |
AGGCATTATGATCCTCCTGA+TGG | 0.552489 | 7.3:+24535792 | MS.gene024280:CDS |
TGGACGCGACTTCATTAAAA+GGG | 0.554065 | 7.3:+24541921 | MS.gene024280:CDS |
ATACTTGAGGTCCCCAGCAG+GGG | 0.555820 | 7.3:-24539967 | None:intergenic |
TACATCAACAGCTCAATTCG+TGG | 0.556275 | 7.3:+24541449 | MS.gene024280:CDS |
TGATTGATCAGACTACTCTT+GGG | 0.560165 | 7.3:+24535276 | MS.gene024280:CDS |
TAATCCTCTTGCTTGGACGA+GGG | 0.560961 | 7.3:+24538140 | MS.gene024280:CDS |
AATACTTGAGGTCCCCAGCA+GGG | 0.563201 | 7.3:-24539968 | None:intergenic |
GGCTTACTTACTTGGAGCTG+AGG | 0.563211 | 7.3:+24535379 | MS.gene024280:CDS |
CCTGCTGGAAGCCTGTTACA+GGG | 0.563293 | 7.3:-24537569 | None:intergenic |
AGATAGCGATATAGAACTCT+CGG | 0.564919 | 7.3:+24542486 | MS.gene024280:CDS |
ACCAGGCCTCACCTGAGCCA+AGG | 0.567720 | 7.3:-24536010 | None:intergenic |
CTGTGCCACTAACAGCATCA+TGG | 0.569031 | 7.3:-24537346 | None:intergenic |
GCCACAGGTTTCCACTGCAG+AGG | 0.569097 | 7.3:+24539836 | MS.gene024280:intron |
GAGTAATAACTTCTTTGCCA+AGG | 0.569342 | 7.3:-24541849 | None:intergenic |
CTTACGACTTGATACTACAT+AGG | 0.571591 | 7.3:-24540033 | None:intergenic |
TGGGGATAATAAAGATTCCC+AGG | 0.573380 | 7.3:+24540715 | MS.gene024280:CDS |
CCAGGACGAATCACATAATG+TGG | 0.574825 | 7.3:+24536336 | MS.gene024280:CDS |
TCCTCCCTCGTCCAAGCAAG+AGG | 0.575053 | 7.3:-24538144 | None:intergenic |
ATGCTTCATGATGATGTAAG+AGG | 0.581510 | 7.3:+24542726 | MS.gene024280:CDS |
AATAGTTTCCAGCTACGGGT+TGG | 0.584416 | 7.3:-24542105 | None:intergenic |
TGAACTGCAGAATGGCCAAA+CGG | 0.588119 | 7.3:-24535356 | None:intergenic |
GTTTCTAGGCTAATGTGACC+AGG | 0.588358 | 7.3:+24536318 | MS.gene024280:intron |
TTGGTGGACCGCTCAGTTGG+GGG | 0.588993 | 7.3:+24542511 | MS.gene024280:CDS |
TCATATTTCAATTATCTCAA+CGG | 0.590231 | 7.3:+24540360 | MS.gene024280:CDS |
TGGACGGAAGACGTATGCCC+CGG | 0.590238 | 7.3:-24541256 | None:intergenic |
TACATAGGTGCTGAAACCAA+TGG | 0.592627 | 7.3:-24540018 | None:intergenic |
TCAACGGAGTTCAGATCAGA+AGG | 0.595112 | 7.3:+24540376 | MS.gene024280:CDS |
CATCACTGTGGTGAGTGAGT+TGG | 0.595389 | 7.3:-24534338 | None:intergenic |
CACAGTGATGATGATCAATA+CGG | 0.600911 | 7.3:+24534351 | MS.gene024280:CDS |
TCAGGAGGATCATAATGCCT+GGG | 0.602840 | 7.3:-24535789 | None:intergenic |
TGCATTGCTGATAAATGTGA+AGG | 0.602938 | 7.3:+24542777 | MS.gene024280:CDS |
ATGAATTAGCATATTGATAG+CGG | 0.606108 | 7.3:-24536376 | None:intergenic |
AGTAAGCCTGAACTGCAGAA+TGG | 0.616488 | 7.3:-24535364 | None:intergenic |
AGTAGCTTATATTAAGGAGA+GGG | 0.617083 | 7.3:-24537937 | None:intergenic |
TCCTCTTGCTTGGACGAGGG+AGG | 0.619804 | 7.3:+24538143 | MS.gene024280:CDS |
ATAGATTGGGCCTATACCTG+TGG | 0.623623 | 7.3:+24541819 | MS.gene024280:intron |
GCCAAGGTAGCTTCTGACGG+AGG | 0.624916 | 7.3:-24537962 | None:intergenic |
TGTAGGAACAGCCCCTGCTG+GGG | 0.627495 | 7.3:+24539956 | MS.gene024280:CDS |
ACATCAACAGCTCAATTCGT+GGG | 0.627777 | 7.3:+24541450 | MS.gene024280:CDS |
GTATCAAGTCGTAAGCATAC+GGG | 0.629566 | 7.3:+24540041 | MS.gene024280:CDS |
TTAGCCAAGGTAGCTTCTGA+CGG | 0.631493 | 7.3:-24537965 | None:intergenic |
TACTTGTGAAGAAGAACCAA+GGG | 0.636369 | 7.3:-24535645 | None:intergenic |
ATTAAAGGAGAAAACTCTAG+AGG | 0.636570 | 7.3:+24535601 | MS.gene024280:CDS |
TGGGAAACGAGCCATTTGGA+CGG | 0.639577 | 7.3:-24541272 | None:intergenic |
CAGTAGCTTATATTAAGGAG+AGG | 0.640047 | 7.3:-24537938 | None:intergenic |
ACCGTTGATCAGTACTACGT+TGG | 0.642186 | 7.3:+24534517 | MS.gene024280:CDS |
GAAATGCAAGCCAATACTTG+AGG | 0.645892 | 7.3:-24539980 | None:intergenic |
TCAATCAGGTCAATGTAATG+CGG | 0.655563 | 7.3:-24535260 | None:intergenic |
CCAACATCATCATGAGAGTG+AGG | 0.655998 | 7.3:-24534484 | None:intergenic |
CATCCAATATCGGACCGCGC+AGG | 0.657281 | 7.3:-24541423 | None:intergenic |
AATATGCAGCTAATGAGCAG+TGG | 0.661561 | 7.3:+24536629 | MS.gene024280:CDS |
TTACTTGTGAAGAAGAACCA+AGG | 0.666220 | 7.3:-24535646 | None:intergenic |
ATCACATAATGTGGGCAATG+GGG | 0.676792 | 7.3:+24536345 | MS.gene024280:CDS |
AATAGCATAGAAGTTGGACA+AGG | 0.679887 | 7.3:+24540409 | MS.gene024280:CDS |
TCCAACGTAGTACTGATCAA+CGG | 0.683225 | 7.3:-24534518 | None:intergenic |
CAGGACGAATCACATAATGT+GGG | 0.687103 | 7.3:+24536337 | MS.gene024280:CDS |
CAGGTCAATGTAATGCGGGG+TGG | 0.688828 | 7.3:-24535255 | None:intergenic |
ATAGCATAGAAGTTGGACAA+GGG | 0.691079 | 7.3:+24540410 | MS.gene024280:CDS |
AATCAGGTCAATGTAATGCG+GGG | 0.692814 | 7.3:-24535258 | None:intergenic |
GGTTACGTGAGAACAATGAG+TGG | 0.698149 | 7.3:+24537112 | MS.gene024280:CDS |
TCGAACGTGAATCCATCAGG+AGG | 0.700399 | 7.3:-24535804 | None:intergenic |
TGGTATGTGCATGCATGACG+AGG | 0.712035 | 7.3:+24535232 | MS.gene024280:CDS |
TAGCTGCTGATTATGCAAAG+CGG | 0.723096 | 7.3:+24537381 | MS.gene024280:CDS |
GATTTCAATAGGCTATGACG+AGG | 0.742371 | 7.3:+24537403 | MS.gene024280:CDS |
TAGGTGCTGAAACCAATGGG+AGG | 0.751093 | 7.3:-24540014 | None:intergenic |
CGTATTGATCATCATCACTG+TGG | 0.752731 | 7.3:-24534350 | None:intergenic |
TAGAATACAACATCACACAG+AGG | 0.780508 | 7.3:+24534428 | MS.gene024280:CDS |
AGTGATGATGATCAATACGG+TGG | 0.815070 | 7.3:+24534354 | MS.gene024280:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 24534331 | 24542827 | 24534331 | ID=MS.gene024280 |
chr7.3 | mRNA | 24534331 | 24542827 | 24534331 | ID=MS.gene024280.t1;Parent=MS.gene024280 |
chr7.3 | exon | 24534331 | 24534558 | 24534331 | ID=MS.gene024280.t1.exon1;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24534331 | 24534558 | 24534331 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24534647 | 24534730 | 24534647 | ID=MS.gene024280.t1.exon2;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24534647 | 24534730 | 24534647 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24534853 | 24534941 | 24534853 | ID=MS.gene024280.t1.exon3;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24534853 | 24534941 | 24534853 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24535226 | 24535400 | 24535226 | ID=MS.gene024280.t1.exon4;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24535226 | 24535400 | 24535226 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24535545 | 24535664 | 24535545 | ID=MS.gene024280.t1.exon5;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24535545 | 24535664 | 24535545 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24535771 | 24535854 | 24535771 | ID=MS.gene024280.t1.exon6;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24535771 | 24535854 | 24535771 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24535949 | 24536020 | 24535949 | ID=MS.gene024280.t1.exon7;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24535949 | 24536020 | 24535949 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24536326 | 24536439 | 24536326 | ID=MS.gene024280.t1.exon8;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24536326 | 24536439 | 24536326 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24536577 | 24536677 | 24536577 | ID=MS.gene024280.t1.exon9;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24536577 | 24536677 | 24536577 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24537051 | 24537144 | 24537051 | ID=MS.gene024280.t1.exon10;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24537051 | 24537144 | 24537051 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24537257 | 24537424 | 24537257 | ID=MS.gene024280.t1.exon11;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24537257 | 24537424 | 24537257 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24537501 | 24537590 | 24537501 | ID=MS.gene024280.t1.exon12;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24537501 | 24537590 | 24537501 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24537935 | 24538000 | 24537935 | ID=MS.gene024280.t1.exon13;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24537935 | 24538000 | 24537935 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24538126 | 24538182 | 24538126 | ID=MS.gene024280.t1.exon14;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24538126 | 24538182 | 24538126 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24539843 | 24540062 | 24539843 | ID=MS.gene024280.t1.exon15;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24539843 | 24540062 | 24539843 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24540359 | 24540498 | 24540359 | ID=MS.gene024280.t1.exon16;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24540359 | 24540498 | 24540359 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24540668 | 24540736 | 24540668 | ID=MS.gene024280.t1.exon17;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24540668 | 24540736 | 24540668 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24541252 | 24541311 | 24541252 | ID=MS.gene024280.t1.exon18;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24541252 | 24541311 | 24541252 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24541409 | 24541480 | 24541409 | ID=MS.gene024280.t1.exon19;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24541409 | 24541480 | 24541409 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24541664 | 24541711 | 24541664 | ID=MS.gene024280.t1.exon20;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24541664 | 24541711 | 24541664 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24541823 | 24541942 | 24541823 | ID=MS.gene024280.t1.exon21;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24541823 | 24541942 | 24541823 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24542067 | 24542132 | 24542067 | ID=MS.gene024280.t1.exon22;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24542067 | 24542132 | 24542067 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24542463 | 24542575 | 24542463 | ID=MS.gene024280.t1.exon23;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24542463 | 24542575 | 24542463 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
chr7.3 | exon | 24542722 | 24542827 | 24542722 | ID=MS.gene024280.t1.exon24;Parent=MS.gene024280.t1 |
chr7.3 | CDS | 24542722 | 24542827 | 24542722 | ID=cds.MS.gene024280.t1;Parent=MS.gene024280.t1 |
Gene Sequence |
Protein sequence |