Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024513.t1 | XP_004516473.1 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 1.00E-183 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024513.t1 | Q8VXY7 | 65.0 | 408 | 140 | 2 | 10 | 415 | 44 | 450 | 7.3e-143 | 508.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024513.t1 | A0A1S2Z7N2 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 7.2e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036759 | MS.gene024513 | PPI |
| MS.gene62397 | MS.gene024513 | PPI |
| MS.gene59641 | MS.gene024513 | PPI |
| MS.gene036758 | MS.gene024513 | PPI |
| MS.gene59944 | MS.gene024513 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024513.t1 | MTR_0003s0470 | 86.616 | 396 | 51 | 1 | 20 | 415 | 22 | 415 | 0.0 | 695 |
| MS.gene024513.t1 | MTR_3g462280 | 85.783 | 415 | 53 | 3 | 4 | 415 | 12 | 423 | 0.0 | 687 |
| MS.gene024513.t1 | MTR_4g114710 | 47.208 | 394 | 196 | 3 | 24 | 415 | 15 | 398 | 9.33e-115 | 341 |
| MS.gene024513.t1 | MTR_0008s0170 | 32.512 | 406 | 247 | 8 | 28 | 415 | 14 | 410 | 1.09e-57 | 194 |
| MS.gene024513.t1 | MTR_0008s0130 | 32.840 | 405 | 243 | 10 | 30 | 415 | 16 | 410 | 1.84e-55 | 189 |
| MS.gene024513.t1 | MTR_2g011600 | 32.203 | 413 | 237 | 11 | 30 | 415 | 23 | 419 | 2.91e-52 | 181 |
| MS.gene024513.t1 | MTR_4g050990 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene024513.t1 | MTR_2g089520 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene024513.t1 | MTR_2g011580 | 32.558 | 387 | 231 | 9 | 49 | 415 | 2 | 378 | 8.37e-51 | 176 |
| MS.gene024513.t1 | MTR_2g047968 | 33.092 | 414 | 241 | 11 | 24 | 415 | 11 | 410 | 5.88e-50 | 175 |
| MS.gene024513.t1 | MTR_2g011600 | 32.312 | 359 | 204 | 10 | 84 | 415 | 22 | 368 | 1.50e-44 | 159 |
| MS.gene024513.t1 | MTR_1g071120 | 30.606 | 330 | 199 | 8 | 30 | 341 | 58 | 375 | 3.80e-38 | 142 |
| MS.gene024513.t1 | MTR_8g007285 | 29.714 | 350 | 213 | 9 | 92 | 415 | 20 | 362 | 2.42e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024513.t1 | AT1G70330 | 65.865 | 416 | 139 | 2 | 2 | 415 | 36 | 450 | 0.0 | 537 |
| MS.gene024513.t1 | AT1G02630 | 47.704 | 392 | 189 | 5 | 24 | 415 | 14 | 389 | 7.47e-122 | 359 |
| MS.gene024513.t1 | AT1G02630 | 40.816 | 392 | 172 | 6 | 24 | 415 | 14 | 345 | 1.62e-91 | 280 |
| MS.gene024513.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene024513.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene024513.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene024513.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene024513.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 8.06e-48 | 169 |
| MS.gene024513.t1 | AT4G05130 | 30.175 | 401 | 244 | 11 | 37 | 415 | 26 | 412 | 2.46e-47 | 167 |
| MS.gene024513.t1 | AT1G61630 | 29.684 | 411 | 253 | 9 | 28 | 415 | 15 | 412 | 5.39e-46 | 164 |
| MS.gene024513.t1 | AT4G05140 | 29.238 | 407 | 259 | 10 | 28 | 415 | 17 | 413 | 1.70e-43 | 157 |
| MS.gene024513.t1 | AT3G09990 | 29.383 | 405 | 244 | 9 | 37 | 415 | 25 | 413 | 3.33e-43 | 156 |
Find 102 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGGCTGTTGGGATTTC+AGG | 0.094893 | 7.2:-1686364 | MS.gene024513:CDS |
| GCTCTATTATAGCTTGGTTT+TGG | 0.174004 | 7.2:-1685305 | MS.gene024513:CDS |
| ACACTATTAACGTGTCTCTT+AGG | 0.195857 | 7.2:-1685450 | MS.gene024513:CDS |
| TACACGCAGGCGGTCATTGC+TGG | 0.225351 | 7.2:-1686280 | MS.gene024513:CDS |
| AGTGTGTTCTTCTTAGTTAT+TGG | 0.230173 | 7.2:-1685339 | MS.gene024513:CDS |
| TTCATTATAGTACTTTATAA+TGG | 0.242520 | 7.2:+1685851 | None:intergenic |
| TTGGTGCAGGGATCTATTCT+TGG | 0.258857 | 7.2:-1686328 | MS.gene024513:CDS |
| TGGCTCCGCTGGTGAGTTGC+CGG | 0.294888 | 7.2:-1686308 | MS.gene024513:CDS |
| TTCTTCTACCTTCATGTTCA+AGG | 0.339199 | 7.2:-1686735 | MS.gene024513:CDS |
| ACACATTAAAGCAAGTAATA+AGG | 0.345288 | 7.2:+1685622 | None:intergenic |
| ATCTCTGTCCGGAAGAATTT+CGG | 0.346613 | 7.2:+1685480 | None:intergenic |
| TTAGTTATTGGTCTGGCTGC+TGG | 0.347855 | 7.2:-1685327 | MS.gene024513:CDS |
| AAGCAAGTAATAAGGAGAAT+TGG | 0.349646 | 7.2:+1685630 | None:intergenic |
| ACGTCACTGCTGGGGCTGTT+GGG | 0.361788 | 7.2:-1686372 | MS.gene024513:CDS |
| TACGTCACTGCTGGGGCTGT+TGG | 0.363518 | 7.2:-1686373 | MS.gene024513:CDS |
| CTTGATGTCGTGTATGTTAA+GGG | 0.366056 | 7.2:-1686421 | MS.gene024513:CDS |
| TTTAATGTGTTTGACCTTGT+TGG | 0.367568 | 7.2:-1685609 | MS.gene024513:CDS |
| CTCTGCATGCTGCAACTTCA+CGG | 0.371199 | 7.2:+1685377 | None:intergenic |
| CTATAATGAACTTAAGATTC+AGG | 0.375812 | 7.2:-1685838 | MS.gene024513:CDS |
| TTCAGGTGTGGCTAATGCTT+TGG | 0.388115 | 7.2:-1686347 | MS.gene024513:CDS |
| ATACGGTCAACGCTTGCATC+GGG | 0.388734 | 7.2:+1686586 | None:intergenic |
| TCATTATAGTACTTTATAAT+GGG | 0.388994 | 7.2:+1685852 | None:intergenic |
| ACTCTCAGCTTCTTAAAGAT+TGG | 0.396591 | 7.2:-1685656 | MS.gene024513:CDS |
| ACACGCAGGCGGTCATTGCT+GGG | 0.398252 | 7.2:-1686279 | MS.gene024513:CDS |
| TGCACGGTCCGAAATTCTTC+CGG | 0.401715 | 7.2:-1685488 | MS.gene024513:CDS |
| CTGCTGGCTCTATTATAGCT+TGG | 0.403267 | 7.2:-1685311 | MS.gene024513:CDS |
| GTCGAGTCGGGTTGTATAAC+GGG | 0.404515 | 7.2:-1686399 | MS.gene024513:CDS |
| GTGACGCTTGCAATATTTCC+TGG | 0.410311 | 7.2:-1685699 | MS.gene024513:CDS |
| GGGTGCTTGTTTCTTTCCTA+AGG | 0.415931 | 7.2:-1686001 | MS.gene024513:CDS |
| CACTATTAACGTGTCTCTTA+GGG | 0.428475 | 7.2:-1685449 | MS.gene024513:CDS |
| GTTCTTCTTAGTTATTGGTC+TGG | 0.429994 | 7.2:-1685334 | MS.gene024513:CDS |
| CTGTCTGGAGATCAACTGTA+TGG | 0.434174 | 7.2:-1685776 | MS.gene024513:CDS |
| GGTCGAGTCGGGTTGTATAA+CGG | 0.441509 | 7.2:-1686400 | MS.gene024513:CDS |
| GCTTGATGTCGTGTATGTTA+AGG | 0.447841 | 7.2:-1686422 | MS.gene024513:CDS |
| GTCCTTTGACAGTATCTGTC+TGG | 0.460668 | 7.2:-1685791 | MS.gene024513:CDS |
| GCATCGGCTATTTGTTCCCA+TGG | 0.462726 | 7.2:-1686651 | MS.gene024513:CDS |
| CAACGCTTGCATCGGGGTAA+AGG | 0.467006 | 7.2:+1686593 | None:intergenic |
| ATACCACTTGATTGTTCCTA+AGG | 0.474334 | 7.2:+1685749 | None:intergenic |
| GGATCTATTCTTGGCTCCGC+TGG | 0.479504 | 7.2:-1686319 | MS.gene024513:CDS |
| TGTGGCTAATGCTTTGGTGC+AGG | 0.485275 | 7.2:-1686341 | MS.gene024513:CDS |
| CACGCAGGCGGTCATTGCTG+GGG | 0.489338 | 7.2:-1686278 | MS.gene024513:CDS |
| AGAAAGTAGCAGAAGACAAA+TGG | 0.493821 | 7.2:-1686705 | MS.gene024513:CDS |
| TTAGGAACAATCAAGTGGTA+TGG | 0.496112 | 7.2:-1685747 | MS.gene024513:CDS |
| ACCATTGTCGTCTTCAACGG+CGG | 0.502286 | 7.2:+1685812 | None:intergenic |
| GTTTACACGCAAGATGCCTC+TGG | 0.510856 | 7.2:-1685963 | MS.gene024513:CDS |
| TTGCAGCATGCAGAGACTGC+GGG | 0.517119 | 7.2:-1685369 | MS.gene024513:CDS |
| TGTCTCTTAGGGCTTACAAA+TGG | 0.520478 | 7.2:-1685438 | MS.gene024513:CDS |
| TGCAAGCATCCTAAGAAGAG+AGG | 0.520652 | 7.2:+1685507 | None:intergenic |
| AATGAGATTTGTGTCGGTTG+AGG | 0.521136 | 7.2:+1686506 | None:intergenic |
| CTCTTCTTAGGATGCTTGCA+CGG | 0.521892 | 7.2:-1685504 | MS.gene024513:CDS |
| TGTATGTTAAGGGTCGAGTC+GGG | 0.521957 | 7.2:-1686411 | MS.gene024513:CDS |
| ACAATCAAGTGGTATGGGCT+CGG | 0.529311 | 7.2:-1685741 | MS.gene024513:CDS |
| ACCGCCTGCGTGTACCTCTC+CGG | 0.532675 | 7.2:+1686289 | None:intergenic |
| GGCTGTTGGGATTTCAGGTG+TGG | 0.535654 | 7.2:-1686359 | MS.gene024513:CDS |
| AAATCATCAATACACTGGTA+AGG | 0.536010 | 7.2:+1685412 | None:intergenic |
| TCAACTGTATGGGATACCTT+AGG | 0.538806 | 7.2:-1685765 | MS.gene024513:CDS |
| TGTGATTATGTTCATATGCA+TGG | 0.539930 | 7.2:-1685901 | MS.gene024513:CDS |
| GATACGGTCAACGCTTGCAT+CGG | 0.540085 | 7.2:+1686585 | None:intergenic |
| GTGTATGTTAAGGGTCGAGT+CGG | 0.540507 | 7.2:-1686412 | MS.gene024513:CDS |
| ATCTACTTCACACTTGGCAT+CGG | 0.551559 | 7.2:-1686667 | MS.gene024513:CDS |
| TTTGTCGTCCTTGAACATGA+AGG | 0.552481 | 7.2:+1686727 | None:intergenic |
| TAGGAACAATCAAGTGGTAT+GGG | 0.556979 | 7.2:-1685746 | MS.gene024513:CDS |
| GTGGCTAATGCTTTGGTGCA+GGG | 0.564289 | 7.2:-1686340 | MS.gene024513:CDS |
| AGACACGTTAATAGTGTCAC+AGG | 0.565534 | 7.2:+1685456 | None:intergenic |
| AGGACCATTGTCGTCTTCAA+CGG | 0.572794 | 7.2:+1685809 | None:intergenic |
| AACATACACGACATCAAGCA+AGG | 0.573774 | 7.2:+1686426 | None:intergenic |
| GTGTCACAGGAATCTCTGTC+CGG | 0.575678 | 7.2:+1685469 | None:intergenic |
| AGCTAAAATCATCAATACAC+TGG | 0.598738 | 7.2:+1685407 | None:intergenic |
| TGCAAAGTAGAGCAAAGATA+CGG | 0.603721 | 7.2:+1686569 | None:intergenic |
| ACATCTTCTGTAATGTAACC+AGG | 0.604109 | 7.2:+1685681 | None:intergenic |
| ACGCAGGCGGTCATTGCTGG+GGG | 0.609305 | 7.2:-1686277 | MS.gene024513:CDS |
| TATATAATCTACTTCACACT+TGG | 0.609971 | 7.2:-1686673 | MS.gene024513:CDS |
| GTTGCAGCATGCAGAGACTG+CGG | 0.611240 | 7.2:-1685370 | MS.gene024513:CDS |
| AGGTAGAAGAAGAACAATGG+TGG | 0.611992 | 7.2:+1686747 | None:intergenic |
| CTGTGATGAATGCGTTCCAT+GGG | 0.612636 | 7.2:+1686635 | None:intergenic |
| TGTCTGGAGATCAACTGTAT+GGG | 0.613864 | 7.2:-1685775 | MS.gene024513:CDS |
| GCAAGCATCCTAAGAAGAGA+GGG | 0.616215 | 7.2:+1685508 | None:intergenic |
| GCTGTGATGAATGCGTTCCA+TGG | 0.616389 | 7.2:+1686634 | None:intergenic |
| CGTGGGAATGAGATTTGTGT+CGG | 0.618153 | 7.2:+1686500 | None:intergenic |
| CCGCTGGTGAGTTGCCGGAG+AGG | 0.619123 | 7.2:-1686303 | MS.gene024513:CDS |
| AATCTTTAAGAAGCTGAGAG+TGG | 0.626615 | 7.2:+1685658 | None:intergenic |
| CTCCAGACAGATACTGTCAA+AGG | 0.635770 | 7.2:+1685789 | None:intergenic |
| AAGCAAGGGAACTATGAGGA+GGG | 0.636359 | 7.2:+1686441 | None:intergenic |
| ATCCAACGTTGATCCTCACG+TGG | 0.642546 | 7.2:+1686482 | None:intergenic |
| CCTCTCCGGCAACTCACCAG+CGG | 0.643402 | 7.2:+1686303 | None:intergenic |
| AAGGTAAGAGAAGTAATCAA+CGG | 0.645014 | 7.2:+1686612 | None:intergenic |
| CAAGCAAGGGAACTATGAGG+AGG | 0.646036 | 7.2:+1686440 | None:intergenic |
| CATCAAGCAAGGGAACTATG+AGG | 0.650180 | 7.2:+1686437 | None:intergenic |
| GCCGGAGAGGTACACGCAGG+CGG | 0.656282 | 7.2:-1686290 | MS.gene024513:CDS |
| ACATACACGACATCAAGCAA+GGG | 0.657824 | 7.2:+1686427 | None:intergenic |
| TCCCACGTGAGGATCAACGT+TGG | 0.661083 | 7.2:-1686484 | MS.gene024513:CDS |
| TGAAGGTAGAAGAAGAACAA+TGG | 0.668431 | 7.2:+1686744 | None:intergenic |
| ACAAATCTCATTCCCACGTG+AGG | 0.669174 | 7.2:-1686495 | MS.gene024513:CDS |
| TGCAGCATGCAGAGACTGCG+GGG | 0.670996 | 7.2:-1685368 | MS.gene024513:CDS |
| TACGGTCAACGCTTGCATCG+GGG | 0.672941 | 7.2:+1686587 | None:intergenic |
| ATACCTTAGGAACAATCAAG+TGG | 0.685947 | 7.2:-1685752 | MS.gene024513:CDS |
| GGTTGAGGATGATGATGATG+AGG | 0.690333 | 7.2:+1686521 | None:intergenic |
| GCCGCCGTTGAAGACGACAA+TGG | 0.692231 | 7.2:-1685813 | MS.gene024513:CDS |
| TAATGAACTTAAGATTCAGG+CGG | 0.703355 | 7.2:-1685835 | MS.gene024513:CDS |
| TCCAACGTTGATCCTCACGT+GGG | 0.722026 | 7.2:+1686483 | None:intergenic |
| GTTGCCGGAGAGGTACACGC+AGG | 0.746866 | 7.2:-1686293 | MS.gene024513:CDS |
| CTAGAAGGTATACTGCAGTG+AGG | 0.762315 | 7.2:+1685580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATAGTACTTTATAAT+GGG | + | chr7.2:1686210-1686229 | None:intergenic | 15.0% |
| !! | TTCATTATAGTACTTTATAA+TGG | + | chr7.2:1686211-1686230 | None:intergenic | 15.0% |
| !! | AATAAAACATGATATGAGAA+TGG | + | chr7.2:1685897-1685916 | None:intergenic | 20.0% |
| !! | ATAAAACATGATATGAGAAT+GGG | + | chr7.2:1685896-1685915 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAAAAAGAAGA+AGG | + | chr7.2:1685830-1685849 | None:intergenic | 20.0% |
| ! | ACACATTAAAGCAAGTAATA+AGG | + | chr7.2:1686440-1686459 | None:intergenic | 25.0% |
| ! | CTATAATGAACTTAAGATTC+AGG | - | chr7.2:1686221-1686240 | MS.gene024513:intron | 25.0% |
| ! | TATATAATCTACTTCACACT+TGG | - | chr7.2:1685386-1685405 | MS.gene024513:CDS | 25.0% |
| ! | TGAATGGAAAATAATGTGTA+AGG | - | chr7.2:1685968-1685987 | MS.gene024513:CDS | 25.0% |
| !! | GTAAATGGTTTTTCATTTCA+GGG | - | chr7.2:1686037-1686056 | MS.gene024513:intron | 25.0% |
| !! | TAAATGGTTTTTCATTTCAG+GGG | - | chr7.2:1686038-1686057 | MS.gene024513:intron | 25.0% |
| !!! | TTTTTTTCTTTCCCTACTTT+TGG | - | chr7.2:1685838-1685857 | MS.gene024513:CDS | 25.0% |
| AAATCATCAATACACTGGTA+AGG | + | chr7.2:1686650-1686669 | None:intergenic | 30.0% | |
| AAGCAAGTAATAAGGAGAAT+TGG | + | chr7.2:1686432-1686451 | None:intergenic | 30.0% | |
| AAGGTAAGAGAAGTAATCAA+CGG | + | chr7.2:1685450-1685469 | None:intergenic | 30.0% | |
| AGCTAAAATCATCAATACAC+TGG | + | chr7.2:1686655-1686674 | None:intergenic | 30.0% | |
| AGTGTGTTCTTCTTAGTTAT+TGG | - | chr7.2:1686720-1686739 | MS.gene024513:CDS | 30.0% | |
| GAGAATGCAAAAATTGCAAT+CGG | - | chr7.2:1686501-1686520 | MS.gene024513:CDS | 30.0% | |
| TAATGAACTTAAGATTCAGG+CGG | - | chr7.2:1686224-1686243 | MS.gene024513:intron | 30.0% | |
| TGTGATTATGTTCATATGCA+TGG | - | chr7.2:1686158-1686177 | MS.gene024513:intron | 30.0% | |
| TTTAATGTGTTTGACCTTGT+TGG | - | chr7.2:1686450-1686469 | MS.gene024513:CDS | 30.0% | |
| ! | ATTGCTTGTTTCTTGAACTT+TGG | - | chr7.2:1686010-1686029 | MS.gene024513:intron | 30.0% |
| ! | CAATTTTTGCATTCTCTAGA+AGG | + | chr7.2:1686497-1686516 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATCCTT+AGG | + | chr7.2:1686077-1686096 | None:intergenic | 30.0% |
| ! | GGTAAATGGTTTTTCATTTC+AGG | - | chr7.2:1686036-1686055 | MS.gene024513:intron | 30.0% |
| ! | TTGAACTTTGGAAAGGTAAA+TGG | - | chr7.2:1686022-1686041 | MS.gene024513:intron | 30.0% |
| ! | TTGTTTCTTGAACTTTGGAA+AGG | - | chr7.2:1686015-1686034 | MS.gene024513:intron | 30.0% |
| !! | CTCTATTATAGCTTGGTTTT+GGG | - | chr7.2:1686755-1686774 | MS.gene024513:CDS | 30.0% |
| !!! | AGTTTTTTGTATGCTGGATT+TGG | - | chr7.2:1685942-1685961 | MS.gene024513:CDS | 30.0% |
| !!! | GCAAATAGTTTTTTGTATGC+TGG | - | chr7.2:1685936-1685955 | MS.gene024513:CDS | 30.0% |
| !!! | GTTTTTTGTATGCTGGATTT+GGG | - | chr7.2:1685943-1685962 | MS.gene024513:CDS | 30.0% |
| ACACAACTTCAACCAAAAGT+AGG | + | chr7.2:1685853-1685872 | None:intergenic | 35.0% | |
| ACACTATTAACGTGTCTCTT+AGG | - | chr7.2:1686609-1686628 | MS.gene024513:CDS | 35.0% | |
| ACATCTTCTGTAATGTAACC+AGG | + | chr7.2:1686381-1686400 | None:intergenic | 35.0% | |
| ACTCTCAGCTTCTTAAAGAT+TGG | - | chr7.2:1686403-1686422 | MS.gene024513:CDS | 35.0% | |
| AGAAAGTAGCAGAAGACAAA+TGG | - | chr7.2:1685354-1685373 | MS.gene024513:CDS | 35.0% | |
| ATACCACTTGATTGTTCCTA+AGG | + | chr7.2:1686313-1686332 | None:intergenic | 35.0% | |
| ATACCTTAGGAACAATCAAG+TGG | - | chr7.2:1686307-1686326 | MS.gene024513:CDS | 35.0% | |
| CACAACTTCAACCAAAAGTA+GGG | + | chr7.2:1685852-1685871 | None:intergenic | 35.0% | |
| CACTATTAACGTGTCTCTTA+GGG | - | chr7.2:1686610-1686629 | MS.gene024513:CDS | 35.0% | |
| CTTGATGTCGTGTATGTTAA+GGG | - | chr7.2:1685638-1685657 | MS.gene024513:CDS | 35.0% | |
| GTTCTTCTTAGTTATTGGTC+TGG | - | chr7.2:1686725-1686744 | MS.gene024513:CDS | 35.0% | |
| TAGGAACAATCAAGTGGTAT+GGG | - | chr7.2:1686313-1686332 | MS.gene024513:CDS | 35.0% | |
| TGAAGGTAGAAGAAGAACAA+TGG | + | chr7.2:1685318-1685337 | None:intergenic | 35.0% | |
| TGCAAAGTAGAGCAAAGATA+CGG | + | chr7.2:1685493-1685512 | None:intergenic | 35.0% | |
| TTAGGAACAATCAAGTGGTA+TGG | - | chr7.2:1686312-1686331 | MS.gene024513:CDS | 35.0% | |
| TTCTTCTACCTTCATGTTCA+AGG | - | chr7.2:1685324-1685343 | MS.gene024513:CDS | 35.0% | |
| ! | AATCTTTAAGAAGCTGAGAG+TGG | + | chr7.2:1686404-1686423 | None:intergenic | 35.0% |
| ! | GCTCTATTATAGCTTGGTTT+TGG | - | chr7.2:1686754-1686773 | MS.gene024513:CDS | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr7.2:1686543-1686562 | MS.gene024513:CDS | 35.0% |
| AACATACACGACATCAAGCA+AGG | + | chr7.2:1685636-1685655 | None:intergenic | 40.0% | |
| ACATACACGACATCAAGCAA+GGG | + | chr7.2:1685635-1685654 | None:intergenic | 40.0% | |
| AGACACGTTAATAGTGTCAC+AGG | + | chr7.2:1686606-1686625 | None:intergenic | 40.0% | |
| AGGTAGAAGAAGAACAATGG+TGG | + | chr7.2:1685315-1685334 | None:intergenic | 40.0% | |
| ATCTACTTCACACTTGGCAT+CGG | - | chr7.2:1685392-1685411 | MS.gene024513:CDS | 40.0% | |
| ATCTCTGTCCGGAAGAATTT+CGG | + | chr7.2:1686582-1686601 | None:intergenic | 40.0% | |
| GCTTGATGTCGTGTATGTTA+AGG | - | chr7.2:1685637-1685656 | MS.gene024513:CDS | 40.0% | |
| TCAACTGTATGGGATACCTT+AGG | - | chr7.2:1686294-1686313 | MS.gene024513:CDS | 40.0% | |
| TGTCTCTTAGGGCTTACAAA+TGG | - | chr7.2:1686621-1686640 | MS.gene024513:CDS | 40.0% | |
| TGTCTGGAGATCAACTGTAT+GGG | - | chr7.2:1686284-1686303 | MS.gene024513:CDS | 40.0% | |
| TTTGTCGTCCTTGAACATGA+AGG | + | chr7.2:1685335-1685354 | None:intergenic | 40.0% | |
| ! | AGAGATTAGCACTCTTTTGC+AGG | + | chr7.2:1686122-1686141 | None:intergenic | 40.0% |
| ! | ATGCTGGATTTGGGTTTGAA+TGG | - | chr7.2:1685952-1685971 | MS.gene024513:CDS | 40.0% |
| !! | AATGAGATTTGTGTCGGTTG+AGG | + | chr7.2:1685556-1685575 | None:intergenic | 40.0% |
| AAGCAAGGGAACTATGAGGA+GGG | + | chr7.2:1685621-1685640 | None:intergenic | 45.0% | |
| ACAAATCTCATTCCCACGTG+AGG | - | chr7.2:1685564-1685583 | MS.gene024513:CDS | 45.0% | |
| ACAATCAAGTGGTATGGGCT+CGG | - | chr7.2:1686318-1686337 | MS.gene024513:CDS | 45.0% | |
| AGGACCATTGTCGTCTTCAA+CGG | + | chr7.2:1686253-1686272 | None:intergenic | 45.0% | |
| CATCAAGCAAGGGAACTATG+AGG | + | chr7.2:1685625-1685644 | None:intergenic | 45.0% | |
| CGTGGGAATGAGATTTGTGT+CGG | + | chr7.2:1685562-1685581 | None:intergenic | 45.0% | |
| CTCCAGACAGATACTGTCAA+AGG | + | chr7.2:1686273-1686292 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCTTGCA+CGG | - | chr7.2:1686555-1686574 | MS.gene024513:CDS | 45.0% | |
| CTGTCTGGAGATCAACTGTA+TGG | - | chr7.2:1686283-1686302 | MS.gene024513:CDS | 45.0% | |
| CTGTGATGAATGCGTTCCAT+GGG | + | chr7.2:1685427-1685446 | None:intergenic | 45.0% | |
| GCAAGCATCCTAAGAAGAGA+GGG | + | chr7.2:1686554-1686573 | None:intergenic | 45.0% | |
| GTCCTTTGACAGTATCTGTC+TGG | - | chr7.2:1686268-1686287 | MS.gene024513:CDS | 45.0% | |
| GTGACGCTTGCAATATTTCC+TGG | - | chr7.2:1686360-1686379 | MS.gene024513:CDS | 45.0% | |
| GTGTATGTTAAGGGTCGAGT+CGG | - | chr7.2:1685647-1685666 | MS.gene024513:CDS | 45.0% | |
| TGCAAGCATCCTAAGAAGAG+AGG | + | chr7.2:1686555-1686574 | None:intergenic | 45.0% | |
| TGTATGTTAAGGGTCGAGTC+GGG | - | chr7.2:1685648-1685667 | MS.gene024513:CDS | 45.0% | |
| TTCAGGTGTGGCTAATGCTT+TGG | - | chr7.2:1685712-1685731 | MS.gene024513:CDS | 45.0% | |
| TTGGTGCAGGGATCTATTCT+TGG | - | chr7.2:1685731-1685750 | MS.gene024513:CDS | 45.0% | |
| ! | CTAGAAGGTATACTGCAGTG+AGG | + | chr7.2:1686482-1686501 | None:intergenic | 45.0% |
| ! | GGGTGCTTGTTTCTTTCCTA+AGG | - | chr7.2:1686058-1686077 | MS.gene024513:intron | 45.0% |
| ! | GGTTGAGGATGATGATGATG+AGG | + | chr7.2:1685541-1685560 | None:intergenic | 45.0% |
| ! | TGCTGCAACTTCACGGTTTT+AGG | + | chr7.2:1686678-1686697 | None:intergenic | 45.0% |
| ! | TTAGTTATTGGTCTGGCTGC+TGG | - | chr7.2:1686732-1686751 | MS.gene024513:CDS | 45.0% |
| !! | CTGCTGGCTCTATTATAGCT+TGG | - | chr7.2:1686748-1686767 | MS.gene024513:CDS | 45.0% |
| ACCATTGTCGTCTTCAACGG+CGG | + | chr7.2:1686250-1686269 | None:intergenic | 50.0% | |
| ATACGGTCAACGCTTGCATC+GGG | + | chr7.2:1685476-1685495 | None:intergenic | 50.0% | |
| ATCCAACGTTGATCCTCACG+TGG | + | chr7.2:1685580-1685599 | None:intergenic | 50.0% | |
| CAAGCAAGGGAACTATGAGG+AGG | + | chr7.2:1685622-1685641 | None:intergenic | 50.0% | |
| CTCTGCATGCTGCAACTTCA+CGG | + | chr7.2:1686685-1686704 | None:intergenic | 50.0% | |
| GATACGGTCAACGCTTGCAT+CGG | + | chr7.2:1685477-1685496 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr7.2:1685428-1685447 | None:intergenic | 50.0% | |
| GTGTCACAGGAATCTCTGTC+CGG | + | chr7.2:1686593-1686612 | None:intergenic | 50.0% | |
| GTTTACACGCAAGATGCCTC+TGG | - | chr7.2:1686096-1686115 | MS.gene024513:intron | 50.0% | |
| TCCAACGTTGATCCTCACGT+GGG | + | chr7.2:1685579-1685598 | None:intergenic | 50.0% | |
| TGCACGGTCCGAAATTCTTC+CGG | - | chr7.2:1686571-1686590 | MS.gene024513:CDS | 50.0% | |
| ! | ACGGGTTTTACGTCACTGCT+GGG | - | chr7.2:1685678-1685697 | MS.gene024513:CDS | 50.0% |
| ! | CAGTGAGGCTTTTGCCAACA+AGG | + | chr7.2:1686467-1686486 | None:intergenic | 50.0% |
| ! | GGTCGAGTCGGGTTGTATAA+CGG | - | chr7.2:1685659-1685678 | MS.gene024513:CDS | 50.0% |
| ! | GTCGAGTCGGGTTGTATAAC+GGG | - | chr7.2:1685660-1685679 | MS.gene024513:CDS | 50.0% |
| ! | GTGGCTAATGCTTTGGTGCA+GGG | - | chr7.2:1685719-1685738 | MS.gene024513:CDS | 50.0% |
| ! | TGTGGCTAATGCTTTGGTGC+AGG | - | chr7.2:1685718-1685737 | MS.gene024513:CDS | 50.0% |
| !! | AACGGGTTTTACGTCACTGC+TGG | - | chr7.2:1685677-1685696 | MS.gene024513:CDS | 50.0% |
| !! | GCATCGGCTATTTGTTCCCA+TGG | - | chr7.2:1685408-1685427 | MS.gene024513:CDS | 50.0% |
| CAACGCTTGCATCGGGGTAA+AGG | + | chr7.2:1685469-1685488 | None:intergenic | 55.0% | |
| GGATCTATTCTTGGCTCCGC+TGG | - | chr7.2:1685740-1685759 | MS.gene024513:CDS | 55.0% | |
| GTTGCAGCATGCAGAGACTG+CGG | - | chr7.2:1686689-1686708 | MS.gene024513:CDS | 55.0% | |
| TACGGTCAACGCTTGCATCG+GGG | + | chr7.2:1685475-1685494 | None:intergenic | 55.0% | |
| TCCCACGTGAGGATCAACGT+TGG | - | chr7.2:1685575-1685594 | MS.gene024513:CDS | 55.0% | |
| TTGCAGCATGCAGAGACTGC+GGG | - | chr7.2:1686690-1686709 | MS.gene024513:CDS | 55.0% | |
| ! | AGCACTCTTTTGCAGGCCAG+AGG | + | chr7.2:1686115-1686134 | None:intergenic | 55.0% |
| ! | CGGGTTTTACGTCACTGCTG+GGG | - | chr7.2:1685679-1685698 | MS.gene024513:CDS | 55.0% |
| ! | GGCTGTTGGGATTTCAGGTG+TGG | - | chr7.2:1685700-1685719 | MS.gene024513:CDS | 55.0% |
| ACACGCAGGCGGTCATTGCT+GGG | - | chr7.2:1685780-1685799 | MS.gene024513:CDS | 60.0% | |
| ACGTCACTGCTGGGGCTGTT+GGG | - | chr7.2:1685687-1685706 | MS.gene024513:CDS | 60.0% | |
| GCCGCCGTTGAAGACGACAA+TGG | - | chr7.2:1686246-1686265 | MS.gene024513:intron | 60.0% | |
| GCTGGGGCTGTTGGGATTTC+AGG | - | chr7.2:1685695-1685714 | MS.gene024513:CDS | 60.0% | |
| TACACGCAGGCGGTCATTGC+TGG | - | chr7.2:1685779-1685798 | MS.gene024513:CDS | 60.0% | |
| TACGTCACTGCTGGGGCTGT+TGG | - | chr7.2:1685686-1685705 | MS.gene024513:CDS | 60.0% | |
| TGCAGCATGCAGAGACTGCG+GGG | - | chr7.2:1686691-1686710 | MS.gene024513:CDS | 60.0% | |
| !! | ATTGCTGGGGGTGCTGCTTC+TGG | - | chr7.2:1685794-1685813 | MS.gene024513:CDS | 60.0% |
| ACCGCCTGCGTGTACCTCTC+CGG | + | chr7.2:1685773-1685792 | None:intergenic | 65.0% | |
| ACGCAGGCGGTCATTGCTGG+GGG | - | chr7.2:1685782-1685801 | MS.gene024513:CDS | 65.0% | |
| CACGCAGGCGGTCATTGCTG+GGG | - | chr7.2:1685781-1685800 | MS.gene024513:CDS | 65.0% | |
| CCTCTCCGGCAACTCACCAG+CGG | + | chr7.2:1685759-1685778 | None:intergenic | 65.0% | |
| TGGCTCCGCTGGTGAGTTGC+CGG | - | chr7.2:1685751-1685770 | MS.gene024513:CDS | 65.0% | |
| ! | GTTGCCGGAGAGGTACACGC+AGG | - | chr7.2:1685766-1685785 | MS.gene024513:CDS | 65.0% |
| CCGCTGGTGAGTTGCCGGAG+AGG | - | chr7.2:1685756-1685775 | MS.gene024513:CDS | 70.0% | |
| ! | GCCGGAGAGGTACACGCAGG+CGG | - | chr7.2:1685769-1685788 | MS.gene024513:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 1685296 | 1686785 | 1685296 | ID=MS.gene024513 |
| chr7.2 | mRNA | 1685296 | 1686785 | 1685296 | ID=MS.gene024513.t1;Parent=MS.gene024513 |
| chr7.2 | exon | 1686266 | 1686785 | 1686266 | ID=MS.gene024513.t1.exon1;Parent=MS.gene024513.t1 |
| chr7.2 | CDS | 1686266 | 1686785 | 1686266 | ID=cds.MS.gene024513.t1;Parent=MS.gene024513.t1 |
| chr7.2 | exon | 1685296 | 1686023 | 1685296 | ID=MS.gene024513.t1.exon2;Parent=MS.gene024513.t1 |
| chr7.2 | CDS | 1685296 | 1686023 | 1685296 | ID=cds.MS.gene024513.t1;Parent=MS.gene024513.t1 |
| Gene Sequence |
| Protein sequence |
