Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036759.t1 | XP_003609351.1 | 99 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036759.t1 | Q84XI3 | 63.5 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 2.4e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036759.t1 | G7JE40 | 99.0 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08114 | MS.gene036759 | PPI |
| MS.gene036759 | MS.gene024513 | PPI |
| MS.gene036759 | MS.gene05630 | PPI |
| MS.gene050575 | MS.gene036759 | PPI |
| MS.gene025499 | MS.gene036759 | PPI |
| MS.gene036759 | MS.gene22871 | PPI |
| MS.gene35851 | MS.gene036759 | PPI |
| MS.gene036759 | MS.gene025979 | PPI |
| MS.gene34608 | MS.gene036759 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036759.t1 | MTR_4g114710 | 98.995 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 0.0 | 803 |
| MS.gene036759.t1 | MTR_0003s0470 | 49.239 | 394 | 186 | 4 | 15 | 398 | 26 | 415 | 3.02e-127 | 373 |
| MS.gene036759.t1 | MTR_3g462280 | 45.700 | 407 | 202 | 7 | 7 | 398 | 21 | 423 | 6.63e-114 | 339 |
| MS.gene036759.t1 | MTR_0008s0170 | 27.660 | 423 | 263 | 7 | 6 | 398 | 1 | 410 | 7.95e-49 | 171 |
| MS.gene036759.t1 | MTR_0008s0130 | 28.372 | 430 | 251 | 10 | 6 | 398 | 1 | 410 | 4.86e-47 | 166 |
| MS.gene036759.t1 | MTR_4g050990 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene036759.t1 | MTR_2g089520 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene036759.t1 | MTR_2g011600 | 28.671 | 429 | 250 | 12 | 7 | 398 | 10 | 419 | 1.58e-45 | 162 |
| MS.gene036759.t1 | MTR_2g047968 | 29.604 | 429 | 242 | 13 | 8 | 398 | 4 | 410 | 1.96e-41 | 152 |
| MS.gene036759.t1 | MTR_2g011580 | 27.763 | 389 | 239 | 9 | 40 | 398 | 2 | 378 | 8.40e-40 | 146 |
| MS.gene036759.t1 | MTR_2g011600 | 29.132 | 357 | 196 | 10 | 81 | 398 | 30 | 368 | 2.08e-35 | 134 |
| MS.gene036759.t1 | MTR_1g071120 | 27.616 | 344 | 199 | 9 | 13 | 324 | 50 | 375 | 1.09e-32 | 127 |
| MS.gene036759.t1 | MTR_8g007285 | 26.075 | 372 | 230 | 10 | 57 | 396 | 2 | 360 | 3.05e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036759.t1 | AT1G02630 | 63.520 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 1.52e-178 | 502 |
| MS.gene036759.t1 | AT1G02630 | 55.867 | 392 | 115 | 6 | 10 | 398 | 9 | 345 | 9.44e-146 | 417 |
| MS.gene036759.t1 | AT1G70330 | 49.114 | 395 | 186 | 4 | 16 | 398 | 59 | 450 | 3.93e-123 | 364 |
| MS.gene036759.t1 | AT3G09990 | 28.193 | 415 | 242 | 12 | 21 | 398 | 18 | 413 | 7.89e-44 | 157 |
| MS.gene036759.t1 | AT1G61630 | 27.378 | 431 | 249 | 9 | 9 | 398 | 5 | 412 | 5.81e-43 | 155 |
| MS.gene036759.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene036759.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene036759.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene036759.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene036759.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 2.72e-41 | 151 |
| MS.gene036759.t1 | AT4G05130 | 27.791 | 421 | 253 | 12 | 11 | 398 | 10 | 412 | 1.72e-40 | 149 |
| MS.gene036759.t1 | AT4G05140 | 26.744 | 430 | 259 | 12 | 5 | 398 | 4 | 413 | 5.83e-38 | 142 |
Find 93 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGGGACCAGCTTT+TGG | 0.257914 | 8.1:+11796420 | MS.gene036759:CDS |
| TTATAATTTAGCTGATCTTA+TGG | 0.261483 | 8.1:+11796551 | MS.gene036759:CDS |
| TGCAGTGGCAGGGAAAATTA+AGG | 0.277433 | 8.1:+11796407 | MS.gene036759:CDS |
| GTTCTGTCCTAGGTTGGTTC+TGG | 0.300139 | 8.1:+11796856 | MS.gene036759:CDS |
| TCTTGAATCCAAGGCTCTTA+AGG | 0.316097 | 8.1:+11796500 | MS.gene036759:CDS |
| TAAACTGTAATCAATATAAT+AGG | 0.319839 | 8.1:-11796531 | None:intergenic |
| ACAGCTTGCATATACTGTTT+TGG | 0.330078 | 8.1:-11794937 | None:intergenic |
| TATAATTTAGCTGATCTTAT+GGG | 0.341304 | 8.1:+11796552 | MS.gene036759:CDS |
| TACATAATCCATTTCTTGCT+TGG | 0.351729 | 8.1:+11794547 | MS.gene036759:CDS |
| CAGGAGAGTCCCTTATGTTC+AGG | 0.355351 | 8.1:+11796372 | MS.gene036759:CDS |
| GTATCATCAGAGTGTACTTC+AGG | 0.361010 | 8.1:+11796353 | MS.gene036759:CDS |
| ATCACTTGATGCTAGCTTAA+CGG | 0.372314 | 8.1:-11794491 | None:intergenic |
| TGGTAGCTCCTGTCATTGAT+TGG | 0.376095 | 8.1:+11794785 | MS.gene036759:CDS |
| GAGAGGCCAAGTGGTGCTTA+TGG | 0.382783 | 8.1:+11794832 | MS.gene036759:CDS |
| TTGGTTGGTGGTTCTGTCCT+AGG | 0.383076 | 8.1:+11796846 | MS.gene036759:CDS |
| AAACTTTGTCCCTGAACATA+AGG | 0.390189 | 8.1:-11796382 | None:intergenic |
| TGATGATACTGCTGCATGAT+AGG | 0.394711 | 8.1:-11796339 | None:intergenic |
| CGCGTTCCTCGGATTCGGCT+TGG | 0.397450 | 8.1:+11796827 | MS.gene036759:CDS |
| TTTGTCTTCATGGACCAAAT+TGG | 0.398789 | 8.1:+11796667 | MS.gene036759:CDS |
| ACCTTCTCAATGTGGTTAGT+TGG | 0.405196 | 8.1:-11794634 | None:intergenic |
| TTCCTGCTCCAAGCAAGAAA+TGG | 0.405518 | 8.1:-11794555 | None:intergenic |
| CTCGGATTCGGCTTGGTTGG+TGG | 0.408001 | 8.1:+11796834 | MS.gene036759:CDS |
| TTGAGACCCTTTGGGGTTTG+AGG | 0.410939 | 8.1:-11796234 | None:intergenic |
| TCTTGCTGTGGCAGCACCTA+TGG | 0.413596 | 8.1:-11796619 | None:intergenic |
| AAGTGCTCACTTGTACTTCA+TGG | 0.413740 | 8.1:+11796260 | MS.gene036759:CDS |
| ATCCATTTCTTGCTTGGAGC+AGG | 0.419667 | 8.1:+11794553 | MS.gene036759:CDS |
| ATGACCGCGTTCCTCGGATT+CGG | 0.421562 | 8.1:+11796822 | MS.gene036759:CDS |
| ATGTTCCACAATGTATCAAA+AGG | 0.427242 | 8.1:+11796595 | MS.gene036759:CDS |
| TTGGTTGGTGGAAGTTTGAT+AGG | 0.433123 | 8.1:+11794898 | MS.gene036759:CDS |
| ACTTCTTGCGATGATGAGTT+GGG | 0.436575 | 8.1:+11794693 | MS.gene036759:CDS |
| TTTGCTGGAACTGCTTCCTC+AGG | 0.440158 | 8.1:+11794961 | MS.gene036759:CDS |
| ATACCAATCCTTAAGAGCCT+TGG | 0.444568 | 8.1:-11796508 | None:intergenic |
| GAGCAGGAAACTTGCTACCT+TGG | 0.445287 | 8.1:+11794569 | MS.gene036759:CDS |
| TACTTCTTGCGATGATGAGT+TGG | 0.445586 | 8.1:+11794692 | MS.gene036759:CDS |
| AGATCTTCAGCAATAAATCC+TGG | 0.450755 | 8.1:-11796480 | None:intergenic |
| GGTAGCTCCTGTCATTGATT+GGG | 0.452656 | 8.1:+11794786 | MS.gene036759:CDS |
| GCAACATAGGAGGAAAACTA+TGG | 0.455079 | 8.1:-11796286 | None:intergenic |
| ATTGTTCTTACATTTCTGCT+TGG | 0.455315 | 8.1:+11796711 | MS.gene036759:CDS |
| ATTGTGATGACCGCGTTCCT+CGG | 0.461564 | 8.1:+11796816 | MS.gene036759:CDS |
| AATGTTTGTTATGTCTCTCA+TGG | 0.465994 | 8.1:+11794765 | MS.gene036759:CDS |
| CTGAGGTTGCGAATGAACTT+AGG | 0.472940 | 8.1:+11794736 | MS.gene036759:CDS |
| GGTTTGAGGTAGTGATGCTT+TGG | 0.473253 | 8.1:-11796220 | None:intergenic |
| AGGAGAGTCCCTTATGTTCA+GGG | 0.476690 | 8.1:+11796373 | MS.gene036759:CDS |
| CGATGATGAGTTGGGGAGGT+TGG | 0.479957 | 8.1:+11794701 | MS.gene036759:CDS |
| CATTGATTGGGCCTCGAGTA+GGG | 0.484656 | 8.1:+11794798 | MS.gene036759:CDS |
| TCTGAGAAATGCACTGACTT+AGG | 0.485958 | 8.1:-11796777 | None:intergenic |
| AGAAATGTAAGAACAATCAT+TGG | 0.487588 | 8.1:-11796705 | None:intergenic |
| TCATTGATTGGGCCTCGAGT+AGG | 0.493347 | 8.1:+11794797 | MS.gene036759:CDS |
| TAAGCGTCTCTTGTTTCGCT+CGG | 0.504224 | 8.1:-11794514 | None:intergenic |
| TTCCTCGGATTCGGCTTGGT+TGG | 0.504238 | 8.1:+11796831 | MS.gene036759:CDS |
| TGCTGAAGATCTTGAATCCA+AGG | 0.504556 | 8.1:+11796491 | MS.gene036759:CDS |
| AATCCAAGGCTCTTAAGGAT+TGG | 0.505326 | 8.1:+11796505 | MS.gene036759:CDS |
| ATTATGAATATTCCAAAAGC+TGG | 0.509136 | 8.1:-11796432 | None:intergenic |
| GTTGCAGCTGTTGTAATATG+TGG | 0.509743 | 8.1:+11794862 | MS.gene036759:CDS |
| GGTTTAGCAGATGGCTTGGT+TGG | 0.510374 | 8.1:+11794883 | MS.gene036759:CDS |
| GCAGTGGCAGGGAAAATTAA+GGG | 0.512760 | 8.1:+11796408 | MS.gene036759:CDS |
| AACTTTGTCCCTGAACATAA+GGG | 0.516896 | 8.1:-11796381 | None:intergenic |
| GTATTATAATTTCAATCTTG+AGG | 0.517953 | 8.1:+11796190 | MS.gene036759:CDS |
| GTTGGTTCTGGATACTGTGA+AGG | 0.522252 | 8.1:+11796868 | MS.gene036759:CDS |
| TTGGTGGTTCTGTCCTAGGT+TGG | 0.528954 | 8.1:+11796850 | MS.gene036759:CDS |
| TTAGCAGATGGCTTGGTTGG+TGG | 0.535563 | 8.1:+11794886 | MS.gene036759:CDS |
| AACACTAGTAAGATATCCAT+TGG | 0.535884 | 8.1:-11796739 | None:intergenic |
| TCACTACCTCAAACCCCAAA+GGG | 0.535947 | 8.1:+11796228 | MS.gene036759:CDS |
| TTTCTGCTTGGATTTACCAA+TGG | 0.538009 | 8.1:+11796723 | MS.gene036759:CDS |
| GGAAGTTTGATAGGATCAGC+AGG | 0.544382 | 8.1:+11794907 | MS.gene036759:CDS |
| CAATGTATCAAAAGGGCCAT+AGG | 0.548021 | 8.1:+11796603 | MS.gene036759:CDS |
| CTCGAGGCCCAATCAATGAC+AGG | 0.549987 | 8.1:-11794793 | None:intergenic |
| ATAATTTAGCTGATCTTATG+GGG | 0.556528 | 8.1:+11796553 | MS.gene036759:CDS |
| TGTTCCACAATGTATCAAAA+GGG | 0.559037 | 8.1:+11796596 | MS.gene036759:CDS |
| GTAATATGTGGTTTAGCAGA+TGG | 0.566070 | 8.1:+11794874 | MS.gene036759:CDS |
| TGCTAAAGACAATGCAACAT+AGG | 0.569551 | 8.1:-11796299 | None:intergenic |
| GATCTTCAGCAATAAATCCT+GGG | 0.574505 | 8.1:-11796479 | None:intergenic |
| ATGTGGTTTAGCAGATGGCT+TGG | 0.575031 | 8.1:+11794879 | MS.gene036759:CDS |
| GTAACTCTATCTATCTTCCC+AGG | 0.575256 | 8.1:+11796462 | MS.gene036759:CDS |
| ACCTTGGAATGCATTTATCA+CGG | 0.589722 | 8.1:+11794585 | MS.gene036759:CDS |
| TAAAGACAATGCAACATAGG+AGG | 0.600160 | 8.1:-11796296 | None:intergenic |
| CACCAACCAAGCCGAATCCG+AGG | 0.600577 | 8.1:-11796833 | None:intergenic |
| TCCAACTAACCACATTGAGA+AGG | 0.605730 | 8.1:+11794633 | MS.gene036759:CDS |
| ATCACTACCTCAAACCCCAA+AGG | 0.611165 | 8.1:+11796227 | MS.gene036759:CDS |
| GTCATGCCATAAGCACCACT+TGG | 0.614144 | 8.1:-11794838 | None:intergenic |
| ACAGTATCCAGAACCAACCT+AGG | 0.614984 | 8.1:-11796863 | None:intergenic |
| CTTGCGATGATGAGTTGGGG+AGG | 0.619198 | 8.1:+11794697 | MS.gene036759:CDS |
| TTTCATCTCGTCCCTACTCG+AGG | 0.623295 | 8.1:-11794809 | None:intergenic |
| GTTTGATAGGATCAGCAGGA+AGG | 0.624638 | 8.1:+11794911 | MS.gene036759:CDS |
| GCCGTGATAAATGCATTCCA+AGG | 0.626474 | 8.1:-11794586 | None:intergenic |
| GTAGGGACGAGATGAAAGAG+AGG | 0.629913 | 8.1:+11794815 | MS.gene036759:CDS |
| ATAGAATAATAGTCTTGCTG+TGG | 0.649512 | 8.1:-11796631 | None:intergenic |
| CTTCTTGCGATGATGAGTTG+GGG | 0.656503 | 8.1:+11794694 | MS.gene036759:CDS |
| CAGCGAAAACCTTCTCAATG+TGG | 0.674870 | 8.1:-11794642 | None:intergenic |
| TGCTCACTTGTACTTCATGG+TGG | 0.701698 | 8.1:+11796263 | MS.gene036759:CDS |
| CAAGCCGAATCCGAGGAACG+CGG | 0.703497 | 8.1:-11796826 | None:intergenic |
| GAGATGAAAGAGAGGCCAAG+TGG | 0.710667 | 8.1:+11794823 | MS.gene036759:CDS |
| GTTGGAGTAAAACAACACTG+AGG | 0.825176 | 8.1:+11794719 | MS.gene036759:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACATATATATTAAAATT+GGG | + | chr8.1:11795915-11795934 | MS.gene036759:intron | 10.0% |
| !! | TACAACATATATATTAAAAT+TGG | + | chr8.1:11795914-11795933 | MS.gene036759:intron | 10.0% |
| !! | ATCAAGACAATTAAATTAAA+AGG | + | chr8.1:11795978-11795997 | MS.gene036759:intron | 15.0% |
| !! | TAAACTGTAATCAATATAAT+AGG | - | chr8.1:11796534-11796553 | None:intergenic | 15.0% |
| !! | TAAATCTATACCATAATTTA+TGG | + | chr8.1:11795826-11795845 | MS.gene036759:intron | 15.0% |
| !!! | TAAATTTTTTGTTACAATGA+CGG | - | chr8.1:11795557-11795576 | None:intergenic | 15.0% |
| !!! | TTTTAGATAGTAATGTAAAA+AGG | - | chr8.1:11795043-11795062 | None:intergenic | 15.0% |
| !!! | TTTTCCAAATTTCATTTTAA+AGG | + | chr8.1:11795889-11795908 | MS.gene036759:intron | 15.0% |
| !! | AAATTAGTTGCCATAAATTA+TGG | - | chr8.1:11795839-11795858 | None:intergenic | 20.0% |
| !! | ATTCATGTATAAATTCAAGT+GGG | - | chr8.1:11795505-11795524 | None:intergenic | 20.0% |
| !! | ATTTAACAACATTTCTAACT+AGG | - | chr8.1:11795103-11795122 | None:intergenic | 20.0% |
| !! | GTATTATAATTTCAATCTTG+AGG | + | chr8.1:11796190-11796209 | MS.gene036759:CDS | 20.0% |
| !! | TATAATTTAGCTGATCTTAT+GGG | + | chr8.1:11796552-11796571 | MS.gene036759:CDS | 20.0% |
| !! | TATTCATGTATAAATTCAAG+TGG | - | chr8.1:11795506-11795525 | None:intergenic | 20.0% |
| !! | TTATAATTTAGCTGATCTTA+TGG | + | chr8.1:11796551-11796570 | MS.gene036759:CDS | 20.0% |
| !!! | TATGCCTTTAAAATGAAATT+TGG | - | chr8.1:11795896-11795915 | None:intergenic | 20.0% |
| !!! | TCATATTATAATACCTTTTG+TGG | + | chr8.1:11796160-11796179 | MS.gene036759:intron | 20.0% |
| ! | AAGTATATACAAGCATTTGA+AGG | + | chr8.1:11795331-11795350 | MS.gene036759:intron | 25.0% |
| ! | AGAAATGTAAGAACAATCAT+TGG | - | chr8.1:11796708-11796727 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATCAACTATG+AGG | - | chr8.1:11795018-11795037 | None:intergenic | 25.0% |
| ! | ATAAAATACTCATTGTCGTA+TGG | - | chr8.1:11795305-11795324 | None:intergenic | 25.0% |
| ! | ATAATTTAGCTGATCTTATG+GGG | + | chr8.1:11796553-11796572 | MS.gene036759:CDS | 25.0% |
| ! | ATTATGAATATTCCAAAAGC+TGG | - | chr8.1:11796435-11796454 | None:intergenic | 25.0% |
| ! | GTAAAATTGATCAACTATGA+GGG | - | chr8.1:11795017-11795036 | None:intergenic | 25.0% |
| ! | TGAAGACAAACTATAAAAAG+TGG | - | chr8.1:11796657-11796676 | None:intergenic | 25.0% |
| !!! | CTTTTTATAGTTTGTCTTCA+TGG | + | chr8.1:11796657-11796676 | MS.gene036759:CDS | 25.0% |
| !!! | GCATTTGTCTTTTTTTCTAA+AGG | + | chr8.1:11795417-11795436 | MS.gene036759:intron | 25.0% |
| !!! | TGTCTTTTTTTCTAAAGGAT+GGG | + | chr8.1:11795422-11795441 | MS.gene036759:intron | 25.0% |
| !!! | TTGTCTTTTTTTCTAAAGGA+TGG | + | chr8.1:11795421-11795440 | MS.gene036759:intron | 25.0% |
| AAAAACTTTGCCTTAGATGA+AGG | + | chr8.1:11795254-11795273 | MS.gene036759:intron | 30.0% | |
| AACACTAGTAAGATATCCAT+TGG | - | chr8.1:11796742-11796761 | None:intergenic | 30.0% | |
| ATACAAGCATTTGAAGGTTA+AGG | + | chr8.1:11795337-11795356 | MS.gene036759:intron | 30.0% | |
| ATGTTCCACAATGTATCAAA+AGG | + | chr8.1:11796595-11796614 | MS.gene036759:CDS | 30.0% | |
| ATTGTTCTTACATTTCTGCT+TGG | + | chr8.1:11796711-11796730 | MS.gene036759:CDS | 30.0% | |
| CCTTATTCGAACAAATTCTA+AGG | + | chr8.1:11795225-11795244 | MS.gene036759:intron | 30.0% | |
| TACAAGCATTTGAAGGTTAA+GGG | + | chr8.1:11795338-11795357 | MS.gene036759:intron | 30.0% | |
| TACATAATCCATTTCTTGCT+TGG | + | chr8.1:11794547-11794566 | MS.gene036759:CDS | 30.0% | |
| TGTTCCACAATGTATCAAAA+GGG | + | chr8.1:11796596-11796615 | MS.gene036759:CDS | 30.0% | |
| TTTCATGTATCCTTCATCTA+AGG | - | chr8.1:11795267-11795286 | None:intergenic | 30.0% | |
| ! | ACTTCTGTTTTCAACCAATT+TGG | - | chr8.1:11796684-11796703 | None:intergenic | 30.0% |
| ! | ATAGAATAATAGTCTTGCTG+TGG | - | chr8.1:11796634-11796653 | None:intergenic | 30.0% |
| ! | CCTTAGAATTTGTTCGAATA+AGG | - | chr8.1:11795228-11795247 | None:intergenic | 30.0% |
| ! | CTATCTAAAACAATGTCCTT+AGG | + | chr8.1:11795053-11795072 | MS.gene036759:intron | 30.0% |
| ! | TTGTGTTGTAATTTTACCTG+AGG | - | chr8.1:11794980-11794999 | None:intergenic | 30.0% |
| ! | TTTGCTAGGTTATAGTTTGT+AGG | + | chr8.1:11795718-11795737 | MS.gene036759:intron | 30.0% |
| !! | AATGTTTGTTATGTCTCTCA+TGG | + | chr8.1:11794765-11794784 | MS.gene036759:CDS | 30.0% |
| !! | CATAGTTTTGCTAGATGTAT+AGG | - | chr8.1:11795639-11795658 | None:intergenic | 30.0% |
| !!! | CTTAAAGAATTTTGAAGCTG+TGG | + | chr8.1:11795669-11795688 | MS.gene036759:intron | 30.0% |
| !!! | GTCTTTTTTTCTAAAGGATG+GGG | + | chr8.1:11795423-11795442 | MS.gene036759:intron | 30.0% |
| !!! | TCTTTTTTTCTAAAGGATGG+GGG | + | chr8.1:11795424-11795443 | MS.gene036759:intron | 30.0% |
| AAACTTTGTCCCTGAACATA+AGG | - | chr8.1:11796385-11796404 | None:intergenic | 35.0% | |
| AACTTTGTCCCTGAACATAA+GGG | - | chr8.1:11796384-11796403 | None:intergenic | 35.0% | |
| ACCTTGGAATGCATTTATCA+CGG | + | chr8.1:11794585-11794604 | MS.gene036759:CDS | 35.0% | |
| AGATCTTCAGCAATAAATCC+TGG | - | chr8.1:11796483-11796502 | None:intergenic | 35.0% | |
| ATTGACAACACTGATACAAG+AGG | + | chr8.1:11795189-11795208 | MS.gene036759:intron | 35.0% | |
| CTAAAACAATGTCCTTAGGT+AGG | + | chr8.1:11795057-11795076 | MS.gene036759:intron | 35.0% | |
| GATCTGACCAAAATAAGTAG+AGG | - | chr8.1:11795763-11795782 | None:intergenic | 35.0% | |
| GATCTTCAGCAATAAATCCT+GGG | - | chr8.1:11796482-11796501 | None:intergenic | 35.0% | |
| GGAAAGTAGATTCTAGATCA+TGG | + | chr8.1:11795368-11795387 | MS.gene036759:intron | 35.0% | |
| GTAATATGTGGTTTAGCAGA+TGG | + | chr8.1:11794874-11794893 | MS.gene036759:CDS | 35.0% | |
| TAAAGACAATGCAACATAGG+AGG | - | chr8.1:11796299-11796318 | None:intergenic | 35.0% | |
| TAATACCTGTCAACCACAAA+AGG | - | chr8.1:11796176-11796195 | None:intergenic | 35.0% | |
| TAGGAGGGACTAAAATTTGA+TGG | + | chr8.1:11795737-11795756 | MS.gene036759:intron | 35.0% | |
| TATCTATCCGAACATACTAG+CGG | - | chr8.1:11796094-11796113 | None:intergenic | 35.0% | |
| TGCTAAAGACAATGCAACAT+AGG | - | chr8.1:11796302-11796321 | None:intergenic | 35.0% | |
| TTGAAGGTTAAGGGAGAAAA+AGG | + | chr8.1:11795347-11795366 | MS.gene036759:intron | 35.0% | |
| TTTCTGCTTGGATTTACCAA+TGG | + | chr8.1:11796723-11796742 | MS.gene036759:CDS | 35.0% | |
| TTTGTCTTCATGGACCAAAT+TGG | + | chr8.1:11796667-11796686 | MS.gene036759:CDS | 35.0% | |
| ! | AAAATTAAGGGACCAGCTTT+TGG | + | chr8.1:11796420-11796439 | MS.gene036759:CDS | 35.0% |
| ! | ACAGCTTGCATATACTGTTT+TGG | - | chr8.1:11794940-11794959 | None:intergenic | 35.0% |
| ! | ATCACTTGATGCTAGCTTAA+CGG | - | chr8.1:11794494-11794513 | None:intergenic | 35.0% |
| ! | CTAGGTTATAGTTTGTAGGA+GGG | + | chr8.1:11795722-11795741 | MS.gene036759:intron | 35.0% |
| ! | TAATACCTTTTGTGGTTGAC+AGG | + | chr8.1:11796168-11796187 | MS.gene036759:intron | 35.0% |
| !! | TTGATGGCCTCTACTTATTT+TGG | + | chr8.1:11795753-11795772 | MS.gene036759:intron | 35.0% |
| !!! | ACTTATTTTGAGACCCTTTG+GGG | - | chr8.1:11796244-11796263 | None:intergenic | 35.0% |
| !!! | CACTTATTTTGAGACCCTTT+GGG | - | chr8.1:11796245-11796264 | None:intergenic | 35.0% |
| !!! | TATATGCAAGCTGTTTTTGC+TGG | + | chr8.1:11794946-11794965 | MS.gene036759:CDS | 35.0% |
| AAAGACAAATGCCCCCATAA+TGG | - | chr8.1:11795409-11795428 | None:intergenic | 40.0% | |
| AAGTGCTCACTTGTACTTCA+TGG | + | chr8.1:11796260-11796279 | MS.gene036759:CDS | 40.0% | |
| AATCCAAGGCTCTTAAGGAT+TGG | + | chr8.1:11796505-11796524 | MS.gene036759:CDS | 40.0% | |
| ACCTTCTCAATGTGGTTAGT+TGG | - | chr8.1:11794637-11794656 | None:intergenic | 40.0% | |
| ACTTCTTGCGATGATGAGTT+GGG | + | chr8.1:11794693-11794712 | MS.gene036759:CDS | 40.0% | |
| AGATCCACAGCTACCATTAT+GGG | + | chr8.1:11795393-11795412 | MS.gene036759:intron | 40.0% | |
| ATACCAATCCTTAAGAGCCT+TGG | - | chr8.1:11796511-11796530 | None:intergenic | 40.0% | |
| CAATGTATCAAAAGGGCCAT+AGG | + | chr8.1:11796603-11796622 | MS.gene036759:CDS | 40.0% | |
| CATCTTTCCGCTAGTATGTT+CGG | + | chr8.1:11796084-11796103 | MS.gene036759:intron | 40.0% | |
| GCAACATAGGAGGAAAACTA+TGG | - | chr8.1:11796289-11796308 | None:intergenic | 40.0% | |
| GTAACTCTATCTATCTTCCC+AGG | + | chr8.1:11796462-11796481 | MS.gene036759:CDS | 40.0% | |
| GTATCATCAGAGTGTACTTC+AGG | + | chr8.1:11796353-11796372 | MS.gene036759:CDS | 40.0% | |
| GTTGCAGCTGTTGTAATATG+TGG | + | chr8.1:11794862-11794881 | MS.gene036759:CDS | 40.0% | |
| GTTGGAGTAAAACAACACTG+AGG | + | chr8.1:11794719-11794738 | MS.gene036759:CDS | 40.0% | |
| TACTTCTTGCGATGATGAGT+TGG | + | chr8.1:11794692-11794711 | MS.gene036759:CDS | 40.0% | |
| TCCAACTAACCACATTGAGA+AGG | + | chr8.1:11794633-11794652 | MS.gene036759:CDS | 40.0% | |
| TCTTGAATCCAAGGCTCTTA+AGG | + | chr8.1:11796500-11796519 | MS.gene036759:CDS | 40.0% | |
| TGATGATACTGCTGCATGAT+AGG | - | chr8.1:11796342-11796361 | None:intergenic | 40.0% | |
| TGCTGAAGATCTTGAATCCA+AGG | + | chr8.1:11796491-11796510 | MS.gene036759:CDS | 40.0% | |
| ! | ATGGCCCTTTTGATACATTG+TGG | - | chr8.1:11796603-11796622 | None:intergenic | 40.0% |
| ! | GCTAGGTTATAGTTTGTAGG+AGG | + | chr8.1:11795721-11795740 | MS.gene036759:intron | 40.0% |
| !! | ACTGCTTTTCTTGCTTTGCT+AGG | + | chr8.1:11795704-11795723 | MS.gene036759:intron | 40.0% |
| !! | TCTGAGAAATGCACTGACTT+AGG | - | chr8.1:11796780-11796799 | None:intergenic | 40.0% |
| !! | TTGGTTGGTGGAAGTTTGAT+AGG | + | chr8.1:11794898-11794917 | MS.gene036759:CDS | 40.0% |
| !!! | GCACTTATTTTGAGACCCTT+TGG | - | chr8.1:11796246-11796265 | None:intergenic | 40.0% |
| ACAGTATCCAGAACCAACCT+AGG | - | chr8.1:11796866-11796885 | None:intergenic | 45.0% | |
| AGGAGAGTCCCTTATGTTCA+GGG | + | chr8.1:11796373-11796392 | MS.gene036759:CDS | 45.0% | |
| ATCACTACCTCAAACCCCAA+AGG | + | chr8.1:11796227-11796246 | MS.gene036759:CDS | 45.0% | |
| ATCCACAGCTACCATTATGG+GGG | + | chr8.1:11795395-11795414 | MS.gene036759:intron | 45.0% | |
| ATCCATTTCTTGCTTGGAGC+AGG | + | chr8.1:11794553-11794572 | MS.gene036759:CDS | 45.0% | |
| ATGTGGTTTAGCAGATGGCT+TGG | + | chr8.1:11794879-11794898 | MS.gene036759:CDS | 45.0% | |
| CAGATCCACAGCTACCATTA+TGG | + | chr8.1:11795392-11795411 | MS.gene036759:intron | 45.0% | |
| CAGCGAAAACCTTCTCAATG+TGG | - | chr8.1:11794645-11794664 | None:intergenic | 45.0% | |
| CTGAGGTTGCGAATGAACTT+AGG | + | chr8.1:11794736-11794755 | MS.gene036759:CDS | 45.0% | |
| CTTCTTGCGATGATGAGTTG+GGG | + | chr8.1:11794694-11794713 | MS.gene036759:CDS | 45.0% | |
| GATCCACAGCTACCATTATG+GGG | + | chr8.1:11795394-11795413 | MS.gene036759:intron | 45.0% | |
| GCAGTGGCAGGGAAAATTAA+GGG | + | chr8.1:11796408-11796427 | MS.gene036759:CDS | 45.0% | |
| GCCGTGATAAATGCATTCCA+AGG | - | chr8.1:11794589-11794608 | None:intergenic | 45.0% | |
| GGAAGTTTGATAGGATCAGC+AGG | + | chr8.1:11794907-11794926 | MS.gene036759:CDS | 45.0% | |
| GTTTGATAGGATCAGCAGGA+AGG | + | chr8.1:11794911-11794930 | MS.gene036759:CDS | 45.0% | |
| TCACTACCTCAAACCCCAAA+GGG | + | chr8.1:11796228-11796247 | MS.gene036759:CDS | 45.0% | |
| TGCAGTGGCAGGGAAAATTA+AGG | + | chr8.1:11796407-11796426 | MS.gene036759:CDS | 45.0% | |
| TGCTCACTTGTACTTCATGG+TGG | + | chr8.1:11796263-11796282 | MS.gene036759:CDS | 45.0% | |
| TGGTAGCTCCTGTCATTGAT+TGG | + | chr8.1:11794785-11794804 | MS.gene036759:CDS | 45.0% | |
| TTCCTGCTCCAAGCAAGAAA+TGG | - | chr8.1:11794558-11794577 | None:intergenic | 45.0% | |
| ! | CATTGAGAAGGTTTTCGCTG+TGG | + | chr8.1:11794645-11794664 | MS.gene036759:CDS | 45.0% |
| ! | GGTAGCTCCTGTCATTGATT+GGG | + | chr8.1:11794786-11794805 | MS.gene036759:CDS | 45.0% |
| ! | GGTTTGAGGTAGTGATGCTT+TGG | - | chr8.1:11796223-11796242 | None:intergenic | 45.0% |
| ! | GGTTTTCGCTGTGGCTTATA+TGG | + | chr8.1:11794654-11794673 | MS.gene036759:CDS | 45.0% |
| ! | TAAGCGTCTCTTGTTTCGCT+CGG | - | chr8.1:11794517-11794536 | None:intergenic | 45.0% |
| !! | ACAAAGTTTTGTGCAGTGGC+AGG | + | chr8.1:11796396-11796415 | MS.gene036759:CDS | 45.0% |
| !! | AGGGACAAAGTTTTGTGCAG+TGG | + | chr8.1:11796392-11796411 | MS.gene036759:CDS | 45.0% |
| !! | CAAAGTTTTGTGCAGTGGCA+GGG | + | chr8.1:11796397-11796416 | MS.gene036759:CDS | 45.0% |
| ATTGTGATGACCGCGTTCCT+CGG | + | chr8.1:11796816-11796835 | MS.gene036759:CDS | 50.0% | |
| CAGGAGAGTCCCTTATGTTC+AGG | + | chr8.1:11796372-11796391 | MS.gene036759:CDS | 50.0% | |
| GAGATGAAAGAGAGGCCAAG+TGG | + | chr8.1:11794823-11794842 | MS.gene036759:CDS | 50.0% | |
| GTAGGGACGAGATGAAAGAG+AGG | + | chr8.1:11794815-11794834 | MS.gene036759:CDS | 50.0% | |
| GTCATGCCATAAGCACCACT+TGG | - | chr8.1:11794841-11794860 | None:intergenic | 50.0% | |
| TTTCATCTCGTCCCTACTCG+AGG | - | chr8.1:11794812-11794831 | None:intergenic | 50.0% | |
| TTTGCTGGAACTGCTTCCTC+AGG | + | chr8.1:11794961-11794980 | MS.gene036759:CDS | 50.0% | |
| ! | CATTGATTGGGCCTCGAGTA+GGG | + | chr8.1:11794798-11794817 | MS.gene036759:CDS | 50.0% |
| ! | TCATTGATTGGGCCTCGAGT+AGG | + | chr8.1:11794797-11794816 | MS.gene036759:CDS | 50.0% |
| ! | TTGGTGGTTCTGTCCTAGGT+TGG | + | chr8.1:11796850-11796869 | MS.gene036759:CDS | 50.0% |
| !! | GAGCAGGAAACTTGCTACCT+TGG | + | chr8.1:11794569-11794588 | MS.gene036759:CDS | 50.0% |
| !! | GGTTTAGCAGATGGCTTGGT+TGG | + | chr8.1:11794883-11794902 | MS.gene036759:CDS | 50.0% |
| !! | GTTCTGTCCTAGGTTGGTTC+TGG | + | chr8.1:11796856-11796875 | MS.gene036759:CDS | 50.0% |
| !! | TTAGCAGATGGCTTGGTTGG+TGG | + | chr8.1:11794886-11794905 | MS.gene036759:CDS | 50.0% |
| !! | TTGAGACCCTTTGGGGTTTG+AGG | - | chr8.1:11796237-11796256 | None:intergenic | 50.0% |
| !! | TTGGTTGGTGGTTCTGTCCT+AGG | + | chr8.1:11796846-11796865 | MS.gene036759:CDS | 50.0% |
| ATGACCGCGTTCCTCGGATT+CGG | + | chr8.1:11796822-11796841 | MS.gene036759:CDS | 55.0% | |
| CGCGCTATAGCTCCTACCTA+AGG | - | chr8.1:11795072-11795091 | None:intergenic | 55.0% | |
| CTCGAGGCCCAATCAATGAC+AGG | - | chr8.1:11794796-11794815 | None:intergenic | 55.0% | |
| GAGAGGCCAAGTGGTGCTTA+TGG | + | chr8.1:11794832-11794851 | MS.gene036759:CDS | 55.0% | |
| TGCCCCCATAATGGTAGCTG+TGG | - | chr8.1:11795400-11795419 | None:intergenic | 55.0% | |
| ! | CGATGATGAGTTGGGGAGGT+TGG | + | chr8.1:11794701-11794720 | MS.gene036759:CDS | 55.0% |
| ! | CTTGCGATGATGAGTTGGGG+AGG | + | chr8.1:11794697-11794716 | MS.gene036759:CDS | 55.0% |
| ! | TCTTGCTGTGGCAGCACCTA+TGG | - | chr8.1:11796622-11796641 | None:intergenic | 55.0% |
| !! | TTCCTCGGATTCGGCTTGGT+TGG | + | chr8.1:11796831-11796850 | MS.gene036759:CDS | 55.0% |
| CAAGCCGAATCCGAGGAACG+CGG | - | chr8.1:11796829-11796848 | None:intergenic | 60.0% | |
| CACCAACCAAGCCGAATCCG+AGG | - | chr8.1:11796836-11796855 | None:intergenic | 60.0% | |
| !! | CTCGGATTCGGCTTGGTTGG+TGG | + | chr8.1:11796834-11796853 | MS.gene036759:CDS | 60.0% |
| CGCGTTCCTCGGATTCGGCT+TGG | + | chr8.1:11796827-11796846 | MS.gene036759:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 11794484 | 11796887 | 11794484 | ID=MS.gene036759 |
| chr8.1 | mRNA | 11794484 | 11796887 | 11794484 | ID=MS.gene036759.t1;Parent=MS.gene036759 |
| chr8.1 | exon | 11794484 | 11794982 | 11794484 | ID=MS.gene036759.t1.exon1;Parent=MS.gene036759.t1 |
| chr8.1 | CDS | 11794484 | 11794982 | 11794484 | ID=cds.MS.gene036759.t1;Parent=MS.gene036759.t1 |
| chr8.1 | exon | 11796190 | 11796887 | 11796190 | ID=MS.gene036759.t1.exon2;Parent=MS.gene036759.t1 |
| chr8.1 | CDS | 11796190 | 11796887 | 11796190 | ID=cds.MS.gene036759.t1;Parent=MS.gene036759.t1 |
| Gene Sequence |
| Protein sequence |
