Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59641.t1 | XP_003609351.1 | 99 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59641.t1 | Q84XI3 | 63.5 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 2.4e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59641.t1 | G7JE40 | 99.0 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59641 | MS.gene22871 | PPI |
| MS.gene08114 | MS.gene59641 | PPI |
| MS.gene59641 | MS.gene025979 | PPI |
| MS.gene59641 | MS.gene025499 | PPI |
| MS.gene59641 | MS.gene35851 | PPI |
| MS.gene050575 | MS.gene59641 | PPI |
| MS.gene59641 | MS.gene024513 | PPI |
| MS.gene59641 | MS.gene05630 | PPI |
| MS.gene59641 | MS.gene34608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59641.t1 | MTR_4g114710 | 98.995 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 0.0 | 803 |
| MS.gene59641.t1 | MTR_0003s0470 | 49.239 | 394 | 186 | 4 | 15 | 398 | 26 | 415 | 3.02e-127 | 373 |
| MS.gene59641.t1 | MTR_3g462280 | 45.700 | 407 | 202 | 7 | 7 | 398 | 21 | 423 | 6.63e-114 | 339 |
| MS.gene59641.t1 | MTR_0008s0170 | 27.660 | 423 | 263 | 7 | 6 | 398 | 1 | 410 | 7.95e-49 | 171 |
| MS.gene59641.t1 | MTR_0008s0130 | 28.372 | 430 | 251 | 10 | 6 | 398 | 1 | 410 | 4.86e-47 | 166 |
| MS.gene59641.t1 | MTR_4g050990 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene59641.t1 | MTR_2g089520 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene59641.t1 | MTR_2g011600 | 28.671 | 429 | 250 | 12 | 7 | 398 | 10 | 419 | 1.58e-45 | 162 |
| MS.gene59641.t1 | MTR_2g047968 | 29.604 | 429 | 242 | 13 | 8 | 398 | 4 | 410 | 1.96e-41 | 152 |
| MS.gene59641.t1 | MTR_2g011580 | 27.763 | 389 | 239 | 9 | 40 | 398 | 2 | 378 | 8.40e-40 | 146 |
| MS.gene59641.t1 | MTR_2g011600 | 29.132 | 357 | 196 | 10 | 81 | 398 | 30 | 368 | 2.08e-35 | 134 |
| MS.gene59641.t1 | MTR_1g071120 | 27.616 | 344 | 199 | 9 | 13 | 324 | 50 | 375 | 1.09e-32 | 127 |
| MS.gene59641.t1 | MTR_8g007285 | 26.075 | 372 | 230 | 10 | 57 | 396 | 2 | 360 | 3.05e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59641.t1 | AT1G02630 | 63.520 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 1.52e-178 | 502 |
| MS.gene59641.t1 | AT1G02630 | 55.867 | 392 | 115 | 6 | 10 | 398 | 9 | 345 | 9.44e-146 | 417 |
| MS.gene59641.t1 | AT1G70330 | 49.114 | 395 | 186 | 4 | 16 | 398 | 59 | 450 | 3.93e-123 | 364 |
| MS.gene59641.t1 | AT3G09990 | 28.193 | 415 | 242 | 12 | 21 | 398 | 18 | 413 | 7.89e-44 | 157 |
| MS.gene59641.t1 | AT1G61630 | 27.378 | 431 | 249 | 9 | 9 | 398 | 5 | 412 | 5.81e-43 | 155 |
| MS.gene59641.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene59641.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene59641.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene59641.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene59641.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 2.72e-41 | 151 |
| MS.gene59641.t1 | AT4G05130 | 27.791 | 421 | 253 | 12 | 11 | 398 | 10 | 412 | 1.72e-40 | 149 |
| MS.gene59641.t1 | AT4G05140 | 26.744 | 430 | 259 | 12 | 5 | 398 | 4 | 413 | 5.83e-38 | 142 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGGGACCAGCTTT+TGG | 0.257914 | 8.1:+11695820 | MS.gene59641:CDS |
| TTATAATTTAGCTGATCTTA+TGG | 0.261483 | 8.1:+11695951 | MS.gene59641:CDS |
| TGCAGTGGCAGGGAAAATTA+AGG | 0.277433 | 8.1:+11695807 | MS.gene59641:CDS |
| GTTCTGTCCTAGGTTGGTTC+TGG | 0.300139 | 8.1:+11696256 | MS.gene59641:CDS |
| TCTTGAATCCAAGGCTCTTA+AGG | 0.316097 | 8.1:+11695900 | MS.gene59641:CDS |
| TAAACTGTAATCAATATAAT+AGG | 0.319839 | 8.1:-11695931 | None:intergenic |
| ACAGCTTGCATATACTGTTT+TGG | 0.330078 | 8.1:-11694337 | None:intergenic |
| TATAATTTAGCTGATCTTAT+GGG | 0.341304 | 8.1:+11695952 | MS.gene59641:CDS |
| TACATAATCCATTTCTTGCT+TGG | 0.351729 | 8.1:+11693947 | MS.gene59641:CDS |
| CAGGAGAGTCCCTTATGTTC+AGG | 0.355351 | 8.1:+11695772 | MS.gene59641:CDS |
| GTATCATCAGAGTGTACTTC+AGG | 0.361010 | 8.1:+11695753 | MS.gene59641:CDS |
| TGGTAGCTCCTGTCATTGAT+TGG | 0.376095 | 8.1:+11694185 | MS.gene59641:CDS |
| GAGAGGCCAAGTGGTGCTTA+TGG | 0.382783 | 8.1:+11694232 | MS.gene59641:CDS |
| TTGGTTGGTGGTTCTGTCCT+AGG | 0.383076 | 8.1:+11696246 | MS.gene59641:CDS |
| AAACTTTGTCCCTGAACATA+AGG | 0.390189 | 8.1:-11695782 | None:intergenic |
| TGATGATACTGCTGCATGAT+AGG | 0.394711 | 8.1:-11695739 | None:intergenic |
| CGCGTTCCTCGGATTCGGCT+TGG | 0.397450 | 8.1:+11696227 | MS.gene59641:CDS |
| TTTGTCTTCATGGACCAAAT+TGG | 0.398789 | 8.1:+11696067 | MS.gene59641:CDS |
| ACCTTCTCAATGTGGTTAGT+TGG | 0.405196 | 8.1:-11694034 | None:intergenic |
| TTCCTGCTCCAAGCAAGAAA+TGG | 0.405518 | 8.1:-11693955 | None:intergenic |
| CTCGGATTCGGCTTGGTTGG+TGG | 0.408001 | 8.1:+11696234 | MS.gene59641:CDS |
| TTGAGACCCTTTGGGGTTTG+AGG | 0.410939 | 8.1:-11695634 | None:intergenic |
| TCTTGCTGTGGCAGCACCTA+TGG | 0.413596 | 8.1:-11696019 | None:intergenic |
| AAGTGCTCACTTGTACTTCA+TGG | 0.413740 | 8.1:+11695660 | MS.gene59641:CDS |
| ATCCATTTCTTGCTTGGAGC+AGG | 0.419667 | 8.1:+11693953 | MS.gene59641:CDS |
| ATGACCGCGTTCCTCGGATT+CGG | 0.421562 | 8.1:+11696222 | MS.gene59641:CDS |
| ATGTTCCACAATGTATCAAA+AGG | 0.427242 | 8.1:+11695995 | MS.gene59641:CDS |
| TTGGTTGGTGGAAGTTTGAT+AGG | 0.433123 | 8.1:+11694298 | MS.gene59641:CDS |
| ACTTCTTGCGATGATGAGTT+GGG | 0.436575 | 8.1:+11694093 | MS.gene59641:CDS |
| TTTGCTGGAACTGCTTCCTC+AGG | 0.440158 | 8.1:+11694361 | MS.gene59641:CDS |
| ATACCAATCCTTAAGAGCCT+TGG | 0.444568 | 8.1:-11695908 | None:intergenic |
| GAGCAGGAAACTTGCTACCT+TGG | 0.445287 | 8.1:+11693969 | MS.gene59641:CDS |
| TACTTCTTGCGATGATGAGT+TGG | 0.445586 | 8.1:+11694092 | MS.gene59641:CDS |
| AGATCTTCAGCAATAAATCC+TGG | 0.450755 | 8.1:-11695880 | None:intergenic |
| GGTAGCTCCTGTCATTGATT+GGG | 0.452656 | 8.1:+11694186 | MS.gene59641:CDS |
| GCAACATAGGAGGAAAACTA+TGG | 0.455079 | 8.1:-11695686 | None:intergenic |
| ATTGTTCTTACATTTCTGCT+TGG | 0.455315 | 8.1:+11696111 | MS.gene59641:CDS |
| ATTGTGATGACCGCGTTCCT+CGG | 0.461564 | 8.1:+11696216 | MS.gene59641:CDS |
| AATGTTTGTTATGTCTCTCA+TGG | 0.465994 | 8.1:+11694165 | MS.gene59641:CDS |
| CTGAGGTTGCGAATGAACTT+AGG | 0.472940 | 8.1:+11694136 | MS.gene59641:CDS |
| GGTTTGAGGTAGTGATGCTT+TGG | 0.473253 | 8.1:-11695620 | None:intergenic |
| AGGAGAGTCCCTTATGTTCA+GGG | 0.476690 | 8.1:+11695773 | MS.gene59641:CDS |
| CGATGATGAGTTGGGGAGGT+TGG | 0.479957 | 8.1:+11694101 | MS.gene59641:CDS |
| CATTGATTGGGCCTCGAGTA+GGG | 0.484656 | 8.1:+11694198 | MS.gene59641:CDS |
| TCTGAGAAATGCACTGACTT+AGG | 0.485958 | 8.1:-11696177 | None:intergenic |
| AGAAATGTAAGAACAATCAT+TGG | 0.487588 | 8.1:-11696105 | None:intergenic |
| TCATTGATTGGGCCTCGAGT+AGG | 0.493347 | 8.1:+11694197 | MS.gene59641:CDS |
| TAAGCGTCTCTTGTTTCGCT+CGG | 0.504224 | 8.1:-11693914 | None:intergenic |
| TTCCTCGGATTCGGCTTGGT+TGG | 0.504238 | 8.1:+11696231 | MS.gene59641:CDS |
| TGCTGAAGATCTTGAATCCA+AGG | 0.504556 | 8.1:+11695891 | MS.gene59641:CDS |
| AATCCAAGGCTCTTAAGGAT+TGG | 0.505326 | 8.1:+11695905 | MS.gene59641:CDS |
| ATTATGAATATTCCAAAAGC+TGG | 0.509136 | 8.1:-11695832 | None:intergenic |
| GTTGCAGCTGTTGTAATATG+TGG | 0.509743 | 8.1:+11694262 | MS.gene59641:CDS |
| GGTTTAGCAGATGGCTTGGT+TGG | 0.510374 | 8.1:+11694283 | MS.gene59641:CDS |
| GCAGTGGCAGGGAAAATTAA+GGG | 0.512760 | 8.1:+11695808 | MS.gene59641:CDS |
| AACTTTGTCCCTGAACATAA+GGG | 0.516896 | 8.1:-11695781 | None:intergenic |
| GTATTATAATTTCAATCTTG+AGG | 0.517953 | 8.1:+11695590 | MS.gene59641:CDS |
| GTTGGTTCTGGATACTGTGA+AGG | 0.522252 | 8.1:+11696268 | MS.gene59641:CDS |
| TTGGTGGTTCTGTCCTAGGT+TGG | 0.528954 | 8.1:+11696250 | MS.gene59641:CDS |
| TTAGCAGATGGCTTGGTTGG+TGG | 0.535563 | 8.1:+11694286 | MS.gene59641:CDS |
| AACACTAGTAAGATATCCAT+TGG | 0.535884 | 8.1:-11696139 | None:intergenic |
| TCACTACCTCAAACCCCAAA+GGG | 0.535947 | 8.1:+11695628 | MS.gene59641:CDS |
| TTTCTGCTTGGATTTACCAA+TGG | 0.538009 | 8.1:+11696123 | MS.gene59641:CDS |
| GGAAGTTTGATAGGATCAGC+AGG | 0.544382 | 8.1:+11694307 | MS.gene59641:CDS |
| CAATGTATCAAAAGGGCCAT+AGG | 0.548021 | 8.1:+11696003 | MS.gene59641:CDS |
| CTCGAGGCCCAATCAATGAC+AGG | 0.549987 | 8.1:-11694193 | None:intergenic |
| ATAATTTAGCTGATCTTATG+GGG | 0.556528 | 8.1:+11695953 | MS.gene59641:CDS |
| TGTTCCACAATGTATCAAAA+GGG | 0.559037 | 8.1:+11695996 | MS.gene59641:CDS |
| GTAATATGTGGTTTAGCAGA+TGG | 0.566070 | 8.1:+11694274 | MS.gene59641:CDS |
| TGCTAAAGACAATGCAACAT+AGG | 0.569551 | 8.1:-11695699 | None:intergenic |
| GATCTTCAGCAATAAATCCT+GGG | 0.574505 | 8.1:-11695879 | None:intergenic |
| ATGTGGTTTAGCAGATGGCT+TGG | 0.575031 | 8.1:+11694279 | MS.gene59641:CDS |
| GTAACTCTATCTATCTTCCC+AGG | 0.575256 | 8.1:+11695862 | MS.gene59641:CDS |
| ACCTTGGAATGCATTTATCA+CGG | 0.589722 | 8.1:+11693985 | MS.gene59641:CDS |
| TAAAGACAATGCAACATAGG+AGG | 0.600160 | 8.1:-11695696 | None:intergenic |
| CACCAACCAAGCCGAATCCG+AGG | 0.600577 | 8.1:-11696233 | None:intergenic |
| TCCAACTAACCACATTGAGA+AGG | 0.605730 | 8.1:+11694033 | MS.gene59641:CDS |
| ATCACTACCTCAAACCCCAA+AGG | 0.611165 | 8.1:+11695627 | MS.gene59641:CDS |
| GTCATGCCATAAGCACCACT+TGG | 0.614144 | 8.1:-11694238 | None:intergenic |
| ACAGTATCCAGAACCAACCT+AGG | 0.614984 | 8.1:-11696263 | None:intergenic |
| CTTGCGATGATGAGTTGGGG+AGG | 0.619198 | 8.1:+11694097 | MS.gene59641:CDS |
| TTTCATCTCGTCCCTACTCG+AGG | 0.623295 | 8.1:-11694209 | None:intergenic |
| GTTTGATAGGATCAGCAGGA+AGG | 0.624638 | 8.1:+11694311 | MS.gene59641:CDS |
| GCCGTGATAAATGCATTCCA+AGG | 0.626474 | 8.1:-11693986 | None:intergenic |
| GTAGGGACGAGATGAAAGAG+AGG | 0.629913 | 8.1:+11694215 | MS.gene59641:CDS |
| ATAGAATAATAGTCTTGCTG+TGG | 0.649512 | 8.1:-11696031 | None:intergenic |
| CTTCTTGCGATGATGAGTTG+GGG | 0.656503 | 8.1:+11694094 | MS.gene59641:CDS |
| CAGCGAAAACCTTCTCAATG+TGG | 0.674870 | 8.1:-11694042 | None:intergenic |
| TGCTCACTTGTACTTCATGG+TGG | 0.701698 | 8.1:+11695663 | MS.gene59641:CDS |
| CAAGCCGAATCCGAGGAACG+CGG | 0.703497 | 8.1:-11696226 | None:intergenic |
| GAGATGAAAGAGAGGCCAAG+TGG | 0.710667 | 8.1:+11694223 | MS.gene59641:CDS |
| GTTGGAGTAAAACAACACTG+AGG | 0.825176 | 8.1:+11694119 | MS.gene59641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACATATATATTAAAATT+GGG | + | chr8.1:11695315-11695334 | MS.gene59641:intron | 10.0% |
| !! | TACAACATATATATTAAAAT+TGG | + | chr8.1:11695314-11695333 | MS.gene59641:intron | 10.0% |
| !! | ATCAAGACAATTAAATTAAA+AGG | + | chr8.1:11695378-11695397 | MS.gene59641:intron | 15.0% |
| !! | TAAACTGTAATCAATATAAT+AGG | - | chr8.1:11695934-11695953 | None:intergenic | 15.0% |
| !! | TAAATCTATACCATAATTTA+TGG | + | chr8.1:11695226-11695245 | MS.gene59641:intron | 15.0% |
| !!! | TAAATTTTTTGTTACAATGA+CGG | - | chr8.1:11694957-11694976 | None:intergenic | 15.0% |
| !!! | TTTTAGATAGTAATGTAAAA+AGG | - | chr8.1:11694443-11694462 | None:intergenic | 15.0% |
| !!! | TTTTCCAAATTTCATTTTAA+AGG | + | chr8.1:11695289-11695308 | MS.gene59641:intron | 15.0% |
| !! | AAATTAGTTGCCATAAATTA+TGG | - | chr8.1:11695239-11695258 | None:intergenic | 20.0% |
| !! | ATTCATGTATAAATTCAAGT+GGG | - | chr8.1:11694905-11694924 | None:intergenic | 20.0% |
| !! | ATTTAACAACATTTCTAACT+AGG | - | chr8.1:11694503-11694522 | None:intergenic | 20.0% |
| !! | GTATTATAATTTCAATCTTG+AGG | + | chr8.1:11695590-11695609 | MS.gene59641:CDS | 20.0% |
| !! | TATAATTTAGCTGATCTTAT+GGG | + | chr8.1:11695952-11695971 | MS.gene59641:CDS | 20.0% |
| !! | TATTCATGTATAAATTCAAG+TGG | - | chr8.1:11694906-11694925 | None:intergenic | 20.0% |
| !! | TTATAATTTAGCTGATCTTA+TGG | + | chr8.1:11695951-11695970 | MS.gene59641:CDS | 20.0% |
| !!! | TATGCCTTTAAAATGAAATT+TGG | - | chr8.1:11695296-11695315 | None:intergenic | 20.0% |
| !!! | TCATATTATAATACCTTTTG+TGG | + | chr8.1:11695560-11695579 | MS.gene59641:intron | 20.0% |
| ! | AAGTATATACAAGCATTTGA+AGG | + | chr8.1:11694731-11694750 | MS.gene59641:intron | 25.0% |
| ! | AGAAATGTAAGAACAATCAT+TGG | - | chr8.1:11696108-11696127 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATCAACTATG+AGG | - | chr8.1:11694418-11694437 | None:intergenic | 25.0% |
| ! | ATAAAATACTCATTGTCGTA+TGG | - | chr8.1:11694705-11694724 | None:intergenic | 25.0% |
| ! | ATAATTTAGCTGATCTTATG+GGG | + | chr8.1:11695953-11695972 | MS.gene59641:CDS | 25.0% |
| ! | ATTATGAATATTCCAAAAGC+TGG | - | chr8.1:11695835-11695854 | None:intergenic | 25.0% |
| ! | GTAAAATTGATCAACTATGA+GGG | - | chr8.1:11694417-11694436 | None:intergenic | 25.0% |
| ! | TGAAGACAAACTATAAAAAG+TGG | - | chr8.1:11696057-11696076 | None:intergenic | 25.0% |
| !!! | CTTTTTATAGTTTGTCTTCA+TGG | + | chr8.1:11696057-11696076 | MS.gene59641:CDS | 25.0% |
| !!! | GCATTTGTCTTTTTTTCTAA+AGG | + | chr8.1:11694817-11694836 | MS.gene59641:intron | 25.0% |
| !!! | TGTCTTTTTTTCTAAAGGAT+GGG | + | chr8.1:11694822-11694841 | MS.gene59641:intron | 25.0% |
| !!! | TTGTCTTTTTTTCTAAAGGA+TGG | + | chr8.1:11694821-11694840 | MS.gene59641:intron | 25.0% |
| AAAAACTTTGCCTTAGATGA+AGG | + | chr8.1:11694654-11694673 | MS.gene59641:intron | 30.0% | |
| AACACTAGTAAGATATCCAT+TGG | - | chr8.1:11696142-11696161 | None:intergenic | 30.0% | |
| ATACAAGCATTTGAAGGTTA+AGG | + | chr8.1:11694737-11694756 | MS.gene59641:intron | 30.0% | |
| ATGTTCCACAATGTATCAAA+AGG | + | chr8.1:11695995-11696014 | MS.gene59641:CDS | 30.0% | |
| ATTGTTCTTACATTTCTGCT+TGG | + | chr8.1:11696111-11696130 | MS.gene59641:CDS | 30.0% | |
| CCTTATTCGAACAAATTCTA+AGG | + | chr8.1:11694625-11694644 | MS.gene59641:intron | 30.0% | |
| TACAAGCATTTGAAGGTTAA+GGG | + | chr8.1:11694738-11694757 | MS.gene59641:intron | 30.0% | |
| TACATAATCCATTTCTTGCT+TGG | + | chr8.1:11693947-11693966 | MS.gene59641:CDS | 30.0% | |
| TGTTCCACAATGTATCAAAA+GGG | + | chr8.1:11695996-11696015 | MS.gene59641:CDS | 30.0% | |
| TTTCATGTATCCTTCATCTA+AGG | - | chr8.1:11694667-11694686 | None:intergenic | 30.0% | |
| ! | ACTTCTGTTTTCAACCAATT+TGG | - | chr8.1:11696084-11696103 | None:intergenic | 30.0% |
| ! | ATAGAATAATAGTCTTGCTG+TGG | - | chr8.1:11696034-11696053 | None:intergenic | 30.0% |
| ! | CCTTAGAATTTGTTCGAATA+AGG | - | chr8.1:11694628-11694647 | None:intergenic | 30.0% |
| ! | CTATCTAAAACAATGTCCTT+AGG | + | chr8.1:11694453-11694472 | MS.gene59641:intron | 30.0% |
| ! | TTGTGTTGTAATTTTACCTG+AGG | - | chr8.1:11694380-11694399 | None:intergenic | 30.0% |
| ! | TTTGCTAGGTTATAGTTTGT+AGG | + | chr8.1:11695118-11695137 | MS.gene59641:intron | 30.0% |
| !! | AATGTTTGTTATGTCTCTCA+TGG | + | chr8.1:11694165-11694184 | MS.gene59641:CDS | 30.0% |
| !! | CATAGTTTTGCTAGATGTAT+AGG | - | chr8.1:11695039-11695058 | None:intergenic | 30.0% |
| !!! | CTTAAAGAATTTTGAAGCTG+TGG | + | chr8.1:11695069-11695088 | MS.gene59641:intron | 30.0% |
| !!! | GTCTTTTTTTCTAAAGGATG+GGG | + | chr8.1:11694823-11694842 | MS.gene59641:intron | 30.0% |
| !!! | TCTTTTTTTCTAAAGGATGG+GGG | + | chr8.1:11694824-11694843 | MS.gene59641:intron | 30.0% |
| AAACTTTGTCCCTGAACATA+AGG | - | chr8.1:11695785-11695804 | None:intergenic | 35.0% | |
| AACTTTGTCCCTGAACATAA+GGG | - | chr8.1:11695784-11695803 | None:intergenic | 35.0% | |
| ACCTTGGAATGCATTTATCA+CGG | + | chr8.1:11693985-11694004 | MS.gene59641:CDS | 35.0% | |
| AGATCTTCAGCAATAAATCC+TGG | - | chr8.1:11695883-11695902 | None:intergenic | 35.0% | |
| ATTGACAACACTGATACAAG+AGG | + | chr8.1:11694589-11694608 | MS.gene59641:intron | 35.0% | |
| CTAAAACAATGTCCTTAGGT+AGG | + | chr8.1:11694457-11694476 | MS.gene59641:intron | 35.0% | |
| GATCTGACCAAAATAAGTAG+AGG | - | chr8.1:11695163-11695182 | None:intergenic | 35.0% | |
| GATCTTCAGCAATAAATCCT+GGG | - | chr8.1:11695882-11695901 | None:intergenic | 35.0% | |
| GGAAAGTAGATTCTAGATCA+TGG | + | chr8.1:11694768-11694787 | MS.gene59641:intron | 35.0% | |
| GTAATATGTGGTTTAGCAGA+TGG | + | chr8.1:11694274-11694293 | MS.gene59641:CDS | 35.0% | |
| TAAAGACAATGCAACATAGG+AGG | - | chr8.1:11695699-11695718 | None:intergenic | 35.0% | |
| TAATACCTGTCAACCACAAA+AGG | - | chr8.1:11695576-11695595 | None:intergenic | 35.0% | |
| TAGGAGGGACTAAAATTTGA+TGG | + | chr8.1:11695137-11695156 | MS.gene59641:intron | 35.0% | |
| TATCTATCCGAACATACTAG+CGG | - | chr8.1:11695494-11695513 | None:intergenic | 35.0% | |
| TGCTAAAGACAATGCAACAT+AGG | - | chr8.1:11695702-11695721 | None:intergenic | 35.0% | |
| TTGAAGGTTAAGGGAGAAAA+AGG | + | chr8.1:11694747-11694766 | MS.gene59641:intron | 35.0% | |
| TTTCTGCTTGGATTTACCAA+TGG | + | chr8.1:11696123-11696142 | MS.gene59641:CDS | 35.0% | |
| TTTGTCTTCATGGACCAAAT+TGG | + | chr8.1:11696067-11696086 | MS.gene59641:CDS | 35.0% | |
| ! | AAAATTAAGGGACCAGCTTT+TGG | + | chr8.1:11695820-11695839 | MS.gene59641:CDS | 35.0% |
| ! | ACAGCTTGCATATACTGTTT+TGG | - | chr8.1:11694340-11694359 | None:intergenic | 35.0% |
| ! | CTAGGTTATAGTTTGTAGGA+GGG | + | chr8.1:11695122-11695141 | MS.gene59641:intron | 35.0% |
| ! | TAATACCTTTTGTGGTTGAC+AGG | + | chr8.1:11695568-11695587 | MS.gene59641:intron | 35.0% |
| !! | TTGATGGCCTCTACTTATTT+TGG | + | chr8.1:11695153-11695172 | MS.gene59641:intron | 35.0% |
| !!! | ACTTATTTTGAGACCCTTTG+GGG | - | chr8.1:11695644-11695663 | None:intergenic | 35.0% |
| !!! | CACTTATTTTGAGACCCTTT+GGG | - | chr8.1:11695645-11695664 | None:intergenic | 35.0% |
| !!! | TATATGCAAGCTGTTTTTGC+TGG | + | chr8.1:11694346-11694365 | MS.gene59641:CDS | 35.0% |
| AAAGACAAATGCCCCCATAA+TGG | - | chr8.1:11694809-11694828 | None:intergenic | 40.0% | |
| AAGTGCTCACTTGTACTTCA+TGG | + | chr8.1:11695660-11695679 | MS.gene59641:CDS | 40.0% | |
| AATCCAAGGCTCTTAAGGAT+TGG | + | chr8.1:11695905-11695924 | MS.gene59641:CDS | 40.0% | |
| ACCTTCTCAATGTGGTTAGT+TGG | - | chr8.1:11694037-11694056 | None:intergenic | 40.0% | |
| ACTTCTTGCGATGATGAGTT+GGG | + | chr8.1:11694093-11694112 | MS.gene59641:CDS | 40.0% | |
| AGATCCACAGCTACCATTAT+GGG | + | chr8.1:11694793-11694812 | MS.gene59641:intron | 40.0% | |
| ATACCAATCCTTAAGAGCCT+TGG | - | chr8.1:11695911-11695930 | None:intergenic | 40.0% | |
| CAATGTATCAAAAGGGCCAT+AGG | + | chr8.1:11696003-11696022 | MS.gene59641:CDS | 40.0% | |
| CATCTTTCCGCTAGTATGTT+CGG | + | chr8.1:11695484-11695503 | MS.gene59641:intron | 40.0% | |
| GCAACATAGGAGGAAAACTA+TGG | - | chr8.1:11695689-11695708 | None:intergenic | 40.0% | |
| GTAACTCTATCTATCTTCCC+AGG | + | chr8.1:11695862-11695881 | MS.gene59641:CDS | 40.0% | |
| GTATCATCAGAGTGTACTTC+AGG | + | chr8.1:11695753-11695772 | MS.gene59641:CDS | 40.0% | |
| GTTGCAGCTGTTGTAATATG+TGG | + | chr8.1:11694262-11694281 | MS.gene59641:CDS | 40.0% | |
| GTTGGAGTAAAACAACACTG+AGG | + | chr8.1:11694119-11694138 | MS.gene59641:CDS | 40.0% | |
| TACTTCTTGCGATGATGAGT+TGG | + | chr8.1:11694092-11694111 | MS.gene59641:CDS | 40.0% | |
| TCCAACTAACCACATTGAGA+AGG | + | chr8.1:11694033-11694052 | MS.gene59641:CDS | 40.0% | |
| TCTTGAATCCAAGGCTCTTA+AGG | + | chr8.1:11695900-11695919 | MS.gene59641:CDS | 40.0% | |
| TGATGATACTGCTGCATGAT+AGG | - | chr8.1:11695742-11695761 | None:intergenic | 40.0% | |
| TGCTGAAGATCTTGAATCCA+AGG | + | chr8.1:11695891-11695910 | MS.gene59641:CDS | 40.0% | |
| ! | ATGGCCCTTTTGATACATTG+TGG | - | chr8.1:11696003-11696022 | None:intergenic | 40.0% |
| ! | GCTAGGTTATAGTTTGTAGG+AGG | + | chr8.1:11695121-11695140 | MS.gene59641:intron | 40.0% |
| !! | ACTGCTTTTCTTGCTTTGCT+AGG | + | chr8.1:11695104-11695123 | MS.gene59641:intron | 40.0% |
| !! | TCTGAGAAATGCACTGACTT+AGG | - | chr8.1:11696180-11696199 | None:intergenic | 40.0% |
| !! | TTGGTTGGTGGAAGTTTGAT+AGG | + | chr8.1:11694298-11694317 | MS.gene59641:CDS | 40.0% |
| !!! | GCACTTATTTTGAGACCCTT+TGG | - | chr8.1:11695646-11695665 | None:intergenic | 40.0% |
| ACAGTATCCAGAACCAACCT+AGG | - | chr8.1:11696266-11696285 | None:intergenic | 45.0% | |
| AGGAGAGTCCCTTATGTTCA+GGG | + | chr8.1:11695773-11695792 | MS.gene59641:CDS | 45.0% | |
| ATCACTACCTCAAACCCCAA+AGG | + | chr8.1:11695627-11695646 | MS.gene59641:CDS | 45.0% | |
| ATCCACAGCTACCATTATGG+GGG | + | chr8.1:11694795-11694814 | MS.gene59641:intron | 45.0% | |
| ATCCATTTCTTGCTTGGAGC+AGG | + | chr8.1:11693953-11693972 | MS.gene59641:CDS | 45.0% | |
| ATGTGGTTTAGCAGATGGCT+TGG | + | chr8.1:11694279-11694298 | MS.gene59641:CDS | 45.0% | |
| CAGATCCACAGCTACCATTA+TGG | + | chr8.1:11694792-11694811 | MS.gene59641:intron | 45.0% | |
| CAGCGAAAACCTTCTCAATG+TGG | - | chr8.1:11694045-11694064 | None:intergenic | 45.0% | |
| CTGAGGTTGCGAATGAACTT+AGG | + | chr8.1:11694136-11694155 | MS.gene59641:CDS | 45.0% | |
| CTTCTTGCGATGATGAGTTG+GGG | + | chr8.1:11694094-11694113 | MS.gene59641:CDS | 45.0% | |
| GATCCACAGCTACCATTATG+GGG | + | chr8.1:11694794-11694813 | MS.gene59641:intron | 45.0% | |
| GCAGTGGCAGGGAAAATTAA+GGG | + | chr8.1:11695808-11695827 | MS.gene59641:CDS | 45.0% | |
| GCCGTGATAAATGCATTCCA+AGG | - | chr8.1:11693989-11694008 | None:intergenic | 45.0% | |
| GGAAGTTTGATAGGATCAGC+AGG | + | chr8.1:11694307-11694326 | MS.gene59641:CDS | 45.0% | |
| GTTTGATAGGATCAGCAGGA+AGG | + | chr8.1:11694311-11694330 | MS.gene59641:CDS | 45.0% | |
| TCACTACCTCAAACCCCAAA+GGG | + | chr8.1:11695628-11695647 | MS.gene59641:CDS | 45.0% | |
| TGCAGTGGCAGGGAAAATTA+AGG | + | chr8.1:11695807-11695826 | MS.gene59641:CDS | 45.0% | |
| TGCTCACTTGTACTTCATGG+TGG | + | chr8.1:11695663-11695682 | MS.gene59641:CDS | 45.0% | |
| TGGTAGCTCCTGTCATTGAT+TGG | + | chr8.1:11694185-11694204 | MS.gene59641:CDS | 45.0% | |
| TTCCTGCTCCAAGCAAGAAA+TGG | - | chr8.1:11693958-11693977 | None:intergenic | 45.0% | |
| ! | CATTGAGAAGGTTTTCGCTG+TGG | + | chr8.1:11694045-11694064 | MS.gene59641:CDS | 45.0% |
| ! | GGTAGCTCCTGTCATTGATT+GGG | + | chr8.1:11694186-11694205 | MS.gene59641:CDS | 45.0% |
| ! | GGTTTGAGGTAGTGATGCTT+TGG | - | chr8.1:11695623-11695642 | None:intergenic | 45.0% |
| ! | GGTTTTCGCTGTGGCTTATA+TGG | + | chr8.1:11694054-11694073 | MS.gene59641:CDS | 45.0% |
| ! | TAAGCGTCTCTTGTTTCGCT+CGG | - | chr8.1:11693917-11693936 | None:intergenic | 45.0% |
| !! | ACAAAGTTTTGTGCAGTGGC+AGG | + | chr8.1:11695796-11695815 | MS.gene59641:CDS | 45.0% |
| !! | AGGGACAAAGTTTTGTGCAG+TGG | + | chr8.1:11695792-11695811 | MS.gene59641:CDS | 45.0% |
| !! | CAAAGTTTTGTGCAGTGGCA+GGG | + | chr8.1:11695797-11695816 | MS.gene59641:CDS | 45.0% |
| ATTGTGATGACCGCGTTCCT+CGG | + | chr8.1:11696216-11696235 | MS.gene59641:CDS | 50.0% | |
| CAGGAGAGTCCCTTATGTTC+AGG | + | chr8.1:11695772-11695791 | MS.gene59641:CDS | 50.0% | |
| GAGATGAAAGAGAGGCCAAG+TGG | + | chr8.1:11694223-11694242 | MS.gene59641:CDS | 50.0% | |
| GTAGGGACGAGATGAAAGAG+AGG | + | chr8.1:11694215-11694234 | MS.gene59641:CDS | 50.0% | |
| GTCATGCCATAAGCACCACT+TGG | - | chr8.1:11694241-11694260 | None:intergenic | 50.0% | |
| TTTCATCTCGTCCCTACTCG+AGG | - | chr8.1:11694212-11694231 | None:intergenic | 50.0% | |
| TTTGCTGGAACTGCTTCCTC+AGG | + | chr8.1:11694361-11694380 | MS.gene59641:CDS | 50.0% | |
| ! | CATTGATTGGGCCTCGAGTA+GGG | + | chr8.1:11694198-11694217 | MS.gene59641:CDS | 50.0% |
| ! | TCATTGATTGGGCCTCGAGT+AGG | + | chr8.1:11694197-11694216 | MS.gene59641:CDS | 50.0% |
| ! | TTGGTGGTTCTGTCCTAGGT+TGG | + | chr8.1:11696250-11696269 | MS.gene59641:CDS | 50.0% |
| !! | GAGCAGGAAACTTGCTACCT+TGG | + | chr8.1:11693969-11693988 | MS.gene59641:CDS | 50.0% |
| !! | GGTTTAGCAGATGGCTTGGT+TGG | + | chr8.1:11694283-11694302 | MS.gene59641:CDS | 50.0% |
| !! | GTTCTGTCCTAGGTTGGTTC+TGG | + | chr8.1:11696256-11696275 | MS.gene59641:CDS | 50.0% |
| !! | TTAGCAGATGGCTTGGTTGG+TGG | + | chr8.1:11694286-11694305 | MS.gene59641:CDS | 50.0% |
| !! | TTGAGACCCTTTGGGGTTTG+AGG | - | chr8.1:11695637-11695656 | None:intergenic | 50.0% |
| !! | TTGGTTGGTGGTTCTGTCCT+AGG | + | chr8.1:11696246-11696265 | MS.gene59641:CDS | 50.0% |
| ATGACCGCGTTCCTCGGATT+CGG | + | chr8.1:11696222-11696241 | MS.gene59641:CDS | 55.0% | |
| CGCGCTATAGCTCCTACCTA+AGG | - | chr8.1:11694472-11694491 | None:intergenic | 55.0% | |
| CTCGAGGCCCAATCAATGAC+AGG | - | chr8.1:11694196-11694215 | None:intergenic | 55.0% | |
| GAGAGGCCAAGTGGTGCTTA+TGG | + | chr8.1:11694232-11694251 | MS.gene59641:CDS | 55.0% | |
| TGCCCCCATAATGGTAGCTG+TGG | - | chr8.1:11694800-11694819 | None:intergenic | 55.0% | |
| ! | CGATGATGAGTTGGGGAGGT+TGG | + | chr8.1:11694101-11694120 | MS.gene59641:CDS | 55.0% |
| ! | CTTGCGATGATGAGTTGGGG+AGG | + | chr8.1:11694097-11694116 | MS.gene59641:CDS | 55.0% |
| ! | TCTTGCTGTGGCAGCACCTA+TGG | - | chr8.1:11696022-11696041 | None:intergenic | 55.0% |
| !! | TTCCTCGGATTCGGCTTGGT+TGG | + | chr8.1:11696231-11696250 | MS.gene59641:CDS | 55.0% |
| CAAGCCGAATCCGAGGAACG+CGG | - | chr8.1:11696229-11696248 | None:intergenic | 60.0% | |
| CACCAACCAAGCCGAATCCG+AGG | - | chr8.1:11696236-11696255 | None:intergenic | 60.0% | |
| !! | CTCGGATTCGGCTTGGTTGG+TGG | + | chr8.1:11696234-11696253 | MS.gene59641:CDS | 60.0% |
| CGCGTTCCTCGGATTCGGCT+TGG | + | chr8.1:11696227-11696246 | MS.gene59641:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 11693884 | 11696287 | 11693884 | ID=MS.gene59641 |
| chr8.1 | mRNA | 11693884 | 11696287 | 11693884 | ID=MS.gene59641.t1;Parent=MS.gene59641 |
| chr8.1 | exon | 11693884 | 11694382 | 11693884 | ID=MS.gene59641.t1.exon1;Parent=MS.gene59641.t1 |
| chr8.1 | CDS | 11693884 | 11694382 | 11693884 | ID=cds.MS.gene59641.t1;Parent=MS.gene59641.t1 |
| chr8.1 | exon | 11695590 | 11696287 | 11695590 | ID=MS.gene59641.t1.exon2;Parent=MS.gene59641.t1 |
| chr8.1 | CDS | 11695590 | 11696287 | 11695590 | ID=cds.MS.gene59641.t1;Parent=MS.gene59641.t1 |
| Gene Sequence |
| Protein sequence |
