Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036758.t1 | XP_003609351.1 | 99 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036758.t1 | Q84XI3 | 63.5 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 2.4e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036758.t1 | G7JE40 | 99.0 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036758 | MS.gene025979 | PPI |
| MS.gene08114 | MS.gene036758 | PPI |
| MS.gene036758 | MS.gene025499 | PPI |
| MS.gene036758 | MS.gene35851 | PPI |
| MS.gene036758 | MS.gene024513 | PPI |
| MS.gene036758 | MS.gene050575 | PPI |
| MS.gene036758 | MS.gene05630 | PPI |
| MS.gene036758 | MS.gene34608 | PPI |
| MS.gene036758 | MS.gene22871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036758.t1 | MTR_4g114710 | 98.995 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 0.0 | 803 |
| MS.gene036758.t1 | MTR_0003s0470 | 49.239 | 394 | 186 | 4 | 15 | 398 | 26 | 415 | 3.02e-127 | 373 |
| MS.gene036758.t1 | MTR_3g462280 | 45.700 | 407 | 202 | 7 | 7 | 398 | 21 | 423 | 6.63e-114 | 339 |
| MS.gene036758.t1 | MTR_0008s0170 | 27.660 | 423 | 263 | 7 | 6 | 398 | 1 | 410 | 7.95e-49 | 171 |
| MS.gene036758.t1 | MTR_0008s0130 | 28.372 | 430 | 251 | 10 | 6 | 398 | 1 | 410 | 4.86e-47 | 166 |
| MS.gene036758.t1 | MTR_4g050990 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene036758.t1 | MTR_2g089520 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene036758.t1 | MTR_2g011600 | 28.671 | 429 | 250 | 12 | 7 | 398 | 10 | 419 | 1.58e-45 | 162 |
| MS.gene036758.t1 | MTR_2g047968 | 29.604 | 429 | 242 | 13 | 8 | 398 | 4 | 410 | 1.96e-41 | 152 |
| MS.gene036758.t1 | MTR_2g011580 | 27.763 | 389 | 239 | 9 | 40 | 398 | 2 | 378 | 8.40e-40 | 146 |
| MS.gene036758.t1 | MTR_2g011600 | 29.132 | 357 | 196 | 10 | 81 | 398 | 30 | 368 | 2.08e-35 | 134 |
| MS.gene036758.t1 | MTR_1g071120 | 27.616 | 344 | 199 | 9 | 13 | 324 | 50 | 375 | 1.09e-32 | 127 |
| MS.gene036758.t1 | MTR_8g007285 | 26.075 | 372 | 230 | 10 | 57 | 396 | 2 | 360 | 3.05e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036758.t1 | AT1G02630 | 63.520 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 1.52e-178 | 502 |
| MS.gene036758.t1 | AT1G02630 | 55.867 | 392 | 115 | 6 | 10 | 398 | 9 | 345 | 9.44e-146 | 417 |
| MS.gene036758.t1 | AT1G70330 | 49.114 | 395 | 186 | 4 | 16 | 398 | 59 | 450 | 3.93e-123 | 364 |
| MS.gene036758.t1 | AT3G09990 | 28.193 | 415 | 242 | 12 | 21 | 398 | 18 | 413 | 7.89e-44 | 157 |
| MS.gene036758.t1 | AT1G61630 | 27.378 | 431 | 249 | 9 | 9 | 398 | 5 | 412 | 5.81e-43 | 155 |
| MS.gene036758.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene036758.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene036758.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene036758.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene036758.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 2.72e-41 | 151 |
| MS.gene036758.t1 | AT4G05130 | 27.791 | 421 | 253 | 12 | 11 | 398 | 10 | 412 | 1.72e-40 | 149 |
| MS.gene036758.t1 | AT4G05140 | 26.744 | 430 | 259 | 12 | 5 | 398 | 4 | 413 | 5.83e-38 | 142 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGGGACCAGCTTT+TGG | 0.257914 | 8.1:+11671132 | MS.gene036758:CDS |
| TTATAATTTAGCTGATCTTA+TGG | 0.261483 | 8.1:+11671263 | MS.gene036758:CDS |
| TGCAGTGGCAGGGAAAATTA+AGG | 0.277433 | 8.1:+11671119 | MS.gene036758:CDS |
| GTTCTGTCCTAGGTTGGTTC+TGG | 0.300139 | 8.1:+11671568 | MS.gene036758:CDS |
| TCTTGAATCCAAGGCTCTTA+AGG | 0.316097 | 8.1:+11671212 | MS.gene036758:CDS |
| TAAACTGTAATCAATATAAT+AGG | 0.319839 | 8.1:-11671243 | None:intergenic |
| ACAGCTTGCATATACTGTTT+TGG | 0.330078 | 8.1:-11669649 | None:intergenic |
| TATAATTTAGCTGATCTTAT+GGG | 0.341304 | 8.1:+11671264 | MS.gene036758:CDS |
| TACATAATCCATTTCTTGCT+TGG | 0.351729 | 8.1:+11669259 | MS.gene036758:CDS |
| CAGGAGAGTCCCTTATGTTC+AGG | 0.355351 | 8.1:+11671084 | MS.gene036758:CDS |
| GTATCATCAGAGTGTACTTC+AGG | 0.361010 | 8.1:+11671065 | MS.gene036758:CDS |
| TGGTAGCTCCTGTCATTGAT+TGG | 0.376095 | 8.1:+11669497 | MS.gene036758:CDS |
| GAGAGGCCAAGTGGTGCTTA+TGG | 0.382783 | 8.1:+11669544 | MS.gene036758:CDS |
| TTGGTTGGTGGTTCTGTCCT+AGG | 0.383076 | 8.1:+11671558 | MS.gene036758:CDS |
| AAACTTTGTCCCTGAACATA+AGG | 0.390189 | 8.1:-11671094 | None:intergenic |
| TGATGATACTGCTGCATGAT+AGG | 0.394711 | 8.1:-11671051 | None:intergenic |
| CGCGTTCCTCGGATTCGGCT+TGG | 0.397450 | 8.1:+11671539 | MS.gene036758:CDS |
| TTTGTCTTCATGGACCAAAT+TGG | 0.398789 | 8.1:+11671379 | MS.gene036758:CDS |
| ACCTTCTCAATGTGGTTAGT+TGG | 0.405196 | 8.1:-11669346 | None:intergenic |
| TTCCTGCTCCAAGCAAGAAA+TGG | 0.405518 | 8.1:-11669267 | None:intergenic |
| CTCGGATTCGGCTTGGTTGG+TGG | 0.408001 | 8.1:+11671546 | MS.gene036758:CDS |
| TTGAGACCCTTTGGGGTTTG+AGG | 0.410939 | 8.1:-11670946 | None:intergenic |
| TCTTGCTGTGGCAGCACCTA+TGG | 0.413596 | 8.1:-11671331 | None:intergenic |
| AAGTGCTCACTTGTACTTCA+TGG | 0.413740 | 8.1:+11670972 | MS.gene036758:CDS |
| ATCCATTTCTTGCTTGGAGC+AGG | 0.419667 | 8.1:+11669265 | MS.gene036758:CDS |
| ATGACCGCGTTCCTCGGATT+CGG | 0.421562 | 8.1:+11671534 | MS.gene036758:CDS |
| ATGTTCCACAATGTATCAAA+AGG | 0.427242 | 8.1:+11671307 | MS.gene036758:CDS |
| TTGGTTGGTGGAAGTTTGAT+AGG | 0.433123 | 8.1:+11669610 | MS.gene036758:CDS |
| ACTTCTTGCGATGATGAGTT+GGG | 0.436575 | 8.1:+11669405 | MS.gene036758:CDS |
| TTTGCTGGAACTGCTTCCTC+AGG | 0.440158 | 8.1:+11669673 | MS.gene036758:CDS |
| ATACCAATCCTTAAGAGCCT+TGG | 0.444568 | 8.1:-11671220 | None:intergenic |
| GAGCAGGAAACTTGCTACCT+TGG | 0.445287 | 8.1:+11669281 | MS.gene036758:CDS |
| TACTTCTTGCGATGATGAGT+TGG | 0.445586 | 8.1:+11669404 | MS.gene036758:CDS |
| AGATCTTCAGCAATAAATCC+TGG | 0.450755 | 8.1:-11671192 | None:intergenic |
| GGTAGCTCCTGTCATTGATT+GGG | 0.452656 | 8.1:+11669498 | MS.gene036758:CDS |
| GCAACATAGGAGGAAAACTA+TGG | 0.455079 | 8.1:-11670998 | None:intergenic |
| ATTGTTCTTACATTTCTGCT+TGG | 0.455315 | 8.1:+11671423 | MS.gene036758:CDS |
| ATTGTGATGACCGCGTTCCT+CGG | 0.461564 | 8.1:+11671528 | MS.gene036758:CDS |
| AATGTTTGTTATGTCTCTCA+TGG | 0.465994 | 8.1:+11669477 | MS.gene036758:CDS |
| CTGAGGTTGCGAATGAACTT+AGG | 0.472940 | 8.1:+11669448 | MS.gene036758:CDS |
| GGTTTGAGGTAGTGATGCTT+TGG | 0.473253 | 8.1:-11670932 | None:intergenic |
| AGGAGAGTCCCTTATGTTCA+GGG | 0.476690 | 8.1:+11671085 | MS.gene036758:CDS |
| CGATGATGAGTTGGGGAGGT+TGG | 0.479957 | 8.1:+11669413 | MS.gene036758:CDS |
| CATTGATTGGGCCTCGAGTA+GGG | 0.484656 | 8.1:+11669510 | MS.gene036758:CDS |
| TCTGAGAAATGCACTGACTT+AGG | 0.485958 | 8.1:-11671489 | None:intergenic |
| AGAAATGTAAGAACAATCAT+TGG | 0.487588 | 8.1:-11671417 | None:intergenic |
| TCATTGATTGGGCCTCGAGT+AGG | 0.493347 | 8.1:+11669509 | MS.gene036758:CDS |
| TAAGCGTCTCTTGTTTCGCT+CGG | 0.504224 | 8.1:-11669226 | None:intergenic |
| TTCCTCGGATTCGGCTTGGT+TGG | 0.504238 | 8.1:+11671543 | MS.gene036758:CDS |
| TGCTGAAGATCTTGAATCCA+AGG | 0.504556 | 8.1:+11671203 | MS.gene036758:CDS |
| AATCCAAGGCTCTTAAGGAT+TGG | 0.505326 | 8.1:+11671217 | MS.gene036758:CDS |
| ATTATGAATATTCCAAAAGC+TGG | 0.509136 | 8.1:-11671144 | None:intergenic |
| GTTGCAGCTGTTGTAATATG+TGG | 0.509743 | 8.1:+11669574 | MS.gene036758:CDS |
| GGTTTAGCAGATGGCTTGGT+TGG | 0.510374 | 8.1:+11669595 | MS.gene036758:CDS |
| GCAGTGGCAGGGAAAATTAA+GGG | 0.512760 | 8.1:+11671120 | MS.gene036758:CDS |
| AACTTTGTCCCTGAACATAA+GGG | 0.516896 | 8.1:-11671093 | None:intergenic |
| GTATTATAATTTCAATCTTG+AGG | 0.517953 | 8.1:+11670902 | MS.gene036758:CDS |
| GTTGGTTCTGGATACTGTGA+AGG | 0.522252 | 8.1:+11671580 | MS.gene036758:CDS |
| TTGGTGGTTCTGTCCTAGGT+TGG | 0.528954 | 8.1:+11671562 | MS.gene036758:CDS |
| TTAGCAGATGGCTTGGTTGG+TGG | 0.535563 | 8.1:+11669598 | MS.gene036758:CDS |
| AACACTAGTAAGATATCCAT+TGG | 0.535884 | 8.1:-11671451 | None:intergenic |
| TCACTACCTCAAACCCCAAA+GGG | 0.535947 | 8.1:+11670940 | MS.gene036758:CDS |
| TTTCTGCTTGGATTTACCAA+TGG | 0.538009 | 8.1:+11671435 | MS.gene036758:CDS |
| GGAAGTTTGATAGGATCAGC+AGG | 0.544382 | 8.1:+11669619 | MS.gene036758:CDS |
| CAATGTATCAAAAGGGCCAT+AGG | 0.548021 | 8.1:+11671315 | MS.gene036758:CDS |
| CTCGAGGCCCAATCAATGAC+AGG | 0.549987 | 8.1:-11669505 | None:intergenic |
| ATAATTTAGCTGATCTTATG+GGG | 0.556528 | 8.1:+11671265 | MS.gene036758:CDS |
| TGTTCCACAATGTATCAAAA+GGG | 0.559037 | 8.1:+11671308 | MS.gene036758:CDS |
| GTAATATGTGGTTTAGCAGA+TGG | 0.566070 | 8.1:+11669586 | MS.gene036758:CDS |
| TGCTAAAGACAATGCAACAT+AGG | 0.569551 | 8.1:-11671011 | None:intergenic |
| GATCTTCAGCAATAAATCCT+GGG | 0.574505 | 8.1:-11671191 | None:intergenic |
| ATGTGGTTTAGCAGATGGCT+TGG | 0.575031 | 8.1:+11669591 | MS.gene036758:CDS |
| GTAACTCTATCTATCTTCCC+AGG | 0.575256 | 8.1:+11671174 | MS.gene036758:CDS |
| ACCTTGGAATGCATTTATCA+CGG | 0.589722 | 8.1:+11669297 | MS.gene036758:CDS |
| TAAAGACAATGCAACATAGG+AGG | 0.600160 | 8.1:-11671008 | None:intergenic |
| CACCAACCAAGCCGAATCCG+AGG | 0.600577 | 8.1:-11671545 | None:intergenic |
| TCCAACTAACCACATTGAGA+AGG | 0.605730 | 8.1:+11669345 | MS.gene036758:CDS |
| ATCACTACCTCAAACCCCAA+AGG | 0.611165 | 8.1:+11670939 | MS.gene036758:CDS |
| GTCATGCCATAAGCACCACT+TGG | 0.614144 | 8.1:-11669550 | None:intergenic |
| ACAGTATCCAGAACCAACCT+AGG | 0.614984 | 8.1:-11671575 | None:intergenic |
| CTTGCGATGATGAGTTGGGG+AGG | 0.619198 | 8.1:+11669409 | MS.gene036758:CDS |
| TTTCATCTCGTCCCTACTCG+AGG | 0.623295 | 8.1:-11669521 | None:intergenic |
| GTTTGATAGGATCAGCAGGA+AGG | 0.624638 | 8.1:+11669623 | MS.gene036758:CDS |
| GCCGTGATAAATGCATTCCA+AGG | 0.626474 | 8.1:-11669298 | None:intergenic |
| GTAGGGACGAGATGAAAGAG+AGG | 0.629913 | 8.1:+11669527 | MS.gene036758:CDS |
| ATAGAATAATAGTCTTGCTG+TGG | 0.649512 | 8.1:-11671343 | None:intergenic |
| CTTCTTGCGATGATGAGTTG+GGG | 0.656503 | 8.1:+11669406 | MS.gene036758:CDS |
| CAGCGAAAACCTTCTCAATG+TGG | 0.674870 | 8.1:-11669354 | None:intergenic |
| TGCTCACTTGTACTTCATGG+TGG | 0.701698 | 8.1:+11670975 | MS.gene036758:CDS |
| CAAGCCGAATCCGAGGAACG+CGG | 0.703497 | 8.1:-11671538 | None:intergenic |
| GAGATGAAAGAGAGGCCAAG+TGG | 0.710667 | 8.1:+11669535 | MS.gene036758:CDS |
| GTTGGAGTAAAACAACACTG+AGG | 0.825176 | 8.1:+11669431 | MS.gene036758:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACATATATATTAAAATT+GGG | + | chr8.1:11670627-11670646 | MS.gene036758:intron | 10.0% |
| !! | TACAACATATATATTAAAAT+TGG | + | chr8.1:11670626-11670645 | MS.gene036758:intron | 10.0% |
| !! | ATCAAGACAATTAAATTAAA+AGG | + | chr8.1:11670690-11670709 | MS.gene036758:intron | 15.0% |
| !! | TAAACTGTAATCAATATAAT+AGG | - | chr8.1:11671246-11671265 | None:intergenic | 15.0% |
| !! | TAAATCTATACCATAATTTA+TGG | + | chr8.1:11670538-11670557 | MS.gene036758:intron | 15.0% |
| !!! | TAAATTTTTTGTTACAATGA+CGG | - | chr8.1:11670269-11670288 | None:intergenic | 15.0% |
| !!! | TTTTAGATAGTAATGTAAAA+AGG | - | chr8.1:11669755-11669774 | None:intergenic | 15.0% |
| !!! | TTTTCCAAATTTCATTTTAA+AGG | + | chr8.1:11670601-11670620 | MS.gene036758:intron | 15.0% |
| !! | AAATTAGTTGCCATAAATTA+TGG | - | chr8.1:11670551-11670570 | None:intergenic | 20.0% |
| !! | ATTCATGTATAAATTCAAGT+GGG | - | chr8.1:11670217-11670236 | None:intergenic | 20.0% |
| !! | ATTTAACAACATTTCTAACT+AGG | - | chr8.1:11669815-11669834 | None:intergenic | 20.0% |
| !! | GTATTATAATTTCAATCTTG+AGG | + | chr8.1:11670902-11670921 | MS.gene036758:CDS | 20.0% |
| !! | TATAATTTAGCTGATCTTAT+GGG | + | chr8.1:11671264-11671283 | MS.gene036758:CDS | 20.0% |
| !! | TATTCATGTATAAATTCAAG+TGG | - | chr8.1:11670218-11670237 | None:intergenic | 20.0% |
| !! | TTATAATTTAGCTGATCTTA+TGG | + | chr8.1:11671263-11671282 | MS.gene036758:CDS | 20.0% |
| !!! | TATGCCTTTAAAATGAAATT+TGG | - | chr8.1:11670608-11670627 | None:intergenic | 20.0% |
| !!! | TCATATTATAATACCTTTTG+TGG | + | chr8.1:11670872-11670891 | MS.gene036758:intron | 20.0% |
| ! | AAGTATATACAAGCATTTGA+AGG | + | chr8.1:11670043-11670062 | MS.gene036758:intron | 25.0% |
| ! | AGAAATGTAAGAACAATCAT+TGG | - | chr8.1:11671420-11671439 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATCAACTATG+AGG | - | chr8.1:11669730-11669749 | None:intergenic | 25.0% |
| ! | ATAAAATACTCATTGTCGTA+TGG | - | chr8.1:11670017-11670036 | None:intergenic | 25.0% |
| ! | ATAATTTAGCTGATCTTATG+GGG | + | chr8.1:11671265-11671284 | MS.gene036758:CDS | 25.0% |
| ! | ATTATGAATATTCCAAAAGC+TGG | - | chr8.1:11671147-11671166 | None:intergenic | 25.0% |
| ! | GTAAAATTGATCAACTATGA+GGG | - | chr8.1:11669729-11669748 | None:intergenic | 25.0% |
| ! | TGAAGACAAACTATAAAAAG+TGG | - | chr8.1:11671369-11671388 | None:intergenic | 25.0% |
| !!! | CTTTTTATAGTTTGTCTTCA+TGG | + | chr8.1:11671369-11671388 | MS.gene036758:CDS | 25.0% |
| !!! | GCATTTGTCTTTTTTTCTAA+AGG | + | chr8.1:11670129-11670148 | MS.gene036758:intron | 25.0% |
| !!! | TGTCTTTTTTTCTAAAGGAT+GGG | + | chr8.1:11670134-11670153 | MS.gene036758:intron | 25.0% |
| !!! | TTGTCTTTTTTTCTAAAGGA+TGG | + | chr8.1:11670133-11670152 | MS.gene036758:intron | 25.0% |
| AAAAACTTTGCCTTAGATGA+AGG | + | chr8.1:11669966-11669985 | MS.gene036758:intron | 30.0% | |
| AACACTAGTAAGATATCCAT+TGG | - | chr8.1:11671454-11671473 | None:intergenic | 30.0% | |
| ATACAAGCATTTGAAGGTTA+AGG | + | chr8.1:11670049-11670068 | MS.gene036758:intron | 30.0% | |
| ATGTTCCACAATGTATCAAA+AGG | + | chr8.1:11671307-11671326 | MS.gene036758:CDS | 30.0% | |
| ATTGTTCTTACATTTCTGCT+TGG | + | chr8.1:11671423-11671442 | MS.gene036758:CDS | 30.0% | |
| CCTTATTCGAACAAATTCTA+AGG | + | chr8.1:11669937-11669956 | MS.gene036758:intron | 30.0% | |
| TACAAGCATTTGAAGGTTAA+GGG | + | chr8.1:11670050-11670069 | MS.gene036758:intron | 30.0% | |
| TACATAATCCATTTCTTGCT+TGG | + | chr8.1:11669259-11669278 | MS.gene036758:CDS | 30.0% | |
| TGTTCCACAATGTATCAAAA+GGG | + | chr8.1:11671308-11671327 | MS.gene036758:CDS | 30.0% | |
| TTTCATGTATCCTTCATCTA+AGG | - | chr8.1:11669979-11669998 | None:intergenic | 30.0% | |
| ! | ACTTCTGTTTTCAACCAATT+TGG | - | chr8.1:11671396-11671415 | None:intergenic | 30.0% |
| ! | ATAGAATAATAGTCTTGCTG+TGG | - | chr8.1:11671346-11671365 | None:intergenic | 30.0% |
| ! | CCTTAGAATTTGTTCGAATA+AGG | - | chr8.1:11669940-11669959 | None:intergenic | 30.0% |
| ! | CTATCTAAAACAATGTCCTT+AGG | + | chr8.1:11669765-11669784 | MS.gene036758:intron | 30.0% |
| ! | TTGTGTTGTAATTTTACCTG+AGG | - | chr8.1:11669692-11669711 | None:intergenic | 30.0% |
| ! | TTTGCTAGGTTATAGTTTGT+AGG | + | chr8.1:11670430-11670449 | MS.gene036758:intron | 30.0% |
| !! | AATGTTTGTTATGTCTCTCA+TGG | + | chr8.1:11669477-11669496 | MS.gene036758:CDS | 30.0% |
| !! | CATAGTTTTGCTAGATGTAT+AGG | - | chr8.1:11670351-11670370 | None:intergenic | 30.0% |
| !!! | CTTAAAGAATTTTGAAGCTG+TGG | + | chr8.1:11670381-11670400 | MS.gene036758:intron | 30.0% |
| !!! | GTCTTTTTTTCTAAAGGATG+GGG | + | chr8.1:11670135-11670154 | MS.gene036758:intron | 30.0% |
| !!! | TCTTTTTTTCTAAAGGATGG+GGG | + | chr8.1:11670136-11670155 | MS.gene036758:intron | 30.0% |
| AAACTTTGTCCCTGAACATA+AGG | - | chr8.1:11671097-11671116 | None:intergenic | 35.0% | |
| AACTTTGTCCCTGAACATAA+GGG | - | chr8.1:11671096-11671115 | None:intergenic | 35.0% | |
| ACCTTGGAATGCATTTATCA+CGG | + | chr8.1:11669297-11669316 | MS.gene036758:CDS | 35.0% | |
| AGATCTTCAGCAATAAATCC+TGG | - | chr8.1:11671195-11671214 | None:intergenic | 35.0% | |
| ATTGACAACACTGATACAAG+AGG | + | chr8.1:11669901-11669920 | MS.gene036758:intron | 35.0% | |
| CTAAAACAATGTCCTTAGGT+AGG | + | chr8.1:11669769-11669788 | MS.gene036758:intron | 35.0% | |
| GATCTGACCAAAATAAGTAG+AGG | - | chr8.1:11670475-11670494 | None:intergenic | 35.0% | |
| GATCTTCAGCAATAAATCCT+GGG | - | chr8.1:11671194-11671213 | None:intergenic | 35.0% | |
| GGAAAGTAGATTCTAGATCA+TGG | + | chr8.1:11670080-11670099 | MS.gene036758:intron | 35.0% | |
| GTAATATGTGGTTTAGCAGA+TGG | + | chr8.1:11669586-11669605 | MS.gene036758:CDS | 35.0% | |
| TAAAGACAATGCAACATAGG+AGG | - | chr8.1:11671011-11671030 | None:intergenic | 35.0% | |
| TAATACCTGTCAACCACAAA+AGG | - | chr8.1:11670888-11670907 | None:intergenic | 35.0% | |
| TAGGAGGGACTAAAATTTGA+TGG | + | chr8.1:11670449-11670468 | MS.gene036758:intron | 35.0% | |
| TATCTATCCGAACATACTAG+CGG | - | chr8.1:11670806-11670825 | None:intergenic | 35.0% | |
| TGCTAAAGACAATGCAACAT+AGG | - | chr8.1:11671014-11671033 | None:intergenic | 35.0% | |
| TTGAAGGTTAAGGGAGAAAA+AGG | + | chr8.1:11670059-11670078 | MS.gene036758:intron | 35.0% | |
| TTTCTGCTTGGATTTACCAA+TGG | + | chr8.1:11671435-11671454 | MS.gene036758:CDS | 35.0% | |
| TTTGTCTTCATGGACCAAAT+TGG | + | chr8.1:11671379-11671398 | MS.gene036758:CDS | 35.0% | |
| ! | AAAATTAAGGGACCAGCTTT+TGG | + | chr8.1:11671132-11671151 | MS.gene036758:CDS | 35.0% |
| ! | ACAGCTTGCATATACTGTTT+TGG | - | chr8.1:11669652-11669671 | None:intergenic | 35.0% |
| ! | CTAGGTTATAGTTTGTAGGA+GGG | + | chr8.1:11670434-11670453 | MS.gene036758:intron | 35.0% |
| ! | TAATACCTTTTGTGGTTGAC+AGG | + | chr8.1:11670880-11670899 | MS.gene036758:intron | 35.0% |
| !! | TTGATGGCCTCTACTTATTT+TGG | + | chr8.1:11670465-11670484 | MS.gene036758:intron | 35.0% |
| !!! | ACTTATTTTGAGACCCTTTG+GGG | - | chr8.1:11670956-11670975 | None:intergenic | 35.0% |
| !!! | CACTTATTTTGAGACCCTTT+GGG | - | chr8.1:11670957-11670976 | None:intergenic | 35.0% |
| !!! | TATATGCAAGCTGTTTTTGC+TGG | + | chr8.1:11669658-11669677 | MS.gene036758:CDS | 35.0% |
| AAAGACAAATGCCCCCATAA+TGG | - | chr8.1:11670121-11670140 | None:intergenic | 40.0% | |
| AAGTGCTCACTTGTACTTCA+TGG | + | chr8.1:11670972-11670991 | MS.gene036758:CDS | 40.0% | |
| AATCCAAGGCTCTTAAGGAT+TGG | + | chr8.1:11671217-11671236 | MS.gene036758:CDS | 40.0% | |
| ACCTTCTCAATGTGGTTAGT+TGG | - | chr8.1:11669349-11669368 | None:intergenic | 40.0% | |
| ACTTCTTGCGATGATGAGTT+GGG | + | chr8.1:11669405-11669424 | MS.gene036758:CDS | 40.0% | |
| AGATCCACAGCTACCATTAT+GGG | + | chr8.1:11670105-11670124 | MS.gene036758:intron | 40.0% | |
| ATACCAATCCTTAAGAGCCT+TGG | - | chr8.1:11671223-11671242 | None:intergenic | 40.0% | |
| CAATGTATCAAAAGGGCCAT+AGG | + | chr8.1:11671315-11671334 | MS.gene036758:CDS | 40.0% | |
| CATCTTTCCGCTAGTATGTT+CGG | + | chr8.1:11670796-11670815 | MS.gene036758:intron | 40.0% | |
| GCAACATAGGAGGAAAACTA+TGG | - | chr8.1:11671001-11671020 | None:intergenic | 40.0% | |
| GTAACTCTATCTATCTTCCC+AGG | + | chr8.1:11671174-11671193 | MS.gene036758:CDS | 40.0% | |
| GTATCATCAGAGTGTACTTC+AGG | + | chr8.1:11671065-11671084 | MS.gene036758:CDS | 40.0% | |
| GTTGCAGCTGTTGTAATATG+TGG | + | chr8.1:11669574-11669593 | MS.gene036758:CDS | 40.0% | |
| GTTGGAGTAAAACAACACTG+AGG | + | chr8.1:11669431-11669450 | MS.gene036758:CDS | 40.0% | |
| TACTTCTTGCGATGATGAGT+TGG | + | chr8.1:11669404-11669423 | MS.gene036758:CDS | 40.0% | |
| TCCAACTAACCACATTGAGA+AGG | + | chr8.1:11669345-11669364 | MS.gene036758:CDS | 40.0% | |
| TCTTGAATCCAAGGCTCTTA+AGG | + | chr8.1:11671212-11671231 | MS.gene036758:CDS | 40.0% | |
| TGATGATACTGCTGCATGAT+AGG | - | chr8.1:11671054-11671073 | None:intergenic | 40.0% | |
| TGCTGAAGATCTTGAATCCA+AGG | + | chr8.1:11671203-11671222 | MS.gene036758:CDS | 40.0% | |
| ! | ATGGCCCTTTTGATACATTG+TGG | - | chr8.1:11671315-11671334 | None:intergenic | 40.0% |
| ! | GCTAGGTTATAGTTTGTAGG+AGG | + | chr8.1:11670433-11670452 | MS.gene036758:intron | 40.0% |
| !! | ACTGCTTTTCTTGCTTTGCT+AGG | + | chr8.1:11670416-11670435 | MS.gene036758:intron | 40.0% |
| !! | TCTGAGAAATGCACTGACTT+AGG | - | chr8.1:11671492-11671511 | None:intergenic | 40.0% |
| !! | TTGGTTGGTGGAAGTTTGAT+AGG | + | chr8.1:11669610-11669629 | MS.gene036758:CDS | 40.0% |
| !!! | GCACTTATTTTGAGACCCTT+TGG | - | chr8.1:11670958-11670977 | None:intergenic | 40.0% |
| ACAGTATCCAGAACCAACCT+AGG | - | chr8.1:11671578-11671597 | None:intergenic | 45.0% | |
| AGGAGAGTCCCTTATGTTCA+GGG | + | chr8.1:11671085-11671104 | MS.gene036758:CDS | 45.0% | |
| ATCACTACCTCAAACCCCAA+AGG | + | chr8.1:11670939-11670958 | MS.gene036758:CDS | 45.0% | |
| ATCCACAGCTACCATTATGG+GGG | + | chr8.1:11670107-11670126 | MS.gene036758:intron | 45.0% | |
| ATCCATTTCTTGCTTGGAGC+AGG | + | chr8.1:11669265-11669284 | MS.gene036758:CDS | 45.0% | |
| ATGTGGTTTAGCAGATGGCT+TGG | + | chr8.1:11669591-11669610 | MS.gene036758:CDS | 45.0% | |
| CAGATCCACAGCTACCATTA+TGG | + | chr8.1:11670104-11670123 | MS.gene036758:intron | 45.0% | |
| CAGCGAAAACCTTCTCAATG+TGG | - | chr8.1:11669357-11669376 | None:intergenic | 45.0% | |
| CTGAGGTTGCGAATGAACTT+AGG | + | chr8.1:11669448-11669467 | MS.gene036758:CDS | 45.0% | |
| CTTCTTGCGATGATGAGTTG+GGG | + | chr8.1:11669406-11669425 | MS.gene036758:CDS | 45.0% | |
| GATCCACAGCTACCATTATG+GGG | + | chr8.1:11670106-11670125 | MS.gene036758:intron | 45.0% | |
| GCAGTGGCAGGGAAAATTAA+GGG | + | chr8.1:11671120-11671139 | MS.gene036758:CDS | 45.0% | |
| GCCGTGATAAATGCATTCCA+AGG | - | chr8.1:11669301-11669320 | None:intergenic | 45.0% | |
| GGAAGTTTGATAGGATCAGC+AGG | + | chr8.1:11669619-11669638 | MS.gene036758:CDS | 45.0% | |
| GTTTGATAGGATCAGCAGGA+AGG | + | chr8.1:11669623-11669642 | MS.gene036758:CDS | 45.0% | |
| TCACTACCTCAAACCCCAAA+GGG | + | chr8.1:11670940-11670959 | MS.gene036758:CDS | 45.0% | |
| TGCAGTGGCAGGGAAAATTA+AGG | + | chr8.1:11671119-11671138 | MS.gene036758:CDS | 45.0% | |
| TGCTCACTTGTACTTCATGG+TGG | + | chr8.1:11670975-11670994 | MS.gene036758:CDS | 45.0% | |
| TGGTAGCTCCTGTCATTGAT+TGG | + | chr8.1:11669497-11669516 | MS.gene036758:CDS | 45.0% | |
| TTCCTGCTCCAAGCAAGAAA+TGG | - | chr8.1:11669270-11669289 | None:intergenic | 45.0% | |
| ! | CATTGAGAAGGTTTTCGCTG+TGG | + | chr8.1:11669357-11669376 | MS.gene036758:CDS | 45.0% |
| ! | GGTAGCTCCTGTCATTGATT+GGG | + | chr8.1:11669498-11669517 | MS.gene036758:CDS | 45.0% |
| ! | GGTTTGAGGTAGTGATGCTT+TGG | - | chr8.1:11670935-11670954 | None:intergenic | 45.0% |
| ! | GGTTTTCGCTGTGGCTTATA+TGG | + | chr8.1:11669366-11669385 | MS.gene036758:CDS | 45.0% |
| ! | TAAGCGTCTCTTGTTTCGCT+CGG | - | chr8.1:11669229-11669248 | None:intergenic | 45.0% |
| !! | ACAAAGTTTTGTGCAGTGGC+AGG | + | chr8.1:11671108-11671127 | MS.gene036758:CDS | 45.0% |
| !! | AGGGACAAAGTTTTGTGCAG+TGG | + | chr8.1:11671104-11671123 | MS.gene036758:CDS | 45.0% |
| !! | CAAAGTTTTGTGCAGTGGCA+GGG | + | chr8.1:11671109-11671128 | MS.gene036758:CDS | 45.0% |
| ATTGTGATGACCGCGTTCCT+CGG | + | chr8.1:11671528-11671547 | MS.gene036758:CDS | 50.0% | |
| CAGGAGAGTCCCTTATGTTC+AGG | + | chr8.1:11671084-11671103 | MS.gene036758:CDS | 50.0% | |
| GAGATGAAAGAGAGGCCAAG+TGG | + | chr8.1:11669535-11669554 | MS.gene036758:CDS | 50.0% | |
| GTAGGGACGAGATGAAAGAG+AGG | + | chr8.1:11669527-11669546 | MS.gene036758:CDS | 50.0% | |
| GTCATGCCATAAGCACCACT+TGG | - | chr8.1:11669553-11669572 | None:intergenic | 50.0% | |
| TTTCATCTCGTCCCTACTCG+AGG | - | chr8.1:11669524-11669543 | None:intergenic | 50.0% | |
| TTTGCTGGAACTGCTTCCTC+AGG | + | chr8.1:11669673-11669692 | MS.gene036758:CDS | 50.0% | |
| ! | CATTGATTGGGCCTCGAGTA+GGG | + | chr8.1:11669510-11669529 | MS.gene036758:CDS | 50.0% |
| ! | TCATTGATTGGGCCTCGAGT+AGG | + | chr8.1:11669509-11669528 | MS.gene036758:CDS | 50.0% |
| ! | TTGGTGGTTCTGTCCTAGGT+TGG | + | chr8.1:11671562-11671581 | MS.gene036758:CDS | 50.0% |
| !! | GAGCAGGAAACTTGCTACCT+TGG | + | chr8.1:11669281-11669300 | MS.gene036758:CDS | 50.0% |
| !! | GGTTTAGCAGATGGCTTGGT+TGG | + | chr8.1:11669595-11669614 | MS.gene036758:CDS | 50.0% |
| !! | GTTCTGTCCTAGGTTGGTTC+TGG | + | chr8.1:11671568-11671587 | MS.gene036758:CDS | 50.0% |
| !! | TTAGCAGATGGCTTGGTTGG+TGG | + | chr8.1:11669598-11669617 | MS.gene036758:CDS | 50.0% |
| !! | TTGAGACCCTTTGGGGTTTG+AGG | - | chr8.1:11670949-11670968 | None:intergenic | 50.0% |
| !! | TTGGTTGGTGGTTCTGTCCT+AGG | + | chr8.1:11671558-11671577 | MS.gene036758:CDS | 50.0% |
| ATGACCGCGTTCCTCGGATT+CGG | + | chr8.1:11671534-11671553 | MS.gene036758:CDS | 55.0% | |
| CGCGCTATAGCTCCTACCTA+AGG | - | chr8.1:11669784-11669803 | None:intergenic | 55.0% | |
| CTCGAGGCCCAATCAATGAC+AGG | - | chr8.1:11669508-11669527 | None:intergenic | 55.0% | |
| GAGAGGCCAAGTGGTGCTTA+TGG | + | chr8.1:11669544-11669563 | MS.gene036758:CDS | 55.0% | |
| TGCCCCCATAATGGTAGCTG+TGG | - | chr8.1:11670112-11670131 | None:intergenic | 55.0% | |
| ! | CGATGATGAGTTGGGGAGGT+TGG | + | chr8.1:11669413-11669432 | MS.gene036758:CDS | 55.0% |
| ! | CTTGCGATGATGAGTTGGGG+AGG | + | chr8.1:11669409-11669428 | MS.gene036758:CDS | 55.0% |
| ! | TCTTGCTGTGGCAGCACCTA+TGG | - | chr8.1:11671334-11671353 | None:intergenic | 55.0% |
| !! | TTCCTCGGATTCGGCTTGGT+TGG | + | chr8.1:11671543-11671562 | MS.gene036758:CDS | 55.0% |
| CAAGCCGAATCCGAGGAACG+CGG | - | chr8.1:11671541-11671560 | None:intergenic | 60.0% | |
| CACCAACCAAGCCGAATCCG+AGG | - | chr8.1:11671548-11671567 | None:intergenic | 60.0% | |
| !! | CTCGGATTCGGCTTGGTTGG+TGG | + | chr8.1:11671546-11671565 | MS.gene036758:CDS | 60.0% |
| CGCGTTCCTCGGATTCGGCT+TGG | + | chr8.1:11671539-11671558 | MS.gene036758:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 11669196 | 11671599 | 11669196 | ID=MS.gene036758 |
| chr8.1 | mRNA | 11669196 | 11671599 | 11669196 | ID=MS.gene036758.t1;Parent=MS.gene036758 |
| chr8.1 | exon | 11669196 | 11669694 | 11669196 | ID=MS.gene036758.t1.exon1;Parent=MS.gene036758.t1 |
| chr8.1 | CDS | 11669196 | 11669694 | 11669196 | ID=cds.MS.gene036758.t1;Parent=MS.gene036758.t1 |
| chr8.1 | exon | 11670902 | 11671599 | 11670902 | ID=MS.gene036758.t1.exon2;Parent=MS.gene036758.t1 |
| chr8.1 | CDS | 11670902 | 11671599 | 11670902 | ID=cds.MS.gene036758.t1;Parent=MS.gene036758.t1 |
| Gene Sequence |
| Protein sequence |
