Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59944.t1 | XP_003609351.1 | 99 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59944.t1 | Q84XI3 | 63.5 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 2.4e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59944.t1 | G7JE40 | 99.0 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051648 | MS.gene59944 | 0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene05894 | MS.gene59944 | 0.804969 | 1.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59944 | MS.gene050575 | PPI |
| MS.gene59944 | MS.gene05630 | PPI |
| MS.gene59944 | MS.gene34608 | PPI |
| MS.gene59944 | MS.gene22871 | PPI |
| MS.gene59944 | MS.gene025979 | PPI |
| MS.gene59944 | MS.gene025499 | PPI |
| MS.gene59944 | MS.gene35851 | PPI |
| MS.gene08114 | MS.gene59944 | PPI |
| MS.gene59944 | MS.gene024513 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59944.t1 | MTR_4g114710 | 98.995 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 0.0 | 803 |
| MS.gene59944.t1 | MTR_0003s0470 | 49.239 | 394 | 186 | 4 | 15 | 398 | 26 | 415 | 3.02e-127 | 373 |
| MS.gene59944.t1 | MTR_3g462280 | 45.700 | 407 | 202 | 7 | 7 | 398 | 21 | 423 | 6.63e-114 | 339 |
| MS.gene59944.t1 | MTR_0008s0170 | 27.660 | 423 | 263 | 7 | 6 | 398 | 1 | 410 | 7.95e-49 | 171 |
| MS.gene59944.t1 | MTR_0008s0130 | 28.372 | 430 | 251 | 10 | 6 | 398 | 1 | 410 | 4.86e-47 | 166 |
| MS.gene59944.t1 | MTR_4g050990 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene59944.t1 | MTR_2g089520 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene59944.t1 | MTR_2g011600 | 28.671 | 429 | 250 | 12 | 7 | 398 | 10 | 419 | 1.58e-45 | 162 |
| MS.gene59944.t1 | MTR_2g047968 | 29.604 | 429 | 242 | 13 | 8 | 398 | 4 | 410 | 1.96e-41 | 152 |
| MS.gene59944.t1 | MTR_2g011580 | 27.763 | 389 | 239 | 9 | 40 | 398 | 2 | 378 | 8.40e-40 | 146 |
| MS.gene59944.t1 | MTR_2g011600 | 29.132 | 357 | 196 | 10 | 81 | 398 | 30 | 368 | 2.08e-35 | 134 |
| MS.gene59944.t1 | MTR_1g071120 | 27.616 | 344 | 199 | 9 | 13 | 324 | 50 | 375 | 1.09e-32 | 127 |
| MS.gene59944.t1 | MTR_8g007285 | 26.075 | 372 | 230 | 10 | 57 | 396 | 2 | 360 | 3.05e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59944.t1 | AT1G02630 | 63.520 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 1.52e-178 | 502 |
| MS.gene59944.t1 | AT1G02630 | 55.867 | 392 | 115 | 6 | 10 | 398 | 9 | 345 | 9.44e-146 | 417 |
| MS.gene59944.t1 | AT1G70330 | 49.114 | 395 | 186 | 4 | 16 | 398 | 59 | 450 | 3.93e-123 | 364 |
| MS.gene59944.t1 | AT3G09990 | 28.193 | 415 | 242 | 12 | 21 | 398 | 18 | 413 | 7.89e-44 | 157 |
| MS.gene59944.t1 | AT1G61630 | 27.378 | 431 | 249 | 9 | 9 | 398 | 5 | 412 | 5.81e-43 | 155 |
| MS.gene59944.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene59944.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene59944.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene59944.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene59944.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 2.72e-41 | 151 |
| MS.gene59944.t1 | AT4G05130 | 27.791 | 421 | 253 | 12 | 11 | 398 | 10 | 412 | 1.72e-40 | 149 |
| MS.gene59944.t1 | AT4G05140 | 26.744 | 430 | 259 | 12 | 5 | 398 | 4 | 413 | 5.83e-38 | 142 |
Find 93 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGGGACCAGCTTT+TGG | 0.257914 | 8.3:+12725546 | MS.gene59944:CDS |
| TTATAATTTAGCTGATCTTA+TGG | 0.261483 | 8.3:+12725677 | MS.gene59944:CDS |
| TGCAGTGGCAGGGAAAATTA+AGG | 0.277433 | 8.3:+12725533 | MS.gene59944:CDS |
| GTTCTGTCCTAGGTTGGTTC+TGG | 0.300139 | 8.3:+12725982 | MS.gene59944:CDS |
| TCTTGAATCCAAGGCTCTTA+AGG | 0.316097 | 8.3:+12725626 | MS.gene59944:CDS |
| TAAACTGTAATCAATATAAT+AGG | 0.319839 | 8.3:-12725657 | None:intergenic |
| ACAGCTTGCATATACTGTTT+TGG | 0.330078 | 8.3:-12724063 | None:intergenic |
| TATAATTTAGCTGATCTTAT+GGG | 0.341304 | 8.3:+12725678 | MS.gene59944:CDS |
| TACATAATCCATTTCTTGCT+TGG | 0.351729 | 8.3:+12723673 | MS.gene59944:CDS |
| CAGGAGAGTCCCTTATGTTC+AGG | 0.355351 | 8.3:+12725498 | MS.gene59944:CDS |
| GTATCATCAGAGTGTACTTC+AGG | 0.361010 | 8.3:+12725479 | MS.gene59944:CDS |
| ATCACTTGATGCTAGCTTAA+CGG | 0.372314 | 8.3:-12723617 | None:intergenic |
| TGGTAGCTCCTGTCATTGAT+TGG | 0.376095 | 8.3:+12723911 | MS.gene59944:CDS |
| GAGAGGCCAAGTGGTGCTTA+TGG | 0.382783 | 8.3:+12723958 | MS.gene59944:CDS |
| TTGGTTGGTGGTTCTGTCCT+AGG | 0.383076 | 8.3:+12725972 | MS.gene59944:CDS |
| AAACTTTGTCCCTGAACATA+AGG | 0.390189 | 8.3:-12725508 | None:intergenic |
| TGATGATACTGCTGCATGAT+AGG | 0.394711 | 8.3:-12725465 | None:intergenic |
| CGCGTTCCTCGGATTCGGCT+TGG | 0.397450 | 8.3:+12725953 | MS.gene59944:CDS |
| TTTGTCTTCATGGACCAAAT+TGG | 0.398789 | 8.3:+12725793 | MS.gene59944:CDS |
| ACCTTCTCAATGTGGTTAGT+TGG | 0.405196 | 8.3:-12723760 | None:intergenic |
| TTCCTGCTCCAAGCAAGAAA+TGG | 0.405518 | 8.3:-12723681 | None:intergenic |
| CTCGGATTCGGCTTGGTTGG+TGG | 0.408001 | 8.3:+12725960 | MS.gene59944:CDS |
| TTGAGACCCTTTGGGGTTTG+AGG | 0.410939 | 8.3:-12725360 | None:intergenic |
| TCTTGCTGTGGCAGCACCTA+TGG | 0.413596 | 8.3:-12725745 | None:intergenic |
| AAGTGCTCACTTGTACTTCA+TGG | 0.413740 | 8.3:+12725386 | MS.gene59944:CDS |
| ATCCATTTCTTGCTTGGAGC+AGG | 0.419667 | 8.3:+12723679 | MS.gene59944:CDS |
| ATGACCGCGTTCCTCGGATT+CGG | 0.421562 | 8.3:+12725948 | MS.gene59944:CDS |
| ATGTTCCACAATGTATCAAA+AGG | 0.427242 | 8.3:+12725721 | MS.gene59944:CDS |
| TTGGTTGGTGGAAGTTTGAT+AGG | 0.433123 | 8.3:+12724024 | MS.gene59944:CDS |
| ACTTCTTGCGATGATGAGTT+GGG | 0.436575 | 8.3:+12723819 | MS.gene59944:CDS |
| TTTGCTGGAACTGCTTCCTC+AGG | 0.440158 | 8.3:+12724087 | MS.gene59944:CDS |
| ATACCAATCCTTAAGAGCCT+TGG | 0.444568 | 8.3:-12725634 | None:intergenic |
| GAGCAGGAAACTTGCTACCT+TGG | 0.445287 | 8.3:+12723695 | MS.gene59944:CDS |
| TACTTCTTGCGATGATGAGT+TGG | 0.445586 | 8.3:+12723818 | MS.gene59944:CDS |
| AGATCTTCAGCAATAAATCC+TGG | 0.450755 | 8.3:-12725606 | None:intergenic |
| GGTAGCTCCTGTCATTGATT+GGG | 0.452656 | 8.3:+12723912 | MS.gene59944:CDS |
| GCAACATAGGAGGAAAACTA+TGG | 0.455079 | 8.3:-12725412 | None:intergenic |
| ATTGTTCTTACATTTCTGCT+TGG | 0.455315 | 8.3:+12725837 | MS.gene59944:CDS |
| ATTGTGATGACCGCGTTCCT+CGG | 0.461564 | 8.3:+12725942 | MS.gene59944:CDS |
| AATGTTTGTTATGTCTCTCA+TGG | 0.465994 | 8.3:+12723891 | MS.gene59944:CDS |
| CTGAGGTTGCGAATGAACTT+AGG | 0.472940 | 8.3:+12723862 | MS.gene59944:CDS |
| GGTTTGAGGTAGTGATGCTT+TGG | 0.473253 | 8.3:-12725346 | None:intergenic |
| AGGAGAGTCCCTTATGTTCA+GGG | 0.476690 | 8.3:+12725499 | MS.gene59944:CDS |
| CGATGATGAGTTGGGGAGGT+TGG | 0.479957 | 8.3:+12723827 | MS.gene59944:CDS |
| CATTGATTGGGCCTCGAGTA+GGG | 0.484656 | 8.3:+12723924 | MS.gene59944:CDS |
| TCTGAGAAATGCACTGACTT+AGG | 0.485958 | 8.3:-12725903 | None:intergenic |
| AGAAATGTAAGAACAATCAT+TGG | 0.487588 | 8.3:-12725831 | None:intergenic |
| TCATTGATTGGGCCTCGAGT+AGG | 0.493347 | 8.3:+12723923 | MS.gene59944:CDS |
| TAAGCGTCTCTTGTTTCGCT+CGG | 0.504224 | 8.3:-12723640 | None:intergenic |
| TTCCTCGGATTCGGCTTGGT+TGG | 0.504238 | 8.3:+12725957 | MS.gene59944:CDS |
| TGCTGAAGATCTTGAATCCA+AGG | 0.504556 | 8.3:+12725617 | MS.gene59944:CDS |
| AATCCAAGGCTCTTAAGGAT+TGG | 0.505326 | 8.3:+12725631 | MS.gene59944:CDS |
| ATTATGAATATTCCAAAAGC+TGG | 0.509136 | 8.3:-12725558 | None:intergenic |
| GTTGCAGCTGTTGTAATATG+TGG | 0.509743 | 8.3:+12723988 | MS.gene59944:CDS |
| GGTTTAGCAGATGGCTTGGT+TGG | 0.510374 | 8.3:+12724009 | MS.gene59944:CDS |
| GCAGTGGCAGGGAAAATTAA+GGG | 0.512760 | 8.3:+12725534 | MS.gene59944:CDS |
| AACTTTGTCCCTGAACATAA+GGG | 0.516896 | 8.3:-12725507 | None:intergenic |
| GTATTATAATTTCAATCTTG+AGG | 0.517953 | 8.3:+12725316 | MS.gene59944:CDS |
| GTTGGTTCTGGATACTGTGA+AGG | 0.522252 | 8.3:+12725994 | MS.gene59944:CDS |
| TTGGTGGTTCTGTCCTAGGT+TGG | 0.528954 | 8.3:+12725976 | MS.gene59944:CDS |
| TTAGCAGATGGCTTGGTTGG+TGG | 0.535563 | 8.3:+12724012 | MS.gene59944:CDS |
| AACACTAGTAAGATATCCAT+TGG | 0.535884 | 8.3:-12725865 | None:intergenic |
| TCACTACCTCAAACCCCAAA+GGG | 0.535947 | 8.3:+12725354 | MS.gene59944:CDS |
| TTTCTGCTTGGATTTACCAA+TGG | 0.538009 | 8.3:+12725849 | MS.gene59944:CDS |
| GGAAGTTTGATAGGATCAGC+AGG | 0.544382 | 8.3:+12724033 | MS.gene59944:CDS |
| CAATGTATCAAAAGGGCCAT+AGG | 0.548021 | 8.3:+12725729 | MS.gene59944:CDS |
| CTCGAGGCCCAATCAATGAC+AGG | 0.549987 | 8.3:-12723919 | None:intergenic |
| ATAATTTAGCTGATCTTATG+GGG | 0.556528 | 8.3:+12725679 | MS.gene59944:CDS |
| TGTTCCACAATGTATCAAAA+GGG | 0.559037 | 8.3:+12725722 | MS.gene59944:CDS |
| GTAATATGTGGTTTAGCAGA+TGG | 0.566070 | 8.3:+12724000 | MS.gene59944:CDS |
| TGCTAAAGACAATGCAACAT+AGG | 0.569551 | 8.3:-12725425 | None:intergenic |
| GATCTTCAGCAATAAATCCT+GGG | 0.574505 | 8.3:-12725605 | None:intergenic |
| ATGTGGTTTAGCAGATGGCT+TGG | 0.575031 | 8.3:+12724005 | MS.gene59944:CDS |
| GTAACTCTATCTATCTTCCC+AGG | 0.575256 | 8.3:+12725588 | MS.gene59944:CDS |
| ACCTTGGAATGCATTTATCA+CGG | 0.589722 | 8.3:+12723711 | MS.gene59944:CDS |
| TAAAGACAATGCAACATAGG+AGG | 0.600160 | 8.3:-12725422 | None:intergenic |
| CACCAACCAAGCCGAATCCG+AGG | 0.600577 | 8.3:-12725959 | None:intergenic |
| TCCAACTAACCACATTGAGA+AGG | 0.605730 | 8.3:+12723759 | MS.gene59944:CDS |
| ATCACTACCTCAAACCCCAA+AGG | 0.611165 | 8.3:+12725353 | MS.gene59944:CDS |
| GTCATGCCATAAGCACCACT+TGG | 0.614144 | 8.3:-12723964 | None:intergenic |
| ACAGTATCCAGAACCAACCT+AGG | 0.614984 | 8.3:-12725989 | None:intergenic |
| CTTGCGATGATGAGTTGGGG+AGG | 0.619198 | 8.3:+12723823 | MS.gene59944:CDS |
| TTTCATCTCGTCCCTACTCG+AGG | 0.623295 | 8.3:-12723935 | None:intergenic |
| GTTTGATAGGATCAGCAGGA+AGG | 0.624638 | 8.3:+12724037 | MS.gene59944:CDS |
| GCCGTGATAAATGCATTCCA+AGG | 0.626474 | 8.3:-12723712 | None:intergenic |
| GTAGGGACGAGATGAAAGAG+AGG | 0.629913 | 8.3:+12723941 | MS.gene59944:CDS |
| ATAGAATAATAGTCTTGCTG+TGG | 0.649512 | 8.3:-12725757 | None:intergenic |
| CTTCTTGCGATGATGAGTTG+GGG | 0.656503 | 8.3:+12723820 | MS.gene59944:CDS |
| CAGCGAAAACCTTCTCAATG+TGG | 0.674870 | 8.3:-12723768 | None:intergenic |
| TGCTCACTTGTACTTCATGG+TGG | 0.701698 | 8.3:+12725389 | MS.gene59944:CDS |
| CAAGCCGAATCCGAGGAACG+CGG | 0.703497 | 8.3:-12725952 | None:intergenic |
| GAGATGAAAGAGAGGCCAAG+TGG | 0.710667 | 8.3:+12723949 | MS.gene59944:CDS |
| GTTGGAGTAAAACAACACTG+AGG | 0.825176 | 8.3:+12723845 | MS.gene59944:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACATATATATTAAAATT+GGG | + | chr8.3:12725041-12725060 | MS.gene59944:intron | 10.0% |
| !! | TACAACATATATATTAAAAT+TGG | + | chr8.3:12725040-12725059 | MS.gene59944:intron | 10.0% |
| !! | ATCAAGACAATTAAATTAAA+AGG | + | chr8.3:12725104-12725123 | MS.gene59944:intron | 15.0% |
| !! | TAAACTGTAATCAATATAAT+AGG | - | chr8.3:12725660-12725679 | None:intergenic | 15.0% |
| !! | TAAATCTATACCATAATTTA+TGG | + | chr8.3:12724952-12724971 | MS.gene59944:intron | 15.0% |
| !!! | TAAATTTTTTGTTACAATGA+CGG | - | chr8.3:12724683-12724702 | None:intergenic | 15.0% |
| !!! | TTTTAGATAGTAATGTAAAA+AGG | - | chr8.3:12724169-12724188 | None:intergenic | 15.0% |
| !!! | TTTTCCAAATTTCATTTTAA+AGG | + | chr8.3:12725015-12725034 | MS.gene59944:intron | 15.0% |
| !! | AAATTAGTTGCCATAAATTA+TGG | - | chr8.3:12724965-12724984 | None:intergenic | 20.0% |
| !! | ATTCATGTATAAATTCAAGT+GGG | - | chr8.3:12724631-12724650 | None:intergenic | 20.0% |
| !! | ATTTAACAACATTTCTAACT+AGG | - | chr8.3:12724229-12724248 | None:intergenic | 20.0% |
| !! | GTATTATAATTTCAATCTTG+AGG | + | chr8.3:12725316-12725335 | MS.gene59944:CDS | 20.0% |
| !! | TATAATTTAGCTGATCTTAT+GGG | + | chr8.3:12725678-12725697 | MS.gene59944:CDS | 20.0% |
| !! | TATTCATGTATAAATTCAAG+TGG | - | chr8.3:12724632-12724651 | None:intergenic | 20.0% |
| !! | TTATAATTTAGCTGATCTTA+TGG | + | chr8.3:12725677-12725696 | MS.gene59944:CDS | 20.0% |
| !!! | TATGCCTTTAAAATGAAATT+TGG | - | chr8.3:12725022-12725041 | None:intergenic | 20.0% |
| !!! | TCATATTATAATACCTTTTG+TGG | + | chr8.3:12725286-12725305 | MS.gene59944:intron | 20.0% |
| ! | AAGTATATACAAGCATTTGA+AGG | + | chr8.3:12724457-12724476 | MS.gene59944:intron | 25.0% |
| ! | AGAAATGTAAGAACAATCAT+TGG | - | chr8.3:12725834-12725853 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATCAACTATG+AGG | - | chr8.3:12724144-12724163 | None:intergenic | 25.0% |
| ! | ATAAAATACTCATTGTCGTA+TGG | - | chr8.3:12724431-12724450 | None:intergenic | 25.0% |
| ! | ATAATTTAGCTGATCTTATG+GGG | + | chr8.3:12725679-12725698 | MS.gene59944:CDS | 25.0% |
| ! | ATTATGAATATTCCAAAAGC+TGG | - | chr8.3:12725561-12725580 | None:intergenic | 25.0% |
| ! | GTAAAATTGATCAACTATGA+GGG | - | chr8.3:12724143-12724162 | None:intergenic | 25.0% |
| ! | TGAAGACAAACTATAAAAAG+TGG | - | chr8.3:12725783-12725802 | None:intergenic | 25.0% |
| !!! | CTTTTTATAGTTTGTCTTCA+TGG | + | chr8.3:12725783-12725802 | MS.gene59944:CDS | 25.0% |
| !!! | GCATTTGTCTTTTTTTCTAA+AGG | + | chr8.3:12724543-12724562 | MS.gene59944:intron | 25.0% |
| !!! | TGTCTTTTTTTCTAAAGGAT+GGG | + | chr8.3:12724548-12724567 | MS.gene59944:intron | 25.0% |
| !!! | TTGTCTTTTTTTCTAAAGGA+TGG | + | chr8.3:12724547-12724566 | MS.gene59944:intron | 25.0% |
| AAAAACTTTGCCTTAGATGA+AGG | + | chr8.3:12724380-12724399 | MS.gene59944:intron | 30.0% | |
| AACACTAGTAAGATATCCAT+TGG | - | chr8.3:12725868-12725887 | None:intergenic | 30.0% | |
| ATACAAGCATTTGAAGGTTA+AGG | + | chr8.3:12724463-12724482 | MS.gene59944:intron | 30.0% | |
| ATGTTCCACAATGTATCAAA+AGG | + | chr8.3:12725721-12725740 | MS.gene59944:CDS | 30.0% | |
| ATTGTTCTTACATTTCTGCT+TGG | + | chr8.3:12725837-12725856 | MS.gene59944:CDS | 30.0% | |
| CCTTATTCGAACAAATTCTA+AGG | + | chr8.3:12724351-12724370 | MS.gene59944:intron | 30.0% | |
| TACAAGCATTTGAAGGTTAA+GGG | + | chr8.3:12724464-12724483 | MS.gene59944:intron | 30.0% | |
| TACATAATCCATTTCTTGCT+TGG | + | chr8.3:12723673-12723692 | MS.gene59944:CDS | 30.0% | |
| TGTTCCACAATGTATCAAAA+GGG | + | chr8.3:12725722-12725741 | MS.gene59944:CDS | 30.0% | |
| TTTCATGTATCCTTCATCTA+AGG | - | chr8.3:12724393-12724412 | None:intergenic | 30.0% | |
| ! | ACTTCTGTTTTCAACCAATT+TGG | - | chr8.3:12725810-12725829 | None:intergenic | 30.0% |
| ! | ATAGAATAATAGTCTTGCTG+TGG | - | chr8.3:12725760-12725779 | None:intergenic | 30.0% |
| ! | CCTTAGAATTTGTTCGAATA+AGG | - | chr8.3:12724354-12724373 | None:intergenic | 30.0% |
| ! | CTATCTAAAACAATGTCCTT+AGG | + | chr8.3:12724179-12724198 | MS.gene59944:intron | 30.0% |
| ! | TTGTGTTGTAATTTTACCTG+AGG | - | chr8.3:12724106-12724125 | None:intergenic | 30.0% |
| ! | TTTGCTAGGTTATAGTTTGT+AGG | + | chr8.3:12724844-12724863 | MS.gene59944:intron | 30.0% |
| !! | AATGTTTGTTATGTCTCTCA+TGG | + | chr8.3:12723891-12723910 | MS.gene59944:CDS | 30.0% |
| !! | CATAGTTTTGCTAGATGTAT+AGG | - | chr8.3:12724765-12724784 | None:intergenic | 30.0% |
| !!! | CTTAAAGAATTTTGAAGCTG+TGG | + | chr8.3:12724795-12724814 | MS.gene59944:intron | 30.0% |
| !!! | GTCTTTTTTTCTAAAGGATG+GGG | + | chr8.3:12724549-12724568 | MS.gene59944:intron | 30.0% |
| !!! | TCTTTTTTTCTAAAGGATGG+GGG | + | chr8.3:12724550-12724569 | MS.gene59944:intron | 30.0% |
| AAACTTTGTCCCTGAACATA+AGG | - | chr8.3:12725511-12725530 | None:intergenic | 35.0% | |
| AACTTTGTCCCTGAACATAA+GGG | - | chr8.3:12725510-12725529 | None:intergenic | 35.0% | |
| ACCTTGGAATGCATTTATCA+CGG | + | chr8.3:12723711-12723730 | MS.gene59944:CDS | 35.0% | |
| AGATCTTCAGCAATAAATCC+TGG | - | chr8.3:12725609-12725628 | None:intergenic | 35.0% | |
| ATTGACAACACTGATACAAG+AGG | + | chr8.3:12724315-12724334 | MS.gene59944:intron | 35.0% | |
| CTAAAACAATGTCCTTAGGT+AGG | + | chr8.3:12724183-12724202 | MS.gene59944:intron | 35.0% | |
| GATCTGACCAAAATAAGTAG+AGG | - | chr8.3:12724889-12724908 | None:intergenic | 35.0% | |
| GATCTTCAGCAATAAATCCT+GGG | - | chr8.3:12725608-12725627 | None:intergenic | 35.0% | |
| GGAAAGTAGATTCTAGATCA+TGG | + | chr8.3:12724494-12724513 | MS.gene59944:intron | 35.0% | |
| GTAATATGTGGTTTAGCAGA+TGG | + | chr8.3:12724000-12724019 | MS.gene59944:CDS | 35.0% | |
| TAAAGACAATGCAACATAGG+AGG | - | chr8.3:12725425-12725444 | None:intergenic | 35.0% | |
| TAATACCTGTCAACCACAAA+AGG | - | chr8.3:12725302-12725321 | None:intergenic | 35.0% | |
| TAGGAGGGACTAAAATTTGA+TGG | + | chr8.3:12724863-12724882 | MS.gene59944:intron | 35.0% | |
| TATCTATCCGAACATACTAG+CGG | - | chr8.3:12725220-12725239 | None:intergenic | 35.0% | |
| TGCTAAAGACAATGCAACAT+AGG | - | chr8.3:12725428-12725447 | None:intergenic | 35.0% | |
| TTGAAGGTTAAGGGAGAAAA+AGG | + | chr8.3:12724473-12724492 | MS.gene59944:intron | 35.0% | |
| TTTCTGCTTGGATTTACCAA+TGG | + | chr8.3:12725849-12725868 | MS.gene59944:CDS | 35.0% | |
| TTTGTCTTCATGGACCAAAT+TGG | + | chr8.3:12725793-12725812 | MS.gene59944:CDS | 35.0% | |
| ! | AAAATTAAGGGACCAGCTTT+TGG | + | chr8.3:12725546-12725565 | MS.gene59944:CDS | 35.0% |
| ! | ACAGCTTGCATATACTGTTT+TGG | - | chr8.3:12724066-12724085 | None:intergenic | 35.0% |
| ! | ATCACTTGATGCTAGCTTAA+CGG | - | chr8.3:12723620-12723639 | None:intergenic | 35.0% |
| ! | CTAGGTTATAGTTTGTAGGA+GGG | + | chr8.3:12724848-12724867 | MS.gene59944:intron | 35.0% |
| ! | TAATACCTTTTGTGGTTGAC+AGG | + | chr8.3:12725294-12725313 | MS.gene59944:intron | 35.0% |
| !! | TTGATGGCCTCTACTTATTT+TGG | + | chr8.3:12724879-12724898 | MS.gene59944:intron | 35.0% |
| !!! | ACTTATTTTGAGACCCTTTG+GGG | - | chr8.3:12725370-12725389 | None:intergenic | 35.0% |
| !!! | CACTTATTTTGAGACCCTTT+GGG | - | chr8.3:12725371-12725390 | None:intergenic | 35.0% |
| !!! | TATATGCAAGCTGTTTTTGC+TGG | + | chr8.3:12724072-12724091 | MS.gene59944:CDS | 35.0% |
| AAAGACAAATGCCCCCATAA+TGG | - | chr8.3:12724535-12724554 | None:intergenic | 40.0% | |
| AAGTGCTCACTTGTACTTCA+TGG | + | chr8.3:12725386-12725405 | MS.gene59944:CDS | 40.0% | |
| AATCCAAGGCTCTTAAGGAT+TGG | + | chr8.3:12725631-12725650 | MS.gene59944:CDS | 40.0% | |
| ACCTTCTCAATGTGGTTAGT+TGG | - | chr8.3:12723763-12723782 | None:intergenic | 40.0% | |
| ACTTCTTGCGATGATGAGTT+GGG | + | chr8.3:12723819-12723838 | MS.gene59944:CDS | 40.0% | |
| AGATCCACAGCTACCATTAT+GGG | + | chr8.3:12724519-12724538 | MS.gene59944:intron | 40.0% | |
| ATACCAATCCTTAAGAGCCT+TGG | - | chr8.3:12725637-12725656 | None:intergenic | 40.0% | |
| CAATGTATCAAAAGGGCCAT+AGG | + | chr8.3:12725729-12725748 | MS.gene59944:CDS | 40.0% | |
| CATCTTTCCGCTAGTATGTT+CGG | + | chr8.3:12725210-12725229 | MS.gene59944:intron | 40.0% | |
| GCAACATAGGAGGAAAACTA+TGG | - | chr8.3:12725415-12725434 | None:intergenic | 40.0% | |
| GTAACTCTATCTATCTTCCC+AGG | + | chr8.3:12725588-12725607 | MS.gene59944:CDS | 40.0% | |
| GTATCATCAGAGTGTACTTC+AGG | + | chr8.3:12725479-12725498 | MS.gene59944:CDS | 40.0% | |
| GTTGCAGCTGTTGTAATATG+TGG | + | chr8.3:12723988-12724007 | MS.gene59944:CDS | 40.0% | |
| GTTGGAGTAAAACAACACTG+AGG | + | chr8.3:12723845-12723864 | MS.gene59944:CDS | 40.0% | |
| TACTTCTTGCGATGATGAGT+TGG | + | chr8.3:12723818-12723837 | MS.gene59944:CDS | 40.0% | |
| TCCAACTAACCACATTGAGA+AGG | + | chr8.3:12723759-12723778 | MS.gene59944:CDS | 40.0% | |
| TCTTGAATCCAAGGCTCTTA+AGG | + | chr8.3:12725626-12725645 | MS.gene59944:CDS | 40.0% | |
| TGATGATACTGCTGCATGAT+AGG | - | chr8.3:12725468-12725487 | None:intergenic | 40.0% | |
| TGCTGAAGATCTTGAATCCA+AGG | + | chr8.3:12725617-12725636 | MS.gene59944:CDS | 40.0% | |
| ! | ATGGCCCTTTTGATACATTG+TGG | - | chr8.3:12725729-12725748 | None:intergenic | 40.0% |
| ! | GCTAGGTTATAGTTTGTAGG+AGG | + | chr8.3:12724847-12724866 | MS.gene59944:intron | 40.0% |
| !! | ACTGCTTTTCTTGCTTTGCT+AGG | + | chr8.3:12724830-12724849 | MS.gene59944:intron | 40.0% |
| !! | TCTGAGAAATGCACTGACTT+AGG | - | chr8.3:12725906-12725925 | None:intergenic | 40.0% |
| !! | TTGGTTGGTGGAAGTTTGAT+AGG | + | chr8.3:12724024-12724043 | MS.gene59944:CDS | 40.0% |
| !!! | GCACTTATTTTGAGACCCTT+TGG | - | chr8.3:12725372-12725391 | None:intergenic | 40.0% |
| ACAGTATCCAGAACCAACCT+AGG | - | chr8.3:12725992-12726011 | None:intergenic | 45.0% | |
| AGGAGAGTCCCTTATGTTCA+GGG | + | chr8.3:12725499-12725518 | MS.gene59944:CDS | 45.0% | |
| ATCACTACCTCAAACCCCAA+AGG | + | chr8.3:12725353-12725372 | MS.gene59944:CDS | 45.0% | |
| ATCCACAGCTACCATTATGG+GGG | + | chr8.3:12724521-12724540 | MS.gene59944:intron | 45.0% | |
| ATCCATTTCTTGCTTGGAGC+AGG | + | chr8.3:12723679-12723698 | MS.gene59944:CDS | 45.0% | |
| ATGTGGTTTAGCAGATGGCT+TGG | + | chr8.3:12724005-12724024 | MS.gene59944:CDS | 45.0% | |
| CAGATCCACAGCTACCATTA+TGG | + | chr8.3:12724518-12724537 | MS.gene59944:intron | 45.0% | |
| CAGCGAAAACCTTCTCAATG+TGG | - | chr8.3:12723771-12723790 | None:intergenic | 45.0% | |
| CTGAGGTTGCGAATGAACTT+AGG | + | chr8.3:12723862-12723881 | MS.gene59944:CDS | 45.0% | |
| CTTCTTGCGATGATGAGTTG+GGG | + | chr8.3:12723820-12723839 | MS.gene59944:CDS | 45.0% | |
| GATCCACAGCTACCATTATG+GGG | + | chr8.3:12724520-12724539 | MS.gene59944:intron | 45.0% | |
| GCAGTGGCAGGGAAAATTAA+GGG | + | chr8.3:12725534-12725553 | MS.gene59944:CDS | 45.0% | |
| GCCGTGATAAATGCATTCCA+AGG | - | chr8.3:12723715-12723734 | None:intergenic | 45.0% | |
| GGAAGTTTGATAGGATCAGC+AGG | + | chr8.3:12724033-12724052 | MS.gene59944:CDS | 45.0% | |
| GTTTGATAGGATCAGCAGGA+AGG | + | chr8.3:12724037-12724056 | MS.gene59944:CDS | 45.0% | |
| TCACTACCTCAAACCCCAAA+GGG | + | chr8.3:12725354-12725373 | MS.gene59944:CDS | 45.0% | |
| TGCAGTGGCAGGGAAAATTA+AGG | + | chr8.3:12725533-12725552 | MS.gene59944:CDS | 45.0% | |
| TGCTCACTTGTACTTCATGG+TGG | + | chr8.3:12725389-12725408 | MS.gene59944:CDS | 45.0% | |
| TGGTAGCTCCTGTCATTGAT+TGG | + | chr8.3:12723911-12723930 | MS.gene59944:CDS | 45.0% | |
| TTCCTGCTCCAAGCAAGAAA+TGG | - | chr8.3:12723684-12723703 | None:intergenic | 45.0% | |
| ! | CATTGAGAAGGTTTTCGCTG+TGG | + | chr8.3:12723771-12723790 | MS.gene59944:CDS | 45.0% |
| ! | GGTAGCTCCTGTCATTGATT+GGG | + | chr8.3:12723912-12723931 | MS.gene59944:CDS | 45.0% |
| ! | GGTTTGAGGTAGTGATGCTT+TGG | - | chr8.3:12725349-12725368 | None:intergenic | 45.0% |
| ! | GGTTTTCGCTGTGGCTTATA+TGG | + | chr8.3:12723780-12723799 | MS.gene59944:CDS | 45.0% |
| ! | TAAGCGTCTCTTGTTTCGCT+CGG | - | chr8.3:12723643-12723662 | None:intergenic | 45.0% |
| !! | ACAAAGTTTTGTGCAGTGGC+AGG | + | chr8.3:12725522-12725541 | MS.gene59944:CDS | 45.0% |
| !! | AGGGACAAAGTTTTGTGCAG+TGG | + | chr8.3:12725518-12725537 | MS.gene59944:CDS | 45.0% |
| !! | CAAAGTTTTGTGCAGTGGCA+GGG | + | chr8.3:12725523-12725542 | MS.gene59944:CDS | 45.0% |
| ATTGTGATGACCGCGTTCCT+CGG | + | chr8.3:12725942-12725961 | MS.gene59944:CDS | 50.0% | |
| CAGGAGAGTCCCTTATGTTC+AGG | + | chr8.3:12725498-12725517 | MS.gene59944:CDS | 50.0% | |
| GAGATGAAAGAGAGGCCAAG+TGG | + | chr8.3:12723949-12723968 | MS.gene59944:CDS | 50.0% | |
| GTAGGGACGAGATGAAAGAG+AGG | + | chr8.3:12723941-12723960 | MS.gene59944:CDS | 50.0% | |
| GTCATGCCATAAGCACCACT+TGG | - | chr8.3:12723967-12723986 | None:intergenic | 50.0% | |
| TTTCATCTCGTCCCTACTCG+AGG | - | chr8.3:12723938-12723957 | None:intergenic | 50.0% | |
| TTTGCTGGAACTGCTTCCTC+AGG | + | chr8.3:12724087-12724106 | MS.gene59944:CDS | 50.0% | |
| ! | CATTGATTGGGCCTCGAGTA+GGG | + | chr8.3:12723924-12723943 | MS.gene59944:CDS | 50.0% |
| ! | TCATTGATTGGGCCTCGAGT+AGG | + | chr8.3:12723923-12723942 | MS.gene59944:CDS | 50.0% |
| ! | TTGGTGGTTCTGTCCTAGGT+TGG | + | chr8.3:12725976-12725995 | MS.gene59944:CDS | 50.0% |
| !! | GAGCAGGAAACTTGCTACCT+TGG | + | chr8.3:12723695-12723714 | MS.gene59944:CDS | 50.0% |
| !! | GGTTTAGCAGATGGCTTGGT+TGG | + | chr8.3:12724009-12724028 | MS.gene59944:CDS | 50.0% |
| !! | GTTCTGTCCTAGGTTGGTTC+TGG | + | chr8.3:12725982-12726001 | MS.gene59944:CDS | 50.0% |
| !! | TTAGCAGATGGCTTGGTTGG+TGG | + | chr8.3:12724012-12724031 | MS.gene59944:CDS | 50.0% |
| !! | TTGAGACCCTTTGGGGTTTG+AGG | - | chr8.3:12725363-12725382 | None:intergenic | 50.0% |
| !! | TTGGTTGGTGGTTCTGTCCT+AGG | + | chr8.3:12725972-12725991 | MS.gene59944:CDS | 50.0% |
| ATGACCGCGTTCCTCGGATT+CGG | + | chr8.3:12725948-12725967 | MS.gene59944:CDS | 55.0% | |
| CGCGCTATAGCTCCTACCTA+AGG | - | chr8.3:12724198-12724217 | None:intergenic | 55.0% | |
| CTCGAGGCCCAATCAATGAC+AGG | - | chr8.3:12723922-12723941 | None:intergenic | 55.0% | |
| GAGAGGCCAAGTGGTGCTTA+TGG | + | chr8.3:12723958-12723977 | MS.gene59944:CDS | 55.0% | |
| TGCCCCCATAATGGTAGCTG+TGG | - | chr8.3:12724526-12724545 | None:intergenic | 55.0% | |
| ! | CGATGATGAGTTGGGGAGGT+TGG | + | chr8.3:12723827-12723846 | MS.gene59944:CDS | 55.0% |
| ! | CTTGCGATGATGAGTTGGGG+AGG | + | chr8.3:12723823-12723842 | MS.gene59944:CDS | 55.0% |
| ! | TCTTGCTGTGGCAGCACCTA+TGG | - | chr8.3:12725748-12725767 | None:intergenic | 55.0% |
| !! | TTCCTCGGATTCGGCTTGGT+TGG | + | chr8.3:12725957-12725976 | MS.gene59944:CDS | 55.0% |
| CAAGCCGAATCCGAGGAACG+CGG | - | chr8.3:12725955-12725974 | None:intergenic | 60.0% | |
| CACCAACCAAGCCGAATCCG+AGG | - | chr8.3:12725962-12725981 | None:intergenic | 60.0% | |
| !! | CTCGGATTCGGCTTGGTTGG+TGG | + | chr8.3:12725960-12725979 | MS.gene59944:CDS | 60.0% |
| CGCGTTCCTCGGATTCGGCT+TGG | + | chr8.3:12725953-12725972 | MS.gene59944:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 12723610 | 12726013 | 12723610 | ID=MS.gene59944 |
| chr8.3 | mRNA | 12723610 | 12726013 | 12723610 | ID=MS.gene59944.t1;Parent=MS.gene59944 |
| chr8.3 | exon | 12723610 | 12724108 | 12723610 | ID=MS.gene59944.t1.exon1;Parent=MS.gene59944.t1 |
| chr8.3 | CDS | 12723610 | 12724108 | 12723610 | ID=cds.MS.gene59944.t1;Parent=MS.gene59944.t1 |
| chr8.3 | exon | 12725316 | 12726013 | 12725316 | ID=MS.gene59944.t1.exon2;Parent=MS.gene59944.t1 |
| chr8.3 | CDS | 12725316 | 12726013 | 12725316 | ID=cds.MS.gene59944.t1;Parent=MS.gene59944.t1 |
| Gene Sequence |
| Protein sequence |
