Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62397.t1 | XP_003609351.1 | 99 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62397.t1 | Q84XI3 | 63.5 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 2.4e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62397.t1 | G7JE40 | 99.0 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34608 | MS.gene62397 | PPI |
| MS.gene62397 | MS.gene024513 | PPI |
| MS.gene62397 | MS.gene05630 | PPI |
| MS.gene08114 | MS.gene62397 | PPI |
| MS.gene62397 | MS.gene22871 | PPI |
| MS.gene050575 | MS.gene62397 | PPI |
| MS.gene025499 | MS.gene62397 | PPI |
| MS.gene62397 | MS.gene025979 | PPI |
| MS.gene35851 | MS.gene62397 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62397.t1 | MTR_4g114710 | 98.995 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 0.0 | 803 |
| MS.gene62397.t1 | MTR_0003s0470 | 49.239 | 394 | 186 | 4 | 15 | 398 | 26 | 415 | 3.02e-127 | 373 |
| MS.gene62397.t1 | MTR_3g462280 | 45.700 | 407 | 202 | 7 | 7 | 398 | 21 | 423 | 6.63e-114 | 339 |
| MS.gene62397.t1 | MTR_0008s0170 | 27.660 | 423 | 263 | 7 | 6 | 398 | 1 | 410 | 7.95e-49 | 171 |
| MS.gene62397.t1 | MTR_0008s0130 | 28.372 | 430 | 251 | 10 | 6 | 398 | 1 | 410 | 4.86e-47 | 166 |
| MS.gene62397.t1 | MTR_4g050990 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene62397.t1 | MTR_2g089520 | 29.882 | 425 | 251 | 12 | 6 | 398 | 1 | 410 | 4.61e-46 | 163 |
| MS.gene62397.t1 | MTR_2g011600 | 28.671 | 429 | 250 | 12 | 7 | 398 | 10 | 419 | 1.58e-45 | 162 |
| MS.gene62397.t1 | MTR_2g047968 | 29.604 | 429 | 242 | 13 | 8 | 398 | 4 | 410 | 1.96e-41 | 152 |
| MS.gene62397.t1 | MTR_2g011580 | 27.763 | 389 | 239 | 9 | 40 | 398 | 2 | 378 | 8.40e-40 | 146 |
| MS.gene62397.t1 | MTR_2g011600 | 29.132 | 357 | 196 | 10 | 81 | 398 | 30 | 368 | 2.08e-35 | 134 |
| MS.gene62397.t1 | MTR_1g071120 | 27.616 | 344 | 199 | 9 | 13 | 324 | 50 | 375 | 1.09e-32 | 127 |
| MS.gene62397.t1 | MTR_8g007285 | 26.075 | 372 | 230 | 10 | 57 | 396 | 2 | 360 | 3.05e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62397.t1 | AT1G02630 | 63.520 | 392 | 129 | 5 | 10 | 398 | 9 | 389 | 1.52e-178 | 502 |
| MS.gene62397.t1 | AT1G02630 | 55.867 | 392 | 115 | 6 | 10 | 398 | 9 | 345 | 9.44e-146 | 417 |
| MS.gene62397.t1 | AT1G70330 | 49.114 | 395 | 186 | 4 | 16 | 398 | 59 | 450 | 3.93e-123 | 364 |
| MS.gene62397.t1 | AT3G09990 | 28.193 | 415 | 242 | 12 | 21 | 398 | 18 | 413 | 7.89e-44 | 157 |
| MS.gene62397.t1 | AT1G61630 | 27.378 | 431 | 249 | 9 | 9 | 398 | 5 | 412 | 5.81e-43 | 155 |
| MS.gene62397.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene62397.t1 | AT4G05120 | 28.271 | 428 | 258 | 11 | 3 | 398 | 2 | 412 | 1.83e-42 | 154 |
| MS.gene62397.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene62397.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 1.32e-41 | 152 |
| MS.gene62397.t1 | AT4G05110 | 28.162 | 419 | 254 | 11 | 11 | 398 | 10 | 412 | 2.72e-41 | 151 |
| MS.gene62397.t1 | AT4G05130 | 27.791 | 421 | 253 | 12 | 11 | 398 | 10 | 412 | 1.72e-40 | 149 |
| MS.gene62397.t1 | AT4G05140 | 26.744 | 430 | 259 | 12 | 5 | 398 | 4 | 413 | 5.83e-38 | 142 |
Find 92 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGGGACCAGCTTT+TGG | 0.257914 | 8.2:+13952791 | MS.gene62397:CDS |
| TTATAATTTAGCTGATCTTA+TGG | 0.261483 | 8.2:+13952922 | MS.gene62397:CDS |
| TGCAGTGGCAGGGAAAATTA+AGG | 0.277433 | 8.2:+13952778 | MS.gene62397:CDS |
| GTTCTGTCCTAGGTTGGTTC+TGG | 0.300139 | 8.2:+13953227 | MS.gene62397:CDS |
| TCTTGAATCCAAGGCTCTTA+AGG | 0.316097 | 8.2:+13952871 | MS.gene62397:CDS |
| TAAACTGTAATCAATATAAT+AGG | 0.319839 | 8.2:-13952902 | None:intergenic |
| ACAGCTTGCATATACTGTTT+TGG | 0.330078 | 8.2:-13951313 | None:intergenic |
| TATAATTTAGCTGATCTTAT+GGG | 0.341304 | 8.2:+13952923 | MS.gene62397:CDS |
| TACATAATCCATTTCTTGCT+TGG | 0.351729 | 8.2:+13950923 | MS.gene62397:CDS |
| CAGGAGAGTCCCTTATGTTC+AGG | 0.355351 | 8.2:+13952743 | MS.gene62397:CDS |
| GTATCATCAGAGTGTACTTC+AGG | 0.361010 | 8.2:+13952724 | MS.gene62397:CDS |
| TGGTAGCTCCTGTCATTGAT+TGG | 0.376095 | 8.2:+13951161 | MS.gene62397:CDS |
| GAGAGGCCAAGTGGTGCTTA+TGG | 0.382783 | 8.2:+13951208 | MS.gene62397:CDS |
| TTGGTTGGTGGTTCTGTCCT+AGG | 0.383076 | 8.2:+13953217 | MS.gene62397:CDS |
| AAACTTTGTCCCTGAACATA+AGG | 0.390189 | 8.2:-13952753 | None:intergenic |
| TGATGATACTGCTGCATGAT+AGG | 0.394711 | 8.2:-13952710 | None:intergenic |
| CGCGTTCCTCGGATTCGGCT+TGG | 0.397450 | 8.2:+13953198 | MS.gene62397:CDS |
| TTTGTCTTCATGGACCAAAT+TGG | 0.398789 | 8.2:+13953038 | MS.gene62397:CDS |
| ACCTTCTCAATGTGGTTAGT+TGG | 0.405196 | 8.2:-13951010 | None:intergenic |
| TTCCTGCTCCAAGCAAGAAA+TGG | 0.405518 | 8.2:-13950931 | None:intergenic |
| CTCGGATTCGGCTTGGTTGG+TGG | 0.408001 | 8.2:+13953205 | MS.gene62397:CDS |
| TTGAGACCCTTTGGGGTTTG+AGG | 0.410939 | 8.2:-13952605 | None:intergenic |
| TCTTGCTGTGGCAGCACCTA+TGG | 0.413596 | 8.2:-13952990 | None:intergenic |
| AAGTGCTCACTTGTACTTCA+TGG | 0.413740 | 8.2:+13952631 | MS.gene62397:CDS |
| ATCCATTTCTTGCTTGGAGC+AGG | 0.419667 | 8.2:+13950929 | MS.gene62397:CDS |
| ATGACCGCGTTCCTCGGATT+CGG | 0.421562 | 8.2:+13953193 | MS.gene62397:CDS |
| ATGTTCCACAATGTATCAAA+AGG | 0.427242 | 8.2:+13952966 | MS.gene62397:CDS |
| TTGGTTGGTGGAAGTTTGAT+AGG | 0.433123 | 8.2:+13951274 | MS.gene62397:CDS |
| ACTTCTTGCGATGATGAGTT+GGG | 0.436575 | 8.2:+13951069 | MS.gene62397:CDS |
| TTTGCTGGAACTGCTTCCTC+AGG | 0.440158 | 8.2:+13951337 | MS.gene62397:CDS |
| ATACCAATCCTTAAGAGCCT+TGG | 0.444568 | 8.2:-13952879 | None:intergenic |
| GAGCAGGAAACTTGCTACCT+TGG | 0.445287 | 8.2:+13950945 | MS.gene62397:CDS |
| TACTTCTTGCGATGATGAGT+TGG | 0.445586 | 8.2:+13951068 | MS.gene62397:CDS |
| AGATCTTCAGCAATAAATCC+TGG | 0.450755 | 8.2:-13952851 | None:intergenic |
| GGTAGCTCCTGTCATTGATT+GGG | 0.452656 | 8.2:+13951162 | MS.gene62397:CDS |
| GCAACATAGGAGGAAAACTA+TGG | 0.455079 | 8.2:-13952657 | None:intergenic |
| ATTGTTCTTACATTTCTGCT+TGG | 0.455315 | 8.2:+13953082 | MS.gene62397:CDS |
| ATTGTGATGACCGCGTTCCT+CGG | 0.461564 | 8.2:+13953187 | MS.gene62397:CDS |
| AATGTTTGTTATGTCTCTCA+TGG | 0.465994 | 8.2:+13951141 | MS.gene62397:CDS |
| CTGAGGTTGCGAATGAACTT+AGG | 0.472940 | 8.2:+13951112 | MS.gene62397:CDS |
| GGTTTGAGGTAGTGATGCTT+TGG | 0.473253 | 8.2:-13952591 | None:intergenic |
| AGGAGAGTCCCTTATGTTCA+GGG | 0.476690 | 8.2:+13952744 | MS.gene62397:CDS |
| CGATGATGAGTTGGGGAGGT+TGG | 0.479957 | 8.2:+13951077 | MS.gene62397:CDS |
| CATTGATTGGGCCTCGAGTA+GGG | 0.484656 | 8.2:+13951174 | MS.gene62397:CDS |
| TCTGAGAAATGCACTGACTT+AGG | 0.485958 | 8.2:-13953148 | None:intergenic |
| AGAAATGTAAGAACAATCAT+TGG | 0.487588 | 8.2:-13953076 | None:intergenic |
| TCATTGATTGGGCCTCGAGT+AGG | 0.493347 | 8.2:+13951173 | MS.gene62397:CDS |
| TAAGCGTCTCTTGTTTCGCT+CGG | 0.504224 | 8.2:-13950890 | None:intergenic |
| TTCCTCGGATTCGGCTTGGT+TGG | 0.504238 | 8.2:+13953202 | MS.gene62397:CDS |
| TGCTGAAGATCTTGAATCCA+AGG | 0.504556 | 8.2:+13952862 | MS.gene62397:CDS |
| AATCCAAGGCTCTTAAGGAT+TGG | 0.505326 | 8.2:+13952876 | MS.gene62397:CDS |
| ATTATGAATATTCCAAAAGC+TGG | 0.509136 | 8.2:-13952803 | None:intergenic |
| GTTGCAGCTGTTGTAATATG+TGG | 0.509743 | 8.2:+13951238 | MS.gene62397:CDS |
| GGTTTAGCAGATGGCTTGGT+TGG | 0.510374 | 8.2:+13951259 | MS.gene62397:CDS |
| GCAGTGGCAGGGAAAATTAA+GGG | 0.512760 | 8.2:+13952779 | MS.gene62397:CDS |
| AACTTTGTCCCTGAACATAA+GGG | 0.516896 | 8.2:-13952752 | None:intergenic |
| GTATTATAATTTCAATCTTG+AGG | 0.517953 | 8.2:+13952561 | MS.gene62397:CDS |
| GTTGGTTCTGGATACTGTGA+AGG | 0.522252 | 8.2:+13953239 | MS.gene62397:CDS |
| TTGGTGGTTCTGTCCTAGGT+TGG | 0.528954 | 8.2:+13953221 | MS.gene62397:CDS |
| TTAGCAGATGGCTTGGTTGG+TGG | 0.535563 | 8.2:+13951262 | MS.gene62397:CDS |
| AACACTAGTAAGATATCCAT+TGG | 0.535884 | 8.2:-13953110 | None:intergenic |
| TCACTACCTCAAACCCCAAA+GGG | 0.535947 | 8.2:+13952599 | MS.gene62397:CDS |
| TTTCTGCTTGGATTTACCAA+TGG | 0.538009 | 8.2:+13953094 | MS.gene62397:CDS |
| GGAAGTTTGATAGGATCAGC+AGG | 0.544382 | 8.2:+13951283 | MS.gene62397:CDS |
| CAATGTATCAAAAGGGCCAT+AGG | 0.548021 | 8.2:+13952974 | MS.gene62397:CDS |
| CTCGAGGCCCAATCAATGAC+AGG | 0.549987 | 8.2:-13951169 | None:intergenic |
| ATAATTTAGCTGATCTTATG+GGG | 0.556528 | 8.2:+13952924 | MS.gene62397:CDS |
| TGTTCCACAATGTATCAAAA+GGG | 0.559037 | 8.2:+13952967 | MS.gene62397:CDS |
| GTAATATGTGGTTTAGCAGA+TGG | 0.566070 | 8.2:+13951250 | MS.gene62397:CDS |
| TGCTAAAGACAATGCAACAT+AGG | 0.569551 | 8.2:-13952670 | None:intergenic |
| GATCTTCAGCAATAAATCCT+GGG | 0.574505 | 8.2:-13952850 | None:intergenic |
| ATGTGGTTTAGCAGATGGCT+TGG | 0.575031 | 8.2:+13951255 | MS.gene62397:CDS |
| GTAACTCTATCTATCTTCCC+AGG | 0.575256 | 8.2:+13952833 | MS.gene62397:CDS |
| ACCTTGGAATGCATTTATCA+CGG | 0.589722 | 8.2:+13950961 | MS.gene62397:CDS |
| TAAAGACAATGCAACATAGG+AGG | 0.600160 | 8.2:-13952667 | None:intergenic |
| CACCAACCAAGCCGAATCCG+AGG | 0.600577 | 8.2:-13953204 | None:intergenic |
| TCCAACTAACCACATTGAGA+AGG | 0.605730 | 8.2:+13951009 | MS.gene62397:CDS |
| ATCACTACCTCAAACCCCAA+AGG | 0.611165 | 8.2:+13952598 | MS.gene62397:CDS |
| GTCATGCCATAAGCACCACT+TGG | 0.614144 | 8.2:-13951214 | None:intergenic |
| ACAGTATCCAGAACCAACCT+AGG | 0.614984 | 8.2:-13953234 | None:intergenic |
| CTTGCGATGATGAGTTGGGG+AGG | 0.619198 | 8.2:+13951073 | MS.gene62397:CDS |
| TTTCATCTCGTCCCTACTCG+AGG | 0.623295 | 8.2:-13951185 | None:intergenic |
| GTTTGATAGGATCAGCAGGA+AGG | 0.624638 | 8.2:+13951287 | MS.gene62397:CDS |
| GCCGTGATAAATGCATTCCA+AGG | 0.626474 | 8.2:-13950962 | None:intergenic |
| GTAGGGACGAGATGAAAGAG+AGG | 0.629913 | 8.2:+13951191 | MS.gene62397:CDS |
| ATAGAATAATAGTCTTGCTG+TGG | 0.649512 | 8.2:-13953002 | None:intergenic |
| CTTCTTGCGATGATGAGTTG+GGG | 0.656503 | 8.2:+13951070 | MS.gene62397:CDS |
| CAGCGAAAACCTTCTCAATG+TGG | 0.674870 | 8.2:-13951018 | None:intergenic |
| TGCTCACTTGTACTTCATGG+TGG | 0.701698 | 8.2:+13952634 | MS.gene62397:CDS |
| CAAGCCGAATCCGAGGAACG+CGG | 0.703497 | 8.2:-13953197 | None:intergenic |
| GAGATGAAAGAGAGGCCAAG+TGG | 0.710667 | 8.2:+13951199 | MS.gene62397:CDS |
| GTTGGAGTAAAACAACACTG+AGG | 0.825176 | 8.2:+13951095 | MS.gene62397:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACATATATATTAAAATT+GGG | + | chr8.2:13952287-13952306 | MS.gene62397:intron | 10.0% |
| !! | TACAACATATATATTAAAAT+TGG | + | chr8.2:13952286-13952305 | MS.gene62397:intron | 10.0% |
| !! | ATCAAGACAATTAAATTAAA+AGG | + | chr8.2:13952350-13952369 | MS.gene62397:intron | 15.0% |
| !! | TAAACTGTAATCAATATAAT+AGG | - | chr8.2:13952905-13952924 | None:intergenic | 15.0% |
| !! | TAAATCTATACCATAATTTA+TGG | + | chr8.2:13952198-13952217 | MS.gene62397:intron | 15.0% |
| !!! | TAAATTTTTTGTTACAATGA+CGG | - | chr8.2:13951929-13951948 | None:intergenic | 15.0% |
| !!! | TTTTAGATAGTAATGTAAAA+AGG | - | chr8.2:13951419-13951438 | None:intergenic | 15.0% |
| !!! | TTTTCCAAATTTCATTTTAA+AGG | + | chr8.2:13952261-13952280 | MS.gene62397:intron | 15.0% |
| !! | AAATTAGTTGCCATAAATTA+TGG | - | chr8.2:13952211-13952230 | None:intergenic | 20.0% |
| !! | ATTCATGTATAAATTCAAGT+GGG | - | chr8.2:13951877-13951896 | None:intergenic | 20.0% |
| !! | ATTTAACAACATTTCTAACT+AGG | - | chr8.2:13951479-13951498 | None:intergenic | 20.0% |
| !! | GTATTATAATTTCAATCTTG+AGG | + | chr8.2:13952561-13952580 | MS.gene62397:CDS | 20.0% |
| !! | TATAATTTAGCTGATCTTAT+GGG | + | chr8.2:13952923-13952942 | MS.gene62397:CDS | 20.0% |
| !! | TATTCATGTATAAATTCAAG+TGG | - | chr8.2:13951878-13951897 | None:intergenic | 20.0% |
| !! | TTATAATTTAGCTGATCTTA+TGG | + | chr8.2:13952922-13952941 | MS.gene62397:CDS | 20.0% |
| !!! | TATGCCTTTAAAATGAAATT+TGG | - | chr8.2:13952268-13952287 | None:intergenic | 20.0% |
| !!! | TCATATTATAATACCTTTTG+TGG | + | chr8.2:13952531-13952550 | MS.gene62397:intron | 20.0% |
| ! | AAGTATATACAAGCATTTGA+AGG | + | chr8.2:13951703-13951722 | MS.gene62397:intron | 25.0% |
| ! | AGAAATGTAAGAACAATCAT+TGG | - | chr8.2:13953079-13953098 | None:intergenic | 25.0% |
| ! | AGTAAAATTGATCAACTATG+AGG | - | chr8.2:13951394-13951413 | None:intergenic | 25.0% |
| ! | ATAAAATACTCATTGTCGTA+TGG | - | chr8.2:13951677-13951696 | None:intergenic | 25.0% |
| ! | ATAATTTAGCTGATCTTATG+GGG | + | chr8.2:13952924-13952943 | MS.gene62397:CDS | 25.0% |
| ! | ATTATGAATATTCCAAAAGC+TGG | - | chr8.2:13952806-13952825 | None:intergenic | 25.0% |
| ! | GTAAAATTGATCAACTATGA+GGG | - | chr8.2:13951393-13951412 | None:intergenic | 25.0% |
| ! | TGAAGACAAACTATAAAAAG+TGG | - | chr8.2:13953028-13953047 | None:intergenic | 25.0% |
| !!! | CTTTTTATAGTTTGTCTTCA+TGG | + | chr8.2:13953028-13953047 | MS.gene62397:CDS | 25.0% |
| !!! | GCATTTGTCTTTTTTTCTAA+AGG | + | chr8.2:13951789-13951808 | MS.gene62397:intron | 25.0% |
| !!! | TGTCTTTTTTTCTAAAGGAT+GGG | + | chr8.2:13951794-13951813 | MS.gene62397:intron | 25.0% |
| !!! | TTGTCTTTTTTTCTAAAGGA+TGG | + | chr8.2:13951793-13951812 | MS.gene62397:intron | 25.0% |
| AAAAACTTTGCCTTAGATGA+AGG | + | chr8.2:13951626-13951645 | MS.gene62397:intron | 30.0% | |
| AACACTAGTAAGATATCCAT+TGG | - | chr8.2:13953113-13953132 | None:intergenic | 30.0% | |
| ATACAAGCATTTGAAGGTTA+AGG | + | chr8.2:13951709-13951728 | MS.gene62397:intron | 30.0% | |
| ATGTTCCACAATGTATCAAA+AGG | + | chr8.2:13952966-13952985 | MS.gene62397:CDS | 30.0% | |
| ATTGTTCTTACATTTCTGCT+TGG | + | chr8.2:13953082-13953101 | MS.gene62397:CDS | 30.0% | |
| CCTTATTCGAACAAATTCTA+AGG | + | chr8.2:13951597-13951616 | MS.gene62397:intron | 30.0% | |
| TACAAGCATTTGAAGGTTAA+GGG | + | chr8.2:13951710-13951729 | MS.gene62397:intron | 30.0% | |
| TACATAATCCATTTCTTGCT+TGG | + | chr8.2:13950923-13950942 | MS.gene62397:CDS | 30.0% | |
| TGTTCCACAATGTATCAAAA+GGG | + | chr8.2:13952967-13952986 | MS.gene62397:CDS | 30.0% | |
| TTTCATGTATCCTTCATCTA+AGG | - | chr8.2:13951639-13951658 | None:intergenic | 30.0% | |
| ! | ACTTCTGTTTTCAACCAATT+TGG | - | chr8.2:13953055-13953074 | None:intergenic | 30.0% |
| ! | ATAGAATAATAGTCTTGCTG+TGG | - | chr8.2:13953005-13953024 | None:intergenic | 30.0% |
| ! | CCTTAGAATTTGTTCGAATA+AGG | - | chr8.2:13951600-13951619 | None:intergenic | 30.0% |
| ! | CTATCTAAAACAATGTCCTT+AGG | + | chr8.2:13951429-13951448 | MS.gene62397:intron | 30.0% |
| ! | TTGTGTTGTAATTTTACCTG+AGG | - | chr8.2:13951356-13951375 | None:intergenic | 30.0% |
| ! | TTTGCTAGGTTATAGTTTGT+AGG | + | chr8.2:13952090-13952109 | MS.gene62397:intron | 30.0% |
| !! | AATGTTTGTTATGTCTCTCA+TGG | + | chr8.2:13951141-13951160 | MS.gene62397:CDS | 30.0% |
| !! | CATAGTTTTGCTAGATGTAT+AGG | - | chr8.2:13952011-13952030 | None:intergenic | 30.0% |
| !!! | CTTAAAGAATTTTGAAGCTG+TGG | + | chr8.2:13952041-13952060 | MS.gene62397:intron | 30.0% |
| !!! | GTCTTTTTTTCTAAAGGATG+GGG | + | chr8.2:13951795-13951814 | MS.gene62397:intron | 30.0% |
| !!! | TCTTTTTTTCTAAAGGATGG+GGG | + | chr8.2:13951796-13951815 | MS.gene62397:intron | 30.0% |
| AAACTTTGTCCCTGAACATA+AGG | - | chr8.2:13952756-13952775 | None:intergenic | 35.0% | |
| AACTTTGTCCCTGAACATAA+GGG | - | chr8.2:13952755-13952774 | None:intergenic | 35.0% | |
| ACCTTGGAATGCATTTATCA+CGG | + | chr8.2:13950961-13950980 | MS.gene62397:CDS | 35.0% | |
| AGATCTTCAGCAATAAATCC+TGG | - | chr8.2:13952854-13952873 | None:intergenic | 35.0% | |
| ATTGACAACACTGATACAAG+AGG | + | chr8.2:13951561-13951580 | MS.gene62397:intron | 35.0% | |
| CTAAAACAATGTCCTTAGGT+AGG | + | chr8.2:13951433-13951452 | MS.gene62397:intron | 35.0% | |
| GATCTGACCAAAATAAGTAG+AGG | - | chr8.2:13952135-13952154 | None:intergenic | 35.0% | |
| GATCTTCAGCAATAAATCCT+GGG | - | chr8.2:13952853-13952872 | None:intergenic | 35.0% | |
| GGAAAGTAGATTCTAGATCA+TGG | + | chr8.2:13951740-13951759 | MS.gene62397:intron | 35.0% | |
| GTAATATGTGGTTTAGCAGA+TGG | + | chr8.2:13951250-13951269 | MS.gene62397:CDS | 35.0% | |
| TAAAGACAATGCAACATAGG+AGG | - | chr8.2:13952670-13952689 | None:intergenic | 35.0% | |
| TAATACCTGTCAACCACAAA+AGG | - | chr8.2:13952547-13952566 | None:intergenic | 35.0% | |
| TAGGAGGGACTAAAATTTGA+TGG | + | chr8.2:13952109-13952128 | MS.gene62397:intron | 35.0% | |
| TATCTATCCGAACATACTAG+CGG | - | chr8.2:13952465-13952484 | None:intergenic | 35.0% | |
| TGCTAAAGACAATGCAACAT+AGG | - | chr8.2:13952673-13952692 | None:intergenic | 35.0% | |
| TTGAAGGTTAAGGGAGAAAA+AGG | + | chr8.2:13951719-13951738 | MS.gene62397:intron | 35.0% | |
| TTTCTAACTAGGCGCTATAT+CGG | - | chr8.2:13951468-13951487 | None:intergenic | 35.0% | |
| TTTCTGCTTGGATTTACCAA+TGG | + | chr8.2:13953094-13953113 | MS.gene62397:CDS | 35.0% | |
| TTTGTCTTCATGGACCAAAT+TGG | + | chr8.2:13953038-13953057 | MS.gene62397:CDS | 35.0% | |
| ! | AAAATTAAGGGACCAGCTTT+TGG | + | chr8.2:13952791-13952810 | MS.gene62397:CDS | 35.0% |
| ! | ACAGCTTGCATATACTGTTT+TGG | - | chr8.2:13951316-13951335 | None:intergenic | 35.0% |
| ! | CTAGGTTATAGTTTGTAGGA+GGG | + | chr8.2:13952094-13952113 | MS.gene62397:intron | 35.0% |
| ! | TAATACCTTTTGTGGTTGAC+AGG | + | chr8.2:13952539-13952558 | MS.gene62397:intron | 35.0% |
| !! | TTGATGGCCTCTACTTATTT+TGG | + | chr8.2:13952125-13952144 | MS.gene62397:intron | 35.0% |
| !!! | ACTTATTTTGAGACCCTTTG+GGG | - | chr8.2:13952615-13952634 | None:intergenic | 35.0% |
| !!! | CACTTATTTTGAGACCCTTT+GGG | - | chr8.2:13952616-13952635 | None:intergenic | 35.0% |
| !!! | TATATGCAAGCTGTTTTTGC+TGG | + | chr8.2:13951322-13951341 | MS.gene62397:CDS | 35.0% |
| AAAGACAAATGCCCCCATAA+TGG | - | chr8.2:13951781-13951800 | None:intergenic | 40.0% | |
| AAGTGCTCACTTGTACTTCA+TGG | + | chr8.2:13952631-13952650 | MS.gene62397:CDS | 40.0% | |
| AATCCAAGGCTCTTAAGGAT+TGG | + | chr8.2:13952876-13952895 | MS.gene62397:CDS | 40.0% | |
| ACCTTCTCAATGTGGTTAGT+TGG | - | chr8.2:13951013-13951032 | None:intergenic | 40.0% | |
| ACTTCTTGCGATGATGAGTT+GGG | + | chr8.2:13951069-13951088 | MS.gene62397:CDS | 40.0% | |
| AGATCCACAGCTACCATTAT+GGG | + | chr8.2:13951765-13951784 | MS.gene62397:intron | 40.0% | |
| ATACCAATCCTTAAGAGCCT+TGG | - | chr8.2:13952882-13952901 | None:intergenic | 40.0% | |
| CAATGTATCAAAAGGGCCAT+AGG | + | chr8.2:13952974-13952993 | MS.gene62397:CDS | 40.0% | |
| CATCTTTCCGCTAGTATGTT+CGG | + | chr8.2:13952455-13952474 | MS.gene62397:intron | 40.0% | |
| GCAACATAGGAGGAAAACTA+TGG | - | chr8.2:13952660-13952679 | None:intergenic | 40.0% | |
| GTAACTCTATCTATCTTCCC+AGG | + | chr8.2:13952833-13952852 | MS.gene62397:CDS | 40.0% | |
| GTATCATCAGAGTGTACTTC+AGG | + | chr8.2:13952724-13952743 | MS.gene62397:CDS | 40.0% | |
| GTTGCAGCTGTTGTAATATG+TGG | + | chr8.2:13951238-13951257 | MS.gene62397:CDS | 40.0% | |
| GTTGGAGTAAAACAACACTG+AGG | + | chr8.2:13951095-13951114 | MS.gene62397:CDS | 40.0% | |
| TACTTCTTGCGATGATGAGT+TGG | + | chr8.2:13951068-13951087 | MS.gene62397:CDS | 40.0% | |
| TCCAACTAACCACATTGAGA+AGG | + | chr8.2:13951009-13951028 | MS.gene62397:CDS | 40.0% | |
| TCTTGAATCCAAGGCTCTTA+AGG | + | chr8.2:13952871-13952890 | MS.gene62397:CDS | 40.0% | |
| TGATGATACTGCTGCATGAT+AGG | - | chr8.2:13952713-13952732 | None:intergenic | 40.0% | |
| TGCTGAAGATCTTGAATCCA+AGG | + | chr8.2:13952862-13952881 | MS.gene62397:CDS | 40.0% | |
| TTCTAACTAGGCGCTATATC+GGG | - | chr8.2:13951467-13951486 | None:intergenic | 40.0% | |
| ! | ATGGCCCTTTTGATACATTG+TGG | - | chr8.2:13952974-13952993 | None:intergenic | 40.0% |
| ! | GCTAGGTTATAGTTTGTAGG+AGG | + | chr8.2:13952093-13952112 | MS.gene62397:intron | 40.0% |
| !! | ACTGCTTTTCTTGCTTTGCT+AGG | + | chr8.2:13952076-13952095 | MS.gene62397:intron | 40.0% |
| !! | TCTGAGAAATGCACTGACTT+AGG | - | chr8.2:13953151-13953170 | None:intergenic | 40.0% |
| !! | TTGGTTGGTGGAAGTTTGAT+AGG | + | chr8.2:13951274-13951293 | MS.gene62397:CDS | 40.0% |
| !!! | GCACTTATTTTGAGACCCTT+TGG | - | chr8.2:13952617-13952636 | None:intergenic | 40.0% |
| ACAGTATCCAGAACCAACCT+AGG | - | chr8.2:13953237-13953256 | None:intergenic | 45.0% | |
| AGGAGAGTCCCTTATGTTCA+GGG | + | chr8.2:13952744-13952763 | MS.gene62397:CDS | 45.0% | |
| ATCACTACCTCAAACCCCAA+AGG | + | chr8.2:13952598-13952617 | MS.gene62397:CDS | 45.0% | |
| ATCCACAGCTACCATTATGG+GGG | + | chr8.2:13951767-13951786 | MS.gene62397:intron | 45.0% | |
| ATCCATTTCTTGCTTGGAGC+AGG | + | chr8.2:13950929-13950948 | MS.gene62397:CDS | 45.0% | |
| ATGTGGTTTAGCAGATGGCT+TGG | + | chr8.2:13951255-13951274 | MS.gene62397:CDS | 45.0% | |
| CAGATCCACAGCTACCATTA+TGG | + | chr8.2:13951764-13951783 | MS.gene62397:intron | 45.0% | |
| CAGCGAAAACCTTCTCAATG+TGG | - | chr8.2:13951021-13951040 | None:intergenic | 45.0% | |
| CTGAGGTTGCGAATGAACTT+AGG | + | chr8.2:13951112-13951131 | MS.gene62397:CDS | 45.0% | |
| CTTCTTGCGATGATGAGTTG+GGG | + | chr8.2:13951070-13951089 | MS.gene62397:CDS | 45.0% | |
| GATCCACAGCTACCATTATG+GGG | + | chr8.2:13951766-13951785 | MS.gene62397:intron | 45.0% | |
| GCAGTGGCAGGGAAAATTAA+GGG | + | chr8.2:13952779-13952798 | MS.gene62397:CDS | 45.0% | |
| GCCGTGATAAATGCATTCCA+AGG | - | chr8.2:13950965-13950984 | None:intergenic | 45.0% | |
| GGAAGTTTGATAGGATCAGC+AGG | + | chr8.2:13951283-13951302 | MS.gene62397:CDS | 45.0% | |
| GTTTGATAGGATCAGCAGGA+AGG | + | chr8.2:13951287-13951306 | MS.gene62397:CDS | 45.0% | |
| TCACTACCTCAAACCCCAAA+GGG | + | chr8.2:13952599-13952618 | MS.gene62397:CDS | 45.0% | |
| TGCAGTGGCAGGGAAAATTA+AGG | + | chr8.2:13952778-13952797 | MS.gene62397:CDS | 45.0% | |
| TGCTCACTTGTACTTCATGG+TGG | + | chr8.2:13952634-13952653 | MS.gene62397:CDS | 45.0% | |
| TGGTAGCTCCTGTCATTGAT+TGG | + | chr8.2:13951161-13951180 | MS.gene62397:CDS | 45.0% | |
| TTCCTGCTCCAAGCAAGAAA+TGG | - | chr8.2:13950934-13950953 | None:intergenic | 45.0% | |
| ! | CATTGAGAAGGTTTTCGCTG+TGG | + | chr8.2:13951021-13951040 | MS.gene62397:CDS | 45.0% |
| ! | GGTAGCTCCTGTCATTGATT+GGG | + | chr8.2:13951162-13951181 | MS.gene62397:CDS | 45.0% |
| ! | GGTTTGAGGTAGTGATGCTT+TGG | - | chr8.2:13952594-13952613 | None:intergenic | 45.0% |
| ! | GGTTTTCGCTGTGGCTTATA+TGG | + | chr8.2:13951030-13951049 | MS.gene62397:CDS | 45.0% |
| ! | TAAGCGTCTCTTGTTTCGCT+CGG | - | chr8.2:13950893-13950912 | None:intergenic | 45.0% |
| !! | ACAAAGTTTTGTGCAGTGGC+AGG | + | chr8.2:13952767-13952786 | MS.gene62397:CDS | 45.0% |
| !! | AGGGACAAAGTTTTGTGCAG+TGG | + | chr8.2:13952763-13952782 | MS.gene62397:CDS | 45.0% |
| !! | CAAAGTTTTGTGCAGTGGCA+GGG | + | chr8.2:13952768-13952787 | MS.gene62397:CDS | 45.0% |
| ATTGTGATGACCGCGTTCCT+CGG | + | chr8.2:13953187-13953206 | MS.gene62397:CDS | 50.0% | |
| CAGGAGAGTCCCTTATGTTC+AGG | + | chr8.2:13952743-13952762 | MS.gene62397:CDS | 50.0% | |
| GAGATGAAAGAGAGGCCAAG+TGG | + | chr8.2:13951199-13951218 | MS.gene62397:CDS | 50.0% | |
| GTAGGGACGAGATGAAAGAG+AGG | + | chr8.2:13951191-13951210 | MS.gene62397:CDS | 50.0% | |
| GTCATGCCATAAGCACCACT+TGG | - | chr8.2:13951217-13951236 | None:intergenic | 50.0% | |
| TTTCATCTCGTCCCTACTCG+AGG | - | chr8.2:13951188-13951207 | None:intergenic | 50.0% | |
| TTTGCTGGAACTGCTTCCTC+AGG | + | chr8.2:13951337-13951356 | MS.gene62397:CDS | 50.0% | |
| ! | CATTGATTGGGCCTCGAGTA+GGG | + | chr8.2:13951174-13951193 | MS.gene62397:CDS | 50.0% |
| ! | TCATTGATTGGGCCTCGAGT+AGG | + | chr8.2:13951173-13951192 | MS.gene62397:CDS | 50.0% |
| ! | TTGGTGGTTCTGTCCTAGGT+TGG | + | chr8.2:13953221-13953240 | MS.gene62397:CDS | 50.0% |
| !! | GAGCAGGAAACTTGCTACCT+TGG | + | chr8.2:13950945-13950964 | MS.gene62397:CDS | 50.0% |
| !! | GGTTTAGCAGATGGCTTGGT+TGG | + | chr8.2:13951259-13951278 | MS.gene62397:CDS | 50.0% |
| !! | GTTCTGTCCTAGGTTGGTTC+TGG | + | chr8.2:13953227-13953246 | MS.gene62397:CDS | 50.0% |
| !! | TTAGCAGATGGCTTGGTTGG+TGG | + | chr8.2:13951262-13951281 | MS.gene62397:CDS | 50.0% |
| !! | TTGAGACCCTTTGGGGTTTG+AGG | - | chr8.2:13952608-13952627 | None:intergenic | 50.0% |
| !! | TTGGTTGGTGGTTCTGTCCT+AGG | + | chr8.2:13953217-13953236 | MS.gene62397:CDS | 50.0% |
| ATGACCGCGTTCCTCGGATT+CGG | + | chr8.2:13953193-13953212 | MS.gene62397:CDS | 55.0% | |
| CGGGCTATAGCTCCTACCTA+AGG | - | chr8.2:13951448-13951467 | None:intergenic | 55.0% | |
| CTCGAGGCCCAATCAATGAC+AGG | - | chr8.2:13951172-13951191 | None:intergenic | 55.0% | |
| GAGAGGCCAAGTGGTGCTTA+TGG | + | chr8.2:13951208-13951227 | MS.gene62397:CDS | 55.0% | |
| TGCCCCCATAATGGTAGCTG+TGG | - | chr8.2:13951772-13951791 | None:intergenic | 55.0% | |
| ! | CGATGATGAGTTGGGGAGGT+TGG | + | chr8.2:13951077-13951096 | MS.gene62397:CDS | 55.0% |
| ! | CTTGCGATGATGAGTTGGGG+AGG | + | chr8.2:13951073-13951092 | MS.gene62397:CDS | 55.0% |
| ! | TCTTGCTGTGGCAGCACCTA+TGG | - | chr8.2:13952993-13953012 | None:intergenic | 55.0% |
| !! | TTCCTCGGATTCGGCTTGGT+TGG | + | chr8.2:13953202-13953221 | MS.gene62397:CDS | 55.0% |
| CAAGCCGAATCCGAGGAACG+CGG | - | chr8.2:13953200-13953219 | None:intergenic | 60.0% | |
| CACCAACCAAGCCGAATCCG+AGG | - | chr8.2:13953207-13953226 | None:intergenic | 60.0% | |
| !! | CTCGGATTCGGCTTGGTTGG+TGG | + | chr8.2:13953205-13953224 | MS.gene62397:CDS | 60.0% |
| CGCGTTCCTCGGATTCGGCT+TGG | + | chr8.2:13953198-13953217 | MS.gene62397:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 13950860 | 13953258 | 13950860 | ID=MS.gene62397 |
| chr8.2 | mRNA | 13950860 | 13953258 | 13950860 | ID=MS.gene62397.t1;Parent=MS.gene62397 |
| chr8.2 | exon | 13950860 | 13951358 | 13950860 | ID=MS.gene62397.t1.exon1;Parent=MS.gene62397.t1 |
| chr8.2 | CDS | 13950860 | 13951358 | 13950860 | ID=cds.MS.gene62397.t1;Parent=MS.gene62397.t1 |
| chr8.2 | exon | 13952561 | 13953258 | 13952561 | ID=MS.gene62397.t1.exon2;Parent=MS.gene62397.t1 |
| chr8.2 | CDS | 13952561 | 13953258 | 13952561 | ID=cds.MS.gene62397.t1;Parent=MS.gene62397.t1 |
| Gene Sequence |
| Protein sequence |
